BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645616|ref|NP_207792.1| hypothetical protein
[Helicobacter pylori 26695]
(94 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1EKU|B Chain B, Crystal Structure Of A Biologically Act... 30 0.056
pdb|1FYH|A Chain A, 1:1 Complex Between An Interferon Gamma... 27 0.48
pdb|1LXM|A Chain A, Crystal Structure Of Streptococcus Agal... 26 0.81
pdb|1HXY|D Chain D, Crystal Structure Of Staphylococcal Ent... 25 1.4
pdb|1EWC|A Chain A, Crystal Structure Of Zn2+ Loaded Staphy... 25 1.4
pdb|1ENF|A Chain A, Crystal Structure Of Staphylococcal Ent... 25 1.4
pdb|1F77|B Chain B, Staphylococcal Enterotoxin H Determined... 25 1.4
pdb|1DEQ|B Chain B, The Crystal Structure Of Modified Bovin... 24 2.4
pdb|1EA4|H Chain H, Transcriptional Repressor Copg22BP DSDN... 24 3.1
pdb|1FDJ|A Chain A, Fructose 1,6-Bisphosphate Aldolase From... 23 4.0
pdb|1QO5|A Chain A, Fructose 1,6-Bisphosphate Aldolase From... 23 4.0
pdb|2CPG|B Chain B, Transcriptional Repressor Copg >gi|6573... 23 6.9
pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer 23 6.9
pdb|1FZA|B Chain B, Crystal Structure Of Fibrinogen Fragmen... 23 6.9
pdb|1D6H|A Chain A, Chalone Synthase (N336a Mutant Complexe... 23 6.9
pdb|1CS1|A Chain A, Cystathionine Gamma-Synthase (Cgs) From... 22 9.0
pdb|1H78|A Chain A, Structural Basis For Allosteric Substra... 22 9.0
>pdb|1EKU|B Chain B, Crystal Structure Of A Biologically Active Single Chain
Mutant Of Human Ifn-Gamma
pdb|1EKU|A Chain A, Crystal Structure Of A Biologically Active Single Chain
Mutant Of Human Ifn-Gamma
Length = 265
Score = 29.6 bits (65), Expect = 0.056
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 3 FKNTKKDRL---------SDLENRFENANKHETNKHEKEDRKKAHTLYISEKVMNSVEEY 53
FKN K D+ D+ +F N+NK + + EK L + K ++ + +
Sbjct: 58 FKNFKDDQSIQKSVETIKEDMNVKFFNSNKKKRDDFEKLTNYSVTDLNVQRKAIDELIQV 117
Query: 54 LNEFGAFRENKSVFVQDA 71
+ EF + + +V++A
Sbjct: 118 MAEFSTEEQQEGPYVKEA 135
>pdb|1FYH|A Chain A, 1:1 Complex Between An Interferon Gamma Single-Chain
Variant And Its Receptor
pdb|1FYH|D Chain D, 1:1 Complex Between An Interferon Gamma Single-Chain
Variant And Its Receptor
Length = 258
Score = 26.6 bits (57), Expect = 0.48
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 3 FKNTKKDRL---------SDLENRFENANKHETNKHEKEDRKKAHTLYISEKVMNSVEEY 53
FKN K D+ D+ +F N+NK + + EK L + K ++ + +
Sbjct: 58 FKNFKDDQSIQKSVETIKEDMNVKFFNSNKKKRDDFEKLTNYSVTDLNVQRKAIDELIQV 117
Query: 54 LNEFGA 59
+ E GA
Sbjct: 118 MAELGA 123
>pdb|1LXM|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase Complexed With Hexasaccharide Unit Of Hyaluronan
pdb|1I8Q|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase Complexed With Enzyme Product, Unsaturated
Disaccharide Hyaluronan
pdb|1F1S|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase At 2.1 Angstrom Resolution
Length = 814
Score = 25.8 bits (55), Expect = 0.81
Identities = 15/58 (25%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Query: 12 SDLENRFENANKHETNKHEKEDRKKAHTLYISEKVMNSVEEYLNEFGAFRENKSVFVQ 69
S+++N N T K+D K +T Y++ K ++ + + F + KSVF++
Sbjct: 607 SNIKNTNGIGNVSTTIDQRKDDSKTPYTTYVNGKTIDLKQASSQQ---FTDTKSVFLE 661
>pdb|1HXY|D Chain D, Crystal Structure Of Staphylococcal Enterotoxin H In
Complex With Human Mhc Class Ii
