BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645609|ref|NP_207785.1| hypothetical protein
[Helicobacter pylori 26695]
(267 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1F20|A Chain A, Crystal Structure Of Rat Neuronal Nitri... 28 1.4
pdb|1RLR| Structure Of Ribonucleotide Reductase Protein R1 27 3.2
pdb|1M1J|A Chain A, Crystal Structure Of Native Chicken Fib... 26 5.4
pdb|1EI3|A Chain A, Crystal Structure Of Native Chicken Fib... 26 5.4
pdb|1IAO|B Chain B, Class Ii Mhc I-Ad In Complex With Ovalb... 25 7.1
pdb|1F3J|B Chain B, Histocompatibility Antigen I-Ag7 >gi|10... 25 7.1
pdb|1AL2|1 Chain 1, P1MAHONEY POLIOVIRUS, SINGLE SITE MUTAN... 25 7.1
pdb|2PLV|1 Chain 1, Poliovirus (Type 1, Mahoney Strain) >gi... 25 7.1
pdb|1AR6|1 Chain 1, P1MAHONEY POLIOVIRUS, DOUBLE MUTANT V11... 25 7.1
pdb|1HXS|1 Chain 1, Crystal Structure Of Mahoney Strain Of ... 25 7.1
pdb|1ES0|B Chain B, Crystal Structure Of The Murine Class I... 25 7.1
pdb|1AR9|1 Chain 1, P1MAHONEY POLIOVIRUS, SINGLE SITE MUTAN... 25 7.1
pdb|2IAD|B Chain B, Class Ii Mhc I-Ad In Complex With An In... 25 7.1
pdb|1AR7|1 Chain 1, P1MAHONEY POLIOVIRUS, DOUBLE MUTANT P10... 25 7.1
pdb|1CVE| Carbonic Anhydrase Ii (Carbonate Dehydratase)(H... 25 7.1
pdb|1THT|B Chain B, Thioesterase >gi|1065337|pdb|1THT|A Cha... 25 9.2
>pdb|1F20|A Chain A, Crystal Structure Of Rat Neuronal Nitric-Oxide Synthase
FadNADP+ DOMAIN AT 1.9A RESOLUTION
Length = 435
Score = 27.7 bits (60), Expect = 1.4
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 182 LSSQKITKQDLLTLQNSLQELDKKRYSIEIDMVEPISHYKDLSLSAYDFLIDKIDQIKTA 241
L++ + KQ LL L LQE ++ ++ MVE + + + + A L+ ++ ++
Sbjct: 153 LATNEKEKQRLLVLSKGLQEYEEWKWGKNPTMVEVLEEFPSIQMPA-TLLLTQLSLLQPR 211
Query: 242 TYSNS 246
YS S
Sbjct: 212 YYSIS 216
>pdb|1RLR| Structure Of Ribonucleotide Reductase Protein R1
Length = 761
Score = 26.6 bits (57), Expect = 3.2
Identities = 16/35 (45%), Positives = 20/35 (56%), Gaps = 7/35 (20%)
Query: 221 KDLSLSAYDFLIDKIDQIKTATYSNSHDNADDLDN 255
KDL L+AY F +KT Y N+ D+ DDL N
Sbjct: 716 KDL-LTAYKF------GVKTLYYQNTRDDIDDLSN 743
>pdb|1M1J|A Chain A, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
pdb|1M1J|D Chain D, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
Length = 491
Score = 25.8 bits (55), Expect = 5.4
Identities = 20/65 (30%), Positives = 32/65 (48%), Gaps = 3/65 (4%)
Query: 195 LQNSLQELDKKRYSIEIDMVEPISHYKDLSLSAYDFLIDK--IDQI-KTATYSNSHDNAD 251
LQNS+QE + +E+D+ I K ++D+ +DK D I K T ++S D
Sbjct: 137 LQNSIQEQVVEMKRLEVDIDIKIRACKGSCARSFDYQVDKEGYDNIQKHLTQASSIDMHP 196
Query: 252 DLDNS 256
D +
Sbjct: 197 DFQTT 201
>pdb|1EI3|A Chain A, Crystal Structure Of Native Chicken Fibrinogen
pdb|1EI3|D Chain D, Crystal Structure Of Native Chicken Fibrinogen
Length = 491
Score = 25.8 bits (55), Expect = 5.4
