BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645620|ref|NP_207796.1| hypothetical protein
[Helicobacter pylori 26695]
(104 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1AF5| Group I Mobile Intron Endonuclease 28 0.12
pdb|1NOL| Oxygenated Hemocyanin (Subunit Type Ii) >gi|494... 27 0.26
pdb|1EAZ|A Chain A, Crystal Structure Of The Phosphoinosito... 27 0.26
pdb|1LL1| Hydroxo Bridge Met Form Hemocyanin From Limulus 27 0.26
pdb|1OXY| Hemocyanin Subunit Ii Complexed With Oxygen 27 0.26
pdb|1M1U|A Chain A, An Isoleucine-Based Allosteric Switch C... 27 0.34
pdb|1BHQ|1 Chain 1, Mac-1 I Domain Cadmium Complex >gi|3891... 27 0.34
pdb|1G9Z|A Chain A, Laglidadg Homing Endonuclease I-Crei D... 27 0.34
pdb|1JLM| I-Domain From Integrin Cr3, Mn2+ Bound 27 0.34
pdb|1IDO| I-Domain From Integrin Cr3, Mg2+ Bound 27 0.34
pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And F... 24 2.2
pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Co... 24 2.9
pdb|1J75|A Chain A, Crystal Structure Of The Dna-Binding Do... 23 4.9
pdb|1HV2|A Chain A, Solution Structure Of Yeast Elongin C I... 23 4.9
pdb|2NEF| Hiv-1 Nef (Regulatory Factor), Nmr, 40 Structures 23 4.9
pdb|1HY1|C Chain C, Crystal Structure Of Wild Type Duck Del... 23 4.9
pdb|1E19|A Chain A, Structure Of The Carbamate Kinase-Like ... 23 6.4
pdb|3BTA|A Chain A, Crystal Structure Of Botulinum Neurotox... 22 8.4
pdb|1AG8|A Chain A, Aldehyde Dehydrogenase From Bovine Mito... 22 8.4
>pdb|1AF5| Group I Mobile Intron Endonuclease
Length = 126
Score = 28.5 bits (62), Expect = 0.12
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 5 ITDYSQYNEKQLHNFLNSIEKQLLKAERDKNKAIKKIQECELQ 47
++DY K LHNFL ++ L ++ N +K I++ L+
Sbjct: 70 VSDYILSEIKPLHNFLTQLQPFLKLKQKQANLVLKIIEQLPLE 112
>pdb|1NOL| Oxygenated Hemocyanin (Subunit Type Ii)
pdb|1LLA| Hemocyanin (Subunit Type Ii)
Length = 628
Score = 27.3 bits (59), Expect = 0.26
Identities = 10/14 (71%), Positives = 13/14 (92%)
Query: 86 GDFNDFLQIAKQER 99
GDFNDF++IAK+ R
Sbjct: 68 GDFNDFIEIAKEAR 81
>pdb|1EAZ|A Chain A, Crystal Structure Of The Phosphoinositol
(3,4)-Bisphosphate Binding Ph Domain Of Tapp1 From
Human
Length = 125
Score = 27.3 bits (59), Expect = 0.26
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 1 MSNIITDYSQYNEKQLHNFLNSIEKQLLKAERDKNKAIKKIQECELQERMIRQVL 55
M N Y Q +E + F + +EK+ L+ K + K+QEC+ + M+R L
Sbjct: 27 MKNWKRRYFQLDENTIGYFKSELEKEPLRVI--PLKEVHKVQECKQSDIMMRDNL 79
>pdb|1LL1| Hydroxo Bridge Met Form Hemocyanin From Limulus
Length = 590
Score = 27.3 bits (59), Expect = 0.26
Identities = 10/14 (71%), Positives = 13/14 (92%)
Query: 86 GDFNDFLQIAKQER 99
GDFNDF++IAK+ R
Sbjct: 58 GDFNDFIEIAKEAR 71
>pdb|1OXY| Hemocyanin Subunit Ii Complexed With Oxygen
Length = 628
Score = 27.3 bits (59), Expect = 0.26
Identities = 10/14 (71%), Positives = 13/14 (92%)
Query: 86 GDFNDFLQIAKQER 99
GDFNDF++IAK+ R
Sbjct: 68 GDFNDFIEIAKEAR 81
>pdb|1M1U|A Chain A, An Isoleucine-Based Allosteric Switch Controls Affinity
And Shape Shifting In Integrin Cd11b A-Domain
Length = 195
Score = 26.9 bits (58), Expect = 0.34
Identities = 17/55 (30%), Positives = 26/55 (46%)
Query: 47 QERMIRQVLAQKHSQEKEPTPSLLNTIASKDDPEYDVSFGDFNDFLQIAKQERER 101
+E +IR V+ + E + LNTIASK ++ +F I Q RE+
Sbjct: 141 REGVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALKTIQNQLREK 195
>pdb|1BHQ|1 Chain 1, Mac-1 I Domain Cadmium Complex
