BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645621|ref|NP_207797.1| conjugal transfer protein
(traG) [Helicobacter pylori 26695]
(177 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1D2P|A Chain A, Crystal Structure Of Two B Repeat Units... 37 0.001
pdb|1D2O|A Chain A, Crystal Structure Of A Single B Repeat ... 33 0.024
pdb|1GKI|A Chain A, Plasmid Coupling Protein Trwb In Comple... 32 0.032
pdb|1GL6|A Chain A, Plasmid Coupling Protein Trwb In Comple... 32 0.032
pdb|487D|K Chain K, Seven Ribosomal Proteins Fitted To A Cr... 28 0.78
pdb|1DM5|A Chain A, Annexin Xii E105k Homohexamer Crystal S... 25 5.1
pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (R... 25 5.1
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex >gi|14278207|pdb|1... 25 5.1
pdb|1AEI|A Chain A, Crystal Structure Of The Annexin Xii He... 25 5.1
pdb|1BSX|A Chain A, Structure And Specificity Of Nuclear Re... 24 8.6
>pdb|1D2P|A Chain A, Crystal Structure Of Two B Repeat Units (B1b2) Of The
Collagen Binding Protein (Cna) Of Staphylococcus Aureus
Length = 373
Score = 37.4 bits (85), Expect = 0.001
Identities = 29/97 (29%), Positives = 48/97 (48%), Gaps = 12/97 (12%)
Query: 78 MDDLEYAKQVSEEVGKMTR----KTRSHSTEKGQLITGG------TSSIGKEAWDLLSAQ 127
+D+ +QV V ++T+ T + + G LIT TSSIG++ WD Q
Sbjct: 145 LDEKAKGQQVKYTVEELTKVKGYTTHVDNNDMGNLITTNKYTPETTSSIGEKVWDDKDNQ 204
Query: 128 DIMNIDKDEVIVLVSGHKAKPLKL--KANYYFKNKEL 162
D +K V +L +G K K L + + N+ ++ K+L
Sbjct: 205 DGKRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDL 241
Score = 32.7 bits (73), Expect = 0.024
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 113 TSSIGKEAWDLLSAQDIMNIDKDEVIVLVSGHKAKPLKL--KANYYFKNKEL 162
TSSIG++ WD QD +K V +L +G K K L + + N+ ++ K+L
Sbjct: 3 TSSIGEKVWDDKDNQDGKRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDL 54
>pdb|1D2O|A Chain A, Crystal Structure Of A Single B Repeat Unit (B1) Of
Collagen Binding Surface Protein (Cna) Of Staphylococcus
Aureus.
pdb|1D2O|B Chain B, Crystal Structure Of A Single B Repeat Unit (B1) Of
Collagen Binding Surface Protein (Cna) Of Staphylococcus
Aureus
Length = 187
Score = 32.7 bits (73), Expect = 0.024
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 113 TSSIGKEAWDLLSAQDIMNIDKDEVIVLVSGHKAKPLKL--KANYYFKNKEL 162
TSSIG++ WD QD +K V +L +G K K L + + N+ ++ K+L
Sbjct: 3 TSSIGEKVWDDKDNQDGKRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDL 54
>pdb|1GKI|A Chain A, Plasmid Coupling Protein Trwb In Complex With Adp And
Mg2+.
pdb|1GKI|B Chain B, Plasmid Coupling Protein Trwb In Complex With Adp And
Mg2+.
pdb|1GKI|D Chain D, Plasmid Coupling Protein Trwb In Complex With Adp And
Mg2+.
pdb|1GKI|E Chain E, Plasmid Coupling Protein Trwb In Complex With Adp And
Mg2+.
pdb|1GKI|F Chain F, Plasmid Coupling Protein Trwb In Complex With Adp And
Mg2+.
pdb|1GKI|G Chain G, Plasmid Coupling Protein Trwb In Complex With Adp And
Mg2+.
pdb|1GL7|A Chain A, Plasmid Coupling Protein Trwb In Complex With The
Non-Hydrolisable Atp-Analogue Adpnp.
pdb|1GL7|B Chain B, Plasmid Coupling Protein Trwb In Complex With The
Non-Hydrolisable Atp-Analogue Adpnp.
pdb|1GL7|D Chain D, Plasmid Coupling Protein Trwb In Complex With The
Non-Hydrolisable Atp-Analogue Adpnp.
