BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645591|ref|NP_207767.1|
adenosylmethionine-8-amino-7-oxononanoate aminotransferase (bioA)
[Helicobacter pylori 26695]
(436 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1DTY|A Chain A, Crystal Structure Of Adenosylmethionine... 247 2e-66
pdb|1QJ5|B Chain B, Crystal Structure Of 7,8-Diaminopelargo... 244 2e-65
pdb|2OAT|A Chain A, Ornithine Aminotransferase Complexed Wi... 129 6e-31
pdb|1GBN|A Chain A, Human Ornithine Aminotransferase Comple... 129 6e-31
pdb|2DKB| 2,2-Dialkylglycine Decarboxylase (Pyruvate) (Dg... 110 4e-25
pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxyla... 108 2e-24
pdb|1D7U|A Chain A, Crystal Structure Of The Complex Of 2,2... 108 2e-24
pdb|1DGD| Dialkylglycine Decarboxylase (Pyruvate) (Dgd) (... 108 2e-24
pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semial... 57 5e-09
pdb|1GTX|A Chain A, 4-Aminobutyrate-Aminotransferase From P... 39 0.001
pdb|1GVE|A Chain A, Aflatoxin Aldehyde Reductase (Akr7a1) F... 26 7.7
pdb|1KI1|B Chain B, Guanine Nucleotide Exchange Region Of I... 26 7.7
pdb|1GVE|B Chain B, Aflatoxin Aldehyde Reductase (Akr7a1) F... 26 7.7
>pdb|1DTY|A Chain A, Crystal Structure Of Adenosylmethionine-8-Amino-7-
Oxonanoate Aminotransferase With Pyridoxal Phosphate
Cofactor.
pdb|1DTY|B Chain B, Crystal Structure Of Adenosylmethionine-8-Amino-7-
Oxonanoate Aminotransferase With Pyridoxal Phosphate
Cofactor
Length = 429
Score = 247 bits (630), Expect = 2e-66
Identities = 149/425 (35%), Positives = 234/425 (55%), Gaps = 21/425 (4%)
Query: 9 ALDLEYLWHPCSQMQEHQNFPIIPIKKAQGIYLYDFNDNAYMDLISSWWVNLFGHNNAYI 68
A D ++WHP + M P+ P+ A+G L + +D +SSWW + G+N+ +
Sbjct: 7 AFDERHIWHPYTSMTSP--LPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQL 64
Query: 69 SQQLKNQIDDLEHVLLASFSHKPIITLSQRLCQLTH--MDKCFYADNGSSCVEIALKMSY 126
+ +K+QID + HV+ +H P I L ++L +T ++ F AD+GS VE+A+KM+
Sbjct: 65 NAAMKSQIDAMSHVMFGEITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMAL 124
Query: 127 HAHFLKNQTRRKKLFLSLSNSYHGETLGALSVGDV-KLYKDTYTPLLLKNLTTPVPKNDH 185
K + R + FL+ N YHG+T GA+SV D + L +NL P P++
Sbjct: 125 QYWDAKGEARDR--FLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRM 182
Query: 186 E---IENSLNALKRLLDKHSEEICAFIAEPLLQCAGNMHIYSARYLKQAVLLCKQKNIHI 242
+ E + RL+ H EI A I EP++Q AG M +Y +LK+ +C ++ I +
Sbjct: 183 DGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILL 242
Query: 243 IFDEIATGFGRTGSMFAYEQCEIKPDFLCLSKGISGGYLPLSALLTHNEIYNQFYAPYEE 302
I DEIATGFGRTG +FA E EI PD LCL K ++GG + LSA LT E+ E
Sbjct: 243 IADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETI--SDGE 300
Query: 303 NKAFLHSHSYTGNALACACANATLDIFEKENVIEKNKALSGFIFNTLQNALKPLMEQQVV 362
F+H ++ GN LACA ANA+L I E + ++ I L+ L P + ++V
Sbjct: 301 AGCFMHGPTFMGNPLACAAANASLAILESGDWQQQ----VADIEVQLREQLAPARDAEMV 356
Query: 363 SDLRHLGMVFAFEVFIQTKERLSLAVFKK-TLKKGLLLRPLNNTIYLMPPYIITHEEVKK 421
+D+R LG + ++T +++A +K +++G+ +RP IYLMPPYII +++++