Identities = 20/65 (30%), Positives = 32/65 (48%), Gaps = 3/65 (4%)
Query: 195 LQNSLQELDKKRYSIEIDMVEPISHYKDLSLSAYDFLIDK--IDQI-KTATYSNSHDNAD 251
LQNS+QE + +E+D+ I K ++D+ +DK D I K T ++S D
Sbjct: 137 LQNSIQEQVVEMKRLEVDIDIKIRACKGSCARSFDYQVDKEGYDNIQKHLTQASSIDMHP 196
Query: 252 DLDNS 256
D +
Sbjct: 197 DFQTT 201
>pdb|1IAO|B Chain B, Class Ii Mhc I-Ad In Complex With Ovalbumin Peptide
323-339
Length = 222
Score = 25.4 bits (54), Expect = 7.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 198 SLQELDKKRYSIEIDMVEPISHYKDLSLSAYDFLIDKI 235
SL+ L++ +I + E ++H+ L S DF KI
Sbjct: 116 SLRRLEQPNVAISLSRTEALNHHNTLVCSVTDFYPAKI 153
>pdb|1F3J|B Chain B, Histocompatibility Antigen I-Ag7
pdb|1F3J|E Chain E, Histocompatibility Antigen I-Ag7
Length = 187
Score = 25.4 bits (54), Expect = 7.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 198 SLQELDKKRYSIEIDMVEPISHYKDLSLSAYDFLIDKI 235
SL+ L++ +I + E ++H+ L S DF KI
Sbjct: 86 SLRRLEQPNVAISLSRTEALNHHNTLVCSVTDFYPAKI 123
>pdb|1AL2|1 Chain 1, P1MAHONEY POLIOVIRUS, SINGLE SITE MUTANT V1160I
Length = 302
Score = 25.4 bits (54), Expect = 7.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 179 DKLLSSQKITKQDLLTLQNSLQELDKKRYSIEIDMV 214
DKL + KIT +D + L+ L+ R+ +E+ V
Sbjct: 102 DKLFAVWKITYKDTVQLRRKLEFFTYSRFDMELTFV 137
>pdb|2PLV|1 Chain 1, Poliovirus (Type 1, Mahoney Strain)
pdb|1DGI|1 Chain 1, Cryo-Em Structure Of Human Poliovirus(Serotype 1)complexed
With Three Domain Cd155,
Length = 288
Score = 25.4 bits (54), Expect = 7.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 179 DKLLSSQKITKQDLLTLQNSLQELDKKRYSIEIDMV 214
DKL + KIT +D + L+ L+ R+ +E+ V
Sbjct: 88 DKLFAVWKITYKDTVQLRRKLEFFTYSRFDMELTFV 123
>pdb|1AR6|1 Chain 1, P1MAHONEY POLIOVIRUS, DOUBLE MUTANT V1160I +P1095S
Length = 302
Score = 25.4 bits (54), Expect = 7.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 179 DKLLSSQKITKQDLLTLQNSLQELDKKRYSIEIDMV 214
DKL + KIT +D + L+ L+ R+ +E+ V
Sbjct: 102 DKLFAVWKITYKDTVQLRRKLEFFTYSRFDMELTFV 137
>pdb|1HXS|1 Chain 1, Crystal Structure Of Mahoney Strain Of Poliovirus At 2.2a
Resolution
Length = 302
Score = 25.4 bits (54), Expect = 7.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 179 DKLLSSQKITKQDLLTLQNSLQELDKKRYSIEIDMV 214
DKL + KIT +D + L+ L+ R+ +E+ V
Sbjct: 102 DKLFAVWKITYKDTVQLRRKLEFFTYSRFDMELTFV 137
>pdb|1ES0|B Chain B, Crystal Structure Of The Murine Class Ii Allele I-A(G7)
Complexed With The Glutamic Acid Decarboxylase (Gad65)
Peptide 207-220
Length = 221
Score = 25.4 bits (54), Expect = 7.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 198 SLQELDKKRYSIEIDMVEPISHYKDLSLSAYDFLIDKI 235
SL+ L++ +I + E ++H+ L S DF KI
Sbjct: 115 SLRRLEQPNVAISLSRTEALNHHNTLVCSVTDFYPAKI 152
>pdb|1AR9|1 Chain 1, P1MAHONEY POLIOVIRUS, SINGLE SITE MUTANT H2142Y
pdb|1ASJ|1 Chain 1, P1MAHONEY POLIOVIRUS, AT CRYOGENIC TEMPERATURE
