BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645607|ref|NP_207783.1| hypothetical protein
[Helicobacter pylori 26695]
(79 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1IAM| Structure Of The Two Amino-Terminal Domains Of ... 28 0.24
pdb|1D3L|A Chain A, D1d2-Icam-1 Fully Glycosylated, Variati... 28 0.24
pdb|1IC1|A Chain A, The Crystal Structure For The N-Termina... 28 0.24
pdb|1IC1|B Chain B, The Crystal Structure For The N-Termina... 28 0.24
pdb|1JI4|A Chain A, Nap Protein From Helicobacter Pylori >g... 25 1.2
pdb|1ZXQ| The Crystal Structure Of Icam-2 25 2.0
pdb|1II8|A Chain A, Crystal Structure Of The P. Furiosus Ra... 25 2.0
pdb|1F2U|A Chain A, Crystal Structure Of Rad50 Abc-Atpase >... 25 2.0
pdb|1QFX|B Chain B, Ph 2.5 Acid Phosphatase From Aspergillu... 24 3.4
pdb|1ECQ|A Chain A, E. Coli Glucarate Dehydratase Bound To ... 23 7.6
pdb|1HHS|A Chain A, Rna Dependent Rna Polymerase From Dsrna... 23 7.6
pdb|1HI8|A Chain A, Rna Dependent Rna Polymerase From Dsrna... 23 7.6
pdb|1JDF|C Chain C, Glucarate Dehydratase From E.Coli N341d... 23 7.6
pdb|1QUA|A Chain A, Crystal Structure Of Acutolysin-C, A He... 23 7.6
pdb|1JDF|A Chain A, Glucarate Dehydratase From E.Coli N341d... 23 7.6
pdb|1JCT|A Chain A, Glucarate Dehydratase, N341l Mutant Ort... 23 7.6
pdb|1A9X|B Chain B, Carbamoyl Phosphate Synthetase: Caught ... 22 9.9
pdb|1C30|B Chain B, Crystal Structure Of Carbamoyl Phosphat... 22 9.9
pdb|1CS0|B Chain B, Crystal Structure Of Carbamoyl Phosphat... 22 9.9
pdb|1KGD|A Chain A, Crystal Structure Of The Guanylate Kina... 22 9.9
pdb|1M6V|B Chain B, Crystal Structure Of The G359f (Small S... 22 9.9
pdb|1DQW|A Chain A, Crystal Structure Of Orotidine 5'-Phosp... 22 9.9
pdb|1JDB|F Chain F, Carbamoyl Phosphate Synthetase From Esc... 22 9.9
pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Y... 22 9.9
>pdb|1IAM| Structure Of The Two Amino-Terminal Domains Of Human
Intercellular Adhesion Molecule-1, Icam-1
Length = 185
Score = 27.7 bits (60), Expect = 0.24
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 10 TLKTSLLAEVLLGATAPLMAKPLLSDEDLLKRVKLHNIKEDTLTSCNAKVDGSQ 63
T TS LLG PL K LL + K +L N++ED+ C + Q
Sbjct: 20 TCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQ 73
>pdb|1D3L|A Chain A, D1d2-Icam-1 Fully Glycosylated, Variation Of D1-D2
Interdomain Angle In Different Crystal Structures.
pdb|1D3E|I Chain I, Cryo-Em Structure Of Human Rhinovirus 16 (Hrv16)
Complexed With A Two-Domain Fragment Of Its Cellular
Receptor, Intercellular Adhesion Molecule-1
(D1d2-Icam-1). Implications For Virus-Receptor
Interactions. Alpha Carbons Only
pdb|1D3I|I Chain I, Cryo-Em Structure Of Human Rhinovirus 14 (Hrv14)
Complexed With A Two-Domain Fragment Of Its Cellular
Receptor, Intercellular Adhesion Molecule-1
(D1d2-Icam-1). Implications For Virus-Receptor
Interactions. Alpha Carbons Only
Length = 185
Score = 27.7 bits (60), Expect = 0.24
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 10 TLKTSLLAEVLLGATAPLMAKPLLSDEDLLKRVKLHNIKEDTLTSCNAKVDGSQ 63
T TS LLG PL K LL + K +L N++ED+ C + Q
Sbjct: 20 TCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQ 73
>pdb|1IC1|A Chain A, The Crystal Structure For The N-Terminal Two Domains Of
Icam-1
Length = 190
Score = 27.7 bits (60), Expect = 0.24
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 10 TLKTSLLAEVLLGATAPLMAKPLLSDEDLLKRVKLHNIKEDTLTSCNAKVDGSQ 63
T TS LLG PL K LL + K +L N++ED+ C + Q
Sbjct: 20 TCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQ 73
>pdb|1IC1|B Chain B, The Crystal Structure For The N-Terminal Two Domains Of
Icam-1
Length = 190
Score = 27.7 bits (60), Expect = 0.24
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 10 TLKTSLLAEVLLGATAPLMAKPLLSDEDLLKRVKLHNIKEDTLTSCNAKVDGSQ 63
T TS LLG PL K LL + K +L N++ED+ C + Q
Sbjct: 20 TCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQ 73
>pdb|1JI4|A Chain A, Nap Protein From Helicobacter Pylori
pdb|1JI4|B Chain B, Nap Protein From Helicobacter Pylori
pdb|1JI4|C Chain C, Nap Protein From Helicobacter Pylori
pdb|1JI4|D Chain D, Nap Protein From Helicobacter Pylori
pdb|1JI4|E Chain E, Nap Protein From Helicobacter Pylori