Sbjct: 357 ADVRVLGAIGV----VETTHPVNMAALQKFFVEQGVWIRPFGKLIYLMPPYIILPQQLQR 412
Query: 422 AVAGL 426
A +
Sbjct: 413 LTAAV 417
>pdb|1QJ5|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1QJ5|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ3|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
Length = 429
Score = 244 bits (622), Expect = 2e-65
Identities = 148/425 (34%), Positives = 234/425 (54%), Gaps = 21/425 (4%)
Query: 9 ALDLEYLWHPCSQMQEHQNFPIIPIKKAQGIYLYDFNDNAYMDLISSWWVNLFGHNNAYI 68
A D ++ HP + M P+ P+ A+G L + +D +SSWW + G+N+ +
Sbjct: 7 AFDQRHILHPYTSMTSP--LPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQL 64
Query: 69 SQQLKNQIDDLEHVLLASFSHKPIITLSQRLCQLTH--MDKCFYADNGSSCVEIALKMSY 126
+ +K+QID + HV+ +H P I L ++L +T ++ F AD+GS VE+A+KM+
Sbjct: 65 NAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMAL 124
Query: 127 HAHFLKNQTRRKKLFLSLSNSYHGETLGALSVGDV-KLYKDTYTPLLLKNLTTPVPKNDH 185
K + R++ FL+ N YHG+T GA+SV D + L +NL P P++
Sbjct: 125 QYWQAKGEARQR--FLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRM 182
Query: 186 E---IENSLNALKRLLDKHSEEICAFIAEPLLQCAGNMHIYSARYLKQAVLLCKQKNIHI 242
+ E + RL+ H EI A I EP++Q AG M +Y +LK+ +C ++ I +
Sbjct: 183 DGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILL 242
Query: 243 IFDEIATGFGRTGSMFAYEQCEIKPDFLCLSKGISGGYLPLSALLTHNEIYNQFYAPYEE 302
I DEIATGFGRTG +FA E EI PD LCL K ++GG + LSA LT E+ E
Sbjct: 243 IADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETI--SNGE 300
Query: 303 NKAFLHSHSYTGNALACACANATLDIFEKENVIEKNKALSGFIFNTLQNALKPLMEQQVV 362
F+H ++ GN LACA ANA+L I E + ++ I L+ L P + ++V
Sbjct: 301 AGCFMHGPTFMGNPLACAAANASLAILESGDWQQQ----VADIEVQLREQLAPARDAEMV 356
Query: 363 SDLRHLGMVFAFEVFIQTKERLSLAVFKK-TLKKGLLLRPLNNTIYLMPPYIITHEEVKK 421
+D+R LG + ++T +++A +K +++G+ +RP IYLMPPYII +++++
Sbjct: 357 ADVRVLGAIGV----VETTHPVNMAALQKFFVEQGVWIRPFGKLIYLMPPYIILPQQLQR 412
Query: 422 AVAGL 426
A +
Sbjct: 413 LTAAV 417
>pdb|2OAT|A Chain A, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|B Chain B, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|C Chain C, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|1OAT|A Chain A, Ornithine Aminotransferase
pdb|1OAT|B Chain B, Ornithine Aminotransferase
pdb|1OAT|C Chain C, Ornithine Aminotransferase
Length = 439
Score = 129 bits (324), Expect = 6e-31
Identities = 110/402 (27%), Positives = 185/402 (45%), Gaps = 28/402 (6%)
Query: 25 HQNFPI-IPIKKAQGIYLYDFNDNAYMDLISSWWVNLFGHNNAYISQQLKNQIDDLEHVL 83
H P+ + +++ +GIYL+D Y D +SS+ GH + I LK+Q+D L +
Sbjct: 53 HNYHPLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLT-LT 111
Query: 84 LASFSHKPIITLSQRLCQLTHMDKCFYADNGSSCVEIALKMSYH-AHFLKNQTRRKKLFL 142
+F + + + + +L + K + G E A K++ + +K + K +
Sbjct: 112 SRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIV 171
Query: 143 SLSNSYHGETLGALSVGDVKLYKDTYTPLLLKNLTTPVPKNDHEIENSLNALKRLLDKHS 202
+ ++ G TL A+S D + P + P D N L AL+R L
