BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645600|ref|NP_207776.1| hypothetical protein
[Helicobacter pylori 26695]
(107 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1ORD|A Chain A, Mol_id: 1; Molecule: Ornithine Decarbox... 27 0.33
pdb|1C4K|A Chain A, Ornithine Decarboxylase Mutant (Gly121tyr) 27 0.33
pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex 24 2.2
pdb|1G8Y|A Chain A, Crystal Structure Of The Hexameric Repl... 24 2.2
pdb|1JEQ|A Chain A, Crystal Structure Of The Ku Heterodimer... 23 4.8
pdb|1MGP|A Chain A, Hypothetical Protein Tm841 From Thermot... 23 6.3
pdb|1LRZ|A Chain A, X-Ray Crystal Structure Of Staphylococc... 22 8.2
>pdb|1ORD|A Chain A, Mol_id: 1; Molecule: Ornithine Decarboxylase; Chain: A, B;
Ec: 4.1.1.17
pdb|1ORD|B Chain B, Mol_id: 1; Molecule: Ornithine Decarboxylase; Chain: A, B;
Ec: 4.1.1.17
Length = 730
Score = 26.9 bits (58), Expect = 0.33
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 33 LLPESFDSFSHVYKGKRLQKRLVLRCFHHYYSNDSLIFHSQSLFLVSFFP 82
+LP + + Y G +++ + + H +Y N++ + + LFL FFP
Sbjct: 575 VLPSIYAANEERYNGYTIRE--LCQELHDFYKNNNTFTYQKRLFLREFFP 622
>pdb|1C4K|A Chain A, Ornithine Decarboxylase Mutant (Gly121tyr)
Length = 730
Score = 26.9 bits (58), Expect = 0.33
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 33 LLPESFDSFSHVYKGKRLQKRLVLRCFHHYYSNDSLIFHSQSLFLVSFFP 82
+LP + + Y G +++ + + H +Y N++ + + LFL FFP
Sbjct: 575 VLPSIYAANEERYNGYTIRE--LCQELHDFYKNNNTFTYQKRLFLREFFP 622
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 24.3 bits (51), Expect = 2.2
Identities = 11/19 (57%), Positives = 14/19 (72%)
Query: 25 RLCLENLSLLPESFDSFSH 43
+L LENL +LPES D S+
Sbjct: 205 QLTLENLQMLPESEDEESY 223
>pdb|1G8Y|A Chain A, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|B Chain B, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|C Chain C, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|D Chain D, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|E Chain E, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|F Chain F, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|G Chain G, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|H Chain H, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|I Chain I, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|J Chain J, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|K Chain K, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|L Chain L, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
Length = 279
Score = 24.3 bits (51), Expect = 2.2
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 33 LLPESFDSFSHVYKGKRLQKRLVLRCFHHYYSNDS 67
+ PE FD +G+RL LR FH N S
Sbjct: 119 MAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENAS 153
>pdb|1JEQ|A Chain A, Crystal Structure Of The Ku Heterodimer
pdb|1JEY|A Chain A, Crystal Structure Of The Ku Heterodimer Bound To Dna
Length = 609
Score = 23.1 bits (48), Expect = 4.8
Identities = 14/39 (35%), Positives = 17/39 (42%), Gaps = 7/39 (17%)
Query: 52 KRLVLRCFHHY-------YSNDSLIFHSQSLFLVSFFPC 83
K LVL HHY Y +SL+ S +LF C
Sbjct: 351 KPLVLLKKHHYLRPSLFVYPEESLVIGSSTLFSALLIKC 389
>pdb|1MGP|A Chain A, Hypothetical Protein Tm841 From Thermotoga Maritima
Reveals Fatty Acid Binding Function
Length = 313
Score = 22.7 bits (47), Expect = 6.3
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 16 GFCGKILPCRLCL--ENLSLLP 35
GF G +L R+CL EN L+P
Sbjct: 206 GFVGNLLKIRVCLHIENGELIP 227
>pdb|1LRZ|A Chain A, X-Ray Crystal Structure Of Staphylococcus Aureus Fema
Length = 426
Score = 22.3 bits (46), Expect = 8.2
Identities = 9/27 (33%), Positives = 16/27 (58%)
Query: 55 VLRCFHHYYSNDSLIFHSQSLFLVSFF 81
V++ F ++YSN + ++ LV FF
Sbjct: 63 VMKVFKYFYSNRGPVIDYENQELVHFF 89
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.340 0.150 0.512
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 528,595
Number of Sequences: 13198
Number of extensions: 15997
Number of successful extensions: 56
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 8
length of query: 107
length of database: 2,899,336
effective HSP length: 83
effective length of query: 24
effective length of database: 1,803,902
effective search space: 43293648
effective search space used: 43293648
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 46 (22.3 bits)