BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644731|ref|NP_206901.1| hypothetical protein
[Helicobacter pylori 26695]
(253 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fuse... 26 3.9
pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain 26 5.1
pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb... 26 5.1
pdb|1MIO|C Chain C, Nitrogenase Molybdenum-Iron Protein 26 5.1
pdb|1LJ7|A Chain A, Crystal Structure Of Calcium-Depleted H... 26 5.1
pdb|1AK5| Inosine Monophosphate Dehydrogenase (Impdh) Fro... 25 6.6
pdb|1MIO|A Chain A, Nitrogenase Molybdenum-Iron Protein 25 6.6
pdb|1CEN| Cellulase (Celc) Mutant With Glu 140 Replaced B... 25 8.6
pdb|1CEC| Glycosyl Hydrolase, Cellulase, Family A5 OF Cel... 25 8.6
pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lya... 25 8.6
pdb|7FAB|H Chain H, Immunoglobulin Fab' New (Lambda Light C... 25 8.6
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 26.2 bits (56), Expect = 3.9
Identities = 19/60 (31%), Positives = 32/60 (52%), Gaps = 4/60 (6%)
Query: 1 MKTLFSIYLFLSLNPLFLEANEITWSKFLENFKNKN----DDDKPKPLTIDKNNEKQQIL 56
+K++ I ++ LFL N++T K L N KN D++K K L+ K+ +K + L
Sbjct: 58 IKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 117
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 25.8 bits (55), Expect = 5.1
Identities = 19/60 (31%), Positives = 32/60 (52%), Gaps = 4/60 (6%)
Query: 1 MKTLFSIYLFLSLNPLFLEANEITWSKFLENFKNKN----DDDKPKPLTIDKNNEKQQIL 56
+K++ I ++ LFL N++T K L N KN D++K K L+ K+ +K + L
Sbjct: 53 IKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL 112
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 25.8 bits (55), Expect = 5.1
Identities = 19/60 (31%), Positives = 32/60 (52%), Gaps = 4/60 (6%)
Query: 1 MKTLFSIYLFLSLNPLFLEANEITWSKFLENFKNKN----DDDKPKPLTIDKNNEKQQIL 56
+K++ I ++ LFL N++T K L N KN D++K K L+ K+ +K + L
Sbjct: 55 IKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL 114
>pdb|1MIO|C Chain C, Nitrogenase Molybdenum-Iron Protein
Length = 533
Score = 25.8 bits (55), Expect = 5.1
Identities = 16/56 (28%), Positives = 28/56 (49%), Gaps = 2/56 (3%)
Query: 165 SYLGIALEQ--GVLLVDTIKPGAITTIIPRTKKTFFQAPLRFGFIVDFIGYLSLQL 218
SY G+ E G +L+D + + ++ + K F A ++ F++ G LS QL
Sbjct: 425 SYGGMMKEMHDGTILIDDMNHHDMEVVLEKLKPDMFFAGIKEKFVIQKGGVLSKQL 480
>pdb|1LJ7|A Chain A, Crystal Structure Of Calcium-Depleted Human C-Reactive
Protein From Perfectly Twinned Data
pdb|1LJ7|B Chain B, Crystal Structure Of Calcium-Depleted Human C-Reactive
Protein From Perfectly Twinned Data
pdb|1LJ7|C Chain C, Crystal Structure Of Calcium-Depleted Human C-Reactive
Protein From Perfectly Twinned Data
pdb|1LJ7|D Chain D, Crystal Structure Of Calcium-Depleted Human C-Reactive
Protein From Perfectly Twinned Data
pdb|1LJ7|E Chain E, Crystal Structure Of Calcium-Depleted Human C-Reactive
Protein From Perfectly Twinned Data
pdb|1LJ7|F Chain F, Crystal Structure Of Calcium-Depleted Human C-Reactive
Protein From Perfectly Twinned Data
pdb|1LJ7|G Chain G, Crystal Structure Of Calcium-Depleted Human C-Reactive
Protein From Perfectly Twinned Data
pdb|1LJ7|H Chain H, Crystal Structure Of Calcium-Depleted Human C-Reactive
Protein From Perfectly Twinned Data
pdb|1LJ7|I Chain I, Crystal Structure Of Calcium-Depleted Human C-Reactive
Protein From Perfectly Twinned Data
pdb|1LJ7|J Chain J, Crystal Structure Of Calcium-Depleted Human C-Reactive
Protein From Perfectly Twinned Data
pdb|1B09|A Chain A, Human C-Reactive Protein Complexed With Phosphocholine
pdb|1B09|B Chain B, Human C-Reactive Protein Complexed With Phosphocholine
pdb|1B09|C Chain C, Human C-Reactive Protein Complexed With Phosphocholine
pdb|1B09|D Chain D, Human C-Reactive Protein Complexed With Phosphocholine
pdb|1B09|E Chain E, Human C-Reactive Protein Complexed With Phosphocholine
pdb|1GNH|A Chain A, Human C-Reactive Protein
pdb|1GNH|B Chain B, Human C-Reactive Protein
pdb|1GNH|C Chain C, Human C-Reactive Protein
pdb|1GNH|D Chain D, Human C-Reactive Protein
