BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645625|ref|NP_207801.1| dihydroorotate
dehydrogenase (pyrD) [Helicobacter pylori 26695]
(351 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1F76|A Chain A, Escherichia Coli Dihydroorotate Dehydro... 223 3e-59
pdb|1D3H|A Chain A, Human Dihydroorotate Dehydrogenase Comp... 194 1e-50
pdb|2DOR|A Chain A, Dihydroorotate Dehydrogenase A From Lac... 56 7e-09
pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) F... 55 1e-08
pdb|1EP3|A Chain A, Crystal Structure Of Lactococcus Lactis... 55 2e-08
pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) F... 54 2e-08
pdb|1LBF|A Chain A, Crystal Structure Of Indole-3-Glycerol ... 30 0.41
pdb|1IGS| Indole-3-Glycerolphosphate Synthase From Sulfol... 30 0.41
pdb|1CJA|A Chain A, Actin-Fragmin Kinase, Catalytic Domain ... 27 4.6
>pdb|1F76|A Chain A, Escherichia Coli Dihydroorotate Dehydrogenase
pdb|1F76|B Chain B, Escherichia Coli Dihydroorotate Dehydrogenase
pdb|1F76|D Chain D, Escherichia Coli Dihydroorotate Dehydrogenase
pdb|1F76|E Chain E, Escherichia Coli Dihydroorotate Dehydrogenase
Length = 336
Score = 223 bits (567), Expect = 3e-59
Identities = 137/337 (40%), Positives = 186/337 (54%), Gaps = 18/337 (5%)
Query: 3 YSLVKKYLFSLDAEDAHEKVCKILRMLSSSPFLCNLIDSQWGYQNPKLENEILGLHFPNP 62
Y V+K LF LD E AHE + LR ++ +PF ++ + P GL F NP
Sbjct: 3 YPFVRKALFQLDPERAHEFTFQQLRRITGTPF-----EALVRQKVPAKPVNCXGLTFKNP 57
Query: 63 LGLAAGFDKNASMLRALMAFGFGYLEAGTLTNEAQVGNERPRLFRHIEEESLQNAMGFNN 122
LGLAAG DK+ + AL A GFG +E GT+T Q GN++PRLFR ++ E L N GFNN
Sbjct: 58 LGLAAGLDKDGECIDALGAXGFGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINRXGFNN 117
Query: 123 YGAILGVRSFKRFAPYKTPIGINLGKNKHIEQAHALEDYKAVLSKCLNIGDYYTFNLSSP 182
G V + K+ A Y +GIN+GKNK +DY K Y N+SSP
Sbjct: 118 LGVDNLVENVKK-AHYDGVLGINIGKNKDTPVEQGKDDYLICXEKIYAYAGYIAINISSP 176
Query: 183 NTPNLRDLQNKAFVHELFCMAKEMT-------HK--PLFLKIAPDLETDDMLEIVNSAIG 233
NTP LR LQ + +L K HK P+ +KIAPDL ++++++ +S +
Sbjct: 177 NTPGLRTLQYGEALDDLLTAIKNKQNDLQAXHHKYVPIAVKIAPDLSEEELIQVADSLVR 236
Query: 234 AGAHGIIATNTTIDKSLVFAPK---EMGGLSGKCLTKKSREIFKELAKAFFNKSVLVSVG 290
G+IATNTT+D+SLV K + GGLSG+ L KS EI + L+ + ++ VG
Sbjct: 237 HNIDGVIATNTTLDRSLVQGXKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVG 296
Query: 291 GISDAKEAYERIKMGASLLQIYSAFIYNGPNLCQNIL 327
GI A E+I GASL+QIYS FI+ GP L + I+
Sbjct: 297 GIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEIV 333
>pdb|1D3H|A Chain A, Human Dihydroorotate Dehydrogenase Complexed With
Antiproliferative Agent A771726
pdb|1D3G|A Chain A, Human Dihydroorotate Dehydrogenase Complexed With
Brequinar Analog
Length = 367
Score = 194 bits (493), Expect = 1e-50
