BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644728|ref|NP_206898.1| threonine synthase (thrC)
[Helicobacter pylori 26695]
(486 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KL7|A Chain A, Crystal Structure Of Threonine Synthase... 190 3e-49
pdb|1PPR|M Chain M, Peridinin-Chlorophyll-Protein Of Amphid... 29 1.3
pdb|1FG9|C Chain C, 3:1 Complex Of Interferon-Gamma Recepto... 27 5.1
pdb|1FYH|E Chain E, 1:1 Complex Between An Interferon Gamma... 27 6.7
pdb|1L5W|A Chain A, Crystal Structure Of The Maltodextrin P... 26 8.7
>pdb|1KL7|A Chain A, Crystal Structure Of Threonine Synthase From Yeast
pdb|1KL7|B Chain B, Crystal Structure Of Threonine Synthase From Yeast
Length = 514
Score = 190 bits (483), Expect = 3e-49
Identities = 153/509 (30%), Positives = 245/509 (48%), Gaps = 65/509 (12%)
Query: 6 TRSLKEKKIDFIEAILNPNAPKGGLY---TLERFETLQ-WQDCLNLSYNDLVECVFERLG 61
TRS K I F EAI+ A GGL+ T+ + + + D LS+ DL + RL
Sbjct: 11 TRSSSPKTISFEEAIIQGLATDGGLFIPPTIPQVDQATLFNDWSKLSFQDLAFAIX-RLY 69
Query: 62 L---EIPKNLLASALKRYENFDNPKNPAPIFAL----NERLFVQELYHGPSLAFKDMALQ 114
+ EIP L +KR + P+ E L + EL+HGP+ AFKD+ALQ
Sbjct: 70 IAQEEIPDADLKDLIKRSYSTFRSDEVTPLVQNVTGDKENLHILELFHGPTYAFKDVALQ 129
Query: 115 PLASLF--------SNLAVGKNEKYLMLVSTSGDTGPATLESLAGMPNVFVVCLYPKDGT 166
+ +LF +NL G+ ++ ++ +TSGDTG A + L G +V V LYP
Sbjct: 130 FVGNLFEYFLQRTNANLPEGEKKQITVVGATSGDTGSAAIYGLRGKKDVSVFILYPTGRI 189
Query: 167 SLVQKLQMVTQSASNLKVFGISGDFDDAQNALKNLLKDDDFNEALKACQLKLSVANSVNF 226
S +Q+ Q T N++ ++G FD+ Q+ +K + D +FN + + NS+N+
Sbjct: 190 SPIQEEQXTTVPDENVQTLSVTGTFDNCQDIVKAIFGDKEFNS-----KHNVGAVNSINW 244
Query: 227 GRIAFQIVYHIWGFLELYKKGAINSKE--KITLAIPSGNFGNALGAFYAKKMGLNIDKIK 284
RI Q Y+ + F + A N K+ K+ +PSGNFG+ L ++AKK GL I+K+
Sbjct: 245 ARILAQXTYYFYSFFQ-----ATNGKDSKKVKFVVPSGNFGDILAGYFAKKXGLPIEKLA 299
Query: 285 VVTNSNDVLREFIETGRYDLTHRSLKQTYSPAMDILKSSNVERALF-----------SLF 333
+ TN ND+L F+++G Y+ + + + T SPA DIL SSN ER L+ L
Sbjct: 300 IATNENDILDRFLKSGLYERSDK-VAATLSPAXDILISSNFERLLWYLAREYLANGDDLK 358
Query: 334 GFERTLELMQALEEEKFYALKPKELALLQEHFSCASCSDEACLKTIQEVYAE----HQYL 389
E Q L+ + + + + F+ S+E +TI+++Y Y+
Sbjct: 359 AGEIVNNWFQELKTNGKFQVDKSIIEGASKDFTSERVSNEETSETIKKIYESSVNPKHYI 418
Query: 390 IDPHTATALNASLKTHEKTLVSATASYEKFPRITLLALNEQKKNDNDKAALETLKNSYNT 449
+DPHTA + A+ + + A + + I+L + K D AL N Y+
Sbjct: 419 LDPHTAVGVCATER------LIAKDNDKSIQYISLSTAHPAKFADAVNNALSGFSN-YS- 470
Query: 450 PDSQRLDDLFERGIKHQEVLKLNEIKSSI 478
FE+ + +E+ KL+ +K +
Sbjct: 471 ---------FEKDVLPEELKKLSTLKKKL 490
>pdb|1PPR|M Chain M, Peridinin-Chlorophyll-Protein Of Amphidinium Carterae
pdb|1PPR|N Chain N, Peridinin-Chlorophyll-Protein Of Amphidinium Carterae
pdb|1PPR|O Chain O, Peridinin-Chlorophyll-Protein Of Amphidinium Carterae
Length = 312
Score = 28.9 bits (63), Expect = 1.3
Identities = 34/150 (22%), Positives = 59/150 (38%), Gaps = 13/150 (8%)
Query: 51 DLVECVFERLGLEIPKNLLASALKRYENFDNPKNPAPIFALNERLFVQELYHGPSLAFKD 110
D V R+ +P+N++ +PK PA + +L ++ Y G LAFKD
Sbjct: 86 DNVNAALGRVIASVPENMVMDVYDSVSKITDPKVPAYMKSLVNGADAEKAYEG-FLAFKD 144
Query: 111 MALQ-PLASLFSNLAVGKNEKYLMLVSTSGDTGPATLESLAGMPNVFVVCLYPKDGTSLV 169
+ + + S V +K + + L+ + + +V+ + P G S
Sbjct: 145 VVKKSQVTSAAGPATVPSGDKIGVAAQQLSEASYPFLKEIDWLSDVY---MKPLPGVSAQ 201
