BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645594|ref|NP_207770.1| cell divison protein (ftsZ)
[Helicobacter pylori 26695]
(385 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1FSZ| Crystal Structure Of The Cell-Division Protein ... 236 3e-63
pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diff... 42 2e-04
pdb|1IA0|B Chain B, Kif1a Head-Microtubule Complex Structur... 42 2e-04
pdb|1FCD|A Chain A, Flavocytochrome C Sulfide Dehydrogenase... 29 0.78
pdb|1J6N|A Chain A, Crystal Structure Of Cysteine Synthase ... 29 0.78
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 29 1.0
pdb|1FMB| Eiav Protease Complexed With The Inhibitor Hby-... 28 1.3
pdb|1H5Q|A Chain A, Mannitol Dehydrogenase From Agaricus Bi... 28 2.3
pdb|1JVB|A Chain A, Alcohol Dehydrogenase From The Archaeon... 28 2.3
pdb|1JQ5|A Chain A, Bacillus Stearothermophilus Glycerol De... 27 3.0
pdb|2LDB| L-Lactate Dehydrogenase (E.C.1.1.1.27) Complex ... 27 3.0
pdb|1LDN|A Chain A, L-Lactate Dehydrogenase (E.C.1.1.1.27) ... 27 3.0
pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synth... 27 3.9
pdb|1D2M|A Chain A, Uvrb Protein Of Thermus Thermophilus Hb... 26 6.6
pdb|1E4D|C Chain C, Structure Of Oxa10 Beta-Lactamase At Ph... 26 6.6
pdb|1K4F|B Chain B, Crystal Structure Of The Class D Beta-L... 26 6.6
pdb|1H5X|A Chain A, Crystal Structure Of The Class D Beta-L... 26 6.6
pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Ch... 26 6.6
pdb|1E3U|B Chain B, Mad Structure Of Oxa10 Class D Beta-Lac... 26 6.6
pdb|1C4O|A Chain A, Crystal Structure Of The Dna Nucleotide... 26 6.6
pdb|1FOF|A Chain A, Crystal Structure Of The Class D Beta-L... 26 6.6
pdb|1K55|C Chain C, Oxa 10 Class D Beta-Lactamase At Ph 7.5... 26 6.6
pdb|1K56|C Chain C, Oxa 10 Class D Beta-Lactamase At Ph 6.5 26 6.6
pdb|1E3U|D Chain D, Mad Structure Of Oxa10 Class D Beta-Lac... 26 6.6
>pdb|1FSZ| Crystal Structure Of The Cell-Division Protein Ftsz At 2.8a
Resolution
Length = 372
Score = 236 bits (602), Expect = 3e-63
Identities = 138/334 (41%), Positives = 202/334 (60%), Gaps = 7/334 (2%)
Query: 5 SEMENYNIGQASIEEVSDPAY---KGAKIVVIGVGGGGSNMIKHLVEYGVHQDVTPIATN 61
S++E +N + S E+ Y AKI V+G GG G+N I L G+ T +A N
Sbjct: 12 SKLEEFNELELSPEDKELLEYLQQTKAKITVVGCGGAGNNTITRLKMEGIEGAKT-VAIN 70
Query: 62 TDGQHLKNNPAPVKILLGKESTGGLGAGGIPDIGRKAAEESANEIKEAIKDAKLVIISTG 121
TD Q L A KIL+GK+ T GLGAGG P IG +AA+ESA EIK AI+D+ +V I+ G
Sbjct: 71 TDAQQLIRTKADKKILIGKKLTRGLGAGGNPKIGEEAAKESAEEIKAAIQDSDMVFITCG 130
Query: 122 LGGGTGTGATPTIVKIAKEVGALTIAIVTKPFKYEGNQKRKRAEEGLKELEQSSDSILVI 181
LGGGTGTG+ P + +I+K++GALT+A+VT PF EG + K A EGL+ L+Q +D+++VI
Sbjct: 131 LGGGTGTGSAPVVAEISKKIGALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVI 190
Query: 182 PNDKILLTMKKNASTTECYREVDDVLVRAVSGISTIITKPGNINVDFADLKSALGFKGFA 241
PN+K L + N ++ D+VL+ AV G+ +ITK G INVDFAD+K+ + G A
Sbjct: 191 PNEK-LFEIVPNMPLKLAFKVADEVLINAVKGLVELITKDGLINVDFADVKAVMNNGGLA 249
