BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645624|ref|NP_207800.1| polyphosphate kinase (ppk)
[Helicobacter pylori 26695]
(675 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1HX1|B Chain B, Crystal Structure Of A Bag Domain In Co... 30 1.1
pdb|1FA0|B Chain B, Structure Of Yeast Poly(A) Polymerase B... 29 2.0
pdb|1KEK|A Chain A, Crystal Structure Of The Free Radical I... 29 2.0
pdb|1EEX|A Chain A, Crystal Structure Of The Diol Dehydrata... 28 2.6
pdb|1GEH|A Chain A, Crystal Structure Of Archaeal Rubisco (... 28 4.4
pdb|2TSY|A Chain A, Crystal Structures Of Mutant (Betak87t)... 28 4.4
pdb|1K04|A Chain A, Crystal Structure Of The Focal Adhesion... 28 4.4
pdb|1IQT|A Chain A, Solution Structure Of The C-Terminal Rn... 27 9.7
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 27 9.7
pdb|1M6N|A Chain A, Crystal Structure Of The Seca Transloca... 27 9.7
>pdb|1HX1|B Chain B, Crystal Structure Of A Bag Domain In Complex With The
Hsc70 Atpase Domain
Length = 114
Score = 29.6 bits (65), Expect = 1.1
Identities = 24/78 (30%), Positives = 38/78 (47%), Gaps = 10/78 (12%)
Query: 69 GASPEEQLE--KIKHY------LAHEIEERELEFQKIQALLFKKGLCITPYNELNLEQKA 120
G SP+E++E K+KH +A ++EE E IQ K L +L+ KA
Sbjct: 1 GNSPQEEVELKKLKHLEKSVEKIADQLEELNKELTGIQQGFLPKDLQAEALCKLDRRVKA 60
Query: 121 KAKTYFK--EQLYALVLP 136
+ + K E++ L+LP
Sbjct: 61 TIEQFMKILEEIDTLILP 78
>pdb|1FA0|B Chain B, Structure Of Yeast Poly(A) Polymerase Bound To Manganate
And 3'-Datp
pdb|1FA0|A Chain A, Structure Of Yeast Poly(A) Polymerase Bound To Manganate
And 3'-Datp
Length = 537
Score = 28.9 bits (63), Expect = 2.0
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 385 EAASKIQV-SVLVELKARF----DEESNLHWAKALERAGALVVYGVFKLKVH 431
E A+++QV +L EL RF ++ N+ A + G + YG ++L VH
Sbjct: 44 ETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAGGKIFTYGSYRLGVH 95
>pdb|1KEK|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase
pdb|1KEK|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase
pdb|1B0P|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|1B0P|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2PDA|A Chain A, Crystal Structure Of The Complex Between Pyruvate-
Ferredoxin Oxidoreductase From Desulfovibrio Africanus
And Pyruvate.
pdb|2PDA|B Chain B, Crystal Structure Of The Complex Between Pyruvate-
Ferredoxin Oxidoreductase From Desulfovibrio Africanus
And Pyruvate
Length = 1231
Score = 28.9 bits (63), Expect = 2.0
Identities = 36/157 (22%), Positives = 60/157 (37%), Gaps = 37/157 (23%)
Query: 171 LIKLPSFIFRFVELEKGLFVLAEEIVEAHLEELFLEHEILDCMAFRVTCDADIAITE-DE 229
L+ +P+ EL G+F + + AH +F +H+ D A R T A +A + E
Sbjct: 90 LLMIPNMYKISGELLPGVFHVTARAIAAHALSIFGDHQ--DIYAARQTGFAMLASSSVQE 147
Query: 230 AHDYADLMSKSLRKRNQGEIVRLQTQKGSQELLKTLLASLRSFQTHSYKKHKLTGM---H 286
AHD A L+A L + +++ H G H
Sbjct: 148 AHDMA------------------------------LVAHLAAIESNVPFMHFFDGFRTSH 177
Query: 287 IYKSAIMLNLGDLWELVNHSDFKALKSPNFTPKIHPH 323
+ +L+ D+ LVN ++ + P+ HPH
Sbjct: 178 EIQKIEVLDYADMASLVNQKALAEFRAKSMNPE-HPH 213
>pdb|1EEX|A Chain A, Crystal Structure Of The Diol Dehydratase-
Adeninylpentylcobalamin Complex From Klebsiella Oxytoca
pdb|1EEX|L Chain L, Crystal Structure Of The Diol Dehydratase-
Adeninylpentylcobalamin Complex From Klebsiella Oxytoca
pdb|1EGV|A Chain A, Crystal Structure Of The Diol Dehydratase-
Adeninylpentylcobalamin Complex From Klebsella Oxytoca
Under The Illuminated Condition.
pdb|1EGV|L Chain L, Crystal Structure Of The Diol Dehydratase-
Adeninylpentylcobalamin Complex From Klebsella Oxytoca
Under The Illuminated Condition.
pdb|1EGM|A Chain A, Crystal Structure Of Diol Dehydratase-Cyanocobalamin
Complex At 100k.
pdb|1EGM|L Chain L, Crystal Structure Of Diol Dehydratase-Cyanocobalamin
Complex At 100k.
