BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645618|ref|NP_207794.1| hypothetical protein
[Helicobacter pylori 26695]
(370 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1QNI|A Chain A, Crystal Structure Of Nitrous Oxide Redu... 30 0.57
pdb|2ILK| Crystal Structure Of Human Interleukin-10 At 1.... 29 0.74
pdb|1ILK| Interleukin-10 29 0.74
pdb|1QS1|A Chain A, Crystal Structure Of Vegetative Insecti... 28 1.7
pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In N... 28 2.2
pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomeras... 28 2.2
pdb|1LK3|A Chain A, Engineered Human Interleukin-10 Monomer... 28 2.2
pdb|1A36|A Chain A, Human Dna Topoisomerase I (70 Kda) In N... 28 2.2
pdb|1A31|A Chain A, Human Reconstituted Dna Topoisomerase I... 28 2.2
pdb|1VLK| Structure Of Viral Interleukin-10 28 2.2
pdb|1A35|A Chain A, Human Reconstituted Dna Topoisomerase I... 28 2.2
pdb|1A9U| The Complex Structure Of The Map Kinase P38SB20... 27 2.8
pdb|1IAN| Human P38 Map Kinase Inhibitor Complex 27 3.7
pdb|1P38| The Structure Of The Map Kinase P38 At 2.1 Angs... 27 3.7
pdb|1WFC| Structure Of Apo, Unphosphorylated, P38 Mitogen... 27 4.8
pdb|1EZV|A Chain A, Structure Of The Yeast Cytochrome Bc1 C... 27 4.8
pdb|1KB9|A Chain A, Yeast Cytochrome Bc1 Complex 27 4.8
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Co... 26 6.3
pdb|1L9X|B Chain B, Structure Of Gamma-Glutamyl Hydrolase >... 26 6.3
pdb|1AIP|C Chain C, Ef-Tu Ef-Ts Complex From Thermus Thermo... 26 6.3
pdb|1DI9|A Chain A, The Structure Of P38 Mitogen-Activated ... 26 6.3
pdb|1JX6|A Chain A, Crystal Structure Of Luxp From Vibrio H... 26 6.3
pdb|1BJ7| Bovine Lipocalin Allergen Bos D 2 26 6.3
pdb|1LEW|A Chain A, Crystal Structure Of Map Kinase P38 Com... 26 8.2
pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-... 26 8.2
pdb|1FKW| Murine Adenosine Deaminase (D295e) 26 8.2
pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure... 26 8.2
pdb|1DQI|A Chain A, Crystal Structure Of Superoxide Reducta... 26 8.2
pdb|1JNK| The C-Jun N-Terminal Kinase (Jnk3s) Complexed W... 26 8.2
pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into C... 26 8.2
pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrom... 26 8.2
pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain ... 26 8.2
>pdb|1QNI|A Chain A, Crystal Structure Of Nitrous Oxide Reductase From
Pseudomonas Nautica, At 2.4a Resolution
pdb|1QNI|B Chain B, Crystal Structure Of Nitrous Oxide Reductase From
Pseudomonas Nautica, At 2.4a Resolution
pdb|1QNI|C Chain C, Crystal Structure Of Nitrous Oxide Reductase From
Pseudomonas Nautica, At 2.4a Resolution
pdb|1QNI|D Chain D, Crystal Structure Of Nitrous Oxide Reductase From
Pseudomonas Nautica, At 2.4a Resolution
pdb|1QNI|E Chain E, Crystal Structure Of Nitrous Oxide Reductase From
Pseudomonas Nautica, At 2.4a Resolution
pdb|1QNI|F Chain F, Crystal Structure Of Nitrous Oxide Reductase From
Pseudomonas Nautica, At 2.4a Resolution
Length = 581
Score = 29.6 bits (65), Expect = 0.57
Identities = 38/194 (19%), Positives = 79/194 (40%), Gaps = 23/194 (11%)
Query: 103 LEKNYKDLRALKEEFSKDLETDLSHSKKRFELYTRLKSMSKVFISKSIVK-NLEKIALDF 161