pdb|1BHQ|2 Chain 2, Mac-1 I Domain Cadmium Complex
pdb|1BHO|1 Chain 1, Mac-1 I Domain Magnesium Complex
pdb|1BHO|2 Chain 2, Mac-1 I Domain Magnesium Complex
pdb|1IDN|1 Chain 1, Mac-1 I Domain Metal Free
pdb|1IDN|2 Chain 2, Mac-1 I Domain Metal Free
Length = 190
Score = 26.9 bits (58), Expect = 0.34
Identities = 17/55 (30%), Positives = 26/55 (46%)
Query: 47 QERMIRQVLAQKHSQEKEPTPSLLNTIASKDDPEYDVSFGDFNDFLQIAKQERER 101
+E +IR V+ + E + LNTIASK ++ +F I Q RE+
Sbjct: 130 REGVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALKTIQNQLREK 184
>pdb|1G9Z|A Chain A, Laglidadg Homing Endonuclease I-Crei DNA PRODUCT COMPLEX
With Magnesium
pdb|1G9Z|B Chain B, Laglidadg Homing Endonuclease I-Crei DNA PRODUCT COMPLEX
With Magnesium
pdb|1G9Y|A Chain A, Homing Endonuclease I-Crei DNA SUBSTRATE COMPLEX WITH
Calcium
pdb|1G9Y|B Chain B, Homing Endonuclease I-Crei DNA SUBSTRATE COMPLEX WITH
Calcium
pdb|1BP7|A Chain A, Group I Mobile Intron Endonuclease I-Crei Complexed With
Homing Site Dna
pdb|1BP7|B Chain B, Group I Mobile Intron Endonuclease I-Crei Complexed With
Homing Site Dna
pdb|1BP7|C Chain C, Group I Mobile Intron Endonuclease I-Crei Complexed With
Homing Site Dna
pdb|1BP7|D Chain D, Group I Mobile Intron Endonuclease I-Crei Complexed With
Homing Site Dna
Length = 152
Score = 26.9 bits (58), Expect = 0.34
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 5 ITDYSQYNEKQLHNFLNSIEKQLLKAERDKNKAIKKIQE 43
++DY K LHNFL ++ L ++ N +K I++
Sbjct: 72 VSDYILSEIKPLHNFLTQLQPFLKLKQKQANLVLKIIEQ 110
>pdb|1JLM| I-Domain From Integrin Cr3, Mn2+ Bound
Length = 192
Score = 26.9 bits (58), Expect = 0.34
Identities = 17/55 (30%), Positives = 26/55 (46%)
Query: 47 QERMIRQVLAQKHSQEKEPTPSLLNTIASKDDPEYDVSFGDFNDFLQIAKQERER 101
+E +IR V+ + E + LNTIASK ++ +F I Q RE+
Sbjct: 135 REGVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALKTIQNQLREK 189
>pdb|1IDO| I-Domain From Integrin Cr3, Mg2+ Bound
Length = 192
Score = 26.9 bits (58), Expect = 0.34
Identities = 17/55 (30%), Positives = 26/55 (46%)
Query: 47 QERMIRQVLAQKHSQEKEPTPSLLNTIASKDDPEYDVSFGDFNDFLQIAKQERER 101
+E +IR V+ + E + LNTIASK ++ +F I Q RE+
Sbjct: 138 REGVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALKTIQNQLREK 192
>pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And First Long Helix Of
Moesin
Length = 346
Score = 24.3 bits (51), Expect = 2.2
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 21 NSIEKQLLKAERDKNKAIKKIQECELQERMIRQVLAQKHSQEKE 64
++IE Q +KA+ + K K+++ L+ ++ +A+K ++ E
Sbjct: 298 DTIEVQQMKAQAREEKHQKQMERAMLENEKKKREMAEKEKEKIE 341
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 23.9 bits (50), Expect = 2.9
Identities = 12/39 (30%), Positives = 22/39 (55%), Gaps = 3/39 (7%)
Query: 22 SIEKQLLKAERDKNKAIKKIQECELQERMIRQVLAQKHS 60
+IEKQL + +RDK + + + E R + + LA + +
Sbjct: 106 TIEKQLARTQRDKKRPLLHV---ETPPREVLEALANERN 141
>pdb|1J75|A Chain A, Crystal Structure Of The Dna-Binding Domain Zalpha Of
Dlm-1 Bound To Z-Dna
Length = 67
Score = 23.1 bits (48), Expect = 4.9
Identities = 9/50 (18%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 21 NSIEKQLLKAERDKNKAIK---KIQECELQERMIRQVLAQKHSQEKEPTP 67
+++E+++L+ D +K +++C++ ++ + QVL + +++ +P
Sbjct: 9 DNLEQKILQVLSDDGGPVKIGQLVKKCQVPKKTLNQVLYRLKKEDRVSSP 58
>pdb|1HV2|A Chain A, Solution Structure Of Yeast Elongin C In Complex With A
Von Hippel-Lindau Peptide
Length = 99
Score = 23.1 bits (48), Expect = 4.9
