BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645606|ref|NP_207782.1| hypothetical protein
[Helicobacter pylori 26695]
(209 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1E0Y|A Chain A, Structure Of The D170sT457E DOUBLE MUTA... 32 0.054
pdb|1E8G|A Chain A, Structure Of The H61t Double Mutant Of ... 32 0.054
pdb|1DZN|B Chain B, Asp170ser Mutant Of Vanillyl-Alcohol Ox... 32 0.054
pdb|1QLT|A Chain A, Structure Of The H422a Mutant Of The Fl... 32 0.054
pdb|1AHU|A Chain A, Structure Of The Octameric Flavoenzyme ... 29 0.45
pdb|1LA3|A Chain A, Solution Structure Of Recoverin Mutant,... 27 1.7
pdb|1AQD|A Chain A, Hla-Dr1 (Dra, Drb1 0101) Human Class Ii... 26 2.9
pdb|1JSA| Myristoylated Recoverin With Two Calciums Bound... 26 3.8
pdb|1IEA|A Chain A, Histocompatibility Antigen >gi|2392364|... 26 3.8
pdb|1REC| Recoverin (Calcium Sensor In Vision) 26 3.8
pdb|1I3R|A Chain A, Crystal Structure Of A Mutant Iek Class... 26 3.8
pdb|1FNE|A Chain A, Histocompatibility Antigen >gi|13399456... 26 3.8
pdb|1SEB|D Chain D, Complex Of The Human Mhc Class Ii Glyco... 25 5.0
pdb|1ELJ|A Chain A, The Crystal Structure Of Liganded Malto... 25 6.6
pdb|1EJ7|L Chain L, Crystal Structure Of Unactivated Tobacc... 25 6.6
pdb|1DXS|A Chain A, Crystal Structure Of The C-Terminal Ste... 25 6.6
pdb|1CT9|A Chain A, Crystal Structure Of Asparagine Synthet... 25 8.6
>pdb|1E0Y|A Chain A, Structure Of The D170sT457E DOUBLE MUTANT OF
Vanillyl-Alcohol Oxidase
pdb|1E0Y|B Chain B, Structure Of The D170sT457E DOUBLE MUTANT OF
Vanillyl-Alcohol Oxidase
Length = 560
Score = 32.0 bits (71), Expect = 0.054
Identities = 27/104 (25%), Positives = 40/104 (37%), Gaps = 14/104 (13%)
Query: 94 MANMGGENDYKITWLKPKYQLHSSNNIKPLMSNTELLNMIELTNIKKEY-VMGCNMEIDG 152
M N GG Y IT K + + I+PL L N+ + +I + V+G
Sbjct: 270 MPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSS 329
Query: 153 SKYPIHKD-------------WGFFGKAKVPETWRNKIWECIKN 183
P+ + W F+G PE R +WE IK+
Sbjct: 330 RTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKD 373
>pdb|1E8G|A Chain A, Structure Of The H61t Double Mutant Of Vanillyl-Alcohol
Oxidase In Complex With Fluoro-Cresol
pdb|1E8G|B Chain B, Structure Of The H61t Double Mutant Of Vanillyl-Alcohol
Oxidase In Complex With Fluoro-Cresol
pdb|1E8H|A Chain A, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form Complexed By
Adp
pdb|1E8H|B Chain B, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form Complexed By
Adp
pdb|1E8F|A Chain A, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form
pdb|1E8F|B Chain B, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form
Length = 560
Score = 32.0 bits (71), Expect = 0.054
Identities = 27/104 (25%), Positives = 40/104 (37%), Gaps = 14/104 (13%)
Query: 94 MANMGGENDYKITWLKPKYQLHSSNNIKPLMSNTELLNMIELTNIKKEY-VMGCNMEIDG 152
M N GG Y IT K + + I+PL L N+ + +I + V+G
Sbjct: 270 MPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSS 329
Query: 153 SKYPIHKD-------------WGFFGKAKVPETWRNKIWECIKN 183
P+ + W F+G PE R +WE IK+
Sbjct: 330 RTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKD 373
>pdb|1DZN|B Chain B, Asp170ser Mutant Of Vanillyl-Alcohol Oxidase
pdb|1DZN|A Chain A, Asp170ser Mutant Of Vanillyl-Alcohol Oxidase
Length = 560
