BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645589|ref|NP_207765.1| phosphoglycerate mutase
(pgm) [Helicobacter pylori 26695]
(491 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1EQJ|A Chain A, Crystal Structure Of Phosphoglycerate M... 382 e-107
pdb|1EJ6|A Chain A, Reovirus Core 28 1.8
pdb|1CLQ|A Chain A, Crystal Structure Of A Replication Fork... 27 5.2
pdb|1IG9|A Chain A, Structure Of The Replicating Complex Of... 27 5.2
pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Do... 27 5.2
pdb|1KHB|A Chain A, Pepck Complex With Nonhydrolyzable Gtp ... 27 5.2
pdb|1KHE|A Chain A, Pepck Complex With Nonhydrolyzable Gtp ... 27 5.2
pdb|1K7H|A Chain A, Crystal Structure Of Shrimp Alkaline Ph... 26 8.8
pdb|1G63|B Chain B, Peptidyl-Cysteine Decarboxylase Epid >g... 26 8.8
pdb|1C28|A Chain A, The Crystal Structure Of A Complment-1q... 26 8.8
>pdb|1EQJ|A Chain A, Crystal Structure Of Phosphoglycerate Mutase From Bacillus
Stearothermophilus Complexed With 2-Phosphoglycerate
pdb|1EJJ|A Chain A, Crystal Structural Analysis Of Phosphoglycerate Mutase
Cocrystallized With 3-Phosphoglycerate
Length = 511
Score = 382 bits (980), Expect = e-107
Identities = 215/496 (43%), Positives = 302/496 (60%), Gaps = 16/496 (3%)
Query: 7 LIITDGIGYRKDSDHNAFFHAKKPTYDLMFKTLPYSLIDTHGLSVGLPKGQMGNSEVGHM 66
LII DG R ++ NA A KP +D + P++ + G +VGLP+GQMGNSEVGH+
Sbjct: 8 LIILDGFALRDETYGNAVAQANKPNFDRYWNEYPHTTLKACGEAVGLPEGQMGNSEVGHL 67
Query: 67 CIGAGRVLYQDLVKISLSLQNDELKNNPAFLNTI----QKSPVVHLMGLMSDGGVHSHIE 122
IGAGR++YQ L +I+++++ E N FL + Q +HL GL+SDGGVHSHI
Sbjct: 68 NIGAGRIVYQSLTRINIAIREGEFDRNETFLAAMNHVKQHGTSLHLFGLLSDGGVHSHIH 127
Query: 123 HFIALA-LECEKSHKKVCLHLITDGRDVAPKSALTYLKQMQNICNESI--QIATISGRFY 179
H AL L ++ K+V +H DGRDV P++A Y+K++Q E +IAT+SGR+Y
Sbjct: 128 HLYALLRLAAKEGVKRVYIHGFLDGRDVGPQTAPQYIKELQEKIKEYGVGEIATLSGRYY 187
Query: 180 AMDRDKRFERIELAYHSLM-GLNHTPLSPSEYIQSQYDKNITDEFIMPACFKNYCG---- 234
+MDRDKR++R+E AY +++ G T P E I+ Y I DEF++P+ G
Sbjct: 188 SMDRDKRWDRVEKAYRAMVYGEGPTYRDPLECIEDSYKHGIYDEFVLPSVIVREDGRPVA 247
Query: 235 -MQDDESFIFINFRNDRAREIVSALGQKQFSGFKR--QVFKKLHIATMTPYDNTFPYPVL 291
+QD+++ IF NFR DRA +I + + F F R + K L +T + T V
Sbjct: 248 TIQDNDAIIFYNFRPDRAIQISNTFTNEDFREFDRGPKHPKHLFFVCLTHFSETVAGYVA 307
Query: 292 FPKESVQNTLAEVVSQHNLTQSHIAETEKYAHVTFFINGGVETPFKNENRVLIQSPKVTT 351
F ++ NT+ EV+SQH L Q IAETEKY HVTFF++GG E F E+R+LI SPKV T
Sbjct: 308 FKPTNLDNTIGEVLSQHGLRQLRIAETEKYPHVTFFMSGGREEEFPGEDRILINSPKVPT 367
Query: 352 YDLKPEMSAKEVTLAVLEQMKLGT-DLIIVNFANGDMVGHTGNFEASVKAVEAVDACLGE 410
YDLKPEMSA EVT A+L++++ D II+N+AN DMVGH+G E ++KAVEAVD CLG+
Sbjct: 368 YDLKPEMSAYEVTDALLKEIEADKYDAIILNYANPDMVGHSGKLEPTIKAVEAVDECLGK 427
Query: 411 ILSLAKKLDYAMLLTSDHGNCERMKDENQNPLTNHTAGSVYCFVLGDGVKSIKNGALNNI 470