L+ ++D L++ + E L F+ R + + +FI + K N+ +
Sbjct: 299 LDDLFEDKIELRDTIVAEPELGLGPLHTTFD--GRGNAYTTLFIDSQVCKWNIADAIKHY 356
Query: 162 KSDRHSISQRAFEFFKYMNYQNLSLTDKGN-----MFLVAKFFKDSAL-----------L 205
DR + ++ + + + SLT+ + + +++KF KD L L
Sbjct: 357 NGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRFLPVGPLHPENDQL 416
Query: 206 VNIARFEMKKIDDSVKNSNPQDNLLDKQVWLNLLEHLKRLEEENYCFAKKRKEFLETRAM 265
++I+ EMK + D + P D +L ++ + K++ E N + + E +
Sbjct: 417 IDISGEEMKLVHDGPTYAEPHDCILVRRDQIK----TKKIYERNDPYFASCRAQAEKDGV 472
Query: 266 ELSKDLKFLTQANE 279
L D K + N+
Sbjct: 473 TLESDNKVIRDGNK 486
>pdb|2ILK| Crystal Structure Of Human Interleukin-10 At 1.6 Angstroms
Resolution
pdb|1J7V|L Chain L, Human Il-10 IL-10r1 Complex
pdb|1INR| Cytokine Synthesis
Length = 160
Score = 29.3 bits (64), Expect = 0.74
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 17/98 (17%)
Query: 1 MGSATSQIESLKKRENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNK 60
M A +Q +K N+L ++L +L+ L + H +F P N+ + Q+K
Sbjct: 77 MPQAENQDPDIKAHVNSLGENLKTLRLRLRRCH----RFLPCENKSKAVEQVK------- 125
Query: 61 ETPTSKNTYKKIQKLAVYKSPLIKDYLYTIKKLFATQK 98
N + K+Q+ +YK+ D + + T K
Sbjct: 126 ------NAFNKLQEKGIYKAMSEFDIFINYIEAYMTMK 157
>pdb|1ILK| Interleukin-10
Length = 151
Score = 29.3 bits (64), Expect = 0.74
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 17/98 (17%)
Query: 1 MGSATSQIESLKKRENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNK 60
M A +Q +K N+L ++L +L+ L + H +F P N+ + Q+K
Sbjct: 68 MPQAENQDPDIKAHVNSLGENLKTLRLRLRRCH----RFLPCENKSKAVEQVK------- 116
Query: 61 ETPTSKNTYKKIQKLAVYKSPLIKDYLYTIKKLFATQK 98
N + K+Q+ +YK+ D + + T K
Sbjct: 117 ------NAFNKLQEKGIYKAMSEFDIFINYIEAYMTMK 148
>pdb|1QS1|A Chain A, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|B Chain B, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|C Chain C, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|D Chain D, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
Length = 462
Score = 28.1 bits (61), Expect = 1.7
Identities = 24/71 (33%), Positives = 40/71 (55%), Gaps = 10/71 (14%)
Query: 119 KDLETDLSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIALDFKSDRHSISQRAFEFFKY 178
K +E L K+ ++ T+ +S VF S S++ N E I K+++ +I+ ++ KY
Sbjct: 2 KRMEGKLFMVSKKLQVVTKTVLLSTVF-SISLLNN-EVI----KAEQLNINSQS----KY 51
Query: 179 MNYQNLSLTDK 189
N QNL +TDK
Sbjct: 52 TNLQNLKITDK 62
>pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex Containing An 8-Oxog
Lesion
Length = 564
Score = 27.7 bits (60), Expect = 2.2
Identities = 35/138 (25%), Positives = 61/138 (43%), Gaps = 16/138 (11%)
Query: 206 VNIARFEMKKIDDSVKNSNPQDNLLDKQVWLNLLEHLKRLEEENYCFAKKRKEFLETRAM 265
V + + K + ++N P+D+L D+ L +HL+ L E AK + + ++
Sbjct: 340 VPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEG--LTAKVFRTY--NASI 395
Query: 266 ELSKDLKFLTQANEN---DLPIYERGQRDKII---------KRCEKSLNFLQKELQCFKT 313
L + LK LT +EN + Y R R I K EKS+ LQ ++ K
Sbjct: 396 TLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKE 455
Query: 314 LLKSASIALENLQNNHQI 331
L A L++ + + ++
Sbjct: 456 QLADARRDLKSAKADAKV 473
>pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomerase I Dna Complex
Length = 563
Score = 27.7 bits (60), Expect = 2.2
