BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644729|ref|NP_206899.1| methyl-accepting chemotaxis
protein (tlpA) [Helicobacter pylori 26695]
(675 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1QU7|A Chain A, Four Helical-Bundle Structure Of The Cy... 98 3e-21
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 36 0.012
pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck >gi|2... 32 0.18
pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey D... 32 0.23
pdb|1AIN| Annexin I 32 0.30
pdb|1EF0|A Chain A, Crystal Structure Of Pi-Scei Miniprecur... 30 0.67
pdb|1VDE|A Chain A, Pi-Scei, A Homing Endonuclease With Pro... 30 0.67
pdb|1GPP|A Chain A, Crystal Structure Of The S.Cerevisiae H... 30 0.88
pdb|1BG1|A Chain A, Three-Dimensional Structure Of The Stat... 28 2.6
pdb|1KWP|A Chain A, Crystal Structure Of Mapkap2 >gi|241587... 28 2.6
pdb|1HM6|A Chain A, X-Ray Structure Of Full-Length Annexin ... 28 3.3
pdb|1JQ5|A Chain A, Bacillus Stearothermophilus Glycerol De... 28 3.3
pdb|1HRY|A Chain A, The 3d Structure Of The Human Sry-Dna C... 28 4.4
pdb|1J46|A Chain A, 3d Solution Nmr Structure Of The Wild T... 28 4.4
pdb|1JYA|B Chain B, Crystal Structure Of Syce >gi|16974957|... 28 4.4
pdb|1J47|A Chain A, 3d Solution Nmr Structure Of The M9i Mu... 28 4.4
pdb|1JVA|A Chain A, Crystal Structure Of The Vma1-Derived E... 28 4.4
pdb|1L2W|A Chain A, Crystal Structure Of The Yersinia Virul... 28 4.4
pdb|1K6Z|A Chain A, Crystal Structure Of The Yersinia Secre... 28 4.4
pdb|1MD1|A Chain A, Crystal Structure Of The Yersinia Enter... 28 4.4
pdb|1FEZ|A Chain A, The Crystal Structure Of Bacillus Cereu... 27 5.7
pdb|1KWI|A Chain A, Crystal Structure Analysis Of The Cathe... 27 7.4
pdb|1JQG|A Chain A, Crystal Structure Of The Carboxypeptida... 27 9.7
pdb|3DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenas... 27 9.7
pdb|4BLM|A Chain A, Beta-Lactamase (E.C.3.5.2.6) (Penicilli... 27 9.7
pdb|2DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenas... 27 9.7
pdb|1JIL|A Chain A, Crystal Structure Of S. Aureus Tyrrs In... 27 9.7
>pdb|1QU7|A Chain A, Four Helical-Bundle Structure Of The Cytoplasmic Domain Of
A Serine Chemotaxis Receptor
pdb|1QU7|B Chain B, Four Helical-Bundle Structure Of The Cytoplasmic Domain Of
A Serine Chemotaxis Receptor
Length = 227
Score = 97.8 bits (242), Expect = 3e-21
Identities = 66/177 (37%), Positives = 105/177 (59%), Gaps = 13/177 (7%)
Query: 495 SANLKECVQNLEKASN---SQHKSLMETSKTIENITTSIQGVSSQSEAMIEQGQDIKSIV 551
+A +K+ +N +AS+ S ++ K ++N+ +++ +S+ S Q I I+
Sbjct: 20 TATVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDISTSS-------QKIADII 72