++ ++T+DHGN + + + P T HT V V G+K G L ++
Sbjct: 428 VVDAILAKGGIAIITADHGNADEVLTPDGKPQTAHTTNPVPVIVTKKGIKLRDGGILGDL 487
Query: 471 ASSVLKLMGLKAPATM 486
A ++L L+GL P M
Sbjct: 488 APTMLDLLGLPQPKEM 503
>pdb|1EJ6|A Chain A, Reovirus Core
Length = 1289
Score = 28.5 bits (62), Expect = 1.8
Identities = 15/35 (42%), Positives = 19/35 (53%), Gaps = 4/35 (11%)
Query: 33 DLMFKTLPYSLIDTHGLSVGLPKGQMGNSEVGHMC 67
+LM+K +P ID H GLP + GN VG C
Sbjct: 1010 ELMYKYMPIMRIDIH----GLPMEKRGNFIVGQNC 1040
>pdb|1CLQ|A Chain A, Crystal Structure Of A Replication Fork Dna Polymerase
Editing Complex At 2.7 A Resolution
pdb|1WAJ| Dna Polymerase From Bacteriophage Rb69
pdb|1WAF|A Chain A, Dna Polymerase From Bacteriophage Rb69
pdb|1WAF|B Chain B, Dna Polymerase From Bacteriophage Rb69
pdb|1IH7|A Chain A, High-Resolution Structure Of Apo Rb69 Dna Polymerase
Length = 903
Score = 26.9 bits (58), Expect = 5.2
Identities = 20/61 (32%), Positives = 26/61 (41%), Gaps = 12/61 (19%)
Query: 287 PYPVLFPKESVQNTLAEVVS------------QHNLTQSHIAETEKYAHVTFFINGGVET 334
PYP F KE + N V+S Q N++ IA T K A + +IN E
Sbjct: 390 PYPGAFVKEPIPNRYKYVMSFDLTSLYPSIIRQVNISPETIAGTFKVAPLHDYINAVAER 449
Query: 335 P 335
P
Sbjct: 450 P 450
>pdb|1IG9|A Chain A, Structure Of The Replicating Complex Of A Pol Alpha Family
Dna Polymerase
Length = 903
Score = 26.9 bits (58), Expect = 5.2
Identities = 20/61 (32%), Positives = 26/61 (41%), Gaps = 12/61 (19%)
Query: 287 PYPVLFPKESVQNTLAEVVS------------QHNLTQSHIAETEKYAHVTFFINGGVET 334
PYP F KE + N V+S Q N++ IA T K A + +IN E
Sbjct: 390 PYPGAFVKEPIPNRYKYVMSFDLTSLYPSIIRQVNISPETIAGTFKVAPLHDYINAVAER 449
Query: 335 P 335
P
Sbjct: 450 P 450
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 26.9 bits (58), Expect = 5.2
Identities = 14/36 (38%), Positives = 21/36 (57%)
Query: 337 KNENRVLIQSPKVTTYDLKPEMSAKEVTLAVLEQMK 372
K+ RVL ++PKVT D+ AKE ++E +K
Sbjct: 25 KSRARVLTEAPKVTFKDVAGAEEAKEELKEIVEFLK 60
>pdb|1KHB|A Chain A, Pepck Complex With Nonhydrolyzable Gtp Analog, Native Data
pdb|1KHF|A Chain A, Pepck Complex With Pep
pdb|1KHG|A Chain A, Pepck
Length = 625
Score = 26.9 bits (58), Expect = 5.2
Identities = 12/29 (41%), Positives = 18/29 (61%)
Query: 90 LKNNPAFLNTIQKSPVVHLMGLMSDGGVH 118
+K NP + TIQK+ + + SDGGV+
Sbjct: 344 VKTNPNAIKTIQKNTIFTNVAETSDGGVY 372
>pdb|1KHE|A Chain A, Pepck Complex With Nonhydrolyzable Gtp Analog, Mad Data
Length = 625
Score = 26.9 bits (58), Expect = 5.2
Identities = 12/29 (41%), Positives = 18/29 (61%)
Query: 90 LKNNPAFLNTIQKSPVVHLMGLMSDGGVH 118
+K NP + TIQK+ + + SDGGV+
Sbjct: 344 VKTNPNAIKTIQKNTIFTNVAETSDGGVY 372
>pdb|1K7H|A Chain A, Crystal Structure Of Shrimp Alkaline Phosphatase
pdb|1K7H|B Chain B, Crystal Structure Of Shrimp Alkaline Phosphatase
Length = 476
Score = 26.2 bits (56), Expect = 8.8