Sbjct: 172 FAAGNFWGRTLSAISSSTDPTSYDGFGPFM--------PGFDIIPYNDLPALERALQ--D 221
Query: 203 EEICAFIAEPLLQCAGNMHIYSARYLKQAVLLCKQKNIHIIFDEIATGFGRTGSMFAYEQ 262
+ AF+ EP+ AG + + YL LC + + I DEI TG RTG A +
Sbjct: 222 PNVAAFMVEPIQGEAGVV-VPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDY 280
Query: 263 CEIKPDFLCLSKGISGGYLPLSALLTHNEIYNQFYAPYEENKAFLHSHSYTGNALACACA 322
++PD + L K +SGG P+SA+L ++I K H +Y GN L C A
Sbjct: 281 ENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTI-------KPGEHGSTYGGNPLGCRVA 333
Query: 323 NATLDIFEKENVIEKNKALSGFIFNTLQNALKPLMEQQVVSDLRHLGMVFAFEVFIQTKE 382
A L++ E+EN+ E L + N L + VV+ +R G++ A V +TK+
Sbjct: 334 IAALEVLEEENLAENADKLGIILRNELMK-----LPSDVVTAVRGKGLLNAI-VIKETKD 387
Query: 383 RLSLAVFKKTLKKGLLLRPLN-NTIYLMPPYIITHEEVKKAV 423
+ V + GLL +P + + I PP +I +E+++++
Sbjct: 388 WDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESI 429
>pdb|1GBN|A Chain A, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|B Chain B, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|C Chain C, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|B Chain B, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|C Chain C, Human Ornithine Aminotransferase Complexed With L-Canaline
Length = 402
Score = 129 bits (324), Expect = 6e-31
Identities = 110/402 (27%), Positives = 185/402 (45%), Gaps = 28/402 (6%)
Query: 25 HQNFPI-IPIKKAQGIYLYDFNDNAYMDLISSWWVNLFGHNNAYISQQLKNQIDDLEHVL 83
H P+ + +++ +GIYL+D Y D +SS+ GH + I LK+Q+D L +
Sbjct: 16 HNYHPLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLT-LT 74
Query: 84 LASFSHKPIITLSQRLCQLTHMDKCFYADNGSSCVEIALKMSYH-AHFLKNQTRRKKLFL 142
+F + + + + +L + K + G E A K++ + +K + K +
Sbjct: 75 SRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIV 134
Query: 143 SLSNSYHGETLGALSVGDVKLYKDTYTPLLLKNLTTPVPKNDHEIENSLNALKRLLDKHS 202
+ ++ G TL A+S D + P + P D N L AL+R L
Sbjct: 135 FAAGNFWGRTLSAISSSTDPTSYDGFGPFM--------PGFDIIPYNDLPALERALQ--D 184
Query: 203 EEICAFIAEPLLQCAGNMHIYSARYLKQAVLLCKQKNIHIIFDEIATGFGRTGSMFAYEQ 262
+ AF+ EP+ AG + + YL LC + + I DEI TG RTG A +
Sbjct: 185 PNVAAFMVEPIQGEAGVV-VPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDY 243
Query: 263 CEIKPDFLCLSKGISGGYLPLSALLTHNEIYNQFYAPYEENKAFLHSHSYTGNALACACA 322
++PD + L K +SGG P+SA+L ++I K H +Y GN L C A
Sbjct: 244 ENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTI-------KPGEHGSTYGGNPLGCRVA 296
Query: 323 NATLDIFEKENVIEKNKALSGFIFNTLQNALKPLMEQQVVSDLRHLGMVFAFEVFIQTKE 382
A L++ E+EN+ E L + N L + VV+ +R G++ A V +TK+
Sbjct: 297 IAALEVLEEENLAENADKLGIILRNELMK-----LPSDVVTAVRGKGLLNAI-VIKETKD 350
Query: 383 RLSLAVFKKTLKKGLLLRPLN-NTIYLMPPYIITHEEVKKAV 423
+ V + GLL +P + + I PP +I +E+++++
Sbjct: 351 WDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESI 392
>pdb|2DKB| 2,2-Dialkylglycine Decarboxylase (Pyruvate) (Dgd) (E.C.4.1.1.64)
pdb|1DKA| 2,2-Dialkylglycine Decarboxylase (Pyruvate) (E.C.4.1.1.64)
Length = 432
Score = 110 bits (274), Expect = 4e-25