Query: 552 EIIRDIADQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAERTQKSLSEIEANINILV 611
+I IA QTN+LALNAA+EAARAGE GRGFAVVA EVR LA+R+ ++ EI++ I V
Sbjct: 73 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAREIKSLIEDSV 132
Query: 612 QSISDTSESIKNQVKEVEEINASIEALRSVTEGNLKIASDSLEISQEIDKVSNDILE 668
+ S +++ + + EI + A+ VT+ +IAS S E S+ ID+V + E
Sbjct: 133 GKVDVGSTLVESAGETMAEI---VSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAE 186
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 36.2 bits (82), Expect = 0.012
Identities = 41/186 (22%), Positives = 78/186 (41%), Gaps = 13/186 (6%)
Query: 471 NALGQEIQKMLETSSNFAKDLANDSANLKECVQNLEKASNSQHKSLMETSKTIENITTSI 530
N L +E +K+LE DL + A +E +NL K N + E ++ S
Sbjct: 1000 NKLTKE-RKLLEER---VSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSR 1055
Query: 531 QGVSSQSEAMIEQGQDI-KSIVEIIRDIADQTNLLALNAAIEAARAGEHGRGFAVVADEV 589
Q + + + D+ + I E+ IA+ L A + A + E A + DE
Sbjct: 1056 QELEKIKRKLEGESSDLHEQIAELQAQIAE------LKAQL-AKKEEELQAALARLEDET 1108
Query: 590 RKLAERTQKSLSEIEANINILVQSISDTSESIKNQVKEVEEINASIEALRSVTEGNLKIA 649
+ K + E+E++I+ L + + + K+ +++ +EAL++ E L
Sbjct: 1109 SQ-KNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTT 1167
Query: 650 SDSLEI 655
+ E+
Sbjct: 1168 ATQQEL 1173
>pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck
pdb|1AUW|B Chain B, H91n Delta 2 Crystallin From Duck
pdb|1AUW|C Chain C, H91n Delta 2 Crystallin From Duck
pdb|1AUW|D Chain D, H91n Delta 2 Crystallin From Duck
Length = 468
Score = 32.3 bits (72), Expect = 0.18
Identities = 55/254 (21%), Positives = 109/254 (42%), Gaps = 37/254 (14%)
Query: 306 IASAIMVLALIIAITLLMRAIVSSRLEAVSSTLSHFFKLLNNQANSSGIKLIEAKSNDE- 364
I+ V+ + TLLM + + + + S F L ++ A S+G L+ K N +
Sbjct: 235 ISERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSEFGFLTDSDAFSTGSSLMPQKKNPDS 294
Query: 365 -----------LGRMQT--AINKNILQT-QKIMQEDRQAVQDTIKVVSDVKAGNFAVRIT 410
GR+ + + K + T K +QED++AV D + ++ V V T
Sbjct: 295 LELIRSKAGRVFGRLASILMVLKGLPSTYNKDLQEDKEAVFDVVDTLTAVLQVATGVIST 354
Query: 411 AEPASPDLKELRDALNGIMDYLQESVGTHMPSIFKIFESYSGLDFRGRIQNASGRVELVT 470
+ + ++++ AL M + + ++ G+ FR + ASG+ +
Sbjct: 355 LQISKENMEK---ALTPEM----------LATDLALYLVRKGVPFR-QAHTASGKAVHLA 400
Query: 471 NALGQEIQKM-LETSSNFAKDLANDSANLKECVQNLEKASNSQHKSLMETSKTIENITTS 529
G I K+ LE + + ++D + + V ++E Q+ +L T+K+ ++TT
Sbjct: 401 ETKGITINKLSLEDLKSISPQFSSDVSQVFNFVNSVE-----QYTALGGTAKS--SVTTQ 453
Query: 530 IQGVSSQSEAMIEQ 543
I+ + + EQ
Sbjct: 454 IEQLRELMKKQKEQ 467
>pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|C Chain C, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|B Chain B, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|D Chain D, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 32.0 bits (71), Expect = 0.23