Identities = 17/84 (20%), Positives = 37/84 (43%), Gaps = 2/84 (2%)
Query: 349 VTTYDLKPEMSAKEVTLAVLEQMKLGTD--LIIVNFANGDMVGHTGNFEASVKAVEAVDA 406
V T D + + + E+T +E + + ++V D + H S+ ++
Sbjct: 276 VLTRDAEMDPTLPEMTKVAIEMLTKDENGFFLLVEGGRIDHMHHANQIRQSLAETLDMEE 335
Query: 407 CLGEILSLAKKLDYAMLLTSDHGN 430
+ LS+ + +L+T+DHG+
Sbjct: 336 AVSMALSMTDPEETIILVTADHGH 359
>pdb|1G63|B Chain B, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|F Chain F, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|A Chain A, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|G Chain G, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|H Chain H, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|I Chain I, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|J Chain J, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|L Chain L, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|C Chain C, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|E Chain E, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|K Chain K, Peptidyl-Cysteine Decarboxylase Epid
pdb|1G63|D Chain D, Peptidyl-Cysteine Decarboxylase Epid
Length = 181
Score = 26.2 bits (56), Expect = 8.8
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 431 CERMKDENQNPLTNH---TAGSVYCFVL---GDGVKSIKNGALNNIASSV 474
C+ + DE ++PL NH Y VL + + I NG +N+ ++V
Sbjct: 53 CDNLYDEIKDPLLNHINIVENHEYILVLPASANTINKIANGICDNLLTTV 102
>pdb|1C28|A Chain A, The Crystal Structure Of A Complment-1q Family Protein
Suggests An Evolutionary Link To Tumor Necrosis Factor
pdb|1C28|B Chain B, The Crystal Structure Of A Complment-1q Family Protein
Suggests An Evolutionary Link To Tumor Necrosis Factor
pdb|1C28|C Chain C, The Crystal Structure Of A Complment-1q Family Protein
Suggests An Evolutionary Link To Tumor Necrosis Factor
Length = 135
Score = 26.2 bits (56), Expect = 8.8
Identities = 18/76 (23%), Positives = 36/76 (46%), Gaps = 9/76 (11%)
Query: 323 HVTFFINGGVETPFKNENRVLIQSPKVTTYDLKPEMSAKEVTLAVLEQMKLGTDLIIVNF 382
H+T ++ + FK + VL TYD E + + + +VL +++G + + +
Sbjct: 54 HITVYMKDVKVSLFKKDKAVLF------TYDQYQEKNVDQASGSVLLHLEVGDQVWLQVY 107
Query: 383 ANGDMVGHTGNFEASV 398
+GD H G + +V
Sbjct: 108 GDGD---HNGLYADNV 120
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.135 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,787,022
Number of Sequences: 13198
Number of extensions: 113294
Number of successful extensions: 257
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 245
Number of HSP's gapped (non-prelim): 11
length of query: 491
length of database: 2,899,336
effective HSP length: 92
effective length of query: 399
effective length of database: 1,685,120
effective search space: 672362880
effective search space used: 672362880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)