pdb|1PO1|1 Chain 1, Poliovirus (Type 1, Mahoney) In Complex With R80633, An
Inhibitor Of Viral Replication
pdb|1PO2|1 Chain 1, Poliovirus (Type 1, Mahoney) In Complex With R77975, An
Inhibitor Of Viral Replication
pdb|1VBD|1 Chain 1, Poliovirus (Type 1, Mahoney Strain) Complexed With R78206
pdb|1POV|1 Chain 1, Mol_id: 1; Molecule: Poliovirus Native Empty Capsid (Type
1); Chain: 0, 1, 3; Heterogen: Ligand Unidentified
Experimentally But Presumed To Be A Lipid And Modeled As
Sphingosine
Length = 302
Score = 25.4 bits (54), Expect = 7.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 179 DKLLSSQKITKQDLLTLQNSLQELDKKRYSIEIDMV 214
DKL + KIT +D + L+ L+ R+ +E+ V
Sbjct: 102 DKLFAVWKITYKDTVQLRRKLEFFTYSRFDMELTFV 137
>pdb|2IAD|B Chain B, Class Ii Mhc I-Ad In Complex With An Influenza
Hemagglutinin Peptide 126-138
Length = 205
Score = 25.4 bits (54), Expect = 7.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 198 SLQELDKKRYSIEIDMVEPISHYKDLSLSAYDFLIDKI 235
SL+ L++ +I + E ++H+ L S DF KI
Sbjct: 105 SLRRLEQPNVAISLSRTEALNHHNTLVCSVTDFYPAKI 142
>pdb|1AR7|1 Chain 1, P1MAHONEY POLIOVIRUS, DOUBLE MUTANT P1095S + H2142Y
pdb|1AR8|1 Chain 1, P1MAHONEY POLIOVIRUS, MUTANT P1095S
Length = 302
Score = 25.4 bits (54), Expect = 7.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 179 DKLLSSQKITKQDLLTLQNSLQELDKKRYSIEIDMV 214
DKL + KIT +D + L+ L+ R+ +E+ V
Sbjct: 102 DKLFAVWKITYKDTVQLRRKLEFFTYSRFDMELTFV 137
>pdb|1CVE| Carbonic Anhydrase Ii (Carbonate Dehydratase)(Hca Ii)
(E.C.4.2.1.1) Mutant With His 119 Replaced By Asp
(H119d)
Length = 259
Score = 25.4 bits (54), Expect = 7.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 196 QNSLQELDKKRYSIEIDMVEPISHYKD 222
Q S +DKK+Y+ E+D+V + Y D
Sbjct: 102 QGSEHTVDKKKYAAELDLVHWNTKYGD 128
>pdb|1THT|B Chain B, Thioesterase
pdb|1THT|A Chain A, Thioesterase
Length = 305
Score = 25.0 bits (53), Expect = 9.2
Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Query: 138 DIYIESLENIIAKKITFRKTDN---KTRDIFDIAVALHNDNNLFDKLLSSQKITKQDLLT 194
D ++ + N I F ++ K +++D+ + + LL S ++L+
Sbjct: 190 DSTLDKVANTSVPLIAFTANNDDWVKQEEVYDMLAHIRTGHCKLYSLLGSSHDLGENLVV 249
Query: 195 LQNSLQELDKKRYS-------IEIDMVEP 216
L+N Q + K + I++D +EP
Sbjct: 250 LRNFYQSVTKAAIAMDGGSLEIDVDFIEP 278
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.136 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,531,560
Number of Sequences: 13198
Number of extensions: 62477
Number of successful extensions: 203
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 189
Number of HSP's gapped (non-prelim): 16
length of query: 267
length of database: 2,899,336
effective HSP length: 87
effective length of query: 180
effective length of database: 1,751,110
effective search space: 315199800
effective search space used: 315199800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)