pdb|1JI4|F Chain F, Nap Protein From Helicobacter Pylori
pdb|1JI4|G Chain G, Nap Protein From Helicobacter Pylori
pdb|1JI4|H Chain H, Nap Protein From Helicobacter Pylori
pdb|1JI4|I Chain I, Nap Protein From Helicobacter Pylori
pdb|1JI4|J Chain J, Nap Protein From Helicobacter Pylori
pdb|1JI4|K Chain K, Nap Protein From Helicobacter Pylori
pdb|1JI4|L Chain L, Nap Protein From Helicobacter Pylori
Length = 144
Score = 25.4 bits (54), Expect = 1.2
Identities = 14/41 (34%), Positives = 23/41 (55%)
Query: 38 LLKRVKLHNIKEDTLTSCNAKVDGSQYLNSGWNLSKEFPQV 78
L + +KL +KE+T TS ++K + L L KEF ++
Sbjct: 69 LSEAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKEL 109
>pdb|1ZXQ| The Crystal Structure Of Icam-2
Length = 192
Score = 24.6 bits (52), Expect = 2.0
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 21 LGATAPLMAKPLLSDEDLLKRVKLHNIKEDTLTSCNAKVDGSQ-YLNSGWNLSKEFPQVI 79
+G + K LL ++ K + NI DT+ C+ G Q +NS ++ + QVI
Sbjct: 33 VGGLETSLNKILLDEQAQWKHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVI 92
>pdb|1II8|A Chain A, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 195
Score = 24.6 bits (52), Expect = 2.0
Identities = 13/31 (41%), Positives = 18/31 (57%)
Query: 6 GLNKTLKTSLLAEVLLGATAPLMAKPLLSDE 36
G N + K+SLL +L+G PL K + DE
Sbjct: 30 GQNGSGKSSLLDAILVGLYWPLRIKDIKKDE 60
>pdb|1F2U|A Chain A, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|C Chain C, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2T|A Chain A, Crystal Structure Of Atp-Free Rad50 Abc-Atpase
Length = 149
Score = 24.6 bits (52), Expect = 2.0
Identities = 13/31 (41%), Positives = 18/31 (57%)
Query: 6 GLNKTLKTSLLAEVLLGATAPLMAKPLLSDE 36
G N + K+SLL +L+G PL K + DE
Sbjct: 30 GQNGSGKSSLLDAILVGLYWPLRIKDIKKDE 60
>pdb|1QFX|B Chain B, Ph 2.5 Acid Phosphatase From Aspergillus Niger
pdb|1QFX|A Chain A, Ph 2.5 Acid Phosphatase From Aspergillus Niger
Length = 460
Score = 23.9 bits (50), Expect = 3.4
Identities = 9/21 (42%), Positives = 11/21 (51%)
Query: 50 DTLTSCNAKVDGSQYLNSGWN 70
D T+CN QYL+ WN
Sbjct: 417 DYTTTCNVSASYPQYLSFWWN 437
>pdb|1ECQ|A Chain A, E. Coli Glucarate Dehydratase Bound To 4-Deoxyglucarate
pdb|1EC9|A Chain A, E. Coli Glucarate Dehydratase Bound To Xylarohydroxamate
pdb|1EC9|D Chain D, E. Coli Glucarate Dehydratase Bound To Xylarohydroxamate
pdb|1EC9|C Chain C, E. Coli Glucarate Dehydratase Bound To Xylarohydroxamate
pdb|1EC8|A Chain A, E. Coli Glucarate Dehydratase Bound To Product 2,3-
Dihydroxy-5-Oxo-Hexanedioate
pdb|1ECQ|C Chain C, E. Coli Glucarate Dehydratase Bound To 4-Deoxyglucarate
pdb|1EC8|C Chain C, E. Coli Glucarate Dehydratase Bound To Product 2,3-
Dihydroxy-5-Oxo-Hexanedioate
pdb|1ECQ|B Chain B, E. Coli Glucarate Dehydratase Bound To 4-Deoxyglucarate
pdb|1EC8|B Chain B, E. Coli Glucarate Dehydratase Bound To Product 2,3-
Dihydroxy-5-Oxo-Hexanedioate
pdb|1EC9|B Chain B, E. Coli Glucarate Dehydratase Bound To Xylarohydroxamate
pdb|1ECQ|D Chain D, E. Coli Glucarate Dehydratase Bound To 4-Deoxyglucarate
pdb|1EC8|D Chain D, E. Coli Glucarate Dehydratase Bound To Product 2,3-
Dihydroxy-5-Oxo-Hexanedioate
pdb|1EC7|B Chain B, E. Coli Glucarate Dehydratase Native Enzyme
pdb|1EC7|C Chain C, E. Coli Glucarate Dehydratase Native Enzyme
pdb|1EC7|D Chain D, E. Coli Glucarate Dehydratase Native Enzyme
pdb|1EC7|A Chain A, E. Coli Glucarate Dehydratase Native Enzyme
Length = 446
Score = 22.7 bits (47), Expect = 7.6
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 22 GATAPLMAKPLLSDE-DLLKRVKLHNIKEDTLTSCNAKVDGSQYLNSGWNLSKEFPQVI 79
G + KP L E D+ + +K H + + G QYL GW + P ++
Sbjct: 387 GGLVQVPEKPGLGVEIDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMV 445
>pdb|1HHS|A Chain A, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
pdb|1HHS|B Chain B, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
pdb|1HHS|C Chain C, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
pdb|1HHT|P Chain P, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Template
pdb|1HHT|Q Chain Q, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Template
pdb|1HHT|R Chain R, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Template
pdb|1HI0|P Chain P, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Initiation Complex
