BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645588|ref|NP_207764.1| hypothetical protein
[Helicobacter pylori 26695]
         (353 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|2TMA|A  Chain A, Tropomyosin >gi|230768|pdb|2TMA|B Chain...    28  1.2
pdb|1C1G|A  Chain A, Crystal Structure Of Tropomyosin At 7 A...    28  1.2
pdb|1IGN|A  Chain A, Dna-Binding Domain Of Rap1 In Complex W...    27  2.7
pdb|1JI6|A  Chain A, Crystal Structure Of The Insecticidal B...    27  3.5

>pdb|2TMA|A Chain A, Tropomyosin
 pdb|2TMA|B Chain B, Tropomyosin
          Length = 284

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 16/135 (11%)

Query: 143 IKDDAFASEVALKELLYWKTRYHDNLKDMIKSYNKGSRWERSEKSNADAEKYYEEIQDRI 202
           ++D+  + +  LK       +Y + LKD  +      + E +EK   DAE     +  RI
Sbjct: 39  LEDELVSLQKKLKGTEDELDKYSEALKDAQE------KLELAEKKATDAEADVASLNRRI 92

Query: 203 RRLKESKIFDSQSSNDQELQKSANSNLDLDPIGNAMPQALIAKETKIEETQAEKSQEMKE 262
           + L E ++  +Q      LQK   +    D     M         K+ E++A+K +E  E
Sbjct: 93  Q-LVEEELDRAQERLATALQKLEEAEKAADESERGM---------KVIESRAQKDEEKME 142

Query: 263 TTSEQTKSKPEKAKD 277
               Q K     A+D
Sbjct: 143 IQEIQLKEAKHIAED 157



>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
           In The Spermine-Induced Crystal Form
 pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
           In The Spermine-Induced Crystal Form
 pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
           In The Spermine-Induced Crystal Form
 pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
           In The Spermine-Induced Crystal Form
          Length = 284

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 16/135 (11%)

Query: 143 IKDDAFASEVALKELLYWKTRYHDNLKDMIKSYNKGSRWERSEKSNADAEKYYEEIQDRI 202
           ++D+  + +  LK       +Y + LKD  +      + E +EK   DAE     +  RI
Sbjct: 39  LEDELVSLQKKLKATEDELDKYSEALKDAQE------KLELAEKKATDAEADVASLNRRI 92

Query: 203 RRLKESKIFDSQSSNDQELQKSANSNLDLDPIGNAMPQALIAKETKIEETQAEKSQEMKE 262
           + L E ++  +Q      LQK   +    D     M         K+ E++A+K +E  E
Sbjct: 93  Q-LFEEELDRAQERLATALQKLEEAEKAADESERGM---------KVIESRAQKDEEKME 142

Query: 263 TTSEQTKSKPEKAKD 277
               Q K     A+D
Sbjct: 143 IQEIQLKEAKHIAED 157



>pdb|1IGN|A Chain A, Dna-Binding Domain Of Rap1 In Complex With Telomeric Dna
           Site
 pdb|1IGN|B Chain B, Dna-Binding Domain Of Rap1 In Complex With Telomeric Dna
           Site
          Length = 246

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 12  FKALWLGTALSASLSLAATESPTKTEPKPAKGVKNKPKSP 51
           F+   L   +   +S    E     EP+P K + N+PK P
Sbjct: 193 FRKFLLAYGIDDYISYYEAEKAQNREPEPMKNLTNRPKRP 232



>pdb|1JI6|A Chain A, Crystal Structure Of The Insecticidal Bacterial Del
           Endotoxin Cry3bb1 Bacillus Thuringiensis
          Length = 589

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 31/116 (26%), Positives = 50/116 (42%), Gaps = 16/116 (13%)

Query: 92  GIAWKESCAGVYKINFSDPSAGVYHSYIPSVLKSYGHNDSPFLRNVMGELLI--KDDAFA 149
           GI+      GV  + F+      Y S++ ++  S       F+  V  E+LI  K + +A
Sbjct: 6   GISVVGQILGVVGVPFAGALTSFYQSFLNTIWPSDADPWKAFMAQV--EVLIDKKIEEYA 63

Query: 150 SEVALKELLYWKTRYHDNLKDMIKSYNKGSRWERSEKSNADAEKYYEEIQDRIRRL 205
              AL EL   +  + D + + + S+ K     RS++S           QDRIR L
Sbjct: 64  KSKALAELQGLQNNFEDYV-NALNSWKKTPLSLRSKRS-----------QDRIREL 107



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.309    0.124    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,976,235
Number of Sequences: 13198
Number of extensions: 79104
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 117
Number of HSP's gapped (non-prelim): 6
length of query: 353
length of database: 2,899,336
effective HSP length: 89
effective length of query: 264
effective length of database: 1,724,714
effective search space: 455324496
effective search space used: 455324496
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)