BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645623|ref|NP_207799.1| site-specific recombinase
[Helicobacter pylori 26695]
(186 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1A0P| Site-Specific Recombinase, Xerd 43 3e-05
pdb|1JYK|A Chain A, Catalytic Mechanism Of Ctp:phosphocholi... 33 0.015
pdb|1JYL|A Chain A, Catalytic Mechanism Of Ctp:phosphocholi... 33 0.020
pdb|1GZ4|A Chain A, Molecular Mechanism Of The Regulation O... 29 0.38
pdb|1QR6|A Chain A, Human Mitochondrial Nad(P)-Dependent Ma... 29 0.38
pdb|1DO8|A Chain A, Crystal Structure Of A Closed Form Of H... 29 0.38
pdb|1EFK|A Chain A, Structure Of Human Malic Enzyme In Comp... 29 0.38
pdb|1GNL|A Chain A, Hybrid Cluster Protein From Desulfovibr... 27 1.9
pdb|1GN9|A Chain A, Hybrid Cluster Protein From Desulfovibr... 27 1.9
pdb|1DQU|A Chain A, Crystal Structure Of The Isocitrate Lya... 25 4.2
pdb|1FVR|A Chain A, Tie2 Kinase Domain >gi|15988251|pdb|1FV... 25 7.1
>pdb|1A0P| Site-Specific Recombinase, Xerd
Length = 290
Score = 42.7 bits (99), Expect = 3e-05
Identities = 35/116 (30%), Positives = 57/116 (48%), Gaps = 6/116 (5%)
Query: 39 KINSMAKYVMYIRQFFDYLDRTKHYEFYFSLKNIAFAKHKDNLPKHLNSKDLKSFIYTLI 98
K S A+ + +R+ F YL R K E S ++A K LPK L+ ++ + +
Sbjct: 66 KATSSARLLSAVRRLFQYLYREKFREDDPSA-HLASPKLPQRLPKDLSEAQVERLLQAPL 124
Query: 99 NYRTRSSYEKRNKCILLLIILGGLRKSEVFNLELRNIVLEKEHYILLIKGKNNKER 154
E R+K +L ++ GLR SE+ L + +I L + ++ + GK NKER
Sbjct: 125 ---IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQG--VVRVIGKGNKER 175
>pdb|1JYK|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
Length = 254
Score = 33.5 bits (75), Expect = 0.015
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 17 KRLRLLNEEMLVNFLFELAKQRKINSMAKYVMYIRQFFDYLDRTKHYEFYFSLKNIAFAK 76
K L +N++ L+ + E K++ IN + V Y+++ FDYL F N +A
Sbjct: 48 KALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQFDYLKEKYGVRLVF---NDKYAD 104
Query: 77 HKDNLPKHLNSKDL-KSFIYTLINYRTRSSY 106
+ + +L ++L S++ NY ++ +
Sbjct: 105 YNNFYSLYLVKEELANSYVIDADNYLFKNXF 135
>pdb|1JYL|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|B Chain B, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|C Chain C, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|D Chain D, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
Length = 254
Score = 33.1 bits (74), Expect = 0.020
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 17 KRLRLLNEEMLVNFLFELAKQRKINSMAKYVMYIRQFFDYLDRTKHYEFYFSLKNIAFAK 76
K L +N++ L+ + E K++ IN + V Y+++ FDYL F N +A
Sbjct: 48 KALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQFDYLKEKYGVRLVF---NDKYAD 104
Query: 77 HKDNLPKHLNSKDL-KSFIYTLINYRTRSSY 106
+ + +L ++L S++ NY ++ +
Sbjct: 105 YNNFYSLYLVKEELANSYVIDADNYLFKNMF 135
>pdb|1GZ4|A Chain A, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|B Chain B, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|C Chain C, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|D Chain D, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 551
Score = 28.9 bits (63), Expect = 0.38
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 129 NLELRNIVLEKEHYILLIKGKNNKERKAFIKIAQTDIDTLAPLI 172
NL+ LEK YI I+ +N K F +I Q DI++L P++
Sbjct: 49 NLKKXTSPLEKYIYIXGIQERNEK---LFYRILQDDIESLXPIV 89
>pdb|1QR6|A Chain A, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
pdb|1QR6|B Chain B, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
Length = 584
Score = 28.9 bits (63), Expect = 0.38
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 129 NLELRNIVLEKEHYILLIKGKNNKERKAFIKIAQTDIDTLAPLI 172
NL+ LEK YI I+ +N K F +I Q DI++L P++
Sbjct: 71 NLKKXTSPLEKYIYIXGIQERNEK---LFYRILQDDIESLXPIV 111
>pdb|1DO8|A Chain A, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|B Chain B, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|C Chain C, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|D Chain D, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
