BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645596|ref|NP_207772.1| exonuclease VII-like
protein (xseA) [Helicobacter pylori 26695]
(121 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1GOF| Galactose Oxidase (E.C.1.1.3.9) (Ph 4.5) >gi|49... 32 0.015
pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of G... 32 0.015
pdb|1K90|C Chain C, Crystal Structure Of The Edema Factor W... 24 5.4
pdb|1D0N|A Chain A, The Crystal Structure Of Calcium-Free E... 23 7.1
pdb|1I85|A Chain A, Crystal Structure Of The Ctla-4B7-2 Com... 23 9.2
>pdb|1GOF| Galactose Oxidase (E.C.1.1.3.9) (Ph 4.5)
pdb|1GOG| Galactose Oxidase (E.C.1.1.3.9) (Ph 7.0)
pdb|1GOH| Galactose Oxidase (E.C.1.1.3.9) (Apo Form)
Length = 639
Score = 32.3 bits (72), Expect = 0.015
Identities = 22/79 (27%), Positives = 35/79 (43%), Gaps = 3/79 (3%)
Query: 13 TCKKTLFKSYGYYLARTFSMSAIGHESDFLLSD---LVADLRASTPSNAMEILLPNSDEW 69
T T+F S G Y ARTF S + + ++ STP EI +P D +
Sbjct: 424 TSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTF 483
Query: 70 LQKLDGFNVKLHRSFKILL 88
++ V+++ S +LL
Sbjct: 484 YKQNPNSIVRVYHSISLLL 502
>pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
Length = 656
Score = 32.3 bits (72), Expect = 0.015
Identities = 22/79 (27%), Positives = 35/79 (43%), Gaps = 3/79 (3%)
Query: 13 TCKKTLFKSYGYYLARTFSMSAIGHESDFLLSD---LVADLRASTPSNAMEILLPNSDEW 69
T T+F S G Y ARTF S + + ++ STP EI +P D +
Sbjct: 441 TSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTF 500
Query: 70 LQKLDGFNVKLHRSFKILL 88
++ V+++ S +LL
Sbjct: 501 YKQNPNSIVRVYHSISLLL 519
>pdb|1K90|C Chain C, Crystal Structure Of The Edema Factor With Calmodulin And
3'-Datp
pdb|1K93|C Chain C, Crystal Structure Of Edema Factor Complexed With
Calmodulin
pdb|1K8T|A Chain A, Crystal Structure Analysis Of The Edema Factor
pdb|1K90|A Chain A, Crystal Structure Of The Edema Factor With Calmodulin And
3'-Datp
pdb|1K93|A Chain A, Crystal Structure Of Edema Factor Complexed With
Calmodulin
pdb|1K93|B Chain B, Crystal Structure Of Edema Factor Complexed With
Calmodulin
pdb|1K90|B Chain B, Crystal Structure Of The Edema Factor With Calmodulin And
3'-Datp
Length = 510
Score = 23.9 bits (50), Expect = 5.4
Identities = 21/101 (20%), Positives = 44/101 (42%), Gaps = 21/101 (20%)
Query: 20 KSYGYYLARTFSMSAIGHESDFLLSDLVADLRASTPSNAMEILLPNSDEWLQKLDGFNVK 79
K Y YY R+++ A G+++ +D + + +T +P S E+++ L
Sbjct: 332 KDYLYYFNRSYNKIAPGNKAYIEWTDPITKAKINT--------IPTSAEFIKNLS----S 379
Query: 80 LHRSFKILLHQ---------KKAHLEHLADFLEKRNYPVNH 111
+ RS + +++ KK ++ +A +L NH
Sbjct: 380 IRRSSNVGVYKDSGDKDEFAKKESVKKIAGYLSDYYNSANH 420
>pdb|1D0N|A Chain A, The Crystal Structure Of Calcium-Free Equine Plasma
Gelsolin.
pdb|1D0N|B Chain B, The Crystal Structure Of Calcium-Free Equine Plasma
Gelsolin
Length = 729
Score = 23.5 bits (49), Expect = 7.1
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 88 LHQKKAHLEHLADFLEKRNYP 108
+ ++KA L+ +DF+ K +YP
Sbjct: 299 MEERKAALKTASDFISKMDYP 319
>pdb|1I85|A Chain A, Crystal Structure Of The Ctla-4B7-2 Complex
pdb|1I85|B Chain B, Crystal Structure Of The Ctla-4B7-2 Complex
Length = 110
Score = 23.1 bits (48), Expect = 9.2
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 65 NSDEWLQKLDGFNVKLHRSFKILLHQKK 92
+SD W +L +K ++ ++H KK
Sbjct: 65 DSDSWTLRLHNLQIKDKGLYQCIIHHKK 92
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 693,727
Number of Sequences: 13198
Number of extensions: 23385
Number of successful extensions: 35
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 5
length of query: 121
length of database: 2,899,336
effective HSP length: 77
effective length of query: 44
effective length of database: 1,883,090
effective search space: 82855960
effective search space used: 82855960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)