BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645592|ref|NP_207768.1| conserved hypothetical
secreted protein [Helicobacter pylori 26695]
(487 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1JX6|A Chain A, Crystal Structure Of Luxp From Vibrio H... 29 1.0
pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Fre... 28 1.8
pdb|1BZH|A Chain A, Cyclic Peptide Inhibitor Of Human Ptp1b 27 3.9
pdb|1I57|A Chain A, Crystal Structure Of Apo Human Ptp1b (C... 27 3.9
pdb|1EEN|A Chain A, Crystal Structure Of Protein Tyrosine P... 27 3.9
pdb|1A5Y| Protein Tyrosine Phosphatase 1b Cysteinyl-Phosp... 27 3.9
pdb|1KAK|A Chain A, Human Tyrosine Phosphatase 1b Complexed... 27 3.9
pdb|1LQF|A Chain A, Structure Of Ptp1b In Complex With A Pe... 27 3.9
pdb|1BZC|A Chain A, Human Ptp1b Catalytic Domain Complexed ... 27 3.9
pdb|1AAX| Crystal Structure Of Protein Tyrosine Phosphata... 27 3.9
pdb|1BZJ|A Chain A, Human Ptp1b Complexed With Tpicooh 27 3.9
pdb|1H99|A Chain A, Prd Of Lict Antiterminator From Bacillu... 27 3.9
pdb|2HNQ| Protein-Tyrosine Phosphatase 1b (Human) (E.C.3.... 27 3.9
pdb|1G1H|A Chain A, Crystal Structure Of Protein Tyrosine P... 27 3.9
pdb|1PTV|A Chain A, Crystal Structure Of Protein Tyrosine P... 27 5.1
pdb|1C83|A Chain A, Crystal Structure Of Protein Tyrosine P... 27 5.1
pdb|1GFY|A Chain A, Residue 259 Is A Key Determinant Of Sub... 27 5.1
pdb|1QJB|B Chain B, 14-3-3 ZetaPHOSPHOPEPTIDE COMPLEX (MODE... 27 5.1
pdb|1C86|A Chain A, Crystal Structure Of Protein Tyrosine P... 27 5.1
pdb|1DXH|A Chain A, Catabolic Ornithine Carbamoyltransferas... 27 5.1
pdb|1L8G|A Chain A, Crystal Structure Of Ptp1b Complexed Wi... 27 5.1
pdb|1PTU|A Chain A, Crystal Structure Of Protein Tyrosine P... 27 5.1
pdb|1M7X|A Chain A, The X-Ray Crystallographic Structure Of... 27 6.7
pdb|1HA0|A Chain A, Hemagglutinin Precursor Ha0 26 8.8
pdb|1HTM|D Chain D, Hemagglutinin Ectodomain (Soluble Fragm... 26 8.8
pdb|1FYH|A Chain A, 1:1 Complex Between An Interferon Gamma... 26 8.8
pdb|1JYL|A Chain A, Catalytic Mechanism Of Ctp:phosphocholi... 26 8.8
pdb|1QU1|F Chain F, Crystal Structure Of Eha2 (23-185) >gi|... 26 8.8
pdb|5HMG|B Chain B, Hemagglutinin (D112(B)G) (Bromelain Dig... 26 8.8
pdb|1K25|B Chain B, Pbp2x From A Highly Penicillin-Resistan... 26 8.8
pdb|2VIU|B Chain B, Influenza Virus Hemagglutinin >gi|49411... 26 8.8
>pdb|1JX6|A Chain A, Crystal Structure Of Luxp From Vibrio Harveyi Complexed
With Autoinducer-2
Length = 342
Score = 29.3 bits (64), Expect = 1.0
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 152 FEESVERLLILQKISTLFPKTTTPLEQSSLSLWAKLQDKLDILI 195
FE+ + +L I +++ +F + ++Q SLSL L+ K D LI
Sbjct: 66 FEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLI 109
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 28.5 bits (62), Expect = 1.8
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 8/93 (8%)
Query: 291 YIALKKANAQNYTTQDFEENNSPYTAEITQKLTALKPLEILKPEPFKDGFIVVQLISQIK 350
Y +K + + T F + N P A + LT L E + E +DG + +
Sbjct: 199 YHEMKDSGVISKTAMVFGQMNEPPGARMRVALTGLTMAEYFRDEQGQDGLLFI------- 251
Query: 351 DELQNFNEAKSALKTRLTQEKTLMALQ-TLAKE 382
D + F +A S + L + + + Q TLA E
Sbjct: 252 DNIFRFTQAGSEVSALLGRMPSAIGYQPTLATE 284
>pdb|1BZH|A Chain A, Cyclic Peptide Inhibitor Of Human Ptp1b
Length = 298
Score = 27.3 bits (59), Expect = 3.9
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 176 LEQSSLSL---WAKLQDKLDILILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232
+E+ SL W + ++K +I +++K++L E++K YY + + + T+ +TR +
Sbjct: 114 MEKGSLKCAQYWPQKEEKE--MIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREI 171