Identities = 35/138 (25%), Positives = 61/138 (43%), Gaps = 16/138 (11%)
Query: 206 VNIARFEMKKIDDSVKNSNPQDNLLDKQVWLNLLEHLKRLEEENYCFAKKRKEFLETRAM 265
V + + K + ++N P+D+L D+ L +HL+ L E AK + + ++
Sbjct: 339 VPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEG--LTAKVFRTY--NASI 394
Query: 266 ELSKDLKFLTQANEN---DLPIYERGQRDKII---------KRCEKSLNFLQKELQCFKT 313
L + LK LT +EN + Y R R I K EKS+ LQ ++ K
Sbjct: 395 TLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQIAPPKTFEKSMMNLQTKIDAKKE 454
Query: 314 LLKSASIALENLQNNHQI 331
L A L++ + + ++
Sbjct: 455 QLADARRDLKSAKADAKV 472
>pdb|1LK3|A Chain A, Engineered Human Interleukin-10 Monomer Complexed To 9d7
Fab Fragment
pdb|1LK3|B Chain B, Engineered Human Interleukin-10 Monomer Complexed To 9d7
Fab Fragment
Length = 160
Score = 27.7 bits (60), Expect = 2.2
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 11/98 (11%)
Query: 1 MGSATSQIESLKKRENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNK 60
M A +Q +K N+L ++L +L+ L + H +F P N + K V
Sbjct: 71 MPQAENQDPDIKAHVNSLGENLKTLRLRLRRCH----RFLPCENGGGSGGKSKAVEQV-- 124
Query: 61 ETPTSKNTYKKIQKLAVYKSPLIKDYLYTIKKLFATQK 98
KN + K+Q+ +YK+ D + + T K
Sbjct: 125 -----KNAFNKLQEKGIYKAMSEFDIFINYIEAYMTMK 157
>pdb|1A36|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex
Length = 592
Score = 27.7 bits (60), Expect = 2.2
Identities = 35/138 (25%), Positives = 61/138 (43%), Gaps = 16/138 (11%)
Query: 206 VNIARFEMKKIDDSVKNSNPQDNLLDKQVWLNLLEHLKRLEEENYCFAKKRKEFLETRAM 265
V + + K + ++N P+D+L D+ L +HL+ L E AK + + ++
Sbjct: 368 VPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEG--LTAKVFRTY--NASI 423
Query: 266 ELSKDLKFLTQANEN---DLPIYERGQRDKII---------KRCEKSLNFLQKELQCFKT 313
L + LK LT +EN + Y R R I K EKS+ LQ ++ K
Sbjct: 424 TLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKE 483
Query: 314 LLKSASIALENLQNNHQI 331
L A L++ + + ++
Sbjct: 484 QLADARRDLKSAKADAKV 501
>pdb|1A31|A Chain A, Human Reconstituted Dna Topoisomerase I In Covalent
Complex With A 22 Base Pair Dna Duplex
Length = 538
Score = 27.7 bits (60), Expect = 2.2
Identities = 34/132 (25%), Positives = 56/132 (41%), Gaps = 16/132 (12%)
Query: 206 VNIARFEMKKIDDSVKNSNPQDNLLDKQVWLNLLEHLKRLEEENYCFAKKRKEFLETRAM 265
V + + K + ++N P+D+L D+ L +HL+ L E AK + + ++
Sbjct: 367 VPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEG--LTAKVFRTY--NASI 422
Query: 266 ELSKDLKFLTQANEN---DLPIYERGQRDKII---------KRCEKSLNFLQKELQCFKT 313
L + LK LT +EN + Y R R I K EKS+ LQ ++ K
Sbjct: 423 TLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKE 482
Query: 314 LLKSASIALENL 325
L ++ L
Sbjct: 483 QLAQIALGTSKL 494
>pdb|1VLK| Structure Of Viral Interleukin-10
Length = 145
Score = 27.7 bits (60), Expect = 2.2
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 17/80 (21%)
Query: 1 MGSATSQIESLKKRENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNK 60
M A +Q K N+L ++L +L+ L + H +F P N+ + Q+K
Sbjct: 63 MPQAENQDPEAKDHVNSLGENLKTLRLRLRRCH----RFLPCENKSKAVEQIK------- 111
Query: 61 ETPTSKNTYKKIQKLAVYKS 80
N + K+Q+ +YK+
Sbjct: 112 ------NAFNKLQEKGIYKA 125
>pdb|1A35|A Chain A, Human Reconstituted Dna Topoisomerase I In Non-Covalent
Complex With A 22 Base Pair Dna Duplex