Length = 213
Score = 25.0 bits (53), Expect = 1.4
Identities = 19/71 (26%), Positives = 33/71 (45%), Gaps = 3/71 (4%)
Query: 3 FKNTKKDRLSDLENRFENANKHETNKHEKEDRKKAHTLYISEKVMNSVEEYLNEFGAFRE 62
F+N + D +DL +F A+ + K++ D A Y EK+ ++ E L +G
Sbjct: 43 FRN-QGDSGNDLRVKFATADLAQKFKNKNVDIYGASFYYKCEKISENISECL--YGGTTL 99
Query: 63 NKSVFVQDAII 73
N Q+ +I
Sbjct: 100 NSEKLAQERVI 110
>pdb|1EWC|A Chain A, Crystal Structure Of Zn2+ Loaded Staphylococcal
Enterotoxin H
Length = 214
Score = 25.0 bits (53), Expect = 1.4
Identities = 19/71 (26%), Positives = 33/71 (45%), Gaps = 3/71 (4%)
Query: 3 FKNTKKDRLSDLENRFENANKHETNKHEKEDRKKAHTLYISEKVMNSVEEYLNEFGAFRE 62
F+N + D +DL +F A+ + K++ D A Y EK+ ++ E L +G
Sbjct: 42 FRN-QGDSGNDLRVKFATADLAQKFKNKNVDIYGASFYYKCEKISENISECL--YGGTTL 98
Query: 63 NKSVFVQDAII 73
N Q+ +I
Sbjct: 99 NSEKLAQERVI 109
>pdb|1ENF|A Chain A, Crystal Structure Of Staphylococcal Enterotoxin H
Determined To 1.69 A Resolution
Length = 212
Score = 25.0 bits (53), Expect = 1.4
Identities = 19/71 (26%), Positives = 33/71 (45%), Gaps = 3/71 (4%)
Query: 3 FKNTKKDRLSDLENRFENANKHETNKHEKEDRKKAHTLYISEKVMNSVEEYLNEFGAFRE 62
F+N + D +DL +F A+ + K++ D A Y EK+ ++ E L +G
Sbjct: 42 FRN-QGDSGNDLRVKFATADLAQKFKNKNVDIYGASFYYKCEKISENISECL--YGGTTL 98
Query: 63 NKSVFVQDAII 73
N Q+ +I
Sbjct: 99 NSEKLAQERVI 109
>pdb|1F77|B Chain B, Staphylococcal Enterotoxin H Determined To 2.4 A
Resolution
pdb|1F77|A Chain A, Staphylococcal Enterotoxin H Determined To 2.4 A
Resolution
Length = 217
Score = 25.0 bits (53), Expect = 1.4
Identities = 19/71 (26%), Positives = 33/71 (45%), Gaps = 3/71 (4%)
Query: 3 FKNTKKDRLSDLENRFENANKHETNKHEKEDRKKAHTLYISEKVMNSVEEYLNEFGAFRE 62
F+N + D +DL +F A+ + K++ D A Y EK+ ++ E L +G
Sbjct: 43 FRN-QGDSGNDLRVKFATADLAQKFKNKNVDIYGASFYYKCEKISENISECL--YGGTTL 99
Query: 63 NKSVFVQDAII 73
N Q+ +I
Sbjct: 100 NSEKLAQERVI 110
>pdb|1DEQ|B Chain B, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|E Chain E, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|O Chain O, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|R Chain R, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
Length = 408
Score = 24.3 bits (51), Expect = 2.4
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 4 KNTKKDRLSDLENRFENANKHETNKHEKEDRKKAHTLYISEKVMNSVEEYLNEFGAFREN 63
KN K R + +++ N++ N++ K H LYI E V N++ L + EN
Sbjct: 69 KNMWKGRQNQVQD-----NENVVNEYSSHLEK--HQLYIDETVKNNIPTKLRVLRSILEN 121
>pdb|1EA4|H Chain H, Transcriptional Repressor Copg22BP DSDNA COMPLEX
pdb|1EA4|F Chain F, Transcriptional Repressor Copg22BP DSDNA COMPLEX
pdb|1EA4|E Chain E, Transcriptional Repressor Copg22BP DSDNA COMPLEX
pdb|1EA4|J Chain J, Transcriptional Repressor Copg22BP DSDNA COMPLEX
pdb|1EA4|L Chain L, Transcriptional Repressor Copg22BP DSDNA COMPLEX
pdb|1B01|A Chain A, Transcriptional Repressor CopgDNA COMPLEX
pdb|1B01|B Chain B, Transcriptional Repressor CopgDNA COMPLEX
pdb|1EA4|D Chain D, Transcriptional Repressor Copg22BP DSDNA COMPLEX
pdb|1EA4|K Chain K, Transcriptional Repressor Copg22BP DSDNA COMPLEX
pdb|1EA4|A Chain A, Transcriptional Repressor Copg22BP DSDNA COMPLEX
pdb|1EA4|G Chain G, Transcriptional Repressor Copg22BP DSDNA COMPLEX
pdb|1EA4|B Chain B, Transcriptional Repressor Copg22BP DSDNA COMPLEX
Length = 45
Score = 23.9 bits (50), Expect = 3.1