>pdb|1I57|A Chain A, Crystal Structure Of Apo Human Ptp1b (C215s) Mutant
Length = 310
Score = 27.3 bits (59), Expect = 3.9
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 176 LEQSSLSL---WAKLQDKLDILILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232
+E+ SL W + ++K +I +++K++L E++K YY + + + T+ +TR +
Sbjct: 126 MEKGSLKCAQYWPQKEEKE--MIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREI 183
>pdb|1EEN|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Acetyl-D-A-D-Bpa-Ptyr-L-I-P-Q-Q-G
pdb|1PTY| Crystal Structure Of Protein Tyrosine Phosphatase 1b Complexed
With Two Phosphotyrosine Molecules
pdb|1EEO|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Acetyl-E-L-E-F-Ptyr-M-D-Y-E-Nh2
Length = 321
Score = 27.3 bits (59), Expect = 3.9
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 176 LEQSSLSL---WAKLQDKLDILILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232
+E+ SL W + ++K +I +++K++L E++K YY + + + T+ +TR +
Sbjct: 114 MEKGSLKCAQYWPQKEEKE--MIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREI 171
>pdb|1A5Y| Protein Tyrosine Phosphatase 1b Cysteinyl-Phosphate Intermediate
Length = 330
Score = 27.3 bits (59), Expect = 3.9
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 176 LEQSSLSL---WAKLQDKLDILILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232
+E+ SL W + ++K +I +++K++L E++K YY + + + T+ +TR +
Sbjct: 114 MEKGSLKCAQYWPQKEEKE--MIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREI 171
>pdb|1KAK|A Chain A, Human Tyrosine Phosphatase 1b Complexed With An Inhibitor
pdb|1KAV|A Chain A, Human Tyrosine Phosphatase 1b Complexed With An Inhibitor
pdb|1G7G|A Chain A, Human Ptp1b Catalytic Domain Complexes With Pnu179326
pdb|1G7F|A Chain A, Human Ptp1b Catalytic Domain Complexed With Pnu177496
pdb|1JF7|A Chain A, Human Ptp1b Catalytic Domain Complexed With Pnu177836
pdb|1JF7|B Chain B, Human Ptp1b Catalytic Domain Complexed With Pnu177836
Length = 298
Score = 27.3 bits (59), Expect = 3.9
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 176 LEQSSLSL---WAKLQDKLDILILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232
+E+ SL W + ++K +I +++K++L E++K YY + + + T+ +TR +
Sbjct: 114 MEKGSLKCAQYWPQKEEKE--MIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREI 171
>pdb|1LQF|A Chain A, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|B Chain B, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|C Chain C, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|D Chain D, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
Length = 295
Score = 27.3 bits (59), Expect = 3.9
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 176 LEQSSLSL---WAKLQDKLDILILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232
+E+ SL W + ++K +I +++K++L E++K YY + + + T+ +TR +
Sbjct: 126 MEKGSLKCAQYWPQKEEKE--MIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREI 183
>pdb|1BZC|A Chain A, Human Ptp1b Catalytic Domain Complexed With Tpi
Length = 321
Score = 27.3 bits (59), Expect = 3.9
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 176 LEQSSLSL---WAKLQDKLDILILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232
+E+ SL W + ++K +I +++K++L E++K YY + + + T+ +TR +
Sbjct: 114 MEKGSLKCAQYWPQKEEKE--MIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREI 171
>pdb|1AAX| Crystal Structure Of Protein Tyrosine Phosphatase 1b Complexed
With Two Bis(Para-Phosphophenyl)methane (Bppm) Molecules
Length = 321
Score = 27.3 bits (59), Expect = 3.9
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 176 LEQSSLSL---WAKLQDKLDILILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232