Length = 538
Score = 27.7 bits (60), Expect = 2.2
Identities = 34/132 (25%), Positives = 56/132 (41%), Gaps = 16/132 (12%)
Query: 206 VNIARFEMKKIDDSVKNSNPQDNLLDKQVWLNLLEHLKRLEEENYCFAKKRKEFLETRAM 265
V + + K + ++N P+D+L D+ L +HL+ L E AK + + ++
Sbjct: 367 VPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEG--LTAKVFRTY--NASI 422
Query: 266 ELSKDLKFLTQANEN---DLPIYERGQRDKII---------KRCEKSLNFLQKELQCFKT 313
L + LK LT +EN + Y R R I K EKS+ LQ ++ K
Sbjct: 423 TLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKE 482
Query: 314 LLKSASIALENL 325
L ++ L
Sbjct: 483 QLAQIALGTSKL 494
>pdb|1A9U| The Complex Structure Of The Map Kinase P38SB203580
pdb|1BL6|A Chain A, The Complex Structure Of The Map Kinase P38SB216995
pdb|1BL7|A Chain A, The Complex Structure Of The Map Kinase P38SB220025
Length = 379
Score = 27.3 bits (59), Expect = 2.8
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 32 THWEKEKFTPPINEKELNRQLKEV-RWFNKETPTSKNTYKKIQKLAVYKSPLIKDYLYTI 90
+H +E+ P +ELN+ + EV + +P Y + K+ L +
Sbjct: 18 SHMSQER--PTFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGL----RVAV 71
Query: 91 KKLFATQKKIIDLEKNYKDLRALK 114
KKL + II ++ Y++LR LK
Sbjct: 72 KKLSRPFQSIIHAKRTYRELRLLK 95
>pdb|1IAN| Human P38 Map Kinase Inhibitor Complex
Length = 366
Score = 26.9 bits (58), Expect = 3.7
Identities = 21/83 (25%), Positives = 35/83 (41%), Gaps = 5/83 (6%)
Query: 33 HWEKEKFTPPINEKELNRQLKEV-RWFNKETPTSKNTYKKIQKLAVYKSPLIKDYLYTIK 91
H + P +ELN+ + EV + +P Y + K+ L +K
Sbjct: 4 HHHHSQERPTFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGL----RVAVK 59
Query: 92 KLFATQKKIIDLEKNYKDLRALK 114
KL + II ++ Y++LR LK
Sbjct: 60 KLSRPFQSIIHAKRTYRELRLLK 82
>pdb|1P38| The Structure Of The Map Kinase P38 At 2.1 Angstoms Resolution
pdb|1BMK|A Chain A, The Complex Structure Of The Map Kinase P38SB218655
Length = 379
Score = 26.9 bits (58), Expect = 3.7
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 32 THWEKEKFTPPINEKELNRQLKEV-RWFNKETPTSKNTYKKIQKLAVYKSPLIKDYLYTI 90
+H +E+ P +ELN+ + EV + +P Y + K+ + +
Sbjct: 18 SHMSQER--PTFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKT----GHRVAV 71
Query: 91 KKLFATQKKIIDLEKNYKDLRALK 114
KKL + II ++ Y++LR LK
Sbjct: 72 KKLSRPFQSIIHAKRTYRELRLLK 95
>pdb|1WFC| Structure Of Apo, Unphosphorylated, P38 Mitogen Activated Protein
Kinase P38 (P38 Map Kinase) The Mammalian Homologue Of
The Yeast Hog1 Protein
Length = 366
Score = 26.6 bits (57), Expect = 4.8
Identities = 21/81 (25%), Positives = 35/81 (42%), Gaps = 5/81 (6%)
Query: 35 EKEKFTPPINEKELNRQLKEV-RWFNKETPTSKNTYKKIQKLAVYKSPLIKDYLYTIKKL 93
E + P +ELN+ + EV + +P Y + K+ L +KKL
Sbjct: 6 EMSQERPTFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGL----RVAVKKL 61
Query: 94 FATQKKIIDLEKNYKDLRALK 114
+ II ++ Y++LR LK
Sbjct: 62 SRPFQSIIHAKRTYRELRLLK 82
>pdb|1EZV|A Chain A, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|A Chain A, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|L Chain L, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
Length = 430
Score = 26.6 bits (57), Expect = 4.8
Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 16/131 (12%)
Query: 148 KSIVKNLEKIALDFKSDRHSISQRAFEFFKYMNYQNLSLTDKGNMFLVAKFFKDSALLVN 207
