BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645617|ref|NP_207793.1| hypothetical protein
[Helicobacter pylori 26695]
(394 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1FIO|A Chain A, Crystal Structure Of Yeast T-Snare Prot... 37 0.005
pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin 28 1.4
pdb|1TLK| Telokin (E.C.2.7.1.117) 28 1.4
>pdb|1FIO|A Chain A, Crystal Structure Of Yeast T-Snare Protein Sso1
Length = 196
Score = 36.6 bits (83), Expect = 0.005
Identities = 28/97 (28%), Positives = 52/97 (52%), Gaps = 12/97 (12%)
Query: 285 QSAGLLRKNKGVLIAFATDICME-RNEHKKEEFISLKDSCTQSQAKIYNNKERFDKFIQD 343
+ A LR + +A ATD+ + +NE K + + D+ Q+QA+ N+++RF K IQD
Sbjct: 42 EQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGIHDTNKQAQAE--NSRQRFLKLIQD 99
Query: 344 YQKDLKTCLLDTS---NTKEEVEQNFSQCQKEQLRDD 377
Y+ ++D++ KE+ ++ + Q E D+
Sbjct: 100 YR------IVDSNYKEENKEQAKRQYMIIQPEATEDE 130
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 28.5 bits (62), Expect = 1.4
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 159 EAFEKEYAQYKPYIIPYFTK 178
+AF +E A+ KP++ PYFTK
Sbjct: 27 DAFLEEVAEEKPHVKPYFTK 46
>pdb|1TLK| Telokin (E.C.2.7.1.117)
Length = 154
Score = 28.5 bits (62), Expect = 1.4
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 159 EAFEKEYAQYKPYIIPYFTK 178
+AF +E A+ KP++ PYFTK
Sbjct: 27 DAFLEEVAEEKPHVKPYFTK 46
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.133 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,253,582
Number of Sequences: 13198
Number of extensions: 92661
Number of successful extensions: 228
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 224
Number of HSP's gapped (non-prelim): 4
length of query: 394
length of database: 2,899,336
effective HSP length: 90
effective length of query: 304
effective length of database: 1,711,516
effective search space: 520300864
effective search space used: 520300864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)