Identities = 126/356 (35%), Positives = 186/356 (51%), Gaps = 27/356 (7%)
Query: 13 LDAEDAHEKVCKILRMLSSSPFLCNLIDSQWGYQNPKLENEILGLHFPNPLGLAAGFDKN 72
LD E AH + + L+ + LE +LG F NP+G+AAGFDK+
Sbjct: 21 LDPESAHRLAVRFTSL--------GLLPRARFQDSDMLEVRVLGHKFRNPVGIAAGFDKH 72
Query: 73 ASMLRALMAFGFGYLEAGTLTNEAQVGNERPRLFRHIEEESLQNAMGFNNYGAI-----L 127
+ L GFG++E G++T + Q GN RPR+FR E++++ N GFN++G L
Sbjct: 73 GEAVDGLYKMGFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSVVEHRL 132
Query: 128 GVRSFK--RFAPYKTPIGINLGKNKHIEQAHALEDYKAVLSKCLNIGDYYTFNLSSPNTP 185
R K + P+G+NLGKNK A EDY + + DY N+SSPNT
Sbjct: 133 RARQQKQAKLTEDGLPLGVNLGKNK--TSVDAAEDYAEGVRVLGPLADYLVVNVSSPNTA 190
Query: 186 NLRDLQNKAFVHELFCMAKE------MTHKP-LFLKIAPDLETDDMLEIVNSAIGAGAHG 238
LR LQ KA + L + H+P + +KIAPDL + D +I + G G
Sbjct: 191 GLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDG 250
Query: 239 IIATNTTIDKSLVF---APKEMGGLSGKCLTKKSREIFKELAKAFFNKSVLVSVGGISDA 295
+I TNTT+ + E GGLSGK L S + +E+ + ++ VGG+S
Sbjct: 251 LIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSG 310
Query: 296 KEAYERIKMGASLLQIYSAFIYNGPNLCQNILKDLVKLLQKDGFLSVKEAIGADLR 351
++A E+I+ GASL+Q+Y+A + GP + + ++L LL++ GF V +AIGAD R
Sbjct: 311 QDALEKIRAGASLVQLYTALTFWGPPVVGKVKRELEALLKEQGFGGVTDAIGADHR 366
>pdb|2DOR|A Chain A, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
Complexed With Orotate
pdb|2DOR|B Chain B, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
Complexed With Orotate
pdb|1DOR|A Chain A, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
pdb|1DOR|B Chain B, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
Length = 311
Score = 55.8 bits (133), Expect = 7e-09
Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 18/184 (9%)
Query: 178 NLSSPNTPNLRDLQ-----NKAFVHELFCMAKEMTHKPLFLKIAPDLET---DDMLEIVN 229
NLS PN P L + + E+F KPL +K+ P + D M EI+N
Sbjct: 127 NLSCPNVPGKPQLAYDFEATEKLLKEVFTFFT----KPLGVKLPPYFDLVHFDIMAEILN 182
Query: 230 SAIGAGAHGI--IATNTTID---KSLVFAPKE-MGGLSGKCLTKKSREIFKELAKAFFNK 283
+ + I ID +S+V PK+ GG+ G + + + +
Sbjct: 183 QFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPE 242
Query: 284 SVLVSVGGISDAKEAYERIKMGASLLQIYSAFIYNGPNLCQNILKDLVKLLQKDGFLSVK 343
++ GGI ++A+E + GA++LQI +A GP + I+K+L +++ + G+ S+
Sbjct: 243 IQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRIIKELEEIMNQKGYQSIA 302
Query: 344 EAIG 347
+ G
Sbjct: 303 DFHG 306
>pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And
5-Fluorouracil
pdb|1H7X|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And
5-Fluorouracil
pdb|1H7X|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And
5-Fluorouracil
pdb|1H7X|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And
5-Fluorouracil
Length = 1025
Score = 55.1 bits (131), Expect = 1e-08
