BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645602|ref|NP_207778.1| hypothetical protein
[Helicobacter pylori 26695]
(77 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|2ECP|A Chain A, The Crystal Structure Of The E. Coli Ma... 23 5.9
pdb|1QM5|A Chain A, Phosphorylase Recognition And Phosphory... 23 5.9
pdb|1L5W|A Chain A, Crystal Structure Of The Maltodextrin P... 23 5.9
pdb|1AHP|A Chain A, Oligosaccharide Substrate Binding In Es... 23 5.9
>pdb|2ECP|A Chain A, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
pdb|2ECP|B Chain B, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
Length = 796
Score = 23.1 bits (48), Expect = 5.9
Identities = 8/18 (44%), Positives = 13/18 (71%)
Query: 21 LDDILKHMQKPRFSDSDK 38
LD +LK ++ ++SD DK
Sbjct: 703 LDAVLKELESGKYSDGDK 720
>pdb|1QM5|A Chain A, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1QM5|B Chain B, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|A Chain A, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|B Chain B, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
Length = 796
Score = 23.1 bits (48), Expect = 5.9
Identities = 8/18 (44%), Positives = 13/18 (71%)
Query: 21 LDDILKHMQKPRFSDSDK 38
LD +LK ++ ++SD DK
Sbjct: 703 LDAVLKELESGKYSDGDK 720
>pdb|1L5W|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L5W|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L5V|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5V|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L6I|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|1L6I|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
Length = 796
Score = 23.1 bits (48), Expect = 5.9
Identities = 8/18 (44%), Positives = 13/18 (71%)
Query: 21 LDDILKHMQKPRFSDSDK 38
LD +LK ++ ++SD DK
Sbjct: 703 LDAVLKELESGKYSDGDK 720
>pdb|1AHP|A Chain A, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
pdb|1AHP|B Chain B, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
Length = 797
Score = 23.1 bits (48), Expect = 5.9
Identities = 8/18 (44%), Positives = 13/18 (71%)
Query: 21 LDDILKHMQKPRFSDSDK 38
LD +LK ++ ++SD DK
Sbjct: 704 LDAVLKELESGKYSDGDK 721
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.323 0.141 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 399,369
Number of Sequences: 13198
Number of extensions: 12912
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 4
length of query: 77
length of database: 2,899,336
effective HSP length: 53
effective length of query: 24
effective length of database: 2,199,842
effective search space: 52796208
effective search space used: 52796208
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)