Query: 242 LMGIGEATGEESAKLAVQNAIQSPLLDDASIEGAKSIIVFFEHHPDYPMMAYSQACDFIQ 301
++GIGE+ E+ AK AV A+ SPLL D I+GA ++ D + + +
Sbjct: 250 MIGIGESDSEKRAKEAVSMALNSPLL-DVDIDGATGALIHVMGPEDLTLEEAREVVATVS 308
Query: 302 DQAHQDVDVKFGQHTSDNIPIDHVRVTIIATGAE 335
+ + + +G +N+ + VRV ++ TG +
Sbjct: 309 SRLDPNATIIWGATIDENLE-NTVRVLLVITGVQ 341
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction
Length = 427
Score = 41.6 bits (96), Expect = 2e-04
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Query: 118 ISTGLGGGTGTG-ATPTIVKIAKEVGAL---TIAIVTKPFKYEGNQKRKRAEEGLKELEQ 173
++ LGGGTG+G T I KI +E T ++V P + + A + +L +
Sbjct: 135 LTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVE 194
Query: 174 SSDSILVIPNDKIL-LTMKKNASTTECYREVDDVLVRAVSGISTIITKPGNINVDFADL 231
++D I N+ + + + TT Y +++ ++ +SG++T + PG +N D L
Sbjct: 195 NTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKL 253
>pdb|1IA0|B Chain B, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|1JFF|B Chain B, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 445
Score = 41.6 bits (96), Expect = 2e-04
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Query: 118 ISTGLGGGTGTG-ATPTIVKIAKEVGAL---TIAIVTKPFKYEGNQKRKRAEEGLKELEQ 173
++ LGGGTG+G T I KI +E T ++V P + + A + +L +
Sbjct: 135 LTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVE 194
Query: 174 SSDSILVIPNDKIL-LTMKKNASTTECYREVDDVLVRAVSGISTIITKPGNINVDFADL 231
++D I N+ + + + TT Y +++ ++ +SG++T + PG +N D L
Sbjct: 195 NTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKL 253
>pdb|1FCD|A Chain A, Flavocytochrome C Sulfide Dehydrogenase (Fcsd)
pdb|1FCD|B Chain B, Flavocytochrome C Sulfide Dehydrogenase (Fcsd)
Length = 401
Score = 29.3 bits (64), Expect = 0.78
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 27 GAKIVVIGVGGGGSNMIKHLVEYGVHQDVTPIATNTD 63
G K+VV+G G GG+ K++ +VT I NTD
Sbjct: 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD 38
>pdb|1J6N|A Chain A, Crystal Structure Of Cysteine Synthase (Tm0665) From
Thermotoga Maritima At 1.8 A Resolution
pdb|1J6N|B Chain B, Crystal Structure Of Cysteine Synthase (Tm0665) From
Thermotoga Maritima At 1.8 A Resolution
pdb|1J6N|C Chain C, Crystal Structure Of Cysteine Synthase (Tm0665) From
Thermotoga Maritima At 1.8 A Resolution
pdb|1J6N|D Chain D, Crystal Structure Of Cysteine Synthase (Tm0665) From
Thermotoga Maritima At 1.8 A Resolution
Length = 303
Score = 29.3 bits (64), Expect = 0.78
Identities = 23/77 (29%), Positives = 38/77 (48%), Gaps = 3/77 (3%)
Query: 79 GKESTGGLGAGGIPDI-GRKAAEESAN-EIKEAIKDAKLVIISTGLGGGTGTGA-TPTIV 135
GK + G+GAG +P I R +E E +EA + A+ + GL G +GA +
Sbjct: 217 GKHAIQGIGAGFVPKILDRSVIDEVITVEDEEAYEMARYLAKKEGLLVGISSGANVAAAL 276
Query: 136 KIAKEVGALTIAIVTKP 152
K+A+++G + P
Sbjct: 277 KVAQKLGPDARVVTVAP 293
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 28.9 bits (63), Expect = 1.0
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 159 QKRKRAEEGLKELEQSSDSILVIPNDKILLTMKKNASTTECYREVDDVLVR 209
+++++AE LKELEQ + N L +K + TE Y E +++ VR