K+I + E A+ K S + +F Y+ TDK FL F + A L++
Sbjct: 47 KNIFLSKENSAVAAKEGLALSSNISRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLS 106
Query: 208 IARFE------MKKIDDSVKNSNPQDNLLDKQVWLNLLEHLKRLEEENYCFAKKRKEFLE 261
+ FE +K++ D N +P +LEHL +N + + LE
Sbjct: 107 SSNFEATKKSVLKQVQDFEDNDHPN----------RVLEHLHSTAFQNTPLSLPTRGTLE 156
Query: 262 TRAMELSKDLK 272
+ + DL+
Sbjct: 157 SLENLVVADLE 167
>pdb|1KB9|A Chain A, Yeast Cytochrome Bc1 Complex
Length = 431
Score = 26.6 bits (57), Expect = 4.8
Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 16/131 (12%)
Query: 148 KSIVKNLEKIALDFKSDRHSISQRAFEFFKYMNYQNLSLTDKGNMFLVAKFFKDSALLVN 207
K+I + E A+ K S + +F Y+ TDK FL F + A L++
Sbjct: 48 KNIFLSKENSAVAAKEGLALSSNISRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLS 107
Query: 208 IARFE------MKKIDDSVKNSNPQDNLLDKQVWLNLLEHLKRLEEENYCFAKKRKEFLE 261
+ FE +K++ D N +P +LEHL +N + + LE
Sbjct: 108 SSNFEATKKSVLKQVQDFEDNDHPN----------RVLEHLHSTAFQNTPLSLPTRGTLE 157
Query: 262 TRAMELSKDLK 272
+ + DL+
Sbjct: 158 SLENLVVADLE 168
>pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp.
pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
Length = 592
Score = 26.2 bits (56), Expect = 6.3
Identities = 19/72 (26%), Positives = 36/72 (49%), Gaps = 9/72 (12%)
Query: 254 KKRKEFLETRAMELSKDLKFLTQANENDLPIYERGQRDKIIKRCEKSLNF-LQKELQCFK 312
+K ++ +E + + LK LT+ END R +++K E++L LQ++ Q K
Sbjct: 511 RKNEQMMEQKERSYQEHLKQLTEKMEND--------RVQLLKEQERTLALKLQEQEQLLK 562
Query: 313 TLLKSASIALEN 324
+ S ++N
Sbjct: 563 EGFQKESRIMKN 574
>pdb|1L9X|B Chain B, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|D Chain D, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|A Chain A, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|C Chain C, Structure Of Gamma-Glutamyl Hydrolase
Length = 315
Score = 26.2 bits (56), Expect = 6.3
Identities = 33/161 (20%), Positives = 62/161 (38%), Gaps = 5/161 (3%)
Query: 179 MNYQNLSLTDKGNMFLVAKFFKDSALLVNIARFEMKKIDDSVKNSNPQDNLLDKQVW-LN 237
+ ++ LSL G L A D A+ +N F ++ + + P + LL V L
Sbjct: 132 LGFEELSLLISGECLLTATDTVDVAMPLN---FTGGQLHSRMFQNFPTELLLSLAVEPLT 188
Query: 238 LLEHLKRLEEENYCFAKKRKEFLETRAMELSKDLKFLTQANENDLPIYERGQRDKIIKRC 297
H L +N+ +K K+F ++F++ P+Y +
Sbjct: 189 ANFHKWSLSVKNFTMNEKLKKFFNVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKAPYE 248
Query: 298 EKSLNFLQKELQCFKTLLKSASIAL-ENLQNNHQITAVTQD 337
K+L+ + KT A + E +NNH + +++
Sbjct: 249 WKNLDGISHAPNAVKTAFYLAEFFVNEARKNNHHFKSESEE 289
>pdb|1AIP|C Chain C, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|G Chain G, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|H Chain H, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|D Chain D, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 196
Score = 26.2 bits (56), Expect = 6.3
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 6 SQIESLKKRENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKE 54
SQ+E +KK A + +K LE W++EK + E+ + K+
Sbjct: 2 SQMELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERGAMKAAKK 50
>pdb|1DI9|A Chain A, The Structure Of P38 Mitogen-Activated Protein Kinase In
Complex With 4-[3-Methylsulfanylanilino]-6,7-
Dimethoxyquinazoline
