BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645634|ref|NP_207810.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(406 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207810.1| (NC_000915) conserved hypothetical protein... 799 0.0
ref|NP_223123.1| (NC_000921) putative [Helicobacter pylori ... 760 0.0
ref|NP_282735.1| (NC_002163) hypothetical protein Cj1607 [C... 290 3e-77
ref|NP_420546.1| (NC_002696) conserved hypothetical protein... 152 7e-36
ref|NP_539780.1| (NC_003317) 2-C-METHYL-D-ERYTHRITOL 4-PHOS... 150 3e-35
sp|Q08113|ISDF_RHOCA IspD/ispF bifunctional enzyme [Include... 147 2e-34
ref|NP_654035.1| (NC_003995) YgbB, YgbB family [Bacillus an... 142 5e-33
emb|CAB51895.1| (AJ009974) hypothetical protein [Zymomonas ... 140 4e-32
ref|NP_563232.1| (NC_003366) conserved hypothetical protein... 138 1e-31
sp|Q9RNZ1|ISDF_ZYMMO IspD/ispF bifunctional enzyme [Include... 136 4e-31
ref|NP_102198.1| (NC_002678) hypothetical protein [Mesorhiz... 136 4e-31
ref|NP_230180.1| (NC_002505) conserved hypothetical protein... 136 4e-31
ref|NP_240974.1| (NC_002570) BH0108~unknown conserved prote... 136 5e-31
ref|NP_354449.1| (NC_003062) AGR_C_2659p [Agrobacterium tum... 135 7e-31
ref|NP_463767.1| (NC_003210) similar to B. subtilis YacN pr... 135 7e-31
ref|NP_469613.1| (NC_003212) similar to B. subtilis YacN pr... 135 9e-31
ref|NP_438831.1| (NC_000907) conserved hypothetical protein... 135 9e-31
ref|NP_387972.1| (NC_000964) similar to hypothetical protei... 134 2e-30
ref|NP_623857.1| (NC_003869) 2C-methyl-D-erythritol 2,4-cyc... 134 2e-30
ref|NP_213652.1| (NC_000918) hypothetical protein [Aquifex ... 134 2e-30
ref|NP_461850.1| (NC_003197) 2C-methyl-d-erythritol-2,4-cyc... 134 3e-30
ref|NP_662484.1| (NC_002932) 2C-methyl-D-erythritol 2,4-cyc... 134 3e-30
ref|NP_457318.1| (NC_003198) 2C-methyl-D-erythritol 2,4-cyc... 133 4e-30
ref|NP_564819.1| (NM_105070) expressed protein [Arabidopsis... 133 4e-30
ref|NP_289295.1| (NC_002655) orf, hypothetical protein [Esc... 133 4e-30
ref|NP_385562.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN... 133 4e-30
pdb|1GX1|A Chain A, Structure Of 2c-Methyl-D-Erythritol-2,4... 131 1e-29
ref|NP_240231.1| (NC_002528) hypothetical protein [Buchnera... 131 2e-29
gb|AAM62786.1| (AY085564) 2C-methyl-D-erythritol 2,4-cyclod... 130 2e-29
ref|NP_519765.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN... 130 3e-29
ref|NP_246548.1| (NC_002663) unknown [Pasteurella multocida... 130 3e-29
ref|NP_347074.1| (NC_003030) Putative enzyme of deoxyxylulo... 129 8e-29
gb|AAF65155.1|AF250236_1 (AF250236) 2C-methyl-D-erythritol ... 129 8e-29
ref|NP_252317.1| (NC_002516) conserved hypothetical protein... 127 2e-28
sp|Q47956|ISPF_HAEDU 2-C-methyl-D-erythritol 2,4-cyclodipho... 127 2e-28
ref|NP_487923.1| (NC_003272) 2-C-methyl-D-erythritol 2,4-cy... 126 4e-28
ref|NP_274520.1| (NC_003112) YgbB/YacN family protein [Neis... 125 7e-28
ref|NP_284427.1| (NC_003116) conserved hypothetical protein... 125 1e-27
ref|NP_406823.1| (NC_003143) 2C-methyl-D-erythritol 2,4-cyc... 123 3e-27