Sbjct: 871 ERQQKAEAELKELEQKHTQLCEEKN----LLQEKLQAETELYAEAEEMRVR 917
>pdb|1FMB| Eiav Protease Complexed With The Inhibitor Hby-793
pdb|2FMB| Eiav Protease Complexed With An Inhibitor Lp-130
Length = 104
Score = 28.5 bits (62), Expect = 1.3
Identities = 20/67 (29%), Positives = 28/67 (40%), Gaps = 12/67 (17%)
Query: 25 YKGAKIVVIGVGGGGSNMIKHLVEYGVHQDVTPIATNTDGQHLKNNPAPVKI---LLGKE 81
Y+G K G+GG G N V TP+ G+H+K I +LG++
Sbjct: 43 YRGRKYQGTGIGGVGGN---------VETFSTPVTIKKKGRHIKTRMLVADIPVTILGRD 93
Query: 82 STGGLGA 88
LGA
Sbjct: 94 ILQDLGA 100
>pdb|1H5Q|A Chain A, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|B Chain B, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|C Chain C, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|D Chain D, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|E Chain E, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|F Chain F, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|G Chain G, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|H Chain H, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|I Chain I, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|J Chain J, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|K Chain K, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|L Chain L, Mannitol Dehydrogenase From Agaricus Bisporus
Length = 265
Score = 27.7 bits (60), Expect = 2.3
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 10/59 (16%)
Query: 313 GQHTSDNIPIDHVRVTIIATGAERNSG----------GASLESIATPSQPVVKQTRKVG 361
G H + I V TII TG R G GA++ I + V+ T KVG
Sbjct: 1 GSHMAPGFTISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVG 59
>pdb|1JVB|A Chain A, Alcohol Dehydrogenase From The Archaeon Sulfolobus
Solfataricus
Length = 347
Score = 27.7 bits (60), Expect = 2.3
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 106 IKEAIKDAKLVIISTGLGGGTGTGATPTIVKIAKEVGALTI 146
+++A D ++ G GGG GT A V+IAK V TI
Sbjct: 163 VRKASLDPTKTLLVVGAGGGLGTXA----VQIAKAVSGATI 199
>pdb|1JQ5|A Chain A, Bacillus Stearothermophilus Glycerol Dehydrogenase Complex
With Nad+
pdb|1JPU|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Glycerol
Dehydrogenase
pdb|1JQA|A Chain A, Bacillus Stearothermophilus Glycerol Dehydrogenase Complex
With Glycerol
Length = 370
Score = 27.3 bits (59), Expect = 3.0
Identities = 19/56 (33%), Positives = 29/56 (50%), Gaps = 5/56 (8%)
Query: 13 GQAS---IEEVSDPAYKGAKIVVIGVGGGGSNMIKHLV--EYGVHQDVTPIATNTD 63
G+AS +E +++ A K +VIGVGGG + V E + + P A +TD
Sbjct: 68 GEASRNEVERIANIARKAEAAIVIGVGGGKTLDTAKAVADELDAYIVIVPTAASTD 123
>pdb|2LDB| L-Lactate Dehydrogenase (E.C.1.1.1.27) Complex With NAD And
Fructose-1,6-Bisphosphate
pdb|1LDB| Apo-L-Lactate Dehydrogenase (E.C.1.1.1.27)
Length = 317
Score = 27.3 bits (59), Expect = 3.0
Identities = 12/35 (34%), Positives = 21/35 (59%)
Query: 27 GAKIVVIGVGGGGSNMIKHLVEYGVHQDVTPIATN 61
GA++VVIG G G++ + L+ G+ ++ I N
Sbjct: 6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN 40