pdb|1GL7|E Chain E, Plasmid Coupling Protein Trwb In Complex With The
Non-Hydrolisable Atp-Analogue Adpnp.
pdb|1GL7|F Chain F, Plasmid Coupling Protein Trwb In Complex With The
Non-Hydrolisable Atp-Analogue Adpnp.
pdb|1GL7|G Chain G, Plasmid Coupling Protein Trwb In Complex With The
Non-Hydrolisable Atp-Analogue Adpnp.
pdb|1E9S|A Chain A, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Unbound Monoclinic Form.
pdb|1E9S|F Chain F, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Unbound Monoclinic Form.
pdb|1E9S|G Chain G, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Unbound Monoclinic Form.
pdb|1E9S|L Chain L, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Unbound Monoclinic Form.
pdb|1E9S|E Chain E, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Unbound Monoclinic Form.
pdb|1E9S|M Chain M, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Unbound Monoclinic Form.
pdb|1E9S|H Chain H, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Unbound Monoclinic Form.
pdb|1E9S|I Chain I, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Unbound Monoclinic Form.
pdb|1E9S|J Chain J, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Unbound Monoclinic Form.
pdb|1E9R|B Chain B, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Trigonal Form In Complex With Sulphate.
pdb|1E9S|B Chain B, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Unbound Monoclinic Form.
pdb|1E9S|K Chain K, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Unbound Monoclinic Form.
pdb|1E9R|A Chain A, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Trigonal Form In Complex With Sulphate.
pdb|1E9R|E Chain E, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Trigonal Form In Complex With Sulphate.
pdb|1E9R|G Chain G, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Trigonal Form In Complex With Sulphate.
pdb|1E9S|D Chain D, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Unbound Monoclinic Form.
pdb|1E9R|F Chain F, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Trigonal Form In Complex With Sulphate.
pdb|1E9R|D Chain D, Bacterial Conjugative Coupling Protein Trwbdeltan70.
Trigonal Form In Complex With Sulphate
Length = 437
Score = 32.3 bits (72), Expect = 0.032
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 1 MVSLKESKKFEERVYLFLDEFVRFGKLPFLLEMPALSRSYGVVLIFITQSNALIEKYYGR 60
++SL E K R++LF+DE KL L + R G+ ++ QS + ++ YG
Sbjct: 270 ILSLPEEPK--RRLWLFIDELASLEKLASLADALTKGRKAGLRVVAGLQSTSQLDDVYGV 327
Query: 61 EDARIVNST 69
++A+ + ++
Sbjct: 328 KEAQTLRAS 336
>pdb|1GL6|A Chain A, Plasmid Coupling Protein Trwb In Complex With The
Non-Hydrolysable Gtp Analogue Gdpnp
pdb|1GL6|B Chain B, Plasmid Coupling Protein Trwb In Complex With The
Non-Hydrolysable Gtp Analogue Gdpnp
pdb|1GL6|D Chain D, Plasmid Coupling Protein Trwb In Complex With The
Non-Hydrolysable Gtp Analogue Gdpnp
pdb|1GL6|E Chain E, Plasmid Coupling Protein Trwb In Complex With The
Non-Hydrolysable Gtp Analogue Gdpnp
pdb|1GL6|F Chain F, Plasmid Coupling Protein Trwb In Complex With The
Non-Hydrolysable Gtp Analogue Gdpnp
pdb|1GL6|G Chain G, Plasmid Coupling Protein Trwb In Complex With The
Non-Hydrolysable Gtp Analogue Gdpnp
Length = 436
Score = 32.3 bits (72), Expect = 0.032
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 1 MVSLKESKKFEERVYLFLDEFVRFGKLPFLLEMPALSRSYGVVLIFITQSNALIEKYYGR 60
++SL E K R++LF+DE KL L + R G+ ++ QS + ++ YG
Sbjct: 269 ILSLPEEPK--RRLWLFIDELASLEKLASLADALTKGRKAGLRVVAGLQSTSQLDDVYGV 326
Query: 61 EDARIVNST 69
++A+ + ++
Sbjct: 327 KEAQTLRAS 335
>pdb|487D|K Chain K, Seven Ribosomal Proteins Fitted To A Cryo-Electron