ref|NP_660743.1| (NC_004061) hypothetical 16.9 kD protein i... 121 1e-26
ref|NP_440786.1| (NC_000911) hypothetical protein [Synechoc... 120 2e-26
ref|NP_642053.1| (NC_003919) 2C-methyl-D-erythritol 2,4-cyc... 120 2e-26
ref|NP_228456.1| (NC_000853) conserved hypothetical protein... 119 6e-26
ref|NP_637073.1| (NC_003902) 2C-methyl-D-erythritol 2,4-cyc... 119 6e-26
ref|NP_602588.1| (NC_003454) 2C-methyl-D-erythritol 2,4-cyc... 115 9e-25
ref|NP_298583.1| (NC_002488) conserved hypothetical protein... 114 2e-24
gb|AAG35071.1|AF321531_1 (AF321531) 2C-methyl-D-erythritol ... 110 2e-23
ref|NP_218953.1| (NC_000919) conserved hypothetical protein... 108 1e-22
dbj|BAB86885.1| (AB082126) 2-C-methyl-D-erythritol 2,4-cycl... 97 4e-19
ref|NP_293954.1| (NC_001263) conserved hypothetical protein... 96 1e-18
ref|NP_301349.1| (NC_002677) putative 2-C-methyl-D-erythrit... 94 2e-18
ref|NP_473012.1| (NC_000910) YgbB protein, 1st euk. member ... 94 2e-18
gb|AAF24570.1|AC007764_12 (AC007764) F22C12.26 [Arabidopsis... 89 1e-16
ref|NP_601858.1| (NC_003450) COG0245:2C-methyl-D-erythritol... 86 1e-15
ref|NP_218098.1| (NC_000962) hypothetical protein Rv3581c [... 79 7e-14
ref|NP_623859.1| (NC_003869) 4-diphosphocytidyl-2-methyl-D-... 72 9e-12
ref|NP_628408.1| (NC_003888) 2C-methyl-D-erythriol 2,4-cycl... 70 6e-11
sp|Q06755|ISPD_BACSU 2-C-methyl-D-erythritol 4-phosphate cy... 67 3e-10
ref|NP_387971.1| (NC_000964) similar to hypothetical protei... 66 8e-10
ref|NP_654034.1| (NC_003995) UPF0007, Uncharacterized prote... 64 3e-09
ref|NP_219946.1| (NC_000117) YgbB family [Chlamydia trachom... 61 2e-08
ref|NP_563345.1| (NC_003366) conserved hypothetical protein... 61 3e-08
ref|NP_469612.1| (NC_003212) similar to nucleotidylyl trans... 60 4e-08
ref|NP_463766.1| (NC_003210) similar to nucleotidylyl trans... 60 5e-08
ref|NP_213907.1| (NC_000918) hypothetical protein [Aquifex ... 60 6e-08
ref|NP_602396.1| (NC_003454) 2-C-methyl-D-erythritol 4-phos... 60 6e-08
ref|NP_224775.1| (NC_000922) Sugar Nucleotide Phosphorylase... 60 6e-08
ref|NP_297092.1| (NC_002620) conserved hypothetical protein... 59 1e-07
ref|NP_349781.1| (NC_003030) 4-diphosphocytidyl-2-methyleri... 57 5e-07
ref|NP_229194.1| (NC_000853) conserved hypothetical protein... 56 7e-07
ref|NP_224743.1| (NC_000922) YgbB family hypothetical prote... 55 1e-06
ref|NP_297120.1| (NC_002620) conserved hypothetical protein... 54 3e-06
ref|NP_565286.1| (NM_126305) putative sugar nucleotide phos... 52 1e-05
ref|NP_219975.1| (NC_000117) Sugar Nucleotide Phosphorylase... 51 3e-05
ref|NP_240973.1| (NC_002570) BH0107~unknown conserved prote... 50 5e-05
ref|NP_438832.1| (NC_000907) conserved hypothetical protein... 49 1e-04
ref|NP_289296.1| (NC_002655) orf, hypothetical protein [Esc... 49 1e-04
ref|NP_246547.1| (NC_002663) unknown [Pasteurella multocida... 49 1e-04
ref|NP_417227.1| (NC_000913) orf, hypothetical protein [Esc... 47 4e-04
ref|NP_296323.1| (NC_001263) conserved hypothetical protein... 44 0.003
ref|NP_489207.1| (NC_003272) 4-diphosphocytidyl-2C-methyl-D... 44 0.003
>ref|NP_207810.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