pdb|1HI0|Q Chain Q, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Initiation Complex
pdb|1HI0|R Chain R, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Initiation Complex
pdb|1HI1|A Chain A, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Bound Ntp
pdb|1HI1|B Chain B, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Bound Ntp
pdb|1HI1|C Chain C, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Bound Ntp
Length = 664
Score = 22.7 bits (47), Expect = 7.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 9 KTLKTSLLAEVLLGATAPLMAKPLLSD 35
K +TSL V +GA AP LL D
Sbjct: 355 KLFETSLKLPVYVGAPAPEQGHTLLGD 381
>pdb|1HI8|A Chain A, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
pdb|1HI8|B Chain B, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Length = 664
Score = 22.7 bits (47), Expect = 7.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 9 KTLKTSLLAEVLLGATAPLMAKPLLSD 35
K +TSL V +GA AP LL D
Sbjct: 355 KLFETSLKLPVYVGAPAPEQGHTLLGD 381
>pdb|1JDF|C Chain C, Glucarate Dehydratase From E.Coli N341d Mutant
Length = 442
Score = 22.7 bits (47), Expect = 7.6
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 22 GATAPLMAKPLLSDE-DLLKRVKLHNIKEDTLTSCNAKVDGSQYLNSGWNLSKEFPQVI 79
G + KP L E D+ + +K H + + G QYL GW + P ++
Sbjct: 383 GGLVQVPEKPGLGVEIDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMV 441
>pdb|1QUA|A Chain A, Crystal Structure Of Acutolysin-C, A Hemorrhagic Toxin
From The Snake Venom Of Agkistrodon Acutus, At 2.2 A
Resolution
Length = 197
Score = 22.7 bits (47), Expect = 7.6
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 35 DEDLLKRVKLHNIKEDTLTSCNAKVDGSQYLNSGWN 70
+ DLLKR N + T T+ N G YL + N
Sbjct: 82 ETDLLKRTSNDNAQLLTATNFNGNTVGLAYLKTMCN 117
>pdb|1JDF|A Chain A, Glucarate Dehydratase From E.Coli N341d Mutant
Length = 442
Score = 22.7 bits (47), Expect = 7.6
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 22 GATAPLMAKPLLSDE-DLLKRVKLHNIKEDTLTSCNAKVDGSQYLNSGWNLSKEFPQVI 79
G + KP L E D+ + +K H + + G QYL GW + P ++
Sbjct: 383 GGLVQVPEKPGLGVEIDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMV 441
>pdb|1JCT|A Chain A, Glucarate Dehydratase, N341l Mutant Orthorhombic Form
pdb|1JCT|B Chain B, Glucarate Dehydratase, N341l Mutant Orthorhombic Form
Length = 446
Score = 22.7 bits (47), Expect = 7.6
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 22 GATAPLMAKPLLSDE-DLLKRVKLHNIKEDTLTSCNAKVDGSQYLNSGWNLSKEFPQVI 79
G + KP L E D+ + +K H + + G QYL GW + P ++
Sbjct: 387 GGLVQVPEKPGLGVEIDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMV 445
>pdb|1A9X|B Chain B, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|D Chain D, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|F Chain F, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|H Chain H, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
Length = 379
Score = 22.3 bits (46), Expect = 9.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 17 AEVLLGATAPLMAKPLLSDEDLLKRVKLHNI 47
A+ L+ PL+A + EDL +K HNI
Sbjct: 76 AQGLVIRDLPLIASNFRNTEDLSSYLKRHNI 106
>pdb|1C30|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|D Chain D, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|F Chain F, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|H Chain H, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C3O|B Chain B, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|D Chain D, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|F Chain F, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|H Chain H, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
Length = 382
Score = 22.3 bits (46), Expect = 9.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 17 AEVLLGATAPLMAKPLLSDEDLLKRVKLHNI 47
A+ L+ PL+A + EDL +K HNI
Sbjct: 77 AQGLVIRDLPLIASNFRNTEDLSSYLKRHNI 107
>pdb|1CS0|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
pdb|1CS0|D Chain D, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
pdb|1CS0|F Chain F, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
pdb|1CS0|H Chain H, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