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 15/110 (13%)
Query: 306 IASAIMVLALIIAITLLM--------RAIVSSRLEAVSSTLSHFF----KLLNNQANSSG 353
I+ V+ LI TLLM I+ S E TLS + LL + N
Sbjct: 233 ISERDFVVELISVATLLMIHLSKLAEDLIIFSTTEFGFVTLSDAYSTGSSLLPQKKNPDS 292
Query: 354 IKLIEAKSNDELGRMQT--AINKNILQT-QKIMQEDRQAVQDTIKVVSDV 400
++LI +K+ GR+ + K I T K +QED++AV D + ++ V
Sbjct: 293 LELIRSKAGRVFGRLAAILMVLKGIPSTFSKDLQEDKEAVLDVVDTLTAV 342
>pdb|1AIN| Annexin I
Length = 314
Score = 31.6 bits (70), Expect = 0.30
Identities = 35/163 (21%), Positives = 65/163 (39%), Gaps = 30/163 (18%)
Query: 355 KLIEAKSNDELGRMQTAINKNILQTQKI----MQEDRQAVQDTIKVVSDVKAGNFAVRIT 410
K I K DE + +N Q Q+I +QE + + +T+K + +
Sbjct: 21 KAIMVKGVDEATIIDILTKRNNAQRQQIKAAYLQETGKPLDETLKKALTGHLEEVVLALL 80
Query: 411 AEPASPDLKELRDALNGIMDYLQESVGTHMPSIFKIFESYSGLDFRGRIQNASGRVELVT 470
PA D ELR A+ G+ GT ++ +I S + + R +
Sbjct: 81 KTPAQFDADELRAAMKGL--------GTDEDTLIEILASRTNKEIRD-----------IN 121
Query: 471 NALGQEIQKMLETSSNFAKDLAND-SANLKECVQNLEKASNSQ 512
+E+++ + AKD+ +D S + + + +L K S+
Sbjct: 122 RVYREELKR------DLAKDITSDTSGDFRNALLSLAKGDRSE 158
>pdb|1EF0|A Chain A, Crystal Structure Of Pi-Scei Miniprecursor
pdb|1EF0|B Chain B, Crystal Structure Of Pi-Scei Miniprecursor
Length = 462
Score = 30.4 bits (67), Expect = 0.67
Identities = 25/126 (19%), Positives = 57/126 (44%), Gaps = 7/126 (5%)
Query: 437 GTHMPSIFKIFESYSGLDFRGRIQNASGRV-ELVTNALGQEIQKMLETSSNFAKDLANDS 495
GT++ E ++ ++ GR E++ G+E + S A+ S
Sbjct: 9 GTNVLMADGSIECIENIEVGNKVMGKDGRPREVIKLPRGRETMYSVVQKSQHR---AHKS 65
Query: 496 ANLKECVQNLEKASNSQHKSLMETSKTIENITTSIQGVSSQSEAMIEQGQDIK---SIVE 552
+ +E + L+ N+ H+ ++ T +++ ++ +I+GV E GQ IVE
Sbjct: 66 DSSREVPELLKFTCNATHELVVRTPRSVRRLSRTIKGVEYFEVITFEMGQKKAPDGRIVE 125
Query: 553 IIRDIA 558
++++++
Sbjct: 126 LVKEVS 131
>pdb|1VDE|A Chain A, Pi-Scei, A Homing Endonuclease With Protein Splicing
Activity
pdb|1VDE|B Chain B, Pi-Scei, A Homing Endonuclease With Protein Splicing
Activity
pdb|1DFA|A Chain A, Crystal Structure Of Pi-Scei In C2 Space Group
Length = 454
Score = 30.4 bits (67), Expect = 0.67
Identities = 25/126 (19%), Positives = 57/126 (44%), Gaps = 7/126 (5%)
Query: 437 GTHMPSIFKIFESYSGLDFRGRIQNASGRV-ELVTNALGQEIQKMLETSSNFAKDLANDS 495
GT++ E ++ ++ GR E++ G+E + S A+ S
Sbjct: 5 GTNVLMADGSIECIENIEVGNKVMGKDGRPREVIKLPRGRETMYSVVQKSQHR---AHKS 61
Query: 496 ANLKECVQNLEKASNSQHKSLMETSKTIENITTSIQGVSSQSEAMIEQGQDIK---SIVE 552
+ +E + L+ N+ H+ ++ T +++ ++ +I+GV E GQ IVE
Sbjct: 62 DSSREVPELLKFTCNATHELVVRTPRSVRRLSRTIKGVEYFEVITFEMGQKKAPDGRIVE 121
Query: 553 IIRDIA 558
++++++
Sbjct: 122 LVKEVS 127
>pdb|1GPP|A Chain A, Crystal Structure Of The S.Cerevisiae Homing Endonuclease