+E+ SL W + ++K +I +++K++L E++K YY + + + T+ +TR +
Sbjct: 114 MEKGSLKCAQYWPQKEEKE--MIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREI 171
>pdb|1BZJ|A Chain A, Human Ptp1b Complexed With Tpicooh
Length = 297
Score = 27.3 bits (59), Expect = 3.9
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 176 LEQSSLSL---WAKLQDKLDILILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232
+E+ SL W + ++K +I +++K++L E++K YY + + + T+ +TR +
Sbjct: 113 MEKGSLKCAQYWPQKEEKE--MIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREI 170
>pdb|1H99|A Chain A, Prd Of Lict Antiterminator From Bacillus Subtilis
Length = 224
Score = 27.3 bits (59), Expect = 3.9
Identities = 38/172 (22%), Positives = 73/172 (42%), Gaps = 15/172 (8%)
Query: 317 EITQKLTALKPLEILKPEPFKDGFIVVQLISQIKDELQNFNEAKSALKTRLTQEKTLMAL 376
E+++++ + L++ K + I V L I +Q + L + K L
Sbjct: 19 EVSEEIISYAKLQLGKK---LNDSIYVSLTDHINFAIQRNQKGLDIKNALLWETKRLYKD 75
Query: 377 Q-TLAKEKLKDFKGKSVGYVSPNFGGTIS------ELNQEESAKFINALFNRQEKKGFIA 429
+ + KE L K K+ + + G I+ ELN EE IN +E +
Sbjct: 76 EFAIGKEALVMVKNKTGVSLPEDEAGFIALHIVNAELN-EEMPNIINITKVMEEILSIVK 134
Query: 430 INNKVVLYQITEQNFNH-SFSAEESQYMQRLVNNTKTDFFDKALIEELKKRY 480
+ K+ + E++ ++ F + + QRL N T + D L++ +K++Y
Sbjct: 135 YHFKI---EFNEESLHYYRFVTDLKFFAQRLFNGTHMESEDDFLLDTVKEKY 183
>pdb|2HNQ| Protein-Tyrosine Phosphatase 1b (Human) (E.C.3.1.3.48) Complexed
With Sodium Tungstate
pdb|2HNP| Protein-Tyrosine Phosphatase 1b (Human) (E.C.3.1.3.48)
Length = 321
Score = 27.3 bits (59), Expect = 3.9
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 176 LEQSSLSL---WAKLQDKLDILILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232
+E+ SL W + ++K +I +++K++L E++K YY + + + T+ +TR +
Sbjct: 114 MEKGSLKCAQYWPQKEEKE--MIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREI 171
>pdb|1G1H|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Bis-Phosphorylated Peptide
(Etd(Ptr)(Ptr) Rkggkgll) From The Insulin Receptor
Kinase
pdb|1G1G|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Mono-Phosphorylated Peptide (Etdy(Ptr)
Rkggkgll) From The Insulin Receptor Kinase
pdb|1G1F|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Tri-Phosphorylated Peptide (Rdi(Ptr)
Etd(Ptr)(Ptr)rk) From The Insulin Receptor Kinase
Length = 298
Score = 27.3 bits (59), Expect = 3.9
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 176 LEQSSLSL---WAKLQDKLDILILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232
+E+ SL W + ++K +I +++K++L E++K YY + + + T+ +TR +
Sbjct: 114 MEKGSLKCAQYWPQKEEKE--MIFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREI 171
>pdb|1PTV|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Phosphotyrosine
Length = 321
Score = 26.9 bits (58), Expect = 5.1
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 176 LEQSSLSL---WAKLQDKLDILILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232
+E+ SL W + ++K +I +++K++L E++K YY + + + T+ +TR +
Sbjct: 114 MEKGSLKCAQYWPQKEEKE--MIFEDTNLKLTLISEDIKTYYTVRQLELENLTTQETREI 171
>pdb|1C83|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 6-(Oxalyl-Amino)-1h-Indole-5-Carboxylic
Acid
pdb|1C88|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With
2-(Oxalyl-Amino)-4,5,6,7-Tetrahydro-Thieno[2
3-C]pyridine-3-Carboxylic Acid
pdb|1ECV|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 5-Iodo-2-(Oxalyl-Amino)-Benzoic Acid
pdb|1C87|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With
2-(Oxalyl-Amino-4,7-Dihydro-5h-Thieno[2,3-
C]pyran-3-Carboxylic Acid
