BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645619|ref|NP_207795.1| hypothetical protein
[Helicobacter pylori 26695]
(273 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1K8A|N Chain N, Co-Crystal Structure Of Carbomycin A Bo... 27 3.3
pdb|1HP7|A Chain A, A 2.1 Angstrom Structure Of An Uncleave... 26 4.3
pdb|1QLP|A Chain A, 2.0 Angstrom Structure Of Intact Alpha-... 26 4.3
pdb|1KCT| Alpha1-Antitrypsin 26 4.3
pdb|1QMB|A Chain A, Cleaved Alpha-1-Antitrypsin Polymer 26 4.3
pdb|1ATU| Uncleaved Alpha-1-Antitrypsin 26 4.3
pdb|8API|A Chain A, Modified Alpha1-Antitrypsin (Modified A... 26 4.3
pdb|1EZX|A Chain A, Crystal Structure Of A Serpin:protease ... 26 4.3
pdb|1PSI| Intact Recombined Alpha1-Antitrypsin Mutant Phe... 26 4.3
pdb|1D5S|A Chain A, Crystal Structure Of Cleaved Antitrypsi... 26 4.3
pdb|1K9X|A Chain A, Structure Of Pyrococcus Furiosus Carbox... 26 5.6
pdb|1HUW| Human Growth Hormone Mutant With Phe 10 Replace... 26 5.6
pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicu... 26 5.6
pdb|1BP3|A Chain A, The Xray Structure Of A Growth Hormone-... 26 5.6
pdb|1A22|A Chain A, Human Growth Hormone Bound To Single Re... 26 5.6
pdb|2IAD|B Chain B, Class Ii Mhc I-Ad In Complex With An In... 26 5.6
pdb|1FFK|I Chain I, Crystal Structure Of The Large Ribosoma... 25 7.3
pdb|1IAO|B Chain B, Class Ii Mhc I-Ad In Complex With Ovalb... 25 7.3
pdb|1GYT|A Chain A, E. Coli Aminopeptidase A (Pepa) >gi|217... 25 7.3
pdb|1HWG|A Chain A, 1:2 Complex Of Human Growth Hormone Wit... 25 9.5
pdb|3HHR|A Chain A, Human Growth Hormone Complexed With Its... 25 9.5
>pdb|1K8A|N Chain N, Co-Crystal Structure Of Carbomycin A Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1K9M|N Chain N, Co-Crystal Structure Of Tylosin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1KD1|N Chain N, Co-Crystal Structure Of Spiramycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M1K|N Chain N, Co-Crystal Structure Of Azithromycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M90|N Chain N, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And
Sparsomycin Bound To The 50s Ribosomal Subunit
pdb|1JJ2|L Chain L, Fully Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution
pdb|1KQS|L Chain L, The Haloarcula Marismortui 50s Complexed With A
Pretranslocational Intermediate In Protein Synthesis
Length = 194
Score = 26.6 bits (57), Expect = 3.3
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 35 AKRYYKEVEKFAKNLTQLTQEEFMRLREPQKQVVIKNIGNMTRLHSKRAMDYIAKHGELV 94
A Y +E K K Q+ + + R++E + + + I TRL R++ Y AK G +V
Sbjct: 4 AYSYIREAWKRPKE-GQIAELMWHRMQEWRNEPAVVRIERPTRLDRARSLGYKAKQGIIV 62
>pdb|1HP7|A Chain A, A 2.1 Angstrom Structure Of An Uncleaved Alpha-1-
Antitrypsin Shows Variability Of The Reactive Center And
Other Loops
Length = 394
Score = 26.2 bits (56), Expect = 4.3
Identities = 20/77 (25%), Positives = 33/77 (41%), Gaps = 2/77 (2%)
Query: 40 KEVEKFAKNLTQLTQEEFMRLREPQKQVVIKNIGNMTRLHSKRAMDYIAKHGELVRDEFF 99
K V+KF +++ +L E + + K I + ++ + + K EL RD F
Sbjct: 125 KLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKGTQGKIVDLVK--ELDRDTVF 182
Query: 100 NEVNYNDIAEQWNEQFE 116
VNY +W FE
Sbjct: 183 ALVNYIFFKGKWERPFE 199
>pdb|1QLP|A Chain A, 2.0 Angstrom Structure Of Intact Alpha-1-Antitrypsin: A
Canonical Template For Active Serpins
Length = 394
Score = 26.2 bits (56), Expect = 4.3
Identities = 20/77 (25%), Positives = 33/77 (41%), Gaps = 2/77 (2%)