Identities = 14/47 (29%), Positives = 26/47 (54%), Gaps = 3/47 (6%)
Query: 35 KKAHTLYISEKVMNSVEEYLNEFGAFRENKSVFVQDAIIFYLEYKKK 81
KK T+ +SE V+ ++E+ E G +KS + A+ Y + ++K
Sbjct: 2 KKRLTITLSESVLENLEKMAREMGL---SKSAMISVALENYKKGQEK 45
>pdb|1FDJ|A Chain A, Fructose 1,6-Bisphosphate Aldolase From Rabbit Liver
pdb|1FDJ|B Chain B, Fructose 1,6-Bisphosphate Aldolase From Rabbit Liver
pdb|1FDJ|C Chain C, Fructose 1,6-Bisphosphate Aldolase From Rabbit Liver
pdb|1FDJ|D Chain D, Fructose 1,6-Bisphosphate Aldolase From Rabbit Liver
Length = 363
Score = 23.5 bits (49), Expect = 4.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 33 DRKKAHTLYISEKVMNSVEEYLNEFGAFRE 62
D H Y++EKV+ +V + LN+ + E
Sbjct: 195 DHDLEHCQYVTEKVLAAVYKALNDHHVYLE 224
>pdb|1QO5|A Chain A, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|M Chain M, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|P Chain P, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|H Chain H, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|D Chain D, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|J Chain J, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|E Chain E, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|K Chain K, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|F Chain F, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|B Chain B, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|C Chain C, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|G Chain G, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|I Chain I, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|L Chain L, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|N Chain N, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|O Chain O, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|Q Chain Q, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|R Chain R, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
Length = 363
Score = 23.5 bits (49), Expect = 4.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 33 DRKKAHTLYISEKVMNSVEEYLNEFGAFRE 62
D H Y++EKV+ +V + LN+ + E
Sbjct: 195 DHDLEHCQYVTEKVLAAVYKALNDHHVYLE 224
>pdb|2CPG|B Chain B, Transcriptional Repressor Copg
pdb|2CPG|A Chain A, Transcriptional Repressor Copg
pdb|2CPG|C Chain C, Transcriptional Repressor Copg
Length = 45
Score = 22.7 bits (47), Expect = 6.9
Identities = 13/41 (31%), Positives = 22/41 (52%), Gaps = 3/41 (7%)
Query: 35 KKAHTLYISEKVMNSVEEYLNEFGAFRENKSVFVQDAIIFY 75
KK T+ +SE V+ ++E+ E G +KS + A+ Y
Sbjct: 2 KKRLTITLSESVLENLEKMAREMGL---SKSAMISVALENY 39
>pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer
Length = 419
Score = 22.7 bits (47), Expect = 6.9
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 8 KDRLS-DLENRFENANKHETNKHEKEDRKKAHTLYISEK 45
K++LS D EN H+ ++H+ ++ +K L +K
Sbjct: 65 KEKLSKDAENHKAYLKSHQVHRHKLKEMEKEEPLLNEDK 103
>pdb|1FZA|B Chain B, Crystal Structure Of Fibrinogen Fragment D
pdb|1FZA|E Chain E, Crystal Structure Of Fibrinogen Fragment D
pdb|1FZB|B Chain B, Crystal Structure Of Crosslinked Fragment D
pdb|1FZB|E Chain E, Crystal Structure Of Crosslinked Fragment D
pdb|1FZE|B Chain B, Crystal Structure Of Fragment Double-D From Human Fibrin
pdb|1FZC|B Chain B, Crystal Structure Of Fragment Double-D From Human Fibrin