>pdb|1LDN|A Chain A, L-Lactate Dehydrogenase (E.C.1.1.1.27) Complexed With
Nadh, Oxamate, And Fructose-1,6-Bisphosphate
pdb|1LDN|B Chain B, L-Lactate Dehydrogenase (E.C.1.1.1.27) Complexed With
Nadh, Oxamate, And Fructose-1,6-Bisphosphate
pdb|1LDN|C Chain C, L-Lactate Dehydrogenase (E.C.1.1.1.27) Complexed With
Nadh, Oxamate, And Fructose-1,6-Bisphosphate
pdb|1LDN|D Chain D, L-Lactate Dehydrogenase (E.C.1.1.1.27) Complexed With
Nadh, Oxamate, And Fructose-1,6-Bisphosphate
pdb|1LDN|E Chain E, L-Lactate Dehydrogenase (E.C.1.1.1.27) Complexed With
Nadh, Oxamate, And Fructose-1,6-Bisphosphate
pdb|1LDN|F Chain F, L-Lactate Dehydrogenase (E.C.1.1.1.27) Complexed With
Nadh, Oxamate, And Fructose-1,6-Bisphosphate
pdb|1LDN|G Chain G, L-Lactate Dehydrogenase (E.C.1.1.1.27) Complexed With
Nadh, Oxamate, And Fructose-1,6-Bisphosphate
pdb|1LDN|H Chain H, L-Lactate Dehydrogenase (E.C.1.1.1.27) Complexed With
Nadh, Oxamate, And Fructose-1,6-Bisphosphate
Length = 316
Score = 27.3 bits (59), Expect = 3.0
Identities = 12/35 (34%), Positives = 21/35 (59%)
Query: 27 GAKIVVIGVGGGGSNMIKHLVEYGVHQDVTPIATN 61
GA++VVIG G G++ + L+ G+ ++ I N
Sbjct: 6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN 40
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor
N-Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 26.9 bits (58), Expect = 3.9
Identities = 38/146 (26%), Positives = 56/146 (38%), Gaps = 9/146 (6%)
Query: 10 YNIGQASIEEVSDPAYKGAKIVVIGVGGGGSNMIKHLVEYGVHQDVTPIATNTDGQHLKN 69
Y I ++V YKGA + V + G ++ L G V+ + NTDG
Sbjct: 6 YGIPLIKADKVQAQGYKGANVKVGIIDTGIASSHTDLKVVGGASFVSGESYNTDGNGHGT 65
Query: 70 NPAPVKILLGKESTGGLG-AGGIPDIGRKAAEESANEIKEAIKDA-------KLVIISTG 121
+ A L +TG LG A + K S + AI L +I+
Sbjct: 66 HVAGTVAAL-DNTTGVLGVAPNVSLYAIKVLNSSGSGSYSAIVSGIEWATQNGLDVINMS 124
Query: 122 LGGGTGTGATPTIVKIAKEVGALTIA 147
LGG +G+ A V A G + +A
Sbjct: 125 LGGPSGSTALKQAVDKAYASGIVVVA 150
>pdb|1D2M|A Chain A, Uvrb Protein Of Thermus Thermophilus Hb8; A Nucleotide
Excision Repair Enzyme
Length = 665
Score = 26.2 bits (56), Expect = 6.6
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Query: 108 EAIKDAKLVIISTGLGGGTGTGATPTIVKIAKEVG--ALTIA 147
EA++D + + L G TGTG T T+ K+ + +G AL +A
Sbjct: 23 EALRDGERFVT---LLGATGTGKTVTMAKVIEALGRPALVLA 61
>pdb|1E4D|C Chain C, Structure Of Oxa10 Beta-Lactamase At Ph 8.3
pdb|1E4D|D Chain D, Structure Of Oxa10 Beta-Lactamase At Ph 8.3
pdb|1K55|A Chain A, Oxa 10 Class D Beta-Lactamase At Ph 7.5
pdb|1K55|B Chain B, Oxa 10 Class D Beta-Lactamase At Ph 7.5
pdb|1K57|B Chain B, Oxa 10 Class D Beta-Lactamase At Ph 6.0
pdb|1K56|B Chain B, Oxa 10 Class D Beta-Lactamase At Ph 6.5
pdb|1E4D|B Chain B, Structure Of Oxa10 Beta-Lactamase At Ph 8.3
pdb|1K56|A Chain A, Oxa 10 Class D Beta-Lactamase At Ph 6.5
pdb|1E4D|A Chain A, Structure Of Oxa10 Beta-Lactamase At Ph 8.3
pdb|1K57|A Chain A, Oxa 10 Class D Beta-Lactamase At Ph 6.0
pdb|1K54|B Chain B, Oxa-10 Class D Beta-Lactamase Partially Acylated With