Score = 32.0 bits (71), Expect = 0.054
Identities = 27/104 (25%), Positives = 40/104 (37%), Gaps = 14/104 (13%)
Query: 94 MANMGGENDYKITWLKPKYQLHSSNNIKPLMSNTELLNMIELTNIKKEY-VMGCNMEIDG 152
M N GG Y IT K + + I+PL L N+ + +I + V+G
Sbjct: 270 MPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSS 329
Query: 153 SKYPIHKD-------------WGFFGKAKVPETWRNKIWECIKN 183
P+ + W F+G PE R +WE IK+
Sbjct: 330 RTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKD 373
>pdb|1QLT|A Chain A, Structure Of The H422a Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase
pdb|1QLT|B Chain B, Structure Of The H422a Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase
pdb|1QLU|A Chain A, Structure Of The H422a Mutant Vanillyl-Alcohol Oxidase In
Complex With Isoeugenol
pdb|1QLU|B Chain B, Structure Of The H422a Mutant Vanillyl-Alcohol Oxidase In
Complex With Isoeugenol
Length = 560
Score = 32.0 bits (71), Expect = 0.054
Identities = 27/104 (25%), Positives = 40/104 (37%), Gaps = 14/104 (13%)
Query: 94 MANMGGENDYKITWLKPKYQLHSSNNIKPLMSNTELLNMIELTNIKKEY-VMGCNMEIDG 152
M N GG Y IT K + + I+PL L N+ + +I + V+G
Sbjct: 270 MPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSS 329
Query: 153 SKYPIHKD-------------WGFFGKAKVPETWRNKIWECIKN 183
P+ + W F+G PE R +WE IK+
Sbjct: 330 RTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKD 373
>pdb|1AHU|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With P-Cresol
pdb|1AHU|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With P-Cresol
pdb|2VAO|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With Isoeugenol
pdb|2VAO|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With Isoeugenol
pdb|1AHV|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 2-Nitro-P-Cresol
pdb|1AHV|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 2-Nitro-P-Cresol
pdb|1AHZ|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 4-(1-Heptenyl)phenol
pdb|1AHZ|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 4-(1-Heptenyl)phenol
pdb|1VAO|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase
pdb|1VAO|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase
Length = 560
Score = 28.9 bits (63), Expect = 0.45
Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 14/104 (13%)
Query: 94 MANMGGENDYKITWLKPKYQLHSSNNIKPLMSNTELLNMIELTNIKKEY-VMGCNMEIDG 152
M N G Y IT K + + I+PL L N+ + +I + V+G
Sbjct: 270 MPNPRGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSS 329
Query: 153 SKYPIHKD-------------WGFFGKAKVPETWRNKIWECIKN 183
P+ + W F+G PE R +WE IK+
Sbjct: 330 RTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKD 373
>pdb|1LA3|A Chain A, Solution Structure Of Recoverin Mutant, E85q
Length = 202
Score = 26.9 bits (58), Expect = 1.7
Identities = 36/170 (21%), Positives = 67/170 (39%), Gaps = 30/170 (17%)
Query: 9 SKEFPNKKQLQTMLENAFDNGAESFIDDWHERF------GGISRENTYKALGIKEYSDEG 62
SKE + QL T E + W++ F G I+R+ ++ + K + +
Sbjct: 10 SKEILEELQLNTKF-------TEEELSSWYQSFLKECPSGRITRQE-FQTIYSKFFPEAD 61
Query: 63 KILAFGERSYIRQYKKDFE---ESTYDTRQTLSAM-ANMGGENDYKITWLKPKYQLHSSN 118
++Y + + F+ + T D +Q + A+ G+ + K+ W Y + +
Sbjct: 62 P------KAYAQHVFRSFDANSDGTLDFKQYVIALHMTSAGKTNQKLEWAFSLYDVDGNG 115
Query: 119 NIKPLMSNTELLNMIE--LTNIKKEYVMGCNMEIDGSKYPIHKDWGFFGK 166
I S E+L ++ I E + + + K WGFFGK
