BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645629|ref|NP_207805.1| hypothetical protein
[Helicobacter pylori 26695]
         (168 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207805.1|  (NC_000915) hypothetical protein [Helicoba...   320  5e-87
pir||G64646  hypothetical protein HP1015 - Helicobacter pylo...   318  2e-86
ref|NP_223127.1|  (NC_000921) putative [Helicobacter pylori ...   308  1e-83

>ref|NP_207805.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 gb|AAD08069.1| (AE000610) H. pylori predicted coding region HP1015 [Helicobacter
           pylori 26695]
          Length = 168

 Score =  320 bits (819), Expect = 5e-87
 Identities = 168/168 (100%), Positives = 168/168 (100%)

Query: 1   MLFIVSSGAKSFQISNLFNNQLAYIVLLSLFLCALGFIAGAIGFYRLSKITRHLSFFENF 60
           MLFIVSSGAKSFQISNLFNNQLAYIVLLSLFLCALGFIAGAIGFYRLSKITRHLSFFENF
Sbjct: 1   MLFIVSSGAKSFQISNLFNNQLAYIVLLSLFLCALGFIAGAIGFYRLSKITRHLSFFENF 60

Query: 61  AFSFLAVILCAILSYLVPNASNALSLIGNGVSIFYLHKLYRELSLYTQERFFLSGFRLLL 120
           AFSFLAVILCAILSYLVPNASNALSLIGNGVSIFYLHKLYRELSLYTQERFFLSGFRLLL
Sbjct: 61  AFSFLAVILCAILSYLVPNASNALSLIGNGVSIFYLHKLYRELSLYTQERFFLSGFRLLL 120

Query: 121 FSFMLALLGILVQALVIIFLTTAVVLMCVALGFLARAFLNFSQVFLKA 168
           FSFMLALLGILVQALVIIFLTTAVVLMCVALGFLARAFLNFSQVFLKA
Sbjct: 121 FSFMLALLGILVQALVIIFLTTAVVLMCVALGFLARAFLNFSQVFLKA 168



>pir||G64646 hypothetical protein HP1015 - Helicobacter pylori (strain 26695)
          Length = 205

 Score =  318 bits (815), Expect = 2e-86
 Identities = 167/168 (99%), Positives = 168/168 (99%)

Query: 1   MLFIVSSGAKSFQISNLFNNQLAYIVLLSLFLCALGFIAGAIGFYRLSKITRHLSFFENF 60
           +LFIVSSGAKSFQISNLFNNQLAYIVLLSLFLCALGFIAGAIGFYRLSKITRHLSFFENF
Sbjct: 38  VLFIVSSGAKSFQISNLFNNQLAYIVLLSLFLCALGFIAGAIGFYRLSKITRHLSFFENF 97

Query: 61  AFSFLAVILCAILSYLVPNASNALSLIGNGVSIFYLHKLYRELSLYTQERFFLSGFRLLL 120
           AFSFLAVILCAILSYLVPNASNALSLIGNGVSIFYLHKLYRELSLYTQERFFLSGFRLLL
Sbjct: 98  AFSFLAVILCAILSYLVPNASNALSLIGNGVSIFYLHKLYRELSLYTQERFFLSGFRLLL 157

Query: 121 FSFMLALLGILVQALVIIFLTTAVVLMCVALGFLARAFLNFSQVFLKA 168
           FSFMLALLGILVQALVIIFLTTAVVLMCVALGFLARAFLNFSQVFLKA
Sbjct: 158 FSFMLALLGILVQALVIIFLTTAVVLMCVALGFLARAFLNFSQVFLKA 205



>ref|NP_223127.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||A71935 hypothetical protein jhp0408 - Helicobacter pylori (strain J99)
 gb|AAD05989.1| (AE001475) putative [Helicobacter pylori J99]
          Length = 202

 Score =  308 bits (790), Expect = 1e-83
 Identities = 158/168 (94%), Positives = 165/168 (98%)

Query: 1   MLFIVSSGAKSFQISNLFNNQLAYIVLLSLFLCALGFIAGAIGFYRLSKITRHLSFFENF 60
           +LF+VSSGAKSFQISNLFNNQLAYIVLLSLFLCA+GFIAGA+GFYRLSKITRHLSFFENF
Sbjct: 35  VLFLVSSGAKSFQISNLFNNQLAYIVLLSLFLCAIGFIAGAVGFYRLSKITRHLSFFENF 94

Query: 61  AFSFLAVILCAILSYLVPNASNALSLIGNGVSIFYLHKLYRELSLYTQERFFLSGFRLLL 120
           AFSFLAVILCA+LSYLVPNASNALSLIGNGVSIFYLHKLYRELSLYTQERFFLSGFRLLL
Sbjct: 95  AFSFLAVILCALLSYLVPNASNALSLIGNGVSIFYLHKLYRELSLYTQERFFLSGFRLLL 154

Query: 121 FSFMLALLGILVQALVIIFLTTAVVLMCVALGFLARAFLNFSQVFLKA 168
           FSFMLALLG+LVQALVIIFLT AV+LMCVAL FL RAFLNFSQVFLKA
Sbjct: 155 FSFMLALLGVLVQALVIIFLTIAVILMCVALSFLGRAFLNFSQVFLKA 202



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.338    0.149    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,362,523
Number of Sequences: 1026957
Number of extensions: 3215946
Number of successful extensions: 18358
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18355
Number of HSP's gapped (non-prelim): 3
length of query: 168
length of database: 324,149,939
effective HSP length: 112
effective length of query: 56
effective length of database: 209,130,755
effective search space: 11711322280
effective search space used: 11711322280
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 93 (40.4 bits)