Identities = 80/322 (24%), Positives = 131/322 (39%), Gaps = 32/322 (9%)
Query: 53 EILGLHFPNPLGLA-AGFDKNASMLRALMAFGFGYLEAGTLTNEAQ-VGNERPRLFRHIE 110
E+ GL F NP GLA A ++SM+R G+G+ T + + V N PR+ R
Sbjct: 536 EMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTT 595
Query: 111 EESLQNA--MGFNNYGAILGVRSFKRFAPYKTPIGINLGKNKHIEQ---AHALEDYKAVL 165
+ F N ++ ++ + T + + N I ++ D+ +
Sbjct: 596 SGPMYGPGQSSFLNI-ELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELS 654
Query: 166 SKCLNIG-DYYTFNLSSPNTPNLRDL-----QNKAFVHELFCMAKEMTHKPLFLKIAPDL 219
K G D NLS+P+ R + Q+ V + ++ P F K+ P++
Sbjct: 655 RKAEASGADALELNLSAPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNV 714
Query: 220 ETDDMLEIVNSAIGAGAHGIIATNTTIDKS----------LVFAPKEM--GGLSGKCLTK 267
D++ I +A GA G+ ATNT V A K GG+SG +
Sbjct: 715 T--DIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRP 772
Query: 268 KSREIFKELAKAFFNKSVLVSVGGISDAKEAYERIKMGASLLQIYSAFIYNGPNLCQNIL 327
+ +A+A +L + GGI A+ + + GAS+LQ+ SA + Q+
Sbjct: 773 IALRAVTTIARALPGFPILAT-GGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYC 831
Query: 328 KDLVKLLQKDGFLSVKEAIGAD 349
L LL S++E G D
Sbjct: 832 TGLKALLY---LKSIEELQGWD 850
>pdb|1EP3|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B. Data Collected Under Cryogenic
Conditions.
pdb|1EP1|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B
pdb|1EP2|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B Complexed With Orotate
Length = 311
Score = 54.7 bits (130), Expect = 2e-08
Identities = 73/317 (23%), Positives = 136/317 (42%), Gaps = 32/317 (10%)
Query: 46 QNPKLENEILGLHFPNPLGLAAG---FDKNASMLRALMAFGFGYLEAGTLTNEAQVGNER 102
+N +L ++ GL NP+ A+G F + + L G ++A TL + GN
Sbjct: 3 ENNRLSVKLPGLDLKNPIIPASGCFGFGEEYAKYYDLNKLGSIMVKATTL--HPRFGNPT 60
Query: 103 PRLFRHIEEESLQNAMGFNNYGAILGVRSFKRFAPYKTPIGINLGKNKHIEQAHALEDYK 162
PR+ + NA+G N G + + + P + E+A DY
Sbjct: 61 PRVAE--TASGMLNAIGLQNPGLEVIMTEKLPWLNENFPELPIIANVAGSEEA----DYV 114
Query: 163 AVLSKCLNIGDYYT-----FNLSSPNTPNLRDL--QNKAFVHELFCMAKEMTHKPLFLKI 215
AV C IGD N+S PN + + L K ++ PL++K+
Sbjct: 115 AV---CAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVSKVPLYVKL 171
Query: 216 APDLETDDMLEIVNSAIGAGAHGIIATNTTIDKSLVFAPKE------MGGLSGKCLTKKS 269
+P++ D++ I + AGA G+ NT + ++ GGLSG + +
Sbjct: 172 SPNVT--DIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVA 229
Query: 270 REIFKELAKAFFNKSVLVSVGGISDAKEAYERIKMGASLLQIYSAFIYNGPNLCQNILKD 329
++ ++A+ ++ +GG+++A++ E GAS + + +A + P +C I+
Sbjct: 230 LKLIHQVAQDV--DIPIIGMGGVANAQDVLEMYMAGASAVAVGTA-NFADPFVCPKIIDK 286
Query: 330 LVKLLQKDGFLSVKEAI 346
L +L+ + S++ I
Sbjct: 287 LPELMDQYRIESLESLI 303
>pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1H7W|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GT8|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1H7W|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GTH|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTE|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTH|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GT8|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GT8|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
Length = 1025
Score = 54.3 bits (129), Expect = 2e-08
Identities = 80/322 (24%), Positives = 130/322 (39%), Gaps = 32/322 (9%)
Query: 53 EILGLHFPNPLGLA-AGFDKNASMLRALMAFGFGYLEAGTLTNEAQ-VGNERPRLFRHIE 110
E+ GL F NP GLA A ++SM+R G+G+ T + + V N PR+ R
Sbjct: 536 EMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTT 595
Query: 111 EESLQNA--MGFNNYGAILGVRSFKRFAPYKTPIGINLGKNKHIEQ---AHALEDYKAVL 165
+ F N ++ ++ + T + + N I ++ D+ +
Sbjct: 596 SGPMYGPGQSSFLNI-ELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELS 654
Query: 166 SKCLNIG-DYYTFNLSSPNTPNLRDL-----QNKAFVHELFCMAKEMTHKPLFLKIAPDL 219
K G D NLS P+ R + Q+ V + ++ P F K+ P++
Sbjct: 655 RKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNV 714
Query: 220 ETDDMLEIVNSAIGAGAHGIIATNTTIDKS----------LVFAPKEM--GGLSGKCLTK 267
D++ I +A GA G+ ATNT V A K GG+SG +
Sbjct: 715 T--DIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRP 772
Query: 268 KSREIFKELAKAFFNKSVLVSVGGISDAKEAYERIKMGASLLQIYSAFIYNGPNLCQNIL 327
+ +A+A +L + GGI A+ + + GAS+LQ+ SA + Q+
Sbjct: 773 IALRAVTTIARALPGFPILAT-GGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYC 831
Query: 328 KDLVKLLQKDGFLSVKEAIGAD 349
L LL S++E G D
Sbjct: 832 TGLKALLY---LKSIEELQGWD 850
>pdb|1LBF|A Chain A, Crystal Structure Of Indole-3-Glycerol Phosphate Syntase
(Igps)with Reduced
1-(O-Caboxyphenylamino)-1-Deoxyribulose 5-Phosphate
(Rcdrp)
pdb|1LBL|A Chain A, Crystal Structure Of Indole-3-Glycerol Phosphate Synthase
(Igps) In Complex With 1-(O-Carboxyphenylamino)-1-
Deoxyribulose 5'-Phosphate (Cdrp)
pdb|1A53| Complex Of Indole-3-Glycerolphosphate Synthase From Sulfolobus
Solfataricus With Indole-3-Glycerolphosphate At 2.0 A
Resolution
Length = 247
Score = 30.0 bits (66), Expect = 0.41
Identities = 60/254 (23%), Positives = 108/254 (41%), Gaps = 28/254 (11%)
Query: 90 GTLTNEAQVGNERPRLFRHIEEESL----QNAMGFNNYGAILGVRSFKRFAPYKTPIGIN 145
G L + Q+ RP FR + + + + FN + +KR K+P G++
Sbjct: 6 GWLKDVVQLSLRRPS-FRASRQRPIISLNERILEFNKRNITAIIAEYKR----KSPSGLD 60
Query: 146 LGKNKHIEQAHALEDYKAVLS-----KCLNIGDYYTFN--LSSPNTPNLRD--LQNKAFV 196
+ ++ IE + +E Y LS K N G Y T SS + P L + ++ +
Sbjct: 61 VERDP-IEYSKFMERYAVGLSILTEEKYFN-GSYETLRKIASSVSIPILMKDFIVKESQI 118
Query: 197 HELFCMAKEMTHKPLFLKIAPDLETDDMLEIVNSAIGAGAHGIIATN--TTIDKSLVFAP 254
