BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645601|ref|NP_207777.1| hypothetical protein
[Helicobacter pylori 26695]
(237 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|176L|A Chain A, Lysozyme (E.C.3.2.1.17) Mutant With Leu... 28 1.2
pdb|1JXA|A Chain A, Glucosamine 6-Phosphate Synthase With G... 27 1.6
pdb|1MOS|A Chain A, Isomerase Domain Of Glucosamine 6-Phosp... 27 1.6
pdb|1AGX| Glutaminase-Asparaginase (E.C.3.5.1.1) 26 4.6
pdb|209L| Protein Structure Plasticity Exemplified By Ins... 26 4.6
pdb|1L3R|E Chain E, Crystal Structure Of A Transition State... 25 6.1
pdb|1FMO|E Chain E, Crystal Structure Of A Polyhistidine-Ta... 25 6.1
pdb|1APM|E Chain E, c-AMP-Dependent Protein Kinase (E.C.2.7... 25 6.1
pdb|1BX6| Crystal Structure Of The Potent Natural Product... 25 6.1
pdb|1YDR|E Chain E, Structure Of Camp-Dependent Protein Kin... 25 6.1
pdb|1ATP|E Chain E, c-AMP-Dependent Protein Kinase (E.C.2.7... 25 6.1
pdb|1JBP|E Chain E, Crystal Structure Of The Catalytic Subu... 25 6.1
pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Ca... 25 6.1
pdb|1CTP|E Chain E, Camp-Dependent Protein Kinase (E.C.2.7.... 25 7.9
pdb|1CMK|E Chain E, Camp-Dependent Protein Kinase Catalytic... 25 7.9
>pdb|176L|A Chain A, Lysozyme (E.C.3.2.1.17) Mutant With Leu 32 Replaced By
Thr, Thr 34 Replaced By Lys, Lys 35 Replaced By Val, Ser
36 Replaced By Asp, Pro 37 Replaced By Gly, Ser 38
Replaced By Asn, Leu 39 Replaced By Ser, Cys 54 Replaced
By Thr, And Cys 97 Replaced By Ala
(L32t,T34k,K35v,S36d,P37g,S38n, L39s,C54t,C97a)
pdb|176L|B Chain B, Lysozyme (E.C.3.2.1.17) Mutant With Leu 32 Replaced By
Thr, Thr 34 Replaced By Lys, Lys 35 Replaced By Val, Ser
36 Replaced By Asp, Pro 37 Replaced By Gly, Ser 38
Replaced By Asn, Leu 39 Replaced By Ser, Cys 54 Replaced
By Thr, And Cys 97 Replaced By Ala
(L32t,T34k,K35v,S36d,P37g,S38n, L39s,C54t,C97a)
Length = 164
Score = 27.7 bits (60), Expect = 1.2
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 11/104 (10%)
Query: 133 LGVGNTNATQGDKHPIYTELDIAFSDGKNLYVAECKSGELKNKGVLAALSADAQIFGGAN 192
+G+G+T G+ + +ELD A N + + ++ +L N+ V AA+ I A
Sbjct: 27 IGIGHTLKVDGNSNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRG---ILRNAK 83
Query: 193 AKCILISIDGNLGQVLQEKVKILNIEFIFKYFKKNIENYINNSR 236
K + S+D L I +F+ + + + N+ R
Sbjct: 84 LKPVYDSLDAVRRAAL--------INMVFQMGETGVAGFTNSLR 119
>pdb|1JXA|A Chain A, Glucosamine 6-Phosphate Synthase With Glucose 6-Phosphate
pdb|1JXA|B Chain B, Glucosamine 6-Phosphate Synthase With Glucose 6-Phosphate
pdb|1JXA|C Chain C, Glucosamine 6-Phosphate Synthase With Glucose 6-Phosphate
Length = 608
Score = 27.3 bits (59), Expect = 1.6
Identities = 18/66 (27%), Positives = 33/66 (49%), Gaps = 1/66 (1%)
Query: 142 QGDKHPIYTELDIAFSDGKNLYVAECKSGELKNKGVLAALSADAQIFGGANAKCILISID 201
+GD++PI E + + ++ +GELK+ G LA + AD + A +L +
Sbjct: 472 RGDQYPIALEGALKLKEISYIHAEAYAAGELKH-GPLALIDADMPVIVVAPNNELLEKLK 530
Query: 202 GNLGQV 207
N+ +V
Sbjct: 531 SNIEEV 536
>pdb|1MOS|A Chain A, Isomerase Domain Of Glucosamine 6-Phosphate Synthase
Complexed With 2-Amino-2-Deoxyglucitol 6-Phosphate
pdb|1MOQ| Isomerase Domain Of Glucosamine 6-Phosphate Synthase Complexed
With Glucosamine 6-Phosphate
pdb|1MOR| Isomerase Domain Of Glucosamine 6-Phosphate Synthase Complexed
With Glucose 6-Phosphate
Length = 368
Score = 27.3 bits (59), Expect = 1.6
Identities = 18/66 (27%), Positives = 33/66 (49%), Gaps = 1/66 (1%)
Query: 142 QGDKHPIYTELDIAFSDGKNLYVAECKSGELKNKGVLAALSADAQIFGGANAKCILISID 201
+GD++PI E + + ++ +GELK+ G LA + AD + A +L +
Sbjct: 232 RGDQYPIALEGALKLKEISYIHAEAYAAGELKH-GPLALIDADMPVIVVAPNNELLEKLK 290