sp|O25664|ISDF_HELPY IspD/ispF bifunctional enzyme [Includes: 2-C-methyl-D-erythritol
4-phosphate cytidylyltransferase
(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)
(MEP cytidylyltransferase) (MCT);
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
(MECPS) (MECD>
pir||D64647 conserved hypothetical protein HP1020 - Helicobacter pylori
(strain 26695)
gb|AAD08064.1| (AE000610) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 406
Score = 799 bits (2063), Expect = 0.0
Identities = 406/406 (100%), Positives = 406/406 (100%)
Query: 1 MSLIRVNGEAFKLSLESLEEDPFETKETLETLIKQTSVVLLAAGESRRFSQTIKKQWLRS 60
MSLIRVNGEAFKLSLESLEEDPFETKETLETLIKQTSVVLLAAGESRRFSQTIKKQWLRS
Sbjct: 1 MSLIRVNGEAFKLSLESLEEDPFETKETLETLIKQTSVVLLAAGESRRFSQTIKKQWLRS 60
Query: 61 NHTPLWLSVYESFKEALDFKEIILVVSELDYIYIKRHYPEIKLVKGGASRQESVRNALKI 120
NHTPLWLSVYESFKEALDFKEIILVVSELDYIYIKRHYPEIKLVKGGASRQESVRNALKI
Sbjct: 61 NHTPLWLSVYESFKEALDFKEIILVVSELDYIYIKRHYPEIKLVKGGASRQESVRNALKI 120
Query: 121 IDSAYTLTSDVARGLANIEALKNLFLTLQQTSHYCIAPYLPCYDTAIYYNEALDREAIKL 180
IDSAYTLTSDVARGLANIEALKNLFLTLQQTSHYCIAPYLPCYDTAIYYNEALDREAIKL
Sbjct: 121 IDSAYTLTSDVARGLANIEALKNLFLTLQQTSHYCIAPYLPCYDTAIYYNEALDREAIKL 180
Query: 181 IQTPQLSHTKALQSALNQGDFKDESSAILQAFPDRVSYIEGSKDLHKLTTSGDLKHFTLF 240
IQTPQLSHTKALQSALNQGDFKDESSAILQAFPDRVSYIEGSKDLHKLTTSGDLKHFTLF
Sbjct: 181 IQTPQLSHTKALQSALNQGDFKDESSAILQAFPDRVSYIEGSKDLHKLTTSGDLKHFTLF 240
Query: 241 FNPAKDTFIGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKG 300
FNPAKDTFIGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKG
Sbjct: 241 FNPAKDTFIGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKG 300
Query: 301 GDIGEWFPDNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILE 360
GDIGEWFPDNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILE
Sbjct: 301 GDIGEWFPDNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILE 360
Query: 361 NLSQLLGLEKSQISLKATTMEKMGFIGKQEGLLVQAHVSMRYKQKL 406
NLSQLLGLEKSQISLKATTMEKMGFIGKQEGLLVQAHVSMRYKQKL
Sbjct: 361 NLSQLLGLEKSQISLKATTMEKMGFIGKQEGLLVQAHVSMRYKQKL 406
>ref|NP_223123.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZM19|ISDF_HELPJ IspD/ispF bifunctional enzyme [Includes: 2-C-methyl-D-erythritol
4-phosphate cytidylyltransferase
(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)
(MEP cytidylyltransferase) (MCT);
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
(MECPS) (MECD>
pir||G71936 hypothetical protein jhp0404 - Helicobacter pylori (strain J99)
gb|AAD05981.1| (AE001474) putative [Helicobacter pylori J99]
Length = 409
Score = 760 bits (1963), Expect = 0.0
Identities = 386/409 (94%), Positives = 398/409 (96%), Gaps = 3/409 (0%)
Query: 1 MSLIRVNGEAFKLSLESLEEDPFETKETLETL---IKQTSVVLLAAGESRRFSQTIKKQW 57
MSLIRVNGEAFKLSLESLEEDPFETKETLETL IKQTSVVLLAAGES+RFS+ IKKQW
Sbjct: 1 MSLIRVNGEAFKLSLESLEEDPFETKETLETLETLIKQTSVVLLAAGESKRFSRAIKKQW 60
Query: 58 LRSNHTPLWLSVYESFKEALDFKEIILVVSELDYIYIKRHYPEIKLVKGGASRQESVRNA 117
LRS+HTPLWLSVYESFKEALDFKE+ILVVSELDY+YI+RHYP+IKLVKGGASRQESVRNA
Sbjct: 61 LRSHHTPLWLSVYESFKEALDFKEVILVVSELDYVYIQRHYPKIKLVKGGASRQESVRNA 120