Pi-Scei Domain I
Length = 237
Score = 30.0 bits (66), Expect = 0.88
Identities = 25/126 (19%), Positives = 56/126 (43%), Gaps = 7/126 (5%)
Query: 437 GTHMPSIFKIFESYSGLDFRGRIQNASGRV-ELVTNALGQEIQKMLETSSNFAKDLANDS 495
GT++ E ++ ++ GR E++ G E + S A+ S
Sbjct: 15 GTNVLMADGSIECIENIEVGNKVMGKDGRPREVIKLPRGSETMYSVVQKSQHR---AHKS 71
Query: 496 ANLKECVQNLEKASNSQHKSLMETSKTIENITTSIQGVSSQSEAMIEQGQDIK---SIVE 552
+ +E + L+ N+ H+ ++ T +++ ++ +I+GV E GQ IVE
Sbjct: 72 DSSREMPELLKFTCNATHELVVRTPRSVRRLSRTIKGVEYFEVITFEMGQKKAPDGRIVE 131
Query: 553 IIRDIA 558
++++++
Sbjct: 132 LVKEVS 137
>pdb|1BG1|A Chain A, Three-Dimensional Structure Of The Stat3b Homodimer Bound
To Dna
Length = 722
Score = 28.5 bits (62), Expect = 2.6
Identities = 35/177 (19%), Positives = 79/177 (43%), Gaps = 17/177 (9%)
Query: 464 GRVELVTNALGQEIQKMLETSSNFAKDLANDSANLKECVQNLEKASNSQHKSLMETSKTI 523
G+ T A+ E Q+MLE + D + V+NL+ + +K+L ++ +
Sbjct: 127 GQANHPTAAVVTEKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTL-KSQGDM 185
Query: 524 ENITTSIQGVSSQSEAMIEQGQDIKSIVEIIRDIADQTNLLALNAAIEAARAGEHGRGFA 583
+++ + Q V+ Q +E Q + ++ ++ R I + L L +A+E +
Sbjct: 186 QDLNGNNQSVTRQKMQQLE--QMLTALDQMRRSIVSE--LAGLLSAMEYVQK-------T 234
Query: 584 VVADEVRKLAERTQKSLSEIEANINI-----LVQSISDTSESIKNQVKEVEEINASI 635
+ +E+ R Q + NI + + S++++ + Q+K++EE+ +
Sbjct: 235 LTDEELADWKRRQQIACIGGPPNICLDRLENWITSLAESQLQTRQQIKKLEELQQKV 291
>pdb|1KWP|A Chain A, Crystal Structure Of Mapkap2
pdb|1KWP|B Chain B, Crystal Structure Of Mapkap2
Length = 400
Score = 28.5 bits (62), Expect = 2.6
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 197 KNRSDLFLIGTKGKVLLSANKSLQDKPIAEIYKSVPKATNEV 238
K S + +G GKVL NK Q+K ++ + PKA EV
Sbjct: 64 KVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREV 105
>pdb|1HM6|A Chain A, X-Ray Structure Of Full-Length Annexin 1
pdb|1HM6|B Chain B, X-Ray Structure Of Full-Length Annexin 1
Length = 346
Score = 28.1 bits (61), Expect = 3.3
Identities = 36/165 (21%), Positives = 65/165 (38%), Gaps = 34/165 (20%)
Query: 355 KLIEAKSNDELGRMQTAINKNILQTQKI----MQEDRQAVQDTIKVVSDVKAGNFAVRIT 410
K I K DE ++ + Q Q+I +QE + + + +K A+ +
Sbjct: 53 KAITVKGVDEATIIEILTKRTNAQRQQIKAAYLQEKGKPLDEALKKALTGHLEEVALALL 112
Query: 411 AEPASPDLKELRDALNGIMDYLQESVGTHMPSIFKIFESYSGLDFRGRIQNASGRVELVT 470
PA D ELR A+ G+ GT ++ +I S + + R
Sbjct: 113 KTPAQFDADELRAAMKGL--------GTDEDTLNEILASRTNREIR-------------- 150
Query: 471 NALGQEIQKML--ETSSNFAKDLAND-SANLKECVQNLEKASNSQ 512
EI ++ E + AKD+ +D S + ++ + +L K S+
Sbjct: 151 -----EINRVYKEELKRDLAKDITSDTSGDYQKALLSLAKGDRSE 190
>pdb|1JQ5|A Chain A, Bacillus Stearothermophilus Glycerol Dehydrogenase Complex
With Nad+
pdb|1JPU|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Glycerol
