BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645599|ref|NP_207775.1| hypothetical protein
[Helicobacter pylori 26695]
         (35 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1BOO|A  Chain A, Pvuii Dna Methyltransferase (Cytosine-N...    23  9.6

>pdb|1BOO|A Chain A, Pvuii Dna Methyltransferase (Cytosine-N4-Specific)
          Length = 323

 Score = 22.7 bits (47), Expect = 9.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query: 4   YNDKMKEVLNDELTYYLNKT 23
           Y+D+MK+++ D   +Y  KT
Sbjct: 167 YSDRMKKLIEDPDKFYTPKT 186



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.313    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 242,440
Number of Sequences: 13198
Number of extensions: 5303
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 1
length of query: 35
length of database: 2,899,336
effective HSP length: 11
effective length of query: 24
effective length of database: 2,754,158
effective search space: 66099792
effective search space used: 66099792
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)