pdb|1C84|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 3-(Oxalyl-Amino)-Naphthalene-2-Carboxlic
Aci
pdb|1C85|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 2-(Oxalyl-Amino)-Benzoic Acid
Length = 298
Score = 26.9 bits (58), Expect = 5.1
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 176 LEQSSLSL---WAKLQDKLDILILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232
+E+ SL W + ++K +I +++K++L E++K YY + + + T+ +TR +
Sbjct: 114 MEKGSLKCAQYWPQKEEKE--MIFEDTNLKLTLISEDIKTYYTVRQLELENLTTQETREI 171
>pdb|1GFY|A Chain A, Residue 259 Is A Key Determinant Of Substrate Specificity
Of Protein-Tyrosine Phosphatase 1b And Alpha
Length = 298
Score = 26.9 bits (58), Expect = 5.1
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 176 LEQSSLSL---WAKLQDKLDILILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232
+E+ SL W + ++K +I +++K++L E++K YY + + + T+ +TR +
Sbjct: 114 MEKGSLKCAQYWPQKEEKE--MIFEDTNLKLTLISEDIKTYYTVRQLELENLTTQETREI 171
>pdb|1QJB|B Chain B, 14-3-3 ZetaPHOSPHOPEPTIDE COMPLEX (MODE 1)
pdb|1IB1|A Chain A, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
pdb|1IB1|B Chain B, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
pdb|1IB1|C Chain C, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
pdb|1IB1|D Chain D, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
pdb|1QJA|B Chain B, 14-3-3 ZetaPHOSPHOPEPTIDE COMPLEX (MODE 2)
pdb|1QJB|A Chain A, 14-3-3 ZetaPHOSPHOPEPTIDE COMPLEX (MODE 1)
pdb|1QJA|A Chain A, 14-3-3 ZetaPHOSPHOPEPTIDE COMPLEX (MODE 2)
pdb|1A38|A Chain A, 14-3-3 Protein Zeta Bound To R18 Peptide
pdb|1A38|B Chain B, 14-3-3 Protein Zeta Bound To R18 Peptide
pdb|1A4O|A Chain A, 14-3-3 Protein Zeta Isoform
pdb|1A4O|B Chain B, 14-3-3 Protein Zeta Isoform
pdb|1A4O|C Chain C, 14-3-3 Protein Zeta Isoform
pdb|1A4O|D Chain D, 14-3-3 Protein Zeta Isoform
pdb|1A37|A Chain A, 14-3-3 Protein Zeta Bound To Ps-Raf259 Peptide
pdb|1A37|B Chain B, 14-3-3 Protein Zeta Bound To Ps-Raf259 Peptide
Length = 245
Score = 26.9 bits (58), Expect = 5.1
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 13/110 (11%)
Query: 243 LKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANE---KALRSYIALKKANA 299
LK +YY YL + D K + +Q + + Q+A E K ++ ++ A
Sbjct: 119 LKMKGDYYR-----YLAEVAAGDDKKGIVDQSQQ--AYQEAFEISKKEMQPTHPIRLGLA 171
Query: 300 QNYTTQDFEENNSPYTAEITQKLT---ALKPLEILKPEPFKDGFIVVQLI 346
N++ +E NSP A K A+ L+ L E +KD +++QL+
Sbjct: 172 LNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLL 221
>pdb|1C86|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
(R47v, D48n) Complexed With
2-(Oxalyl-Amino-4,7-Dihydro-5h-
Thieno[2,3-C]pyran-3-Carboxylic Acid
Length = 298
Score = 26.9 bits (58), Expect = 5.1
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 176 LEQSSLSL---WAKLQDKLDILILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232
+E+ SL W + ++K +I +++K++L E++K YY + + + T+ +TR +
Sbjct: 114 MEKGSLKCAQYWPQKEEKE--MIFEDTNLKLTLISEDIKTYYTVRQLELENLTTQETREI 171
>pdb|1DXH|A Chain A, Catabolic Ornithine Carbamoyltransferase From Pseudomonas
Aeruginosa
Length = 335
Score = 26.9 bits (58), Expect = 5.1
Identities = 17/76 (22%), Positives = 35/76 (45%), Gaps = 5/76 (6%)
Query: 352 ELQNFNEAKSALKTRLTQEKTLMALQTLAKEKLKDFKGKSVGYVSPNFGGTISELNQEES 411
E Q+ AL T +T A + A ++ G +V Y+ PN + + +++
Sbjct: 39 EQQHLKRKNIALIFEKTSTRTRCAFEVAAYDQ-----GANVTYIDPNSSQIGHKESMKDT 93
Query: 412 AKFINALFNRQEKKGF 427
A+ + +++ E +GF
Sbjct: 94 ARVLGRMYDAIEYRGF 109
>pdb|1L8G|A Chain A, Crystal Structure Of Ptp1b Complexed With 7-(1,1-Dioxo-1h-
Benzo[d]isothiazol-3-Yloxymethyl)-2-(Oxalyl-Amino)-4,7-
Dihydro-5h-Thieno[2,3-C]pyran-3-Carboxylic Acid