Dehydrogenase
pdb|1JQA|A Chain A, Bacillus Stearothermophilus Glycerol Dehydrogenase Complex
With Glycerol
Length = 370
Score = 28.1 bits (61), Expect = 3.3
Identities = 22/83 (26%), Positives = 41/83 (48%), Gaps = 4/83 (4%)
Query: 579 GRGFAVVADE-VRKLAERTQKSLSEIEANINILVQSISDTSESIKNQVKEVEEINASIEA 637
G V+ADE V K+A T ++E++ NI + + + E+ +N+V+ + I EA
Sbjct: 31 GNKTVVIADEIVWKIAGHT--IVNELKKG-NIAAEEVVFSGEASRNEVERIANIARKAEA 87
Query: 638 LRSVTEGNLKIASDSLEISQEID 660
+ G K + ++ E+D
Sbjct: 88 AIVIGVGGGKTLDTAKAVADELD 110
>pdb|1HRY|A Chain A, The 3d Structure Of The Human Sry-Dna Complex Solved By
Multid-Dimensional Heteronuclear-Edited And -Filtered
Nmr
pdb|1HRZ|A Chain A, The 3d Structure Of The Human Sry-Dna Complex Solved By
Multid-Dimensional Heteronuclear-Edited And -Filtered
Nmr
Length = 76
Score = 27.7 bits (60), Expect = 4.4
Identities = 18/44 (40%), Positives = 20/44 (44%), Gaps = 10/44 (22%)
Query: 117 RDNNTIKLVENPSLENSPLAQKAMKNKEISKSLGYYRKMPNGAE 160
RD +ENP M+N EISK LGY KM AE
Sbjct: 17 RDQRRKMALENPR----------MRNSEISKQLGYQWKMLTEAE 50
>pdb|1J46|A Chain A, 3d Solution Nmr Structure Of The Wild Type Hmg-Box Domain
Of The Human Male Sex Determining Factor Sry Complexed
To Dna
Length = 85
Score = 27.7 bits (60), Expect = 4.4
Identities = 18/44 (40%), Positives = 20/44 (44%), Gaps = 10/44 (22%)
Query: 117 RDNNTIKLVENPSLENSPLAQKAMKNKEISKSLGYYRKMPNGAE 160
RD +ENP M+N EISK LGY KM AE
Sbjct: 17 RDQRRKMALENPR----------MRNSEISKQLGYQWKMLTEAE 50
>pdb|1JYA|B Chain B, Crystal Structure Of Syce
pdb|1JYA|A Chain A, Crystal Structure Of Syce
Length = 130
Score = 27.7 bits (60), Expect = 4.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 381 KIMQEDRQAVQDTIKVVSDVKAGNFAVRITAEP 413
++ Q+ ++ DTI+ V VK G FA IT P
Sbjct: 10 QLFQQLSLSIPDTIEPVIGVKVGEFACHITEHP 42
>pdb|1J47|A Chain A, 3d Solution Nmr Structure Of The M9i Mutant Of The Hmg-Box
Domain Of The Human Male Sex Determining Factor Sry
Complexed To Dna
Length = 85
Score = 27.7 bits (60), Expect = 4.4
Identities = 18/44 (40%), Positives = 20/44 (44%), Gaps = 10/44 (22%)
Query: 117 RDNNTIKLVENPSLENSPLAQKAMKNKEISKSLGYYRKMPNGAE 160
RD +ENP M+N EISK LGY KM AE
Sbjct: 17 RDQRRKMALENPR----------MRNSEISKQLGYQWKMLTEAE 50
>pdb|1JVA|A Chain A, Crystal Structure Of The Vma1-Derived Endonuclease Bearing
The N And C Extein Propeptides
pdb|1JVA|B Chain B, Crystal Structure Of The Vma1-Derived Endonuclease Bearing
The N And C Extein Propeptides
Length = 475
Score = 27.7 bits (60), Expect = 4.4
Identities = 24/126 (19%), Positives = 57/126 (45%), Gaps = 7/126 (5%)
Query: 437 GTHMPSIFKIFESYSGLDFRGRIQNASGRV-ELVTNALGQEIQKMLETSSNFAKDLANDS 495
GT++ E ++ ++ GR E++ G+E + S A+ S
