BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645608|ref|NP_207784.1| hypothetical protein
[Helicobacter pylori 26695]
(83 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|2TNF|A Chain A, 1.4 A Resolution Structure Of Mouse Tum... 25 1.9
pdb|1JVX|A Chain A, Maltodextrin-Binding Protein Variant D2... 24 2.5
pdb|1MDQ| Maltodextrin-Binding Protein (Male322) (Maltose... 24 2.5
pdb|1JVY|A Chain A, Maltodextrin-Binding Protein Variant D2... 24 2.5
pdb|1B5D|A Chain A, Dcmp Hydroxymethylase From T4 (Intact) ... 23 4.3
pdb|1E5P|A Chain A, Crystal Structure Of Aphrodisin, A Sex ... 22 9.7
>pdb|2TNF|A Chain A, 1.4 A Resolution Structure Of Mouse Tumor Necrosis
Factor, Towards Modulation Of Its Selctivity And
Trimerisation
pdb|2TNF|B Chain B, 1.4 A Resolution Structure Of Mouse Tumor Necrosis
Factor, Towards Modulation Of Its Selctivity And
Trimerisation
pdb|2TNF|C Chain C, 1.4 A Resolution Structure Of Mouse Tumor Necrosis
Factor, Towards Modulation Of Its Selctivity And
Trimerisation
Length = 156
Score = 24.6 bits (52), Expect = 1.9
Identities = 7/30 (23%), Positives = 20/30 (66%)
Query: 35 KTTNLSNTDKYIIGTIQTEALEQEIEWFSQ 64
++++ +++DK + + +E+++EW SQ
Sbjct: 2 RSSSQNSSDKPVAHVVANHQVEEQLEWLSQ 31
>pdb|1JVX|A Chain A, Maltodextrin-Binding Protein Variant D207cA301GSP316C
Cross-Linked In Crystal
Length = 372
Score = 24.3 bits (51), Expect = 2.5
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 3 FAPMLLATINNSIGNKDKHVSLEYLIGLFMDKKTTNLSNTDKYIIGTIQTEALEQEI 59
F +L A IN + NK+ ++ E+L + + N DK + G++ ++ E+E+
Sbjct: 259 FVGVLSAGINAASPNKE--LAKEFLENYLLTDEGLEAVNKDKPLGGSVALKSYEEEL 313
>pdb|1MDQ| Maltodextrin-Binding Protein (Male322) (Maltose-Binding Protein)
Mutant With Ala 301 Replaced By Gly Ser (A301gs)
Complexed With Maltose
Length = 371
Score = 24.3 bits (51), Expect = 2.5
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 3 FAPMLLATINNSIGNKDKHVSLEYLIGLFMDKKTTNLSNTDKYIIGTIQTEALEQEI 59
F +L A IN + NK+ ++ E+L + + N DK + G++ ++ E+E+
Sbjct: 258 FVGVLSAGINAASPNKE--LAKEFLENYLLTDEGLEAVNKDKPLGGSVALKSYEEEL 312
>pdb|1JVY|A Chain A, Maltodextrin-Binding Protein Variant D207cA301GSP316C With
Beta-Mercaptoethanol Mixed Disulfides
Length = 372
Score = 24.3 bits (51), Expect = 2.5
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 3 FAPMLLATINNSIGNKDKHVSLEYLIGLFMDKKTTNLSNTDKYIIGTIQTEALEQEI 59
F +L A IN + NK+ ++ E+L + + N DK + G++ ++ E+E+
Sbjct: 259 FVGVLSAGINAASPNKE--LAKEFLENYLLTDEGLEAVNKDKPLGGSVALKSYEEEL 313
>pdb|1B5D|A Chain A, Dcmp Hydroxymethylase From T4 (Intact)
pdb|1B5D|B Chain B, Dcmp Hydroxymethylase From T4 (Intact)
pdb|1B5E|A Chain A, Dcmp Hydroxymethylase From T4
pdb|1B5E|B Chain B, Dcmp Hydroxymethylase From T4
pdb|1B49|A Chain A, Dcmp Hydroxymethylase From T4 (Phosphate-Bound)
pdb|1B49|C Chain C, Dcmp Hydroxymethylase From T4 (Phosphate-Bound)
Length = 246
Score = 23.5 bits (49), Expect = 4.3
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 43 DKYIIGTIQTEALEQEIEWF 62
+ +I G + E +++E+EW+
Sbjct: 45 EPFIFGALNDEYIQRELEWY 64
>pdb|1E5P|A Chain A, Crystal Structure Of Aphrodisin, A Sex Pheromone From
Female Hamster
pdb|1E5P|D Chain D, Crystal Structure Of Aphrodisin, A Sex Pheromone From
Female Hamster
pdb|1E5P|B Chain B, Crystal Structure Of Aphrodisin, A Sex Pheromone From
Female Hamster
pdb|1E5P|C Chain C, Crystal Structure Of Aphrodisin, A Sex Pheromone From
Female Hamster
Length = 151
Score = 22.3 bits (46), Expect = 9.7
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 62 FSQDYHIPMENILHVLS 78
F+ + IP+ENIL++L+
Sbjct: 129 FAHEKKIPVENILNILA 145
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.134 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 449,456
Number of Sequences: 13198
Number of extensions: 14424
Number of successful extensions: 22
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 6
length of query: 83
length of database: 2,899,336
effective HSP length: 59
effective length of query: 24
effective length of database: 2,120,654
effective search space: 50895696
effective search space used: 50895696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)