Query: 118 LKIIDSAYTLTSDVARGLANIEALKNLFLTLQQTSHYCIAPYLPCYDTAIYYNEALDREA 177
LK+IDS YT+TSDVARGLAN+EALK+LFLTLQQTSHYCIAPYLPCYDTAIYYNEALDREA
Sbjct: 121 LKVIDSTYTITSDVARGLANMEALKSLFLTLQQTSHYCIAPYLPCYDTAIYYNEALDREA 180
Query: 178 IKLIQTPQLSHTKALQSALNQGDFKDESSAILQAFPDRVSYIEGSKDLHKLTTSGDLKHF 237
IKLIQTPQLSHTK LQSALNQG FKDESSAILQAFP+ VSYIEGSKDLHKLTTSGDLK F
Sbjct: 181 IKLIQTPQLSHTKTLQSALNQGGFKDESSAILQAFPNSVSYIEGSKDLHKLTTSGDLKFF 240
Query: 238 TLFFNPAKDTFIGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGA 297
T FFNPAKDTFIGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGA
Sbjct: 241 TPFFNPAKDTFIGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGA 300
Query: 298 IKGGDIGEWFPDNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPA 357
IKGGDIGEWFPDNDPKYKNASSKELLKIVLDFSQSIGFEL EMGATIFSEIPKITPYKPA
Sbjct: 301 IKGGDIGEWFPDNDPKYKNASSKELLKIVLDFSQSIGFELLEMGATIFSEIPKITPYKPA 360
Query: 358 ILENLSQLLGLEKSQISLKATTMEKMGFIGKQEGLLVQAHVSMRYKQKL 406
ILENLSQLLGLEKSQISLKATTMEKMGFIGKQEGLLVQAHVSMRYKQKL
Sbjct: 361 ILENLSQLLGLEKSQISLKATTMEKMGFIGKQEGLLVQAHVSMRYKQKL 409
>ref|NP_282735.1| (NC_002163) hypothetical protein Cj1607 [Campylobacter jejuni]
sp|Q9PM68|ISDF_CAMJE IspD/ispF bifunctional enzyme [Includes: 2-C-methyl-D-erythritol
4-phosphate cytidylyltransferase
(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)
(MEP cytidylyltransferase) (MCT);
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
(MECPS) (MECD>
pir||E81256 hypothetical protein Cj1607 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73595.1| (AL139079) hypothetical protein Cj1607 [Campylobacter jejuni]
Length = 371
Score = 290 bits (741), Expect = 3e-77
Identities = 158/371 (42%), Positives = 237/371 (63%), Gaps = 7/371 (1%)
Query: 33 IKQTSVVLLAAGESRRFSQTIKKQWLRSNHTPLWLSVYESFKEALDFKEIILVVSELDYI 92
+ + S+++LAAG S RF+ +KKQ+LR + PLWL ++ FK+I++ S + Y+
Sbjct: 1 MSEMSLIMLAAGNSTRFNTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSNITYM 60
Query: 93 YIKRHYPEIKLVKGGASRQESVRNALKIIDSAYTLTSDVARGLANIEALKNLFLTLQQTS 152
K+ + ++GG +R ES++ AL++IDS + + SDVAR L + L L +
Sbjct: 61 --KKFTKNYEFIEGGDTRAESLKKALELIDSEFVMVSDVARVLVSKNLFDRLIENLDKAD 118
Query: 153 HYCIAPYLPCYDTAIYYNEALDREAIKLIQTPQLSHTKALQSALNQG-DFKDESSAILQA 211
CI P L DT ++ NEAL RE IKLIQTPQ+S TK L+ AL+Q +F D+S+AI A
Sbjct: 119 --CITPALKVADTTLFDNEALQREKIKLIQTPQISKTKLLKKALDQNLEFTDDSTAIA-A 175
Query: 212 FPDRVSYIEGSKDLHKLTTSGDLKHFTLFFNPAKDTFIGMGFDTHAFIKDKPMVLGGVVL 271
++ ++EG ++ KLT DLK L P+ + F G GFD H F +++P++L GV +
Sbjct: 176 MGGKIWFVEGEENARKLTFKEDLKKLDLP-TPSFEIFTGNGFDVHEFGENRPLLLAGVQI 234
Query: 272 DCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFPDNDPKYKNASSKELLKIVLDFSQ 331
GLKAHSDGD L H++ DAILGA GDIGE +PD D K+KNA+S ELLK D +
Sbjct: 235 HPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTDMKFKNANSMELLKQAYDKVR 294
Query: 332 SIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGLEKSQISLKATTMEKMGFIGKQEG 391
IGFEL + + ++ PK+ +K A+ N++ L L++ +I++KATT EK+GFIG++EG
Sbjct: 295 EIGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLDEFRINVKATTTEKLGFIGRKEG 354
Query: 392 LLVQAHVSMRY 402