pdb|1GNH|E Chain E, Human C-Reactive Protein
pdb|1GNH|F Chain F, Human C-Reactive Protein
pdb|1GNH|G Chain G, Human C-Reactive Protein
pdb|1GNH|H Chain H, Human C-Reactive Protein
pdb|1GNH|I Chain I, Human C-Reactive Protein
pdb|1GNH|J Chain J, Human C-Reactive Protein
Length = 206
Score = 25.8 bits (55), Expect = 5.1
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 12/74 (16%)
Query: 57 DKNQQILKRALEKSLKFFFIF-----------GYN-YSQATFSTSNQTLTFVANSIGFNT 104
D + LK L K LK F + GY+ +S AT N+ L F + IG++
Sbjct: 16 DTSYVSLKAPLTKPLKAFTVCLHFYTELSSTRGYSIFSYATKRQDNEILIFWSKDIGYSF 75
Query: 105 ATGLEHFLRNHPKV 118
G L P+V
Sbjct: 76 TVGGSEILFEVPEV 89
>pdb|1AK5| Inosine Monophosphate Dehydrogenase (Impdh) From Tritrichomonas
Foetus
Length = 503
Score = 25.4 bits (54), Expect = 6.6
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 1 MKTLFSIYLFLSLNPLFLEANEITWSKFLENFKNKNDDDKPKPLTIDKNNEKQQI 55
M T FS + + EAN+I W K L +DD + + K+ ++ Q+
Sbjct: 166 MMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQV 220
>pdb|1MIO|A Chain A, Nitrogenase Molybdenum-Iron Protein
Length = 525
Score = 25.4 bits (54), Expect = 6.6
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 171 LEQGVLLVDTIKPGAITTIIPRTKKTFFQAPLRFGFIVDFIGYLSLQL 218
+ G +L+D + + ++ + K F A ++ F++ G LS QL
Sbjct: 433 MHDGTILIDDMNHHDMEVVLEKLKPDMFFAGIKEKFVIQKGGVLSKQL 480
>pdb|1CEN| Cellulase (Celc) Mutant With Glu 140 Replaced By Gln Complexed
With Cellohexaose
pdb|1CEO| Cellulase (Celc) Mutant With Glu 140 Replaced By Gln
Length = 343
Score = 25.0 bits (53), Expect = 8.6
Identities = 27/105 (25%), Positives = 42/105 (39%), Gaps = 4/105 (3%)
Query: 18 LEANEITWSKF-LENFKNKNDDDKPKPLTIDKNNEKQQILDKN-QQILKRALEKSLKFFF 75
+E + W+K LE K + D L I NN KN I + + F+
Sbjct: 142 VEPDSTRWNKLMLECIKAIREIDSTMWLYIGGNNYNSPDELKNLADIDDDYIVYNFHFYN 201
Query: 76 IFGYNYSQATFSTSNQTLTFVANSIGFNTATGLEHFLRNHPKVGF 120
F + + +A +S S G G+E F++N+PK F
Sbjct: 202 PFFFTHQKAHWSESAMAYNRTVKYPG--QYEGIEEFVKNNPKYSF 244
>pdb|1CEC| Glycosyl Hydrolase, Cellulase, Family A5 OF CellulasesGLYCOSYL
HYDROLASES, CLOSTRIDIUM THERMOCELLUM, Endoglucanase C
Mol_id: 1; Molecule: Endoglucanase Celc; Chain: Null;
Synonym: Egc, Cellulase Celc, Endo-1,4-Beta-Glucanase
Celc; Ec: 3.2.1.4; Engineered: Yes; Other_details:
Cellulase Family A5
Length = 343
Score = 25.0 bits (53), Expect = 8.6
Identities = 27/105 (25%), Positives = 42/105 (39%), Gaps = 4/105 (3%)
Query: 18 LEANEITWSKF-LENFKNKNDDDKPKPLTIDKNNEKQQILDKN-QQILKRALEKSLKFFF 75
+E + W+K LE K + D L I NN KN I + + F+
Sbjct: 142 VEPDSTRWNKLMLECIKAIREIDSTMWLYIGGNNYNSPDELKNLADIDDDYIVYNFHFYN 201
Query: 76 IFGYNYSQATFSTSNQTLTFVANSIGFNTATGLEHFLRNHPKVGF 120
F + + +A +S S G G+E F++N+PK F
Sbjct: 202 PFFFTHQKAHWSESAMAYNRTVKYPG--QYEGIEEFVKNNPKYSF 244
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 25.0 bits (53), Expect = 8.6
Identities = 9/38 (23%), Positives = 20/38 (51%)
Query: 124 SVYNYFHSVSLSQPQTLMVQNYGGALDFSWIFVDKNIY 161
+V+N + ++L + QT + N G +++ W I+
Sbjct: 8 AVFNSINYLNLPEVQTALHANVSGIVEYPWTVCSNTIF 45
>pdb|7FAB|H Chain H, Immunoglobulin Fab' New (Lambda Light Chain)
Length = 217
Score = 25.0 bits (53), Expect = 8.6
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 150 DFSWIFVDKNIYRFRSYLGIALEQGVLLVDTIKPGAITTIIPRTKKTF 197
D+ W +V + R ++G G L+D G +T ++ +K F
Sbjct: 31 DYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQF 78
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.325 0.141 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,428,483
Number of Sequences: 13198
Number of extensions: 57670
Number of successful extensions: 131
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 126
Number of HSP's gapped (non-prelim): 11
length of query: 253
length of database: 2,899,336
effective HSP length: 86
effective length of query: 167
effective length of database: 1,764,308
effective search space: 294639436
effective search space used: 294639436
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)