Query: 40 KEVEKFAKNLTQLTQEEFMRLREPQKQVVIKNIGNMTRLHSKRAMDYIAKHGELVRDEFF 99
K V+KF +++ +L E + + K I + ++ + + K EL RD F
Sbjct: 125 KLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKGTQGKIVDLVK--ELDRDTVF 182
Query: 100 NEVNYNDIAEQWNEQFE 116
VNY +W FE
Sbjct: 183 ALVNYIFFKGKWERPFE 199
>pdb|1KCT| Alpha1-Antitrypsin
Length = 394
Score = 26.2 bits (56), Expect = 4.3
Identities = 20/77 (25%), Positives = 33/77 (41%), Gaps = 2/77 (2%)
Query: 40 KEVEKFAKNLTQLTQEEFMRLREPQKQVVIKNIGNMTRLHSKRAMDYIAKHGELVRDEFF 99
K V+KF +++ +L E + + K I + ++ + + K EL RD F
Sbjct: 125 KLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKGTQGKIVDLVK--ELDRDTVF 182
Query: 100 NEVNYNDIAEQWNEQFE 116
VNY +W FE
Sbjct: 183 ALVNYIFFKGKWERPFE 199
>pdb|1QMB|A Chain A, Cleaved Alpha-1-Antitrypsin Polymer
Length = 326
Score = 26.2 bits (56), Expect = 4.3
Identities = 20/77 (25%), Positives = 33/77 (41%), Gaps = 2/77 (2%)
Query: 40 KEVEKFAKNLTQLTQEEFMRLREPQKQVVIKNIGNMTRLHSKRAMDYIAKHGELVRDEFF 99
K V+KF +++ +L E + + K I + ++ + + K EL RD F
Sbjct: 100 KLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKGTQGKIVDLVK--ELDRDTVF 157
Query: 100 NEVNYNDIAEQWNEQFE 116
VNY +W FE
Sbjct: 158 ALVNYIFFKGKWERPFE 174
>pdb|1ATU| Uncleaved Alpha-1-Antitrypsin
Length = 374
Score = 26.2 bits (56), Expect = 4.3
Identities = 20/77 (25%), Positives = 33/77 (41%), Gaps = 2/77 (2%)
Query: 40 KEVEKFAKNLTQLTQEEFMRLREPQKQVVIKNIGNMTRLHSKRAMDYIAKHGELVRDEFF 99
K V+KF +++ +L E + + K I + ++ + + K EL RD F
Sbjct: 105 KLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKGTQGKIVDLVK--ELDRDTVF 162
Query: 100 NEVNYNDIAEQWNEQFE 116
VNY +W FE
Sbjct: 163 ALVNYIFFKGKWERPFE 179
>pdb|8API|A Chain A, Modified Alpha1-Antitrypsin (Modified Alpha1-Proteinase
Inhibitor) (Hexagonal)
pdb|7API|A Chain A, Modified Alpha1-Antitrypsin (Modified Alpha1-Proteinase
Inhibitor) (Tetragonal Form 1)
pdb|9API|A Chain A, Modified Alpha1-Antitrypsin (Modified Alpha1-Proteinase
Inhibitor) (Tetragonal Form 2)
Length = 347
Score = 26.2 bits (56), Expect = 4.3
Identities = 20/77 (25%), Positives = 33/77 (41%), Gaps = 2/77 (2%)
Query: 40 KEVEKFAKNLTQLTQEEFMRLREPQKQVVIKNIGNMTRLHSKRAMDYIAKHGELVRDEFF 99
K V+KF +++ +L E + + K I + ++ + + K EL RD F
Sbjct: 114 KLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKGTQGKIVDLVK--ELDRDTVF 171
Query: 100 NEVNYNDIAEQWNEQFE 116
VNY +W FE
Sbjct: 172 ALVNYIFFKGKWERPFE 188
>pdb|1EZX|A Chain A, Crystal Structure Of A Serpin:protease Complex
Length = 335
Score = 26.2 bits (56), Expect = 4.3
Identities = 20/77 (25%), Positives = 33/77 (41%), Gaps = 2/77 (2%)
Query: 40 KEVEKFAKNLTQLTQEEFMRLREPQKQVVIKNIGNMTRLHSKRAMDYIAKHGELVRDEFF 99
K V+KF +++ +L E + + K I + ++ + + K EL RD F
Sbjct: 102 KLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKGTQGKIVDLVK--ELDRDTVF 159
Query: 100 NEVNYNDIAEQWNEQFE 116
VNY +W FE
Sbjct: 160 ALVNYIFFKGKWERPFE 176
>pdb|1PSI| Intact Recombined Alpha1-Antitrypsin Mutant Phe 51 To Leu
Length = 394
Score = 26.2 bits (56), Expect = 4.3
Identities = 20/77 (25%), Positives = 33/77 (41%), Gaps = 2/77 (2%)
Query: 40 KEVEKFAKNLTQLTQEEFMRLREPQKQVVIKNIGNMTRLHSKRAMDYIAKHGELVRDEFF 99
K V+KF +++ +L E + + K I + ++ + + K EL RD F
Sbjct: 125 KLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKGTQGKIVDLVK--ELDRDTVF 182
Query: 100 NEVNYNDIAEQWNEQFE 116
VNY +W FE
Sbjct: 183 ALVNYIFFKGKWERPFE 199
>pdb|1D5S|A Chain A, Crystal Structure Of Cleaved Antitrypsin Polymer