Identities = 98/422 (23%), Positives = 187/422 (44%), Gaps = 42/422 (9%)
Query: 33 IKKAQGIYLYDFNDNAYMDLISSWWVNLFGHNNAYISQQLKNQIDDLEHVLLASFSHKPI 92
I++A+G ++YD + A +D S + GH + I + L+H L + +P+
Sbjct: 27 IERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDH-LFSEMLSRPV 85
Query: 93 ITLSQRLCQLTH--MDKCFYADNGSSCVEIALKMSYHAHFLKNQTRRKKLFLSLSNSYHG 150
+ L+ RL +T +D+ G+ E A++M+ K + + S+HG
Sbjct: 86 VDLATRLANITPPGLDRALLLSTGAESNEAAIRMA-------KLVTGKYEIVGFAQSWHG 138
Query: 151 ETLGALSVGDVKLYKDTYTPLLLKNLTTPVP---------KNDHEIENSLNALKRLLDKH 201
T GA + + P + + P P ++ L+ L+D+
Sbjct: 139 MT-GAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQ 197
Query: 202 SE-EICAFIAEPLLQCAGNMHIYSARYLKQAVLLCKQKNIHIIFDEIATGFGRTGSMFAY 260
S + AFIAEP+L G + + Y+ C+ + + +I DE TG GRTG+MFA
Sbjct: 198 SSGNLAAFIAEPILSSGGIIELPDG-YMAALKRKCEARGMLLILDEAQTGVGRTGTMFAC 256
Query: 261 EQCEIKPDFLCLSKGISGGYLPLSALLTHNEIYNQFYAPYEENKAFLHSHSYTGNALACA 320
++ + PD L LSK G LPL+A++T I + + +L ++ + L A
Sbjct: 257 QRDGVTPDILTLSKXTLGAGLPLAAIVTSAAIEERAH-----ELGYLFYTTHVSDPLPAA 311
Query: 321 CANATLDIFEKENVIEKNKALSGFIFNTLQNALKPLMEQ-QVVSDLRHLGMVFAFEVF-- 377
LD+ +++ ++ + + + L+ L LME+ + D+R G++ E+
Sbjct: 312 VGLRVLDVVQRDGLVARANVMG----DRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKD 367
Query: 378 IQTKE---RLSLAVFKKTLKKGL-----LLRPLNNTIYLMPPYIITHEEVKKAVAGLVEI 429
+TKE L + ++ + GL L + + PP ++ +E+ ++ L +
Sbjct: 368 RRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQA 427
Query: 430 LD 431
++
Sbjct: 428 IE 429
>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Aminocyclopentanephosphonate
pdb|1M0O|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Methylpropanephosphonate
pdb|1M0P|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Phenylethanephosphonate
pdb|1M0Q|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
S- 1-Aminoethanephosphonate
Length = 433
Score = 108 bits (269), Expect = 2e-24
Identities = 98/422 (23%), Positives = 188/422 (44%), Gaps = 43/422 (10%)
Query: 33 IKKAQGIYLYDFNDNAYMDLISSWWVNLFGHNNAYISQQLKNQIDDLEHVLLASFSHKPI 92
I++A+G ++YD + A +D S + GH + I + L+H L + +P+
Sbjct: 29 IERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDH-LFSEMLSRPV 87
Query: 93 ITLSQRLCQLTH--MDKCFYADNGSSCVEIALKMSYHAHFLKNQTRRKKLFLSLSNSYHG 150
+ L+ RL +T +D+ G+ E A++M+ K + + S+HG
Sbjct: 88 VDLATRLANITPPGLDRALLLSTGAESNEAAIRMA-------KLVTGKYEIVGFAQSWHG 140
Query: 151 ETLGALSVGDVKLYKDTYTPLLLKNLTTPVP---------KNDHEIENSLNALKRLLDKH 201
T GA + + P + + P P ++ L+ L+D+
Sbjct: 141 MT-GAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQ 199
Query: 202 SE-EICAFIAEPLLQCAGNMHIYSARYLKQAVLLCKQKNIHIIFDEIATGFGRTGSMFAY 260
S + AFIAEP+L G + + Y+ C+ + + +I DE TG GRTG+MFA
Sbjct: 200 SSGNLAAFIAEPILSSGGIIELPDG-YMAALKRKCEARGMLLILDEAQTGVGRTGTMFAC 258
Query: 261 EQCEIKPDFLCLSKGISGGYLPLSALLTHNEIYNQFYAPYEENKAFLHSHSYTGNALACA 320
++ + PD L LSK + G LPL+A++T I + + +L ++ + L A
Sbjct: 259 QRDGVTPDILTLSKTLGAG-LPLAAIVTSAAIEERAH-----ELGYLFYTTHVSDPLPAA 312