+ + + + L +KI + E + +LE S G +I N +D +L
Sbjct: 119 DDAYNLGADTVL--LIVKILTERELESLLEYARSY---GMEPLIEINDENDLDIALRIGA 173
Query: 255 KEMGGLSGKCLTKK-SREIFKELAKAFFNKSVLVSVGGISDAKEAYERIKMGASLLQIYS 313
+ +G S T + ++E ++L + V V+ GIS+ E E K+G + I S
Sbjct: 174 RFIGINSRDLETLEINKENQRKLISMIPSNVVKVAESGISERNEIEELRKLGVNAFLIGS 233
Query: 314 AFIYNGPNLCQNIL 327
+ + N + + IL
Sbjct: 234 SLMRNPEKIKEFIL 247
>pdb|1IGS| Indole-3-Glycerolphosphate Synthase From Sulfolobus Solfataricus
At 2.0 A Resolution
pdb|1JUL| Indole-3-Glycerolphosphate Synthase From Sulfolobus Solfataricus
In A Second Orthorhombic Crystal Form
pdb|1JUK| Indole-3-Glycerolphosphate Synthase From Sulfolobus Solfataricus
In A Trigonal Crystal Form
Length = 248
Score = 30.0 bits (66), Expect = 0.41
Identities = 60/254 (23%), Positives = 108/254 (41%), Gaps = 28/254 (11%)
Query: 90 GTLTNEAQVGNERPRLFRHIEEESL----QNAMGFNNYGAILGVRSFKRFAPYKTPIGIN 145
G L + Q+ RP FR + + + + FN + +KR K+P G++
Sbjct: 7 GWLKDVVQLSLRRPS-FRASRQRPIISLNERILEFNKRNITAIIAEYKR----KSPSGLD 61
Query: 146 LGKNKHIEQAHALEDYKAVLS-----KCLNIGDYYTFN--LSSPNTPNLRD--LQNKAFV 196
+ ++ IE + +E Y LS K N G Y T SS + P L + ++ +
Sbjct: 62 VERDP-IEYSKFMERYAVGLSILTEEKYFN-GSYETLRKIASSVSIPILMKDFIVKESQI 119
Query: 197 HELFCMAKEMTHKPLFLKIAPDLETDDMLEIVNSAIGAGAHGIIATN--TTIDKSLVFAP 254
+ + + + L +KI + E + +LE S G +I N +D +L
Sbjct: 120 DDAYNLGADTVL--LIVKILTERELESLLEYARSY---GMEPLIEINDENDLDIALRIGA 174
Query: 255 KEMGGLSGKCLTKK-SREIFKELAKAFFNKSVLVSVGGISDAKEAYERIKMGASLLQIYS 313
+ +G S T + ++E ++L + V V+ GIS+ E E K+G + I S
Sbjct: 175 RFIGINSRDLETLEINKENQRKLISMIPSNVVKVAESGISERNEIEELRKLGVNAFLIGS 234
Query: 314 AFIYNGPNLCQNIL 327
+ + N + + IL
Sbjct: 235 SLMRNPEKIKEFIL 248
>pdb|1CJA|A Chain A, Actin-Fragmin Kinase, Catalytic Domain From Physarum
Polycephalum
pdb|1CJA|B Chain B, Actin-Fragmin Kinase, Catalytic Domain From Physarum
Polycephalum
Length = 342
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/44 (29%), Positives = 22/44 (49%)
Query: 55 LGLHFPNPLGLAAGFDKNASMLRALMAFGFGYLEAGTLTNEAQV 98
LGLH P +++ ++ +ML L A + TL N+A +
Sbjct: 115 LGLHAPKVRVVSSNSEEGTNMLECLAAIDKSFRVITTLANQANI 158
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.138 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,029,022
Number of Sequences: 13198
Number of extensions: 84564
Number of successful extensions: 175
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 158
Number of HSP's gapped (non-prelim): 11
length of query: 351
length of database: 2,899,336
effective HSP length: 89
effective length of query: 262
effective length of database: 1,724,714
effective search space: 451875068
effective search space used: 451875068
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)