Length = 334
Score = 26.2 bits (56), Expect = 4.3
Identities = 20/77 (25%), Positives = 33/77 (41%), Gaps = 2/77 (2%)
Query: 40 KEVEKFAKNLTQLTQEEFMRLREPQKQVVIKNIGNMTRLHSKRAMDYIAKHGELVRDEFF 99
K V+KF +++ +L E + + K I + ++ + + K EL RD F
Sbjct: 106 KLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKGTQGKIVDLVK--ELDRDTVF 163
Query: 100 NEVNYNDIAEQWNEQFE 116
VNY +W FE
Sbjct: 164 ALVNYIFFKGKWERPFE 180
>pdb|1K9X|A Chain A, Structure Of Pyrococcus Furiosus Carboxypeptidase Apo-Yb
pdb|1K9X|B Chain B, Structure Of Pyrococcus Furiosus Carboxypeptidase Apo-Yb
pdb|1K9X|C Chain C, Structure Of Pyrococcus Furiosus Carboxypeptidase Apo-Yb
pdb|1K9X|D Chain D, Structure Of Pyrococcus Furiosus Carboxypeptidase Apo-Yb
pdb|1KA2|A Chain A, Structure Of Pyrococcus Furiosus Carboxypeptidase Apo-Mg
pdb|1KA4|A Chain A, Structure Of Pyrococcus Furiosus Carboxypeptidase Nat-Pb
Length = 499
Score = 25.8 bits (55), Expect = 5.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 101 EVNYNDIAEQWNEQFEKLLENKSR 124
E+ D+ E WN++ E+LL + R
Sbjct: 377 EIKAKDLPEMWNDEMERLLGIRPR 400
>pdb|1HUW| Human Growth Hormone Mutant With Phe 10 Replaced By Ala, Met 14
Replaced By Trp, His 18 Replaced By Asp, His 21 Replaced
By Asn, Lys 41 Replaced By Ile, Tyr 42 Replaced By His,
Leu 45 Replaced By Trp, Gln 46 Replaced By Trp, Phe 54
Replaced By Pro, Arg 64 Replaced By Lys, Arg 167
Replaced Asn, Asp 171 Replaced By Ser, Glu 174 Replaced
By Ser, Phe 176 Replaced By Tyr, Ile 179 Replaced By Thr
(F10a,
M14w,H18d,H21n,K41i,Y42h,L45w,Q46w,F54p,R64k,R167n,
D171s, E174s,F176y,I179t)
Length = 166
Score = 25.8 bits (55), Expect = 5.6
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 217 LFANSKGELQY-SNTPNIYKAIKDIETELDALENRLETI 254
+FANS L Y ++ N+Y +KD+E + L RLE +
Sbjct: 96 VFANS---LVYGASDSNVYDLLKDLEEGIQTLMGRLEAL 131
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 25.8 bits (55), Expect = 5.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 102 VNYNDIAEQWNEQFEKLLENKSRVKNCALHL 132
VN AE+W +++EK E +K+ HL
Sbjct: 78 VNLELTAEEWKKKYEKEKEKNKALKSVIQHL 108
>pdb|1BP3|A Chain A, The Xray Structure Of A Growth Hormone-Prolactin Receptor
Complex
pdb|1HWH|A Chain A, 1:1 Complex Of Human Growth Hormone Mutant G120r With Its
Soluble Binding Protein
Length = 191
Score = 25.8 bits (55), Expect = 5.6
Identities = 15/37 (40%), Positives = 22/37 (58%), Gaps = 4/37 (10%)
Query: 217 LFANSKGELQY-SNTPNIYKAIKDIETELDALENRLE 252
+FANS L Y ++ N+Y +KD+E + L RLE
Sbjct: 96 VFANS---LVYGASDSNVYDLLKDLEERIQTLMGRLE 129
>pdb|1A22|A Chain A, Human Growth Hormone Bound To Single Receptor
Length = 180
Score = 25.8 bits (55), Expect = 5.6
Identities = 15/37 (40%), Positives = 22/37 (58%), Gaps = 4/37 (10%)
Query: 217 LFANSKGELQY-SNTPNIYKAIKDIETELDALENRLE 252
+FANS L Y ++ N+Y +KD+E + L RLE
Sbjct: 96 VFANS---LVYGASDSNVYDLLKDLEERIQTLMGRLE 129
>pdb|2IAD|B Chain B, Class Ii Mhc I-Ad In Complex With An Influenza
Hemagglutinin Peptide 126-138
Length = 205
Score = 25.8 bits (55), Expect = 5.6
Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 10/99 (10%)
Query: 108 AEQWNEQFEKLLENKSRVKNCALHLVFSIDENCNEKNLKALELSVYQTLTNTLGYD---- 163
AE WN Q E L ++ V H + + + + L+ +++ + T L +
Sbjct: 72 AEYWNSQPEILERTRAEVDTACRHNYEGPETSTSLRRLEQPNVAISLSRTEALNHHNTLV 131
Query: 164 ------YPFIMKLHTHQNNPHAHVIINKTNKITNKQLCF 196
YP +K+ +N V ++ T I N F
Sbjct: 132 CSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRNGDWTF 170