Reacted 6beta-(1-Hydroxy-1-Methylethyl) Penicillanic
Acid
pdb|1K54|A Chain A, Oxa-10 Class D Beta-Lactamase Partially Acylated With
Reacted 6beta-(1-Hydroxy-1-Methylethyl) Penicillanic
Acid
Length = 246
Score = 26.2 bits (56), Expect = 6.6
Identities = 15/38 (39%), Positives = 19/38 (49%), Gaps = 1/38 (2%)
Query: 122 LGGGTGTGATPTIVKIAKEVGALTIAIVTKPFKYEGNQ 159
L G A P +IA+EVG + + K F Y GNQ
Sbjct: 88 LRGAIQVSAVPVFQQIAREVGEVRMQKYLKKFSY-GNQ 124
>pdb|1K4F|B Chain B, Crystal Structure Of The Class D Beta-Lactamase Oxa-10 At
1.6 A Resolution
pdb|1K4F|A Chain A, Crystal Structure Of The Class D Beta-Lactamase Oxa-10 At
1.6 A Resolution
Length = 248
Score = 26.2 bits (56), Expect = 6.6
Identities = 15/38 (39%), Positives = 19/38 (49%), Gaps = 1/38 (2%)
Query: 122 LGGGTGTGATPTIVKIAKEVGALTIAIVTKPFKYEGNQ 159
L G A P +IA+EVG + + K F Y GNQ
Sbjct: 90 LRGAIQVSAVPVFQQIAREVGEVRMQKYLKKFSY-GNQ 126
>pdb|1H5X|A Chain A, Crystal Structure Of The Class D Beta-Lactamase Oxa-13
Complexed With Imipenem
pdb|1H5X|B Chain B, Crystal Structure Of The Class D Beta-Lactamase Oxa-13
Complexed With Imipenem
pdb|1H8Y|A Chain A, Crystal Structure Of The Class D Beta-Lactamase Oxa-13 In
Complex With Meropenem
pdb|1H8Y|B Chain B, Crystal Structure Of The Class D Beta-Lactamase Oxa-13 In
Complex With Meropenem
pdb|1H8Z|A Chain A, Crystal Structure Of The Class D Beta-Lactamase Oxa-13
pdb|1H8Z|B Chain B, Crystal Structure Of The Class D Beta-Lactamase Oxa-13
Length = 247
Score = 26.2 bits (56), Expect = 6.6
Identities = 15/38 (39%), Positives = 19/38 (49%), Gaps = 1/38 (2%)
Query: 122 LGGGTGTGATPTIVKIAKEVGALTIAIVTKPFKYEGNQ 159
L G A P +IA+EVG + + K F Y GNQ
Sbjct: 89 LRGAIQVSAVPVFQQIAREVGEVRMQKYLKKFSY-GNQ 125
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
Length = 758
Score = 26.2 bits (56), Expect = 6.6
Identities = 32/104 (30%), Positives = 49/104 (46%), Gaps = 13/104 (12%)
Query: 89 GGI-PDIGR-KAAEESANEIKEAIKDAKLVI---------ISTGLGGGTGTGATPTIVKI 137
GGI P IGR K E + + K+ L++ I+ GL G P ++
Sbjct: 183 GGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMAD 242
Query: 138 AKEVGALTIAIVTKPFKYEGNQKRKRAEEGLKELEQSSDSILVI 181
+ +L I + KY G+ + KR + LK+LEQ ++SIL I
Sbjct: 243 CT-IYSLDIGSLLAGTKYRGDFE-KRFKALLKQLEQDTNSILFI 284
>pdb|1E3U|B Chain B, Mad Structure Of Oxa10 Class D Beta-Lactamase
pdb|1E3U|A Chain A, Mad Structure Of Oxa10 Class D Beta-Lactamase
pdb|1K57|C Chain C, Oxa 10 Class D Beta-Lactamase At Ph 6.0
pdb|1K54|D Chain D, Oxa-10 Class D Beta-Lactamase Partially Acylated With
Reacted 6beta-(1-Hydroxy-1-Methylethyl) Penicillanic
Acid
pdb|1EWZ|A Chain A, Crystal Structure Of The Oxa-10 Beta-Lactamase From
Pseudomonas Aeruginosa
pdb|1EWZ|B Chain B, Crystal Structure Of The Oxa-10 Beta-Lactamase From
Pseudomonas Aeruginosa
pdb|1E3U|C Chain C, Mad Structure Of Oxa10 Class D Beta-Lactamase
pdb|1K57|D Chain D, Oxa 10 Class D Beta-Lactamase At Ph 6.0
pdb|1K56|D Chain D, Oxa 10 Class D Beta-Lactamase At Ph 6.5