Sbjct: 16 GTNVLMADGSIECIENIEVGNKVMGKDGRPREVIKLPRGRETMYSVVQKSQHR---AHKS 72
Query: 496 ANLKECVQNLEKASNSQHKSLMETSKTIENITTSIQGVSSQSEAMIEQGQDIK---SIVE 552
+ +E + L+ N+ ++ ++ T +++ ++ +I+GV E GQ IVE
Sbjct: 73 DSSREVPELLKFTCNATNELVVRTPRSVRRLSRTIKGVEYFEVITFEMGQKKAPDGRIVE 132
Query: 553 IIRDIA 558
++++++
Sbjct: 133 LVKEVS 138
>pdb|1L2W|A Chain A, Crystal Structure Of The Yersinia Virulence Effector Yope
Chaperone-Binding Domain In Complex With Its Secretion
Chaperone, Syce
pdb|1L2W|B Chain B, Crystal Structure Of The Yersinia Virulence Effector Yope
Chaperone-Binding Domain In Complex With Its Secretion
Chaperone, Syce
pdb|1L2W|C Chain C, Crystal Structure Of The Yersinia Virulence Effector Yope
Chaperone-Binding Domain In Complex With Its Secretion
Chaperone, Syce
pdb|1L2W|D Chain D, Crystal Structure Of The Yersinia Virulence Effector Yope
Chaperone-Binding Domain In Complex With Its Secretion
Chaperone, Syce
pdb|1L2W|E Chain E, Crystal Structure Of The Yersinia Virulence Effector Yope
Chaperone-Binding Domain In Complex With Its Secretion
Chaperone, Syce
pdb|1L2W|F Chain F, Crystal Structure Of The Yersinia Virulence Effector Yope
Chaperone-Binding Domain In Complex With Its Secretion
Chaperone, Syce
pdb|1L2W|G Chain G, Crystal Structure Of The Yersinia Virulence Effector Yope
Chaperone-Binding Domain In Complex With Its Secretion
Chaperone, Syce
pdb|1L2W|H Chain H, Crystal Structure Of The Yersinia Virulence Effector Yope
Chaperone-Binding Domain In Complex With Its Secretion
Chaperone, Syce
Length = 123
Score = 27.7 bits (60), Expect = 4.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 381 KIMQEDRQAVQDTIKVVSDVKAGNFAVRITAEP 413
++ Q+ ++ DTI+ V VK G FA IT P
Sbjct: 11 QLFQQLSLSIPDTIEPVIGVKVGEFACHITEHP 43
>pdb|1K6Z|A Chain A, Crystal Structure Of The Yersinia Secretion Chaperone Syce
pdb|1K6Z|B Chain B, Crystal Structure Of The Yersinia Secretion Chaperone Syce
Length = 141
Score = 27.7 bits (60), Expect = 4.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 381 KIMQEDRQAVQDTIKVVSDVKAGNFAVRITAEP 413
++ Q+ ++ DTI+ V VK G FA IT P
Sbjct: 15 QLFQQLSLSIPDTIEPVIGVKVGEFACHITEHP 47
>pdb|1MD1|A Chain A, Crystal Structure Of The Yersinia Enterocolitica Molecular
Chaperone Syce
pdb|1MD1|B Chain B, Crystal Structure Of The Yersinia Enterocolitica Molecular
Chaperone Syce
pdb|1MD1|C Chain C, Crystal Structure Of The Yersinia Enterocolitica Molecular
Chaperone Syce
pdb|1MD1|D Chain D, Crystal Structure Of The Yersinia Enterocolitica Molecular
Chaperone Syce
Length = 130
Score = 27.7 bits (60), Expect = 4.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 381 KIMQEDRQAVQDTIKVVSDVKAGNFAVRITAEP 413
++ Q+ ++ DTI+ V VK G FA IT P