Query: 321 CANATLDIFEKENVIEKNKALSGFIFNTLQNALKPLMEQ-QVVSDLRHLGMVFAFEVF-- 377
LD+ +++ ++ + + + L+ L LME+ + D+R G++ E+
Sbjct: 313 VGLRVLDVVQRDGLVARANVMG----DRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKD 368
Query: 378 IQTKE---RLSLAVFKKTLKKGL-----LLRPLNNTIYLMPPYIITHEEVKKAVAGLVEI 429
+TKE L + ++ + GL L + + PP ++ +E+ ++ L +
Sbjct: 369 RRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQA 428
Query: 430 LD 431
++
Sbjct: 429 IE 430
>pdb|1D7U|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Lcs
pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With 5pa
pdb|1D7S|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Dcs
pdb|1D7V|A Chain A, Crystal Structurg Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Nma
Length = 433
Score = 108 bits (269), Expect = 2e-24
Identities = 98/422 (23%), Positives = 188/422 (44%), Gaps = 43/422 (10%)
Query: 33 IKKAQGIYLYDFNDNAYMDLISSWWVNLFGHNNAYISQQLKNQIDDLEHVLLASFSHKPI 92
I++A+G ++YD + A +D S + GH + I + L+H+ S +P+
Sbjct: 29 IERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSGMLS-RPV 87
Query: 93 ITLSQRLCQLTH--MDKCFYADNGSSCVEIALKMSYHAHFLKNQTRRKKLFLSLSNSYHG 150
+ L+ RL +T +D+ G+ E A++M+ K + + S+HG
Sbjct: 88 VDLATRLANITPPGLDRALLLSTGAESNEAAIRMA-------KLVTGKYEIVGFAQSWHG 140
Query: 151 ETLGALSVGDVKLYKDTYTPLLLKNLTTPVP---------KNDHEIENSLNALKRLLDKH 201
T GA + + P + + P P ++ L+ L+D+
Sbjct: 141 MT-GAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQ 199
Query: 202 SE-EICAFIAEPLLQCAGNMHIYSARYLKQAVLLCKQKNIHIIFDEIATGFGRTGSMFAY 260
S + AFIAEP+L G + + Y+ C+ + + +I DE TG GRTG+MFA
Sbjct: 200 SSGNLAAFIAEPILSSGGIIELPDG-YMAALKRKCEARGMLLILDEAQTGVGRTGTMFAC 258
Query: 261 EQCEIKPDFLCLSKGISGGYLPLSALLTHNEIYNQFYAPYEENKAFLHSHSYTGNALACA 320
++ + PD L LSK + G LPL+A++T I + + +L ++ + L A
Sbjct: 259 QRDGVTPDILTLSKTLGAG-LPLAAIVTSAAIEERAH-----ELGYLFYTTHVSDPLPAA 312
Query: 321 CANATLDIFEKENVIEKNKALSGFIFNTLQNALKPLMEQ-QVVSDLRHLGMVFAFEVF-- 377
LD+ +++ ++ + + + L+ L LME+ + D+R G++ E+
Sbjct: 313 VGLRVLDVVQRDGLVARANVMG----DRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKD 368
Query: 378 IQTKE---RLSLAVFKKTLKKGL-----LLRPLNNTIYLMPPYIITHEEVKKAVAGLVEI 429
+TKE L + ++ + GL L + + PP ++ +E+ ++ L +
Sbjct: 369 RRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQA 428
Query: 430 LD 431
++
Sbjct: 429 IE 430
>pdb|1DGD| Dialkylglycine Decarboxylase (Pyruvate) (Dgd) (E.C.4.1.1.64)
Mutant With Gln 15 Replaced By His (Q15h) Complexed With
Lithium+ In Metal-Binding Site 1
pdb|1DGE| Dialkylglycine Decarboxylase (Pyruvate) (Dgd) (E.C.4.1.1.64)
Mutant With Gln 15 Replaced By His (Q15h) Complexed With
Rubidium+ In Metal-Binding Sites I And 2
Length = 432
Score = 108 bits (269), Expect = 2e-24
Identities = 98/422 (23%), Positives = 188/422 (44%), Gaps = 43/422 (10%)
Query: 33 IKKAQGIYLYDFNDNAYMDLISSWWVNLFGHNNAYISQQLKNQIDDLEHVLLASFSHKPI 92
I++A+G ++YD + A +D S + GH + I + L+H+ S +P+
Sbjct: 28 IERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSGMLS-RPV 86