pdb|1EWZ|C Chain C, Crystal Structure Of The Oxa-10 Beta-Lactamase From
Pseudomonas Aeruginosa
pdb|1K54|C Chain C, Oxa-10 Class D Beta-Lactamase Partially Acylated With
Reacted 6beta-(1-Hydroxy-1-Methylethyl) Penicillanic
Acid
pdb|1EWZ|D Chain D, Crystal Structure Of The Oxa-10 Beta-Lactamase From
Pseudomonas Aeruginosa
Length = 246
Score = 26.2 bits (56), Expect = 6.6
Identities = 15/38 (39%), Positives = 19/38 (49%), Gaps = 1/38 (2%)
Query: 122 LGGGTGTGATPTIVKIAKEVGALTIAIVTKPFKYEGNQ 159
L G A P +IA+EVG + + K F Y GNQ
Sbjct: 88 LRGAIQVSAVPVFQQIAREVGEVRMQKYLKKFSY-GNQ 124
>pdb|1C4O|A Chain A, Crystal Structure Of The Dna Nucleotide Excision Repair
Enzyme Uvrb From Thermus Thermophilus
Length = 664
Score = 26.2 bits (56), Expect = 6.6
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Query: 108 EAIKDAKLVIISTGLGGGTGTGATPTIVKIAKEVG--ALTIA 147
EA++D + + L G TGTG T T+ K+ + +G AL +A
Sbjct: 22 EALRDGERFVT---LLGATGTGKTVTMAKVIEALGRPALVLA 60
>pdb|1FOF|A Chain A, Crystal Structure Of The Class D Beta-Lactamase Oxa-10
pdb|1FOF|B Chain B, Crystal Structure Of The Class D Beta-Lactamase Oxa-10
Length = 246
Score = 26.2 bits (56), Expect = 6.6
Identities = 15/38 (39%), Positives = 19/38 (49%), Gaps = 1/38 (2%)
Query: 122 LGGGTGTGATPTIVKIAKEVGALTIAIVTKPFKYEGNQ 159
L G A P +IA+EVG + + K F Y GNQ
Sbjct: 89 LRGAIQVSAVPVFQQIAREVGEVRMQKYLKKFSY-GNQ 125
>pdb|1K55|C Chain C, Oxa 10 Class D Beta-Lactamase At Ph 7.5
pdb|1K55|D Chain D, Oxa 10 Class D Beta-Lactamase At Ph 7.5
Length = 247
Score = 26.2 bits (56), Expect = 6.6
Identities = 15/38 (39%), Positives = 19/38 (49%), Gaps = 1/38 (2%)
Query: 122 LGGGTGTGATPTIVKIAKEVGALTIAIVTKPFKYEGNQ 159
L G A P +IA+EVG + + K F Y GNQ
Sbjct: 89 LRGAIQVSAVPVFQQIAREVGEVRMQKYLKKFSY-GNQ 125
>pdb|1K56|C Chain C, Oxa 10 Class D Beta-Lactamase At Ph 6.5
Length = 237
Score = 26.2 bits (56), Expect = 6.6
Identities = 15/38 (39%), Positives = 19/38 (49%), Gaps = 1/38 (2%)
Query: 122 LGGGTGTGATPTIVKIAKEVGALTIAIVTKPFKYEGNQ 159
L G A P +IA+EVG + + K F Y GNQ
Sbjct: 79 LRGAIQVSAVPVFQQIAREVGEVRMQKYLKKFSY-GNQ 115
>pdb|1E3U|D Chain D, Mad Structure Of Oxa10 Class D Beta-Lactamase
Length = 246
Score = 26.2 bits (56), Expect = 6.6
Identities = 15/38 (39%), Positives = 19/38 (49%), Gaps = 1/38 (2%)
Query: 122 LGGGTGTGATPTIVKIAKEVGALTIAIVTKPFKYEGNQ 159
L G A P +IA+EVG + + K F Y GNQ
Sbjct: 88 LRGAIQVSAVPVFQQIAREVGEVRMQKYLKKFSY-GNQ 124
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.312 0.133 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,257,438
Number of Sequences: 13198
Number of extensions: 98650
Number of successful extensions: 294
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 282
Number of HSP's gapped (non-prelim): 24
length of query: 385
length of database: 2,899,336
effective HSP length: 90
effective length of query: 295
effective length of database: 1,711,516
effective search space: 504897220
effective search space used: 504897220
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)