pdb|1KV1|A Chain A, P38 Map Kinase In Complex With Inhibitor 1
pdb|1KV2|A Chain A, Human P38 Map Kinase In Complex With Birb 796
Length = 360
Score = 26.2 bits (56), Expect = 6.3
Identities = 20/75 (26%), Positives = 33/75 (43%), Gaps = 5/75 (6%)
Query: 41 PPINEKELNRQLKEV-RWFNKETPTSKNTYKKIQKLAVYKSPLIKDYLYTIKKLFATQKK 99
P +ELN+ + EV + +P Y + K+ L +KKL +
Sbjct: 6 PTFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGL----RVAVKKLSRPFQS 61
Query: 100 IIDLEKNYKDLRALK 114
II ++ Y++LR LK
Sbjct: 62 IIHAKRTYRELRLLK 76
>pdb|1JX6|A Chain A, Crystal Structure Of Luxp From Vibrio Harveyi Complexed
With Autoinducer-2
Length = 342
Score = 26.2 bits (56), Expect = 6.3
Identities = 21/78 (26%), Positives = 37/78 (46%), Gaps = 6/78 (7%)
Query: 33 HWEKEKFTPPINE-KELNRQLKE-VRWFNKETPTSKNTYKKIQKLAVYKSPLIKDYLYTI 90
+W ++F E + L L E VR + P SK T + I+ VY + D Y +
Sbjct: 5 YWGYQEFLDEFPEQRNLTNALSEAVR--AQPVPLSKPTQRPIKISVVYPGQQVSD--YWV 60
Query: 91 KKLFATQKKIIDLEKNYK 108
+ + + +K++ L NY+
Sbjct: 61 RNIASFEKRLYKLNINYQ 78
>pdb|1BJ7| Bovine Lipocalin Allergen Bos D 2
Length = 156
Score = 26.2 bits (56), Expect = 6.3
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 16/103 (15%)
Query: 229 LLDKQVWLNLLEHLKRLEEENYCFAKKRKEFLETRAMELSKDLKFLTQANENDLPIY-ER 287
L D+ L L E KR +E Y + EF T +E+ +EN L Y E
Sbjct: 57 LKDQGTCLLLTEVAKR--QEGYVYVL---EFYGTNTLEV-------IHVSENMLVTYVEN 104
Query: 288 GQRDKIIKRCE---KSLNFLQKELQCFKTLLKSASIALENLQN 327
++I K E K +F +EL+ ++ L + EN++N
Sbjct: 105 YDGERITKMTEGLAKGTSFTPEELEKYQQLNSERGVPNENIEN 147
>pdb|1LEW|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The
Docking Site On Its Nuclear Substrate Mef2a
pdb|1LEZ|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The
Docking Site On Its Activator Mkk3b
Length = 360
Score = 25.8 bits (55), Expect = 8.2
Identities = 19/75 (25%), Positives = 33/75 (43%), Gaps = 5/75 (6%)
Query: 41 PPINEKELNRQLKEV-RWFNKETPTSKNTYKKIQKLAVYKSPLIKDYLYTIKKLFATQKK 99
P +ELN+ + EV + +P Y + K+ + +KKL +
Sbjct: 6 PTFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKT----GHRVAVKKLSRPFQS 61
Query: 100 IIDLEKNYKDLRALK 114
II ++ Y++LR LK
Sbjct: 62 IIHAKRTYRELRLLK 76
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 25.8 bits (55), Expect = 8.2
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 332 TAVTQDTQENTNALKNTTQDFNKTTNEPTNPNNNYGMDF 370
T+ T D +NT T F K N+P+N G F
Sbjct: 53 TSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKF 91
>pdb|1FKW| Murine Adenosine Deaminase (D295e)
Length = 349
Score = 25.8 bits (55), Expect = 8.2
Identities = 21/67 (31%), Positives = 31/67 (45%), Gaps = 4/67 (5%)
Query: 55 VRWFNKETPTSKNTYKKIQKLAVYKSPLIKDYLYTIKKLFATQKKIIDLEKNYKDLRALK 114
VR+ N + S NT + ++KS L DY T K + T+++ L N L
Sbjct: 278 VRFKNDKANYSLNTEDPL----IFKSTLDTDYQMTKKDMGFTEEEFKRLNINAAKSSFLP 333
Query: 115 EEFSKDL 121
EE K+L
Sbjct: 334 EEEKKEL 340
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 25.8 bits (55), Expect = 8.2
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 332 TAVTQDTQENTNALKNTTQDFNKTTNEPTNPNNNYGMDF 370
T+ T D +NT T F K N+P+N G F
Sbjct: 53 TSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKF 91
>pdb|1DQI|A Chain A, Crystal Structure Of Superoxide Reductase From P.