Query: 202 GNLGQV 207
N+ +V
Sbjct: 291 SNIEEV 296
>pdb|1AGX| Glutaminase-Asparaginase (E.C.3.5.1.1)
Length = 331
Score = 25.8 bits (55), Expect = 4.6
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 16/82 (19%)
Query: 161 NLY--VAECKSGELKNKGVLAALS----ADAQIFGGANAKC-ILISIDGNLGQVLQEKVK 213
NLY VA S E KNKGV+ ++ A + G N +S G LG +++ K
Sbjct: 131 NLYSAVALASSNEAKNKGVMVLMNDSIFAARDVTKGINIHTHAFVSQWGALGTLVEGKP- 189
Query: 214 ILNIEFIFKYFKKNIENYINNS 235
+F+ +++ + NNS
Sbjct: 190 --------YWFRSSVKKHTNNS 203
>pdb|209L| Protein Structure Plasticity Exemplified By Insertion And Deletion
Mutants In T4 Lysozyme
Length = 167
Score = 25.8 bits (55), Expect = 4.6
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 8/104 (7%)
Query: 133 LGVGNTNATQGDKHPIYTELDIAFSDGKNLYVAECKSGELKNKGVLAALSADAQIFGGAN 192
+G+G+ + +ELD A N + + ++ +L N+ V AA +A I A
Sbjct: 27 IGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAAAAVRGILRNAK 86
Query: 193 AKCILISIDGNLGQVLQEKVKILNIEFIFKYFKKNIENYINNSR 236
K + S+D L I +F+ + + + N+ R
Sbjct: 87 LKPVYDSLDAVRRAAL--------INMVFQMGETGVAGFTNSLR 122
>pdb|1L3R|E Chain E, Crystal Structure Of A Transition State Mimic Of The
Catalytic Subunit Of Camp-Dependent Protein Kinase
Length = 350
Score = 25.4 bits (54), Expect = 6.1
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 116 LELLDKQVICDLRLNMILGVGNTNATQGDKHPIYTELDIAFSDGKNLYV 164
+++LDKQ + L+ + + Q P +L+ +F D NLY+
Sbjct: 71 MKILDKQKVVKLK-QIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYM 118
>pdb|1FMO|E Chain E, Crystal Structure Of A Polyhistidine-Tagged Recombinant
Catalytic Subunit Of Camp-Dependent Protein Kinase
Complexed With The Peptide Inhibitor Pki(5-24) And
Adenosine
pdb|1JLU|E Chain E, Crystal Structure Of The Catalytic Subunit Of Camp-
Dependent Protein Kinase Complexed With A Phosphorylated
Substrate Peptide And Detergent
Length = 350
Score = 25.4 bits (54), Expect = 6.1
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 116 LELLDKQVICDLRLNMILGVGNTNATQGDKHPIYTELDIAFSDGKNLYV 164
+++LDKQ + L+ + + Q P +L+ +F D NLY+
Sbjct: 71 MKILDKQKVVKLK-QIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYM 118
>pdb|1APM|E Chain E, c-AMP-Dependent Protein Kinase (E.C.2.7.1.37) (cAPK)
(Catalytic Subunit) "alpha" Isoenzyme Mutant With Ser
139 Replaced By Ala (S139A) Complex With The Peptide
Inhibitor Pki(5-24) And The Detergent Mega-8
Length = 350
Score = 25.4 bits (54), Expect = 6.1
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 116 LELLDKQVICDLRLNMILGVGNTNATQGDKHPIYTELDIAFSDGKNLYV 164
+++LDKQ + L+ + + Q P +L+ +F D NLY+
Sbjct: 71 MKILDKQKVVKLK-QIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYM 118
>pdb|1BX6| Crystal Structure Of The Potent Natural Product Inhibitor Balanol
In Complex With The Catalytic Subunit Of Camp-Dependent
Protein Kinase
pdb|1BKX|A Chain A, A Binary Complex Of The Catalytic Subunit Of
Camp-Dependent Protein Kinase And Adenosine Further
Defines Conformational Flexibility
Length = 350
Score = 25.4 bits (54), Expect = 6.1
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 116 LELLDKQVICDLRLNMILGVGNTNATQGDKHPIYTELDIAFSDGKNLYV 164
+++LDKQ + L+ + + Q P +L+ +F D NLY+
Sbjct: 71 MKILDKQKVVKLK-QIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYM 118
>pdb|1YDR|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H7 Protein
Kinase Inhibitor
1-(5-Isoquinolinesulfonyl)-2-Methylpiperazine
pdb|1YDS|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H8 Protein
Kinase Inhibitor
[n-(2-Methylamino)ethyl]-5-Isoquinolinesulfonamide
pdb|1YDT|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H89 Protein