Length = 564
Score = 28.9 bits (63), Expect = 0.38
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 129 NLELRNIVLEKEHYILLIKGKNNKERKAFIKIAQTDIDTLAPLI 172
NL+ LEK YI I+ +N K F +I Q DI++L P++
Sbjct: 51 NLKKXTSPLEKYIYIXGIQERNEK---LFYRILQDDIESLXPIV 91
>pdb|1EFK|A Chain A, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|B Chain B, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|C Chain C, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|D Chain D, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFL|A Chain A, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|B Chain B, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|C Chain C, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|D Chain D, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
Length = 584
Score = 28.9 bits (63), Expect = 0.38
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 129 NLELRNIVLEKEHYILLIKGKNNKERKAFIKIAQTDIDTLAPLI 172
NL+ LEK YI I+ +N K F +I Q DI++L P++
Sbjct: 71 NLKKXTSPLEKYIYIXGIQERNEK---LFYRILQDDIESLXPIV 111
>pdb|1GNL|A Chain A, Hybrid Cluster Protein From Desulfovibrio Desulfuricans
X-Ray Structure At 1.25a Resolution Using Synchrotron
Radiation At A Wavelength Of 0.933a
pdb|1GNL|B Chain B, Hybrid Cluster Protein From Desulfovibrio Desulfuricans
X-Ray Structure At 1.25a Resolution Using Synchrotron
Radiation At A Wavelength Of 0.933a
Length = 544
Score = 26.6 bits (57), Expect = 1.9
Identities = 15/32 (46%), Positives = 19/32 (58%), Gaps = 1/32 (3%)
Query: 59 RTKHYEFYFSLKNIA-FAKHKDNLPKHLNSKD 89
R+ + F LK +A +AKH D L KH NS D
Sbjct: 140 RSLRWLITFGLKGMAAYAKHADVLGKHENSLD 171
>pdb|1GN9|A Chain A, Hybrid Cluster Protein From Desulfovibrio Desulfuricans
Atcc 27774 X-Ray Structure At 2.6a Resolution Using
Synchrotron Radiation At A Wavelength Of 1.722a
pdb|1GN9|B Chain B, Hybrid Cluster Protein From Desulfovibrio Desulfuricans
Atcc 27774 X-Ray Structure At 2.6a Resolution Using
Synchrotron Radiation At A Wavelength Of 1.722a
Length = 544
Score = 26.6 bits (57), Expect = 1.9
Identities = 15/32 (46%), Positives = 19/32 (58%), Gaps = 1/32 (3%)
Query: 59 RTKHYEFYFSLKNIA-FAKHKDNLPKHLNSKD 89
R+ + F LK +A +AKH D L KH NS D
Sbjct: 140 RSLRWLITFGLKGMAAYAKHADVLGKHENSLD 171
>pdb|1DQU|A Chain A, Crystal Structure Of The Isocitrate Lyase From Aspergillus
Nidulans
Length = 538
Score = 25.4 bits (54), Expect = 4.2
Identities = 21/48 (43%), Positives = 24/48 (49%), Gaps = 3/48 (6%)
Query: 129 NLELRNIVLEKEHYILLIKGKNNKERKAFIK-IAQTDI--DTLAPLIR 173
N L N E Y+ KGK+N E +A K IA TDI D AP R
Sbjct: 318 NSPLPNKKAAIEKYLTQSKGKSNLEARAIAKEIAGTDIYFDWEAPRTR 365
>pdb|1FVR|A Chain A, Tie2 Kinase Domain
pdb|1FVR|B Chain B, Tie2 Kinase Domain
Length = 327
Score = 24.6 bits (52), Expect = 7.1
Identities = 17/82 (20%), Positives = 33/82 (39%), Gaps = 12/82 (14%)
Query: 50 IRQFFDYLDRTKHYEFYFSLKNIAFAKHKDNLPKHLNSKDLKSFIYTLINYRTRSSYEKR 109
I++ +Y + H +F L+ + H N+ L + + + ++Y I Y +
Sbjct: 57 IKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGN---- 112
Query: 110 NKCILLLIILGGLRKSEVFNLE 131
+L LRKS V +
Sbjct: 113 --------LLDFLRKSRVLETD 126
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.326 0.141 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 894,636
Number of Sequences: 13198
Number of extensions: 32593
Number of successful extensions: 75
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 65
Number of HSP's gapped (non-prelim): 11
length of query: 186
length of database: 2,899,336
effective HSP length: 83
effective length of query: 103
effective length of database: 1,803,902
effective search space: 185801906
effective search space used: 185801906
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)