Query: 170 QKLQMVTQSASNLKVFGISGDFDDAQNALK 199
Q L+ + + V G D NALK
Sbjct: 202 QSLKAI----DKMIVMGAQAD----GNALK 223
>pdb|1FG9|C Chain C, 3:1 Complex Of Interferon-Gamma Receptor With Interferon-
Gamma Dimer
pdb|1FG9|D Chain D, 3:1 Complex Of Interferon-Gamma Receptor With Interferon-
Gamma Dimer
pdb|1FG9|E Chain E, 3:1 Complex Of Interferon-Gamma Receptor With Interferon-
Gamma Dimer
Length = 245
Score = 26.9 bits (58), Expect = 5.1
Identities = 33/145 (22%), Positives = 63/145 (42%), Gaps = 14/145 (9%)
Query: 124 AVGKNEKYLMLVSTSGDTGPATLESLAGMPNVFVVCLYPK---DGTSLVQKLQMVTQSAS 180
A K+E++ V G GP L+ + + +P +G Q++ ++
Sbjct: 95 AYAKSEEFA--VCRDGKIGPPKLDIRKEEKQIMIDIFHPSVFVNGDE--QEVDYDPETTC 150
Query: 181 NLKVFGISGDFDDAQNALKNLL-KDDDFNEALKACQLKLSVANSVNFGRIAFQIVYHIWG 239
++V+ + + ++ K L K+DD +E CQL + V++ + ++ + V H+WG
Sbjct: 151 YIRVYNVYVRMNGSEIQYKILTQKEDDCDEI--QCQLAIPVSSLNSQYCVSAEGVLHVWG 208
Query: 240 FLELYKKGA----INSKEKITLAIP 260
K NS K +L IP
Sbjct: 209 VTTEKSKEVCITIFNSSIKGSLWIP 233
>pdb|1FYH|E Chain E, 1:1 Complex Between An Interferon Gamma Single-Chain
Variant And Its Receptor
pdb|1FYH|B Chain B, 1:1 Complex Between An Interferon Gamma Single-Chain
Variant And Its Receptor
Length = 229
Score = 26.6 bits (57), Expect = 6.7
Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 10/120 (8%)
Query: 124 AVGKNEKYLMLVSTSGDTGPATLESLAGMPNVFVVCLYPK---DGTSLVQKLQMVTQSAS 180
A K+E++ V G GP L+ + + +P +G Q++ ++
Sbjct: 95 AYAKSEEFA--VCRDGKIGPPKLDIRKEEKQIMIDIFHPSVFVNGDE--QEVDYDPETTC 150
Query: 181 NLKVFGISGDFDDAQNALKNLL-KDDDFNEALKACQLKLSVANSVNFGRIAFQIVYHIWG 239
++V+ + + ++ K L K+DD +E CQL + V++ + ++ + V H+WG
Sbjct: 151 YIRVYNVYVRMNGSEIQYKILTQKEDDCDEI--QCQLAIPVSSLNSQYCVSAEGVLHVWG 208
>pdb|1L5W|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L5W|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L5V|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5V|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L6I|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|1L6I|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
Length = 796
Score = 26.2 bits (56), Expect = 8.7
Identities = 28/130 (21%), Positives = 58/130 (44%), Gaps = 19/130 (14%)
Query: 352 ALKPKELALLQEHFSCASCSDEACLKTIQEVYAEHQYLIDPHTATALNASLKTHEKTLVS 411
A + K+L L+Q++F CA CS + ++ H H A L +E ++
Sbjct: 261 AFEGKKLRLMQQYFQCA-CS-------VADILRRH------HLAGRKLHELADYEVIQLN 306
Query: 412 ATASYEKFPRITLLALNEQKKNDNDKAALETLKNSYNT----PDS-QRLDDLFERGIKHQ 466
T P + + ++E + + +D A+ + +Y P++ +R D +G+ +
Sbjct: 307 DTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALERWDVKLVKGLLPR 366
Query: 467 EVLKLNEIKS 476
+ +NEI +
Sbjct: 367 HMQIINEINT 376
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.134 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,679,060
Number of Sequences: 13198
Number of extensions: 106757
Number of successful extensions: 261
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 255
Number of HSP's gapped (non-prelim): 5
length of query: 486
length of database: 2,899,336
effective HSP length: 92
effective length of query: 394
effective length of database: 1,685,120
effective search space: 663937280
effective search space used: 663937280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)