Query: 93 ITLSQRLCQLTH--MDKCFYADNGSSCVEIALKMSYHAHFLKNQTRRKKLFLSLSNSYHG 150
+ L+ RL +T +D+ G+ E A++M+ K + + S+HG
Sbjct: 87 VDLATRLANITPPGLDRALLLSTGAESNEAAIRMA-------KLVTGKYEIVGFAQSWHG 139
Query: 151 ETLGALSVGDVKLYKDTYTPLLLKNLTTPVP---------KNDHEIENSLNALKRLLDKH 201
T GA + + P + + P P ++ L+ L+D+
Sbjct: 140 MT-GAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQ 198
Query: 202 SE-EICAFIAEPLLQCAGNMHIYSARYLKQAVLLCKQKNIHIIFDEIATGFGRTGSMFAY 260
S + AFIAEP+L G + + Y+ C+ + + +I DE TG GRTG+MFA
Sbjct: 199 SSGNLAAFIAEPILSSGGIIELPDG-YMAALKRKCEARGMLLILDEAQTGVGRTGTMFAC 257
Query: 261 EQCEIKPDFLCLSKGISGGYLPLSALLTHNEIYNQFYAPYEENKAFLHSHSYTGNALACA 320
++ + PD L LSK + G LPL+A++T I + + +L ++ + L A
Sbjct: 258 QRDGVTPDILTLSKTLGAG-LPLAAIVTSAAIEERAH-----ELGYLFYTTHVSDPLPAA 311
Query: 321 CANATLDIFEKENVIEKNKALSGFIFNTLQNALKPLMEQ-QVVSDLRHLGMVFAFEVF-- 377
LD+ +++ ++ + + + L+ L LME+ + D+R G++ E+
Sbjct: 312 VGLRVLDVVQRDGLVARANVMG----DRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKD 367
Query: 378 IQTKE---RLSLAVFKKTLKKGL-----LLRPLNNTIYLMPPYIITHEEVKKAVAGLVEI 429
+TKE L + ++ + GL L + + PP ++ +E+ ++ L +
Sbjct: 368 RRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQA 427
Query: 430 LD 431
++
Sbjct: 428 IE 429
>pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|2GSA|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|4GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase) Reduced With Cyanoborohydrate
pdb|4GSA|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase) Reduced With Cyanoborohydrate
pdb|3GSB|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
pdb|3GSB|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
Length = 432
Score = 56.6 bits (135), Expect = 5e-09
Identities = 72/320 (22%), Positives = 126/320 (38%), Gaps = 45/320 (14%)
Query: 31 IPIKKAQGIYLYDFNDNAYMDLISSWWVNLFGHNNAYISQQLKNQIDD---------LEH 81
I + + Y +D + N Y+D + +W + GH + + + LK ++ LE+
Sbjct: 41 IVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALEN 100
Query: 82 VLLASFSHKPIITLSQRLCQLTHMDKCFYADNGSSCVEIALKMSYHAHFLKNQTRRKKLF 141
VL + + ++ + ++G+ L++ ++ T R K+
Sbjct: 101 VLAEMVND-----------AVPSIEMVRFVNSGTEACMAVLRL------MRAYTGRDKI- 142
Query: 142 LSLSNSYHGE-----TLGALSVGDVKLYKDTYTPLLLKNLTTPVPKNDHEIENSLNALKR 196
+ YHG V + L P T P ND L A+K
Sbjct: 143 IKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYND------LEAVKA 196
Query: 197 LLDKHSEEICAFIAEPLLQCAGNMHIYSARYLKQAVLLCKQKNIHIIFDEIATGFGRTGS 256
L ++ EI I EP++ +G + + A +L+ + + + ++FDE+ TGF R
Sbjct: 197 LFAENPGEIAGVILEPIVGNSGFI-VPDAGFLEGLREITLEHDALLVFDEVMTGF-RIAY 254
Query: 257 MFAYEQCEIKPDFLCLSKGISGGYLPLSALLTHNEIYNQFYAPYEENKAFLHSHSYTGNA 316
E+ + PD L K I GG LP+ A EI Q AP + + +GN
Sbjct: 255 GGVQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKREIM-QLVAP---AGPMYQAGTLSGNP 309
Query: 317 LACACANATLDIFEKENVIE 336
LA TL++ + E
Sbjct: 310 LAMTAGIKTLELLRQPGTYE 329
>pdb|1GTX|A Chain A, 4-Aminobutyrate-Aminotransferase From Pig
