BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644730|ref|NP_206900.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(368 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1M6U|A Chain A, Crystal Structure Of A Novel Dna-Bindin... 31 0.25
pdb|5EAU| 5-Epi-Aristolochene Synthase From Nicotiana Tab... 27 2.8
pdb|5EAT| 5-Epi-Aristolochene Synthase From Nicotiana Tab... 27 2.8
pdb|5EAS| 5-Epi-Aristolochene Synthase From Nicotiana Tab... 27 2.8
>pdb|1M6U|A Chain A, Crystal Structure Of A Novel Dna-Binding Domain From
Ndt80, A Transcriptional Activator Required For Meiosis
In Yeast
pdb|1M6U|B Chain B, Crystal Structure Of A Novel Dna-Binding Domain From
Ndt80, A Transcriptional Activator Required For Meiosis
In Yeast
pdb|1M7U|A Chain A, Crystal Structure Of A Novel Dna-Binding Domain From
Ndt80, A Transcriptional Activator Required For Meiosis
In Yeast
pdb|1M7U|B Chain B, Crystal Structure Of A Novel Dna-Binding Domain From
Ndt80, A Transcriptional Activator Required For Meiosis
In Yeast
Length = 272
Score = 30.8 bits (68), Expect = 0.25
Identities = 21/67 (31%), Positives = 29/67 (42%)
Query: 301 NTLMAKNYDNLKELNLNPLNYEEELSLRALVSGSESINPIIVLEERTEKTLFVEIKSVFQ 360
N K YD+ L+ N +NYEE L S E + ER + + +K FQ
Sbjct: 151 NITKTKKYDSTFYLHRNHVNYEEYGVDSLLFSYPEDSIQKVARYERVQFASSISVKKPFQ 210
Query: 361 EEKVFYL 367
+ K F L
Sbjct: 211 QNKHFSL 217
>pdb|5EAU| 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 27.3 bits (59), Expect = 2.8
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 108 EKFTTTLLTSPKKDPNQLIAKGQSIAQRHNLEFVVFRNDNFEHFKSELDLNLQALAREN 166
EK+ + ++ N L+A G +A NL + R HF+ E+D L + +N
Sbjct: 40 EKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQN 98
>pdb|5EAT| 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate
Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 27.3 bits (59), Expect = 2.8
Identities = 15/59 (25%), Positives = 29/59 (48%)
Query: 108 EKFTTTLLTSPKKDPNQLIAKGQSIAQRHNLEFVVFRNDNFEHFKSELDLNLQALAREN 166
EK+ + ++ + L+A G+ +A NL ++ R HF+ E+D L + +N
Sbjct: 40 EKYAQEIEALKEQTRSMLLATGRKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQN 98
>pdb|5EAS| 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 27.3 bits (59), Expect = 2.8
Identities = 15/59 (25%), Positives = 29/59 (48%)
Query: 108 EKFTTTLLTSPKKDPNQLIAKGQSIAQRHNLEFVVFRNDNFEHFKSELDLNLQALAREN 166
EK+ + ++ + L+A G+ +A NL ++ R HF+ E+D L + +N
Sbjct: 40 EKYAQEIEALKEQTRSMLLATGRKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQN 98
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.137 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,935,180
Number of Sequences: 13198
Number of extensions: 76959
Number of successful extensions: 159
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 156
Number of HSP's gapped (non-prelim): 4
length of query: 368
length of database: 2,899,336
effective HSP length: 90
effective length of query: 278
effective length of database: 1,711,516
effective search space: 475801448
effective search space used: 475801448
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)