>pdb|1FFK|I Chain I, Crystal Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
Length = 194
Score = 25.4 bits (54), Expect = 7.3
Identities = 19/68 (27%), Positives = 32/68 (46%), Gaps = 7/68 (10%)
Query: 28 LKIQYTYAKRYYKE-VEKFAKNLTQLTQEEFMRLREPQKQVVIKNIGNMTRLHSKRAMDY 86
+K Y Y + +K E + L + RL++ +++ + I TRL RA+ Y
Sbjct: 1 MKSMYAYIREAWKRPYEGYVGELM------WHRLQKWRREPAVVRIPRPTRLDRARALGY 54
Query: 87 IAKHGELV 94
AK G +V
Sbjct: 55 KAKKGIIV 62
>pdb|1IAO|B Chain B, Class Ii Mhc I-Ad In Complex With Ovalbumin Peptide
323-339
Length = 222
Score = 25.4 bits (54), Expect = 7.3
Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 10/99 (10%)
Query: 108 AEQWNEQFEKLLENKSRVKNCALHLVFSIDENCNEKNLKALELSVYQTLTNTLGYD---- 163
AE WN Q E L ++ V H + + + + L+ +++ + T L +
Sbjct: 83 AEYWNSQPEILDRTRAEVDTACRHNYEGPETSTSLRRLEQPNVAISLSRTEALNHHNTLV 142
Query: 164 ------YPFIMKLHTHQNNPHAHVIINKTNKITNKQLCF 196
YP +K+ +N V ++ T I N F
Sbjct: 143 CSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRNGDWTF 181
>pdb|1GYT|A Chain A, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|B Chain B, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|C Chain C, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|D Chain D, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|E Chain E, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|F Chain F, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|G Chain G, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|H Chain H, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|I Chain I, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|J Chain J, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|K Chain K, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|L Chain L, E. Coli Aminopeptidase A (Pepa)
Length = 503
Score = 25.4 bits (54), Expect = 7.3
Identities = 16/72 (22%), Positives = 34/72 (47%)
Query: 65 KQVVIKNIGNMTRLHSKRAMDYIAKHGELVRDEFFNEVNYNDIAEQWNEQFEKLLENKSR 124
KQV+ K I + S A+ ++ + R+ ++ + A++ F++L NKS
Sbjct: 90 KQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSE 149
Query: 125 VKNCALHLVFSI 136
+ +VF++
Sbjct: 150 PRRPLRKMVFNV 161
>pdb|1HWG|A Chain A, 1:2 Complex Of Human Growth Hormone With Its Soluble
Binding Protein
Length = 191
Score = 25.0 bits (53), Expect = 9.5
Identities = 15/37 (40%), Positives = 22/37 (58%), Gaps = 4/37 (10%)
Query: 217 LFANSKGELQY-SNTPNIYKAIKDIETELDALENRLE 252
+FANS L Y ++ N+Y +KD+E + L RLE
Sbjct: 96 VFANS---LVYGASDSNVYDLLKDLEEGIQTLMGRLE 129
>pdb|3HHR|A Chain A, Human Growth Hormone Complexed With Its Receptor
(Extracellular Domain)
Length = 190
Score = 25.0 bits (53), Expect = 9.5
Identities = 15/37 (40%), Positives = 22/37 (58%), Gaps = 4/37 (10%)
Query: 217 LFANSKGELQY-SNTPNIYKAIKDIETELDALENRLE 252
+FANS L Y ++ N+Y +KD+E + L RLE
Sbjct: 96 VFANS---LVYGASDSNVYDLLKDLEEGIQTLMGRLE 129
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.134 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,550,187
Number of Sequences: 13198
Number of extensions: 62795
Number of successful extensions: 228
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 223
Number of HSP's gapped (non-prelim): 21
length of query: 273
length of database: 2,899,336
effective HSP length: 87
effective length of query: 186
effective length of database: 1,751,110
effective search space: 325706460
effective search space used: 325706460
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)