Sbjct: 10 QLFQQLSLSIPDTIEPVIGVKVGEFACHITEHP 42
>pdb|1FEZ|A Chain A, The Crystal Structure Of Bacillus Cereus
Phosphonoacetaldehyde Hydrolase Complexed With
Tungstate, A Product Analog
pdb|1FEZ|B Chain B, The Crystal Structure Of Bacillus Cereus
Phosphonoacetaldehyde Hydrolase Complexed With
Tungstate, A Product Analog
pdb|1FEZ|C Chain C, The Crystal Structure Of Bacillus Cereus
Phosphonoacetaldehyde Hydrolase Complexed With
Tungstate, A Product Analog
pdb|1FEZ|D Chain D, The Crystal Structure Of Bacillus Cereus
Phosphonoacetaldehyde Hydrolase Complexed With
Tungstate, A Product Analog
Length = 256
Score = 27.3 bits (59), Expect = 5.7
Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 20/135 (14%)
Query: 550 IVEIIRDIADQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLA-------ERTQKSLSE 602
I +I D A T A +E H RG A+ A+E RK R +
Sbjct: 2 IEAVIFDWAGTTVDYGCFAPLEVFMEIFHKRGVAITAEEARKPMGLLKIDHVRALTEMPR 61
Query: 603 IEANINILVQSISDTSESIKNQVKEVEE------------INASIEALRSVTEGNLKIAS 650
I + N + + + T I+ +E EE INA E + S+ E +KI S
Sbjct: 62 IASEWNRVFRQL-PTEADIQEMYEEFEEILFAILPRYASPINAVKEVIASLRERGIKIGS 120
Query: 651 DSLEISQEIDKVSND 665
+ + +D V+ +
Sbjct: 121 TTGYTREMMDIVAKE 135
>pdb|1KWI|A Chain A, Crystal Structure Analysis Of The Cathelicidin Motif Of
Protegrins
pdb|1LXE|A Chain A, Crystal Structure Of The Cathelicidin Motif Of Protegrins
Length = 101
Score = 26.9 bits (58), Expect = 7.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 31 NSRVKEILKESALHSMQDSLHFKVNEVQGV 60
N RVK+ + L ++D L NEVQGV
Sbjct: 72 NGRVKQCVGTVTLDQIKDPLDITCNEVQGV 101
>pdb|1JQG|A Chain A, Crystal Structure Of The Carboxypeptidase A From
Helicoverpa Armigera
Length = 433
Score = 26.6 bits (57), Expect = 9.7
Identities = 16/65 (24%), Positives = 28/65 (42%)
Query: 443 IFKIFESYSGLDFRGRIQNASGRVELVTNALGQEIQKMLETSSNFAKDLANDSANLKECV 502
IF+ F SG+ ++ ++N ++EL L K T S + D + + +
Sbjct: 72 IFENFLKQSGVQYKLEVENVKEQLELEDQLLAAAAAKSNSTRSRLSFDKIHSYEEVDAYL 131
Query: 503 QNLEK 507
Q L K
Sbjct: 132 QELAK 136
>pdb|3DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|4DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
Length = 334
Score = 26.6 bits (57), Expect = 9.7
Identities = 17/86 (19%), Positives = 40/86 (45%), Gaps = 12/86 (13%)
Query: 504 NLEKASNSQHKSLMETSKTIENITTSIQGVSSQSEAMIEQ------GQDIK------SIV 551
N ++ ++ HK L E+I + G + ++ + G ++ S+V
Sbjct: 182 NDQRILDASHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVV 241
Query: 552 EIIRDIADQTNLLALNAAIEAARAGE 577
+++ ++ + + +NAA++AA GE
Sbjct: 242 DLVAELEKEVTVEEVNAALKAAAEGE 267
>pdb|4BLM|A Chain A, Beta-Lactamase (E.C.3.5.2.6) (Penicillinase)
pdb|4BLM|B Chain B, Beta-Lactamase (E.C.3.5.2.6) (Penicillinase)