Kinase Inhibitor
N-[2-(4-Bromocinnamylamino)ethyl]-5-Isoquinoline
Length = 350
Score = 25.4 bits (54), Expect = 6.1
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 116 LELLDKQVICDLRLNMILGVGNTNATQGDKHPIYTELDIAFSDGKNLYV 164
+++LDKQ + L+ + + Q P +L+ +F D NLY+
Sbjct: 71 MKILDKQKVVKLK-QIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYM 118
>pdb|1ATP|E Chain E, c-AMP-Dependent Protein Kinase (E.C.2.7.1.37) (cAPK)
(Catalytic Subunit) Complex With The Peptide Inhibitor
Pki(5-24) And Mnatp (A Ternary Complex Of Capk)
pdb|2CPK|E Chain E, c-AMP-Dependent Protein Kinase (E.C.2.7.1.37) (cAPK)
(Catalytic Subunit)
Length = 350
Score = 25.4 bits (54), Expect = 6.1
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 116 LELLDKQVICDLRLNMILGVGNTNATQGDKHPIYTELDIAFSDGKNLYV 164
+++LDKQ + L+ + + Q P +L+ +F D NLY+
Sbjct: 71 MKILDKQKVVKLK-QIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYM 118
>pdb|1JBP|E Chain E, Crystal Structure Of The Catalytic Subunit Of Camp-
Dependent Protein Kinase Complexed With A Substrate
Peptide, Adp And Detergent
Length = 350
Score = 25.4 bits (54), Expect = 6.1
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 116 LELLDKQVICDLRLNMILGVGNTNATQGDKHPIYTELDIAFSDGKNLYV 164
+++LDKQ + L+ + + Q P +L+ +F D NLY+
Sbjct: 71 MKILDKQKVVKLK-QIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYM 118
>pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In
Complex With Staurosporine
Length = 350
Score = 25.4 bits (54), Expect = 6.1
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 116 LELLDKQVICDLRLNMILGVGNTNATQGDKHPIYTELDIAFSDGKNLYV 164
+++LDKQ + L+ + + Q P +L+ +F D NLY+
Sbjct: 71 MKILDKQKVVKLK-QIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYM 118
>pdb|1CTP|E Chain E, Camp-Dependent Protein Kinase (E.C.2.7.1.37) (Capk)
(Catalytic Subunit)
Length = 350
Score = 25.0 bits (53), Expect = 7.9
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 116 LELLDKQVICDLRLNMILGVGNTNATQGDKHPIYTELDIAFSDGKNLYV 164
+++LDKQ + L+ + + Q P +L+ +F D NLY+
Sbjct: 71 MKILDKQKVVKLK-QIEHTLNEKRILQAVNFPFLVKLEYSFKDNSNLYM 118
>pdb|1CMK|E Chain E, Camp-Dependent Protein Kinase Catalytic Subunit
(E.C.2.7.1.37)
pdb|1CDK|B Chain B, Camp-Dependent Protein Kinase Catalytic Subunit
(E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein
Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24)
Isoelectric Variant Ca) And Mn2+ Adenylyl
Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c
pdb|1CDK|A Chain A, Camp-Dependent Protein Kinase Catalytic Subunit
(E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein
Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24)
Isoelectric Variant Ca) And Mn2+ Adenylyl
Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c
Length = 350
Score = 25.0 bits (53), Expect = 7.9
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 116 LELLDKQVICDLRLNMILGVGNTNATQGDKHPIYTELDIAFSDGKNLYV 164
+++LDKQ + L+ + + Q P +L+ +F D NLY+
Sbjct: 71 MKILDKQKVVKLK-QIEHTLNEKRILQAVNFPFLVKLEYSFKDNSNLYM 118
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.140 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,361,686
Number of Sequences: 13198
Number of extensions: 58095
Number of successful extensions: 118
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 116
Number of HSP's gapped (non-prelim): 15
length of query: 237
length of database: 2,899,336
effective HSP length: 85
effective length of query: 152
effective length of database: 1,777,506
effective search space: 270180912
effective search space used: 270180912
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)