Length = 321
Score = 26.9 bits (58), Expect = 5.1
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 176 LEQSSLSL---WAKLQDKLDILILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232
+E+ SL W + ++K +I +++K++L E++K YY + + + T+ +TR +
Sbjct: 114 MEKGSLKCAQYWPQKEEKE--MIFEDTNLKLTLISEDIKTYYTVRQLELENLTTQETREI 171
>pdb|1PTU|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Phosphotyrosine-Containing Hexa-Peptide
(Dadepyl-Nh2)
pdb|1PTT|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Phosphotyrosine-Containing Tetra-Peptide
(Ac-Depyl-Nh2)
Length = 321
Score = 26.9 bits (58), Expect = 5.1
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 176 LEQSSLSL---WAKLQDKLDILILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232
+E+ SL W + ++K +I +++K++L E++K YY + + + T+ +TR +
Sbjct: 114 MEKGSLKCAQYWPQKEEKE--MIFEDTNLKLTLISEDIKTYYTVRQLELENLTTQETREI 171
>pdb|1M7X|A Chain A, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|B Chain B, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|C Chain C, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|D Chain D, The X-Ray Crystallographic Structure Of Branching Enzyme
Length = 617
Score = 26.6 bits (57), Expect = 6.7
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 154 ESVERLLILQKISTLFPKTTTPLEQSSLSLWAK-----LQDKLDILILNP 198
E V + + + ST FP + P + L W K + D LD + L+P
Sbjct: 337 EQVSGAVTMAEESTDFPGVSRPQDMGGLGFWYKWNLGWMHDTLDYMKLDP 386
>pdb|1HA0|A Chain A, Hemagglutinin Precursor Ha0
Length = 494
Score = 26.2 bits (56), Expect = 8.8
Identities = 10/36 (27%), Positives = 21/36 (57%)
Query: 243 LKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDL 278
+++ E +H+ + + + EG++QD + E K DL
Sbjct: 377 IEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDL 412
>pdb|1HTM|D Chain D, Hemagglutinin Ectodomain (Soluble Fragment, Tbha2)
pdb|1HTM|F Chain F, Hemagglutinin Ectodomain (Soluble Fragment, Tbha2)
pdb|1HTM|B Chain B, Hemagglutinin Ectodomain (Soluble Fragment, Tbha2)
Length = 138
Score = 26.2 bits (56), Expect = 8.8
Identities = 10/36 (27%), Positives = 21/36 (57%)
Query: 243 LKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDL 278
+++ E +H+ + + + EG++QD + E K DL
Sbjct: 19 IEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDL 54
>pdb|1FYH|A Chain A, 1:1 Complex Between An Interferon Gamma Single-Chain
Variant And Its Receptor
pdb|1FYH|D Chain D, 1:1 Complex Between An Interferon Gamma Single-Chain
Variant And Its Receptor
Length = 258
Score = 26.2 bits (56), Expect = 8.8
Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 35/166 (21%)
Query: 73 DFKELTKDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV--AKEIRK-TSVFQK 129
DF++LT + +++++ A+D LI + +LG + + V A+ ++K +
Sbjct: 92 DFEKLTNYSVTDLNVQRKAIDELI------QVMAELGANVSGEFVKEAENLKKYFNAGHS 145
Query: 130 DGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTPLEQSSLSLWAKLQD 189
D + L+ ILK EES +++ Q +S F L+ +D
Sbjct: 146 DVADNGTLFLGILKNWK------EESDRKIMQSQIVSFYF------------KLFKNFKD 187
Query: 190 KLDILILNPSDVKISLNEEEMKKYYESHKK---DFKKPTSFKTRSL 232
I V+ ++ E+ K++ S+KK DF+K T++ L
Sbjct: 188 DQSI----QKSVE-TIKEDMNVKFFNSNKKKRDDFEKLTNYSVTDL 228
>pdb|1JYL|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|B Chain B, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|C Chain C, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|D Chain D, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
Length = 254
Score = 26.2 bits (56), Expect = 8.8
Identities = 12/46 (26%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 232 LYFDASLEKPDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHD 277