pdb|2BLM|A Chain A, Beta-Lactamase (Penicillinase) (E.C.3.5.2.6)
pdb|2BLM|B Chain B, Beta-Lactamase (Penicillinase) (E.C.3.5.2.6)
Length = 265
Score = 26.6 bits (57), Expect = 9.7
Identities = 51/214 (23%), Positives = 80/214 (36%), Gaps = 40/214 (18%)
Query: 100 GVSMFFKGREDL--RLTLLRDN---------------NTIKLVENPSLENSPLAQKAMKN 142
GV + K EDL R+T RD+ T+K + + SL S A + +
Sbjct: 52 GVLLQQKSIEDLNQRITYTRDDLVNYNPITEKHVDTGMTLKELADASLRYSDNAAQNLIL 111
Query: 143 KEISKSLGYYRKMPN-GAEVYGVDILLPLLNE----------NAQEVVGALMIFISIDSF 191
K+I +++ G EV + P LNE A+ +V +L F D
Sbjct: 112 KQIGGPESLKKELRKIGDEVTNPERFEPELNEVNPGETQDTSTARALVTSLRAFALEDKL 171
Query: 192 SNEITKNRSDLFLIGTKGKVLLSANK----SLQDKPIAEIYKS--------VPKATNEVM 239
+E + D T G L+ A + DK A Y + PK V+
Sbjct: 172 PSEKRELLIDWMKRNTTGDALIRAGVPDGWEVADKTGAASYGTRNDIAIIWPPKGDPVVL 231
Query: 240 AILENGSKATLEYLDPFSHKENFLAVETFKMLGK 273
A+L + K +Y D + + ++ M GK
Sbjct: 232 AVLSSRDKKDAKYDDKLIAEATKVVMKALNMNGK 265
>pdb|2DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|1DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
Length = 334
Score = 26.6 bits (57), Expect = 9.7
Identities = 17/86 (19%), Positives = 40/86 (45%), Gaps = 12/86 (13%)
Query: 504 NLEKASNSQHKSLMETSKTIENITTSIQGVSSQSEAMIEQ------GQDIK------SIV 551
N ++ ++ HK L E+I + G + ++ + G ++ S+V
Sbjct: 182 NDQRILDASHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVV 241
Query: 552 EIIRDIADQTNLLALNAAIEAARAGE 577
+++ ++ + + +NAA++AA GE
Sbjct: 242 DLVAELEKEVTVEEVNAALKAAAEGE 267
>pdb|1JIL|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb284485
pdb|1JIK|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With Sb-
243545
pdb|1JII|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With Sb-
219383
pdb|1JIJ|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With Sb-
239629
Length = 420
Score = 26.6 bits (57), Expect = 9.7
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 514 KSLMETSKTIENITTSIQGVSSQSEAMIEQGQDIKSIVEIIRDIADQTNLLA 565
KS +T E + +I+G+S Q + E G D +++ RD Q +L++
Sbjct: 84 KSEERVLQTEEQVDKNIEGISKQMHNIFEFGTDHGAVLVNNRDWLGQISLIS 135
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.314 0.130 0.337
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,115,584
Number of Sequences: 13198
Number of extensions: 117765
Number of successful extensions: 349
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 334
Number of HSP's gapped (non-prelim): 28
length of query: 675
length of database: 2,899,336
effective HSP length: 94
effective length of query: 581
effective length of database: 1,658,724
effective search space: 963718644
effective search space used: 963718644
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)