Furiosus In The Oxidized State At 1.7 Angstroms
Resolution
pdb|1DQI|B Chain B, Crystal Structure Of Superoxide Reductase From P.
Furiosus In The Oxidized State At 1.7 Angstroms
Resolution
pdb|1DQI|C Chain C, Crystal Structure Of Superoxide Reductase From P.
Furiosus In The Oxidized State At 1.7 Angstroms
Resolution
pdb|1DQI|D Chain D, Crystal Structure Of Superoxide Reductase From P.
Furiosus In The Oxidized State At 1.7 Angstroms
Resolution
pdb|1DQK|A Chain A, Crystal Structure Of Superoxide Reductase In The Reduced
State At 2.0 Angstroms Resolution
pdb|1DQK|B Chain B, Crystal Structure Of Superoxide Reductase In The Reduced
State At 2.0 Angstroms Resolution
pdb|1DQK|C Chain C, Crystal Structure Of Superoxide Reductase In The Reduced
State At 2.0 Angstroms Resolution
pdb|1DQK|D Chain D, Crystal Structure Of Superoxide Reductase In The Reduced
State At 2.0 Angstroms Resolution
pdb|1DO6|A Chain A, Crystal Structure Of Superoxide Reductase In The
Oxidized State At 2.0 Angstrom Resolution
pdb|1DO6|B Chain B, Crystal Structure Of Superoxide Reductase In The
Oxidized State At 2.0 Angstrom Resolution
Length = 124
Score = 25.8 bits (55), Expect = 8.2
Identities = 14/60 (23%), Positives = 27/60 (44%)
Query: 34 WEKEKFTPPINEKELNRQLKEVRWFNKETPTSKNTYKKIQKLAVYKSPLIKDYLYTIKKL 93
W+ EK P I + +K KE P T I+ + +Y P ++++Y + ++
Sbjct: 11 WKGEKHVPVIEYEREGELVKVKVQVGKEIPHPNTTEHHIRYIELYFLPEGENFVYQVGRV 70
>pdb|1JNK| The C-Jun N-Terminal Kinase (Jnk3s) Complexed With Mgamp-Pnp
Length = 422
Score = 25.8 bits (55), Expect = 8.2
Identities = 14/78 (17%), Positives = 36/78 (45%)
Query: 87 LYTIKKLFATQKKIIDLEKNYKDLRALKEEFSKDLETDLSHSKKRFELYTRLKSMSKVFI 146
+ ++ +F QK + + + Y + + + ++ +L H + + LY L + +
Sbjct: 123 IISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHS 182
Query: 147 SKSIVKNLEKIALDFKSD 164
+ I ++L+ + KSD
Sbjct: 183 AGIIHRDLKPSNIVVKSD 200
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 25.8 bits (55), Expect = 8.2
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 332 TAVTQDTQENTNALKNTTQDFNKTTNEPTNPNNNYGMDF 370
T+ T D +NT T F K N+P+N G F
Sbjct: 53 TSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKF 91
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|2CYP| Cytochrome c Peroxidase (E.C.1.11.1.5) (Ferrocytochrome c (Colon)
H2O2 Reductase)
Length = 294
Score = 25.8 bits (55), Expect = 8.2
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 332 TAVTQDTQENTNALKNTTQDFNKTTNEPTNPNNNYGMDF 370
T+ T D +NT T F K N+P+N G F
Sbjct: 53 TSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKF 91
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 25.8 bits (55), Expect = 8.2
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 332 TAVTQDTQENTNALKNTTQDFNKTTNEPTNPNNNYGMDF 370
T+ T D +NT T F K N+P+N G F
Sbjct: 53 TSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKF 91
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.315 0.131 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,955,318
Number of Sequences: 13198
Number of extensions: 77598
Number of successful extensions: 243
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 234
Number of HSP's gapped (non-prelim): 33
length of query: 370
length of database: 2,899,336
effective HSP length: 90
effective length of query: 280
effective length of database: 1,711,516
effective search space: 479224480
effective search space used: 479224480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 55 (25.8 bits)