LY+D ++ K ++KEL+ Y + + + + + +QD++ ++E +K++
Sbjct: 209 LYWD-NMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLEEILKNE 253
>pdb|1QU1|F Chain F, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|C Chain C, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|D Chain D, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|E Chain E, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|B Chain B, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|A Chain A, Crystal Structure Of Eha2 (23-185)
Length = 155
Score = 26.2 bits (56), Expect = 8.8
Identities = 10/36 (27%), Positives = 21/36 (57%)
Query: 243 LKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDL 278
+++ E +H+ + + + EG++QD + E K DL
Sbjct: 26 IEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDL 61
>pdb|5HMG|B Chain B, Hemagglutinin (D112(B)G) (Bromelain Digested) (Mutant With
Asp 112 Replaced By Gly In Ha2 Chains) Complex With
Sialic Acid
pdb|5HMG|D Chain D, Hemagglutinin (D112(B)G) (Bromelain Digested) (Mutant With
Asp 112 Replaced By Gly In Ha2 Chains) Complex With
Sialic Acid
pdb|5HMG|F Chain F, Hemagglutinin (D112(B)G) (Bromelain Digested) (Mutant With
Asp 112 Replaced By Gly In Ha2 Chains) Complex With
Sialic Acid
Length = 175
Score = 26.2 bits (56), Expect = 8.8
Identities = 10/36 (27%), Positives = 21/36 (57%)
Query: 243 LKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDL 278
+++ E +H+ + + + EG++QD + E K DL
Sbjct: 56 IEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDL 91
>pdb|1K25|B Chain B, Pbp2x From A Highly Penicillin-Resistant Streptococcus
Pneumoniae Clinical Isolate
pdb|1K25|D Chain D, Pbp2x From A Highly Penicillin-Resistant Streptococcus
Pneumoniae Clinical Isolate
pdb|1K25|A Chain A, Pbp2x From A Highly Penicillin-Resistant Streptococcus
Pneumoniae Clinical Isolate
pdb|1K25|C Chain C, Pbp2x From A Highly Penicillin-Resistant Streptococcus
Pneumoniae Clinical Isolate
Length = 685
Score = 26.2 bits (56), Expect = 8.8
Identities = 23/106 (21%), Positives = 47/106 (43%), Gaps = 11/106 (10%)
Query: 45 KVGQIKISQEELAQEYRRLKDAYAESIPDFKELTKDQIKAMHLEKSALDSLINQALLRNL 104
+VG I E ++Q+ KD Y + + Q +D+ + + + +
Sbjct: 175 RVGNIVPGTELVSQQTVDGKDVYTTLSSPLQSFMETQ----------MDAFLEKVKGKYM 224
Query: 105 ALDLGLGATKQEVAKEIRKT-SVFQKDGVFDEELYKNILKQSHYRP 149
L T + +A R T + K+G+ ++ ++++IL QS+Y P
Sbjct: 225 TATLVSAKTGEILATTQRPTFNADTKEGITEDFVWRDILYQSNYEP 270
>pdb|2VIU|B Chain B, Influenza Virus Hemagglutinin
pdb|1HGE|B Chain B, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains Complex With
Alpha-2-O-Methyl-5-N-Acetyl-Alpha-D-Neuraminic Acid
pdb|1HGE|D Chain D, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains Complex With
Alpha-2-O-Methyl-5-N-Acetyl-Alpha-D-Neuraminic Acid
pdb|1HGE|F Chain F, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains Complex With
Alpha-2-O-Methyl-5-N-Acetyl-Alpha-D-Neuraminic Acid
pdb|1HGH|B Chain B, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2-O-(4'-Benzylamidocarboxybutyl)-5-N-
Acetylneuraminic Acid
pdb|1HGH|D Chain D, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2-O-(4'-Benzylamidocarboxybutyl)-5-N-
Acetylneuraminic Acid
pdb|1HGH|F Chain F, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2-O-(4'-Benzylamidocarboxybutyl)-5-N-
Acetylneuraminic Acid
pdb|1HGI|B Chain B, Hemagglutinin (Bromelain Digested) Complexed With
4-O-Acetyl-Alpha-2-O-Methyl-5-Acetyl-Neuraminic Acid
pdb|1HGI|D Chain D, Hemagglutinin (Bromelain Digested) Complexed With
4-O-Acetyl-Alpha-2-O-Methyl-5-Acetyl-Neuraminic Acid