Sbjct: 116 TI----SKNEVLEIVTAIFKMISPEDTKHLPEDENTPEKRAEKIWGFFGK 161
>pdb|1AQD|A Chain A, Hla-Dr1 (Dra, Drb1 0101) Human Class Ii Histocompatibility
Protein (Extracellular Domain) Complexed With Endogenous
Peptide
pdb|1AQD|D Chain D, Hla-Dr1 (Dra, Drb1 0101) Human Class Ii Histocompatibility
Protein (Extracellular Domain) Complexed With Endogenous
Peptide
pdb|1AQD|G Chain G, Hla-Dr1 (Dra, Drb1 0101) Human Class Ii Histocompatibility
Protein (Extracellular Domain) Complexed With Endogenous
Peptide
pdb|1AQD|J Chain J, Hla-Dr1 (Dra, Drb1 0101) Human Class Ii Histocompatibility
Protein (Extracellular Domain) Complexed With Endogenous
Peptide
Length = 192
Score = 26.2 bits (56), Expect = 2.9
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 141 EYVMGCNMEIDGSKYPIHKDWGFFGKAKVPETWRN 175
E V C +E G P+ K W F + +PET N
Sbjct: 158 EDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTEN 192
>pdb|1JSA| Myristoylated Recoverin With Two Calciums Bound, Nmr, 24
Structures
pdb|1IKU| Myristoylated Recoverin In The Calcium-Free State, Nmr, 22
Structures
Length = 202
Score = 25.8 bits (55), Expect = 3.8
Identities = 35/170 (20%), Positives = 67/170 (38%), Gaps = 30/170 (17%)
Query: 9 SKEFPNKKQLQTMLENAFDNGAESFIDDWHERF------GGISRENTYKALGIKEYSDEG 62
SKE + QL T E + W++ F G I+R+ ++ + K + +
Sbjct: 10 SKEILEELQLNTKF-------TEEELSSWYQSFLKECPSGRITRQE-FQTIYSKFFPEAD 61
Query: 63 KILAFGERSYIRQYKKDFE---ESTYDTRQTLSAM-ANMGGENDYKITWLKPKYQLHSSN 118
++Y + + F+ + T D ++ + A+ G+ + K+ W Y + +
Sbjct: 62 P------KAYAQHVFRSFDANSDGTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNG 115
Query: 119 NIKPLMSNTELLNMIE--LTNIKKEYVMGCNMEIDGSKYPIHKDWGFFGK 166
I S E+L ++ I E + + + K WGFFGK
Sbjct: 116 TI----SKNEVLEIVTAIFKMISPEDTKHLPEDENTPEKRAEKIWGFFGK 161
>pdb|1IEA|A Chain A, Histocompatibility Antigen
pdb|1IEA|C Chain C, Histocompatibility Antigen
pdb|1IEB|A Chain A, Histocompatibility Antigen
pdb|1IEB|C Chain C, Histocompatibility Antigen
Length = 192
Score = 25.8 bits (55), Expect = 3.8
Identities = 11/30 (36%), Positives = 16/30 (52%)
Query: 146 CNMEIDGSKYPIHKDWGFFGKAKVPETWRN 175
C ++ G + P+ K W F K +PET N
Sbjct: 163 CEVDHWGLEEPLRKTWEFEEKTLLPETKEN 192
>pdb|1REC| Recoverin (Calcium Sensor In Vision)
Length = 201
Score = 25.8 bits (55), Expect = 3.8
Identities = 35/170 (20%), Positives = 67/170 (38%), Gaps = 30/170 (17%)
Query: 9 SKEFPNKKQLQTMLENAFDNGAESFIDDWHERF------GGISRENTYKALGIKEYSDEG 62
SKE + QL T E + W++ F G I+R+ ++ + K + +
Sbjct: 9 SKEILEELQLNTKF-------TEEELSSWYQSFLKECPSGRITRQE-FQTIYSKFFPEAD 60
Query: 63 KILAFGERSYIRQYKKDFE---ESTYDTRQTLSAM-ANMGGENDYKITWLKPKYQLHSSN 118
++Y + + F+ + T D ++ + A+ G+ + K+ W Y + +
Sbjct: 61 P------KAYAQHVFRSFDANSDGTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNG 114
Query: 119 NIKPLMSNTELLNMIE--LTNIKKEYVMGCNMEIDGSKYPIHKDWGFFGK 166
I S E+L ++ I E + + + K WGFFGK
Sbjct: 115 TI----SKNEVLEIVTAIFKMISPEDTKHLPEDENTPEKRAEKIWGFFGK 160
>pdb|1I3R|A Chain A, Crystal Structure Of A Mutant Iek Class Ii Mhc Molecule
pdb|1I3R|C Chain C, Crystal Structure Of A Mutant Iek Class Ii Mhc Molecule
pdb|1I3R|E Chain E, Crystal Structure Of A Mutant Iek Class Ii Mhc Molecule
pdb|1I3R|G Chain G, Crystal Structure Of A Mutant Iek Class Ii Mhc Molecule
Length = 192