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 72 TIASKDDPEYDVS 84
T+ SKDD EY++S
Sbjct: 7 TLVSKDDKEYEIS 19
>pdb|2NEF| Hiv-1 Nef (Regulatory Factor), Nmr, 40 Structures
Length = 136
Score = 23.1 bits (48), Expect = 4.9
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 74 ASKDDPEYDVSFGDFNDFLQIAKQERERH 102
A+KDDPE +V F+ L RE H
Sbjct: 101 ANKDDPEREVLEWRFDSRLAFHHMARELH 129
>pdb|1HY1|C Chain C, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|D Chain D, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|A Chain A, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|B Chain B, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
Length = 468
Score = 23.1 bits (48), Expect = 4.9
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 15 QLHNFLNSIEKQLLKAERDKNKAIKKIQECELQERMIRQ 53
Q+ NF+NS+E+ A K+ +I+ +L+E M +Q
Sbjct: 428 QVFNFVNSVEQYTALAGTAKSSVTTQIE--QLRELMKKQ 464
>pdb|1E19|A Chain A, Structure Of The Carbamate Kinase-Like Carbamoyl Phosphate
Synthetase From The Hyperthermophilic Archaeon
Pyrococcus Furiosus Bound To Adp
pdb|1E19|B Chain B, Structure Of The Carbamate Kinase-Like Carbamoyl Phosphate
Synthetase From The Hyperthermophilic Archaeon
Pyrococcus Furiosus Bound To Adp
Length = 314
Score = 22.7 bits (47), Expect = 6.4
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 50 MIRQVLA---QKHSQEKEPTPSLLNTIASKDDPEY 81
MI+Q L +K EK+ + TI K+DP +
Sbjct: 92 MIQQALKNELRKRGMEKKVVTIITQTIVDKNDPAF 126
>pdb|3BTA|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype A
Length = 1295
Score = 22.3 bits (46), Expect = 8.4
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 8 YSQYNEKQLHNFLNSIEKQLLKAERDKNKAIKKIQE 43
Y+QY E++ +N +I+ K NKA+ I +
Sbjct: 750 YNQYTEEEKNNINFNIDDLSSKLNESINKAMININK 785
>pdb|1AG8|A Chain A, Aldehyde Dehydrogenase From Bovine Mitochondria
pdb|1AG8|B Chain B, Aldehyde Dehydrogenase From Bovine Mitochondria
pdb|1AG8|C Chain C, Aldehyde Dehydrogenase From Bovine Mitochondria
pdb|1AG8|D Chain D, Aldehyde Dehydrogenase From Bovine Mitochondria
pdb|1A4Z|A Chain A, Aldehyde Dehydrogenase From Bovine Mitochondria Complex
With Nad (Reduced) And Samarium (Iii)
pdb|1A4Z|B Chain B, Aldehyde Dehydrogenase From Bovine Mitochondria Complex
With Nad (Reduced) And Samarium (Iii)
pdb|1A4Z|C Chain C, Aldehyde Dehydrogenase From Bovine Mitochondria Complex
With Nad (Reduced) And Samarium (Iii)
pdb|1A4Z|D Chain D, Aldehyde Dehydrogenase From Bovine Mitochondria Complex
With Nad (Reduced) And Samarium (Iii)
Length = 499
Score = 22.3 bits (46), Expect = 8.4
Identities = 16/56 (28%), Positives = 26/56 (45%), Gaps = 2/56 (3%)
Query: 45 ELQERMIRQVLAQKHSQEKEPTPSLLNTIASKDDPEY--DVSFGDFNDFLQIAKQE 98
++ E ++VL S ++E L A+ D + FGD D + IAK+E
Sbjct: 343 QVDETQFKKVLGYIKSGKEEGLKLLCGGGAAADRGYFIQPTVFGDLQDGMTIAKEE 398
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.312 0.129 0.345
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 551,158
Number of Sequences: 13198
Number of extensions: 17883
Number of successful extensions: 46
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 32
Number of HSP's gapped (non-prelim): 19
length of query: 104
length of database: 2,899,336
effective HSP length: 80
effective length of query: 24
effective length of database: 1,843,496
effective search space: 44243904
effective search space used: 44243904
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 46 (22.3 bits)