pdb|1HGI|F Chain F, Hemagglutinin (Bromelain Digested) Complexed With
4-O-Acetyl-Alpha-2-O-Methyl-5-Acetyl-Neuraminic Acid
pdb|1HGJ|B Chain B, Hemagglutinin (Bromelain Digested) Complex With
9-Amino-9-Deoxy-Alpha-2-O-Methyl-5-N-Acetyl-Neuraminic
Acid
pdb|1HGJ|D Chain D, Hemagglutinin (Bromelain Digested) Complex With
9-Amino-9-Deoxy-Alpha-2-O-Methyl-5-N-Acetyl-Neuraminic
Acid
pdb|1HGJ|F Chain F, Hemagglutinin (Bromelain Digested) Complex With
9-Amino-9-Deoxy-Alpha-2-O-Methyl-5-N-Acetyl-Neuraminic
Acid
pdb|1HGD|B Chain B, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains
pdb|1HGD|D Chain D, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains
pdb|1HGD|F Chain F, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains
pdb|1EO8|B Chain B, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
pdb|1HGG|B Chain B, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2,3-Sialyllactose
pdb|1HGG|D Chain D, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2,3-Sialyllactose
pdb|1HGG|F Chain F, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2,3-Sialyllactose
pdb|3HMG|B Chain B, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant With
Leu 226 Replaced By Gln In Ha1 Chains)
pdb|3HMG|D Chain D, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant With
Leu 226 Replaced By Gln In Ha1 Chains)
pdb|3HMG|F Chain F, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant With
Leu 226 Replaced By Gln In Ha1 Chains)
pdb|4HMG|B Chain B, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant With
Leu 226 Replaced By Gln In Ha1 Chains) Complex With
Sialic Acid
pdb|4HMG|D Chain D, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant With
Leu 226 Replaced By Gln In Ha1 Chains) Complex With
Sialic Acid
pdb|4HMG|F Chain F, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant With
Leu 226 Replaced By Gln In Ha1 Chains) Complex With
Sialic Acid
pdb|1HGF|B Chain B, Hemagglutinin (Bromelain Digested)
pdb|1HGF|D Chain D, Hemagglutinin (Bromelain Digested)
pdb|1HGF|F Chain F, Hemagglutinin (Bromelain Digested)
pdb|2HMG|B Chain B, Hemagglutinin (G146(A)D) (Bromelain Digested) (Mutant With
Gly 146 Replaced By Asp In Ha1 Chains)
pdb|2HMG|D Chain D, Hemagglutinin (G146(A)D) (Bromelain Digested) (Mutant With
Gly 146 Replaced By Asp In Ha1 Chains)
pdb|2HMG|F Chain F, Hemagglutinin (G146(A)D) (Bromelain Digested) (Mutant With
Gly 146 Replaced By Asp In Ha1 Chains)
pdb|1KEN|B Chain B, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1KEN|D Chain D, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1KEN|F Chain F, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1QFU|B Chain B, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
Length = 175
Score = 26.2 bits (56), Expect = 8.8
Identities = 10/36 (27%), Positives = 21/36 (57%)
Query: 243 LKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDL 278
+++ E +H+ + + + EG++QD + E K DL
Sbjct: 56 IEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDL 91
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.314 0.131 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,595,921
Number of Sequences: 13198
Number of extensions: 103533
Number of successful extensions: 370
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 341
Number of HSP's gapped (non-prelim): 43
length of query: 487
length of database: 2,899,336
effective HSP length: 92
effective length of query: 395
effective length of database: 1,685,120
effective search space: 665622400
effective search space used: 665622400
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)