pdb|1DIO|A Chain A, Diol Dehydratase-Cyanocobalamin Complex From Klebsiella
Oxytoca
pdb|1DIO|L Chain L, Diol Dehydratase-Cyanocobalamin Complex From Klebsiella
Oxytoca
Length = 554
Score = 28.5 bits (62), Expect = 2.6
Identities = 18/63 (28%), Positives = 33/63 (51%), Gaps = 9/63 (14%)
Query: 242 RKRNQGEIVRLQTQKGSQELLKTLLASLRSFQTHSYKKHKLTGMHIYKSAIMLNLGDLWE 301
+ RN E+V+ Q G ++ + +L + +K KLTG +++ SAI++ G +
Sbjct: 466 KNRNGLEVVKALAQGGFTDVAQDML---------NIQKAKLTGDYLHTSAIIVGDGQVLS 516
Query: 302 LVN 304
VN
Sbjct: 517 AVN 519
>pdb|1GEH|A Chain A, Crystal Structure Of Archaeal Rubisco (Ribulose 1,5-
Bisphosphate CarboxylaseOXYGENASE)
pdb|1GEH|B Chain B, Crystal Structure Of Archaeal Rubisco (Ribulose 1,5-
Bisphosphate CarboxylaseOXYGENASE)
pdb|1GEH|C Chain C, Crystal Structure Of Archaeal Rubisco (Ribulose 1,5-
Bisphosphate CarboxylaseOXYGENASE)
pdb|1GEH|D Chain D, Crystal Structure Of Archaeal Rubisco (Ribulose 1,5-
Bisphosphate CarboxylaseOXYGENASE)
pdb|1GEH|E Chain E, Crystal Structure Of Archaeal Rubisco (Ribulose 1,5-
Bisphosphate CarboxylaseOXYGENASE)
Length = 444
Score = 27.7 bits (60), Expect = 4.4
Identities = 14/54 (25%), Positives = 28/54 (50%)
Query: 506 QIKPKIIELIQNEMNHQQEGYIILKANALVDSEIIEWLYQASQKGVKIDLIIRG 559
+I KII+ ++NE ++ + + A+ L + +E L K +D++I G
Sbjct: 207 EIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITG 260
>pdb|2TSY|A Chain A, Crystal Structures Of Mutant (Betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-Induced Conformational Changes
Length = 262
Score = 27.7 bits (60), Expect = 4.4
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 42 NLDEFYMIRVAGLKQLYEHKIASKGIDGASPEEQLEKIKHYLA 84
N D+ + +VA + Y + ++ G+ GA +EK+K Y A
Sbjct: 157 NADDDLLRQVASYGRGYTYLLSRSGVTGAENHHLIEKLKEYHA 199
>pdb|1K04|A Chain A, Crystal Structure Of The Focal Adhesion Targeting Domain
Of Focal Adhesion Kinase
pdb|1K05|B Chain B, Crystal Structure Of The Focal Adhesion Targeting Domain
Of Focal Adhesion Kinase
pdb|1K05|C Chain C, Crystal Structure Of The Focal Adhesion Targeting Domain
Of Focal Adhesion Kinase
pdb|1K05|A Chain A, Crystal Structure Of The Focal Adhesion Targeting Domain
Of Focal Adhesion Kinase
Length = 162
Score = 27.7 bits (60), Expect = 4.4
Identities = 18/53 (33%), Positives = 31/53 (57%), Gaps = 1/53 (1%)
Query: 340 LFHPYESFEPVIDLIEQAASDPATLSIKMTLYRVGKH-SPIVKALIEAASKIQ 391
L P +S+ + L Q S P T ++ + +V ++ + +VKA+IE +SKIQ
Sbjct: 1 LSSPADSYNEGVKLQPQEISPPPTANLDRSNDKVYENVTGLVKAVIEMSSKIQ 53
>pdb|1IQT|A Chain A, Solution Structure Of The C-Terminal Rna-Binding Domain Of
Heterogeneous Nuclear Ribonucleoprotein D0 (Auf1)
Length = 75
Score = 26.6 bits (57), Expect = 9.7
Identities = 15/59 (25%), Positives = 23/59 (38%)
Query: 67 IDGASPEEQLEKIKHYLAHEIEERELEFQKIQALLFKKGLCITPYNELNLEQKAKAKTY 125
+ G SP+ EKI+ Y E +E ++G C + E +K K Y
Sbjct: 4 VGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY 62
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 26.6 bits (57), Expect = 9.7
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 70 ASPEEQLEKIKHYLAHEIEERELEFQKIQA 99
A+ +++LE+I H + IEE E Q++QA
Sbjct: 919 AAKKQELEEILHEMEARIEEEEERSQQLQA 948
>pdb|1M6N|A Chain A, Crystal Structure Of The Seca Translocation Atpase From
Bacillus Subtilis
pdb|1M74|A Chain A, Crystal Structure Of Mg-Adp-Bound Seca From Bacillus
Subtilis
Length = 802
Score = 26.6 bits (57), Expect = 9.7
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 57 LYEHKIASKGIDGASPEEQLEKIKHYLAHEIEERELEFQKIQALLFKK 104
L E + I G P+E LE I + + E+E +F K Q F+K
Sbjct: 666 LDEGALEKSDIFGKEPDEMLELIMDRIITKYNEKEEQFGKEQMREFEK 713
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.136 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,588,256
Number of Sequences: 13198
Number of extensions: 144515
Number of successful extensions: 356
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 351
Number of HSP's gapped (non-prelim): 10
length of query: 675
length of database: 2,899,336
effective HSP length: 94
effective length of query: 581
effective length of database: 1,658,724
effective search space: 963718644
effective search space used: 963718644
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)