pdb|1GTX|B Chain B, 4-Aminobutyrate-Aminotransferase From Pig
pdb|1GTX|C Chain C, 4-Aminobutyrate-Aminotransferase From Pig
pdb|1GTX|D Chain D, 4-Aminobutyrate-Aminotransferase From Pig
Length = 472
Score = 38.9 bits (89), Expect = 0.001
Identities = 37/155 (23%), Positives = 67/155 (42%), Gaps = 17/155 (10%)
Query: 142 LSLSNSYHGETLGALSVGDVKL----------YKDTYTPLLLKNLTTPVPKNDHEIENSL 191
LS ++HG T+G L+ K + P L L V +N E L
Sbjct: 183 LSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCL 242
Query: 192 NALKRLLDKHSEE---ICAFIAEPLLQCAGNMHIYSARYLKQAVLLCKQKNIHIIFDEIA 248
++ L+ K+ ++ + I EP+ G+ H S + ++ + ++ + DE+
Sbjct: 243 EEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHA-SDDFFRKLRDISRKHGCAFLVDEVQ 301
Query: 249 TGFGRTGSMFAYEQ--CEIKPDFLCLSKG-ISGGY 280
TG G TG +A+E + D + SK ++GG+
Sbjct: 302 TGGGSTGKFWAHEHWGLDDAADVMTFSKKMMTGGF 336
>pdb|1GVE|A Chain A, Aflatoxin Aldehyde Reductase (Akr7a1) From Rat Liver
Length = 327
Score = 26.2 bits (56), Expect = 7.7
Identities = 17/75 (22%), Positives = 33/75 (43%), Gaps = 1/75 (1%)
Query: 299 PYEENKAFLHSHSYTGNALACACAN-ATLDIFEKENVIEKNKALSGFIFNTLQNALKPLM 357
P EE H G + +N + ++ E + +KN + ++ + NA+ +
Sbjct: 116 PIEETLQACHQLHQEGKFVELGLSNYVSWEVAEICTLCKKNGWIMPTVYQGMYNAITRQV 175
Query: 358 EQQVVSDLRHLGMVF 372
E ++ LRH G+ F
Sbjct: 176 ETELFPCLRHFGLRF 190
>pdb|1KI1|B Chain B, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|D Chain D, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 352
Score = 26.2 bits (56), Expect = 7.7
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 13/88 (14%)
Query: 167 TYTPLLLKNLTTPVPKN--DHEIENSLNALKRLLDKHSEEICAFIAEPLLQCAGNMHIYS 224
T PL++KN+ P+N DH + LK L+K +EE+C+ + E + + + +
Sbjct: 155 TRYPLIIKNILENTPENHPDH------SHLKHALEK-AEELCSQVNEGVREKENSDRLEW 207
Query: 225 ARYLKQAVLLCKQKNIHIIFDEIATGFG 252
QA + C+ + ++F+ + G
Sbjct: 208 I----QAHVQCEGLSEQLVFNSVTNCLG 231
>pdb|1GVE|B Chain B, Aflatoxin Aldehyde Reductase (Akr7a1) From Rat Liver
Length = 327
Score = 26.2 bits (56), Expect = 7.7
Identities = 17/75 (22%), Positives = 33/75 (43%), Gaps = 1/75 (1%)
Query: 299 PYEENKAFLHSHSYTGNALACACAN-ATLDIFEKENVIEKNKALSGFIFNTLQNALKPLM 357
P EE H G + +N + ++ E + +KN + ++ + NA+ +
Sbjct: 116 PIEETLQACHQLHQEGKFVELGLSNYVSWEVAEICTLCKKNGWIMPTVYQGMYNAITRQV 175
Query: 358 EQQVVSDLRHLGMVF 372
E ++ LRH G+ F
Sbjct: 176 ETELFPCLRHFGLRF 190
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.137 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,474,000
Number of Sequences: 13198
Number of extensions: 101317
Number of successful extensions: 238
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 204
Number of HSP's gapped (non-prelim): 13
length of query: 436
length of database: 2,899,336
effective HSP length: 91
effective length of query: 345
effective length of database: 1,698,318
effective search space: 585919710
effective search space used: 585919710
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)