With Two Different Bound Ligands
pdb|1FZC|E Chain E, Crystal Structure Of Fragment Double-D From Human Fibrin
With Two Different Bound Ligands
pdb|1FZE|E Chain E, Crystal Structure Of Fragment Double-D From Human Fibrin
pdb|1FZG|B Chain B, Crystal Structure Of Fragment D From Human Fibrinogen
With The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|1FZF|B Chain B, Crystal Structure Of Fragment Double-D From Human Fibrin
With The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|1FZG|E Chain E, Crystal Structure Of Fragment D From Human Fibrinogen
With The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|1FZF|E Chain E, Crystal Structure Of Fragment Double-D From Human Fibrin
With The Peptide Ligand Gly-His-Arg-Pro-Amide
Length = 328
Score = 22.7 bits (47), Expect = 6.9
Identities = 13/42 (30%), Positives = 21/42 (49%), Gaps = 2/42 (4%)
Query: 22 NKHETNKHEKEDRKKAHTLYISEKVMNSVEEYLNEFGAFREN 63
N++ N++ E K H LYI E V +++ L + EN
Sbjct: 2 NENVVNEYSSELEK--HQLYIDETVNSNIPTNLRVLRSILEN 41
>pdb|1D6H|A Chain A, Chalone Synthase (N336a Mutant Complexed With Coa)
Length = 387
Score = 22.7 bits (47), Expect = 6.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 40 LYISEKVMNSVEEYLNEFGAFRENKSVFVQD 70
L + + MN+ E L+E+GA +F+ D
Sbjct: 315 LALKPEKMNATREVLSEYGAMSSACVLFILD 345
>pdb|1CS1|A Chain A, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|B Chain B, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|C Chain C, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|D Chain D, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
Length = 386
Score = 22.3 bits (46), Expect = 9.0
Identities = 9/16 (56%), Positives = 12/16 (74%)
Query: 8 KDRLSDLENRFENANK 23
+D ++DLEN F ANK
Sbjct: 370 EDLIADLENGFRAANK 385
>pdb|1H78|A Chain A, Structural Basis For Allosteric Substrate Specificity
Regulation In Class Iii Ribonucleotide Reductases: Nrdd
In Complex With Dctp.
pdb|1H7A|A Chain A, Structural Basis For Allosteric Substrate Specificity
Regulation In Class Iii Ribonucleotide Reductases: Nrdd
In Complex With Datp
pdb|1H77|A Chain A, Structural Basis For Allosteric Substrate Specificity
Regulation In Class Iii Ribonucleotide Reductases: Nrdd
In Complex With Dgtp
pdb|1H79|A Chain A, Structural Basis For Allosteric Substrate Specificity
Regulation In Class Iii Ribonucleotide Reductases: Nrdd
In Complex With Dttp
pdb|1H7B|A Chain A, Structural Basis For Allosteric Substrate Specificity
Regulation In Class Iii Ribonucleotide Reductases,
Native Nrdd
Length = 605
Score = 22.3 bits (46), Expect = 9.0
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 66 VFVQDAIIFYLEYKKKEMKQMLLDKASK 93
+FV++ + Y + ++KQ+ L+ ASK
Sbjct: 236 MFVEEGVNLYKDDPNYDIKQLALECASK 263
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.312 0.129 0.339
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 482,237
Number of Sequences: 13198
Number of extensions: 16689
Number of successful extensions: 35
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 18
length of query: 94
length of database: 2,899,336
effective HSP length: 70
effective length of query: 24
effective length of database: 1,975,476
effective search space: 47411424
effective search space used: 47411424
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 46 (22.3 bits)