Microscopic Map Of The Large 50s Subunit At 7.5
Angstroms Resolution
pdb|1DIV| Ribosomal Protein L9
pdb|1GIY|K Chain K, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1giy, Contains The 50s Ribosome Subunit. The
30s Ribosome Subunit, Three Trna, And Mrna Molecules Are
In The File 1gix
Length = 149
Score = 27.7 bits (60), Expect = 0.78
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 79 DDLEYAKQVSEEVGKMTRKTRSHSTEKGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEV- 137
++L AK++ E++ K+T + + E G+L TS K+ + L AQ + +DK ++
Sbjct: 60 EELANAKKLKEQLEKLTVTIPAKAGEGGRLFGSITS---KQIAESLQAQHGLKLDKRKIE 116
Query: 138 ---IVLVSGHKAKPLKL 151
+ G+ P+KL
Sbjct: 117 LADAIRALGYTNVPVKL 133
>pdb|1DM5|A Chain A, Annexin Xii E105k Homohexamer Crystal Structure
pdb|1DM5|B Chain B, Annexin Xii E105k Homohexamer Crystal Structure
pdb|1DM5|C Chain C, Annexin Xii E105k Homohexamer Crystal Structure
pdb|1DM5|D Chain D, Annexin Xii E105k Homohexamer Crystal Structure
pdb|1DM5|E Chain E, Annexin Xii E105k Homohexamer Crystal Structure
pdb|1DM5|F Chain F, Annexin Xii E105k Homohexamer Crystal Structure
Length = 315
Score = 25.0 bits (53), Expect = 5.1
Identities = 17/49 (34%), Positives = 28/49 (56%), Gaps = 2/49 (4%)
Query: 48 TQSNALIEKYYGREDARIVNSTVAYKIIFKMDDLEYAKQVSEEVGKMTR 96
T NALI+ + +A+I A+K+++K +DLE + +SE G R
Sbjct: 102 TDKNALIDILCTQSNAQIHAIKAAFKLLYK-EDLE-KEIISETSGNFQR 148
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 25.0 bits (53), Expect = 5.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 99 RSHSTEKGQLITGGTSSIGK 118
RSHSTE G ++T G +G+
Sbjct: 20 RSHSTEPGLVLTLGQGDVGQ 39
>pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
Length = 402
Score = 25.0 bits (53), Expect = 5.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 99 RSHSTEKGQLITGGTSSIGK 118
RSHSTE G ++T G +G+
Sbjct: 9 RSHSTEPGLVLTLGQGDVGQ 28
>pdb|1AEI|A Chain A, Crystal Structure Of The Annexin Xii Hexamer
pdb|1AEI|B Chain B, Crystal Structure Of The Annexin Xii Hexamer
pdb|1AEI|C Chain C, Crystal Structure Of The Annexin Xii Hexamer
pdb|1AEI|D Chain D, Crystal Structure Of The Annexin Xii Hexamer
pdb|1AEI|E Chain E, Crystal Structure Of The Annexin Xii Hexamer
pdb|1AEI|F Chain F, Crystal Structure Of The Annexin Xii Hexamer
Length = 315
Score = 25.0 bits (53), Expect = 5.1
Identities = 17/49 (34%), Positives = 28/49 (56%), Gaps = 2/49 (4%)
Query: 48 TQSNALIEKYYGREDARIVNSTVAYKIIFKMDDLEYAKQVSEEVGKMTR 96
T NALI+ + +A+I A+K+++K +DLE + +SE G R
Sbjct: 102 TDENALIDILCTQSNAQIHAIKAAFKLLYK-EDLE-KEIISETSGNFQR 148
>pdb|1BSX|A Chain A, Structure And Specificity Of Nuclear Receptor-Coactivator
Interactions
pdb|1BSX|B Chain B, Structure And Specificity Of Nuclear Receptor-Coactivator
Interactions
Length = 260
Score = 24.3 bits (51), Expect = 8.6
Identities = 12/36 (33%), Positives = 18/36 (49%)
Query: 105 KGQLITGGTSSIGKEAWDLLSAQDIMNIDKDEVIVL 140
+GQL GG + +DL + N+D EV +L
Sbjct: 137 RGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALL 172
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.135 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 974,286
Number of Sequences: 13198
Number of extensions: 35733
Number of successful extensions: 105
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 97
Number of HSP's gapped (non-prelim): 11
length of query: 177
length of database: 2,899,336
effective HSP length: 82
effective length of query: 95
effective length of database: 1,817,100
effective search space: 172624500
effective search space used: 172624500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)