pdb|1KEE|B Chain B, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|D Chain D, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|F Chain F, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|H Chain H, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
Length = 382
Score = 22.3 bits (46), Expect = 9.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 17 AEVLLGATAPLMAKPLLSDEDLLKRVKLHNI 47
A+ L+ PL+A + EDL +K HNI
Sbjct: 77 AQGLVIRDLPLIASNFRNTEDLSSYLKRHNI 107
>pdb|1KGD|A Chain A, Crystal Structure Of The Guanylate Kinase-Like Domain Of
Human Cask
Length = 180
Score = 22.3 bits (46), Expect = 9.9
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 9 KTLKTSLLAEVLLGATAPLMAKPLLSDEDLLKRVKLHNIKEDT------LTSCNAKVD 60
K L+T+ A ++ AP + L DE L + K +I + T LT N ++D
Sbjct: 109 KVLRTAEFAPFVVFIAAPTITPGLNEDESLQRLQKESDILQRTYAHYFDLTIINNEID 166
>pdb|1M6V|B Chain B, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|D Chain D, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|F Chain F, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|H Chain H, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
Length = 382
Score = 22.3 bits (46), Expect = 9.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 17 AEVLLGATAPLMAKPLLSDEDLLKRVKLHNI 47
A+ L+ PL+A + EDL +K HNI
Sbjct: 77 AQGLVIRDLPLIASNFRNTEDLSSYLKRHNI 107
>pdb|1DQW|A Chain A, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
pdb|1DQW|B Chain B, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
pdb|1DQW|C Chain C, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
pdb|1DQW|D Chain D, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
pdb|1DQX|A Chain A, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
Complexed To 6-Hydroxyuridine 5'-Phosphate (Bmp)
pdb|1DQX|B Chain B, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
Complexed To 6-Hydroxyuridine 5'-Phosphate (Bmp)
pdb|1DQX|C Chain C, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
Complexed To 6-Hydroxyuridine 5'-Phosphate (Bmp)
pdb|1DQX|D Chain D, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
Complexed To 6-Hydroxyuridine 5'-Phosphate (Bmp)
Length = 267
Score = 22.3 bits (46), Expect = 9.9
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 56 NAKVDGSQYLNSGW 69
+AKV+G +Y +GW
Sbjct: 243 DAKVEGERYRKAGW 256
>pdb|1JDB|F Chain F, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|C Chain C, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|I Chain I, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|L Chain L, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1CE8|B Chain B, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|D Chain D, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|F Chain F, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|H Chain H, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1BXR|B Chain B, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|D Chain D, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|F Chain F, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|H Chain H, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
Length = 382
Score = 22.3 bits (46), Expect = 9.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 17 AEVLLGATAPLMAKPLLSDEDLLKRVKLHNI 47
A+ L+ PL+A + EDL +K HNI
Sbjct: 77 AQGLVIRDLPLIASNFRNTEDLSSYLKRHNI 107
>pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
pdb|1IJQ|B Chain B, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
Length = 316
Score = 22.3 bits (46), Expect = 9.9
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 17 AEVLLGATAPLMAKPLLSDEDLLKRVKLHNIKE 49
A L G+ L+A+ LLS ED+ V HN+ +
Sbjct: 234 ANRLTGSDVNLLAENLLSPEDM---VLFHNLTQ 263
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.314 0.132 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 403,938
Number of Sequences: 13198
Number of extensions: 12049
Number of successful extensions: 53
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 24
length of query: 79
length of database: 2,899,336
effective HSP length: 55
effective length of query: 24
effective length of database: 2,173,446
effective search space: 52162704
effective search space used: 52162704
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 46 (22.3 bits)