Score = 25.8 bits (55), Expect = 3.8
Identities = 11/30 (36%), Positives = 16/30 (52%)
Query: 146 CNMEIDGSKYPIHKDWGFFGKAKVPETWRN 175
C ++ G + P+ K W F K +PET N
Sbjct: 163 CEVDHWGLEEPLRKHWEFEEKTLLPETKEN 192
>pdb|1FNE|A Chain A, Histocompatibility Antigen
pdb|1FNE|C Chain C, Histocompatibility Antigen
pdb|1FNG|A Chain A, Histocompatibility Antigen
pdb|1FNG|C Chain C, Histocompatibility Antigen
Length = 192
Score = 25.8 bits (55), Expect = 3.8
Identities = 11/30 (36%), Positives = 16/30 (52%)
Query: 146 CNMEIDGSKYPIHKDWGFFGKAKVPETWRN 175
C ++ G + P+ K W F K +PET N
Sbjct: 163 CEVDHWGLEEPLRKHWEFEEKTLLPETKEN 192
>pdb|1SEB|D Chain D, Complex Of The Human Mhc Class Ii Glycoprotein Hla-Dr1 And
The Bacterial Superantigen Seb
pdb|1SEB|H Chain H, Complex Of The Human Mhc Class Ii Glycoprotein Hla-Dr1 And
The Bacterial Superantigen Seb
Length = 206
Score = 25.4 bits (54), Expect = 5.0
Identities = 12/51 (23%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 41 FGGISRENTYKALGIKEYSDEGKILAFGERSYIRQYKKDFEESTYDTRQTL 91
+GG++ + Y+++ ++ + D +L+F ++ + K +E Y TR L
Sbjct: 98 YGGVTEHDKYRSITVRVFEDGKNLLSFDVQT--NKKKVTAQELDYLTRHYL 146
>pdb|1ELJ|A Chain A, The Crystal Structure Of Liganded Maltodextrin-Binding
Protein From Pyrococcus Furiosus
Length = 381
Score = 25.0 bits (53), Expect = 6.6
Identities = 11/22 (50%), Positives = 11/22 (50%)
Query: 186 KSYDNTTTKIGIVWKKNTYSIS 207
K YD K GI W N Y IS
Sbjct: 143 KYYDPANEKYGIAWPINAYFIS 164
>pdb|1EJ7|L Chain L, Crystal Structure Of Unactivated Tobacco Rubisco With
Bound Phosphate Ions
Length = 475
Score = 25.0 bits (53), Expect = 6.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 89 QTLSAMANMGGENDYKITWLKPKYQ 113
+T +++ G DYK+T+ P+YQ
Sbjct: 4 ETKASVGFKAGVKDYKLTYYTPEYQ 28
>pdb|1DXS|A Chain A, Crystal Structure Of The C-Terminal Sterile Alpha Motif
(Sam) Domain Of Human P73 Alpha Splice Variant
Length = 80
Score = 25.0 bits (53), Expect = 6.6
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 165 GKAKVPETWRNKIWECIKNKVKSYDNTTTK 194
G K+PE +R IW +++ + +D +T +
Sbjct: 45 GALKIPEQYRMTIWRGLQDLKQGHDYSTAQ 74
>pdb|1CT9|A Chain A, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
pdb|1CT9|B Chain B, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
pdb|1CT9|C Chain C, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
pdb|1CT9|D Chain D, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
Length = 553
Score = 24.6 bits (52), Expect = 8.6
Identities = 10/41 (24%), Positives = 23/41 (55%)
Query: 158 HKDWGFFGKAKVPETWRNKIWECIKNKVKSYDNTTTKIGIV 198
H+DW + K T +N++ + +++ VKS+ + G++
Sbjct: 192 HRDWFDYDAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVL 232
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.315 0.132 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,357,881
Number of Sequences: 13198
Number of extensions: 57425
Number of successful extensions: 102
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 89
Number of HSP's gapped (non-prelim): 17
length of query: 209
length of database: 2,899,336
effective HSP length: 84
effective length of query: 125
effective length of database: 1,790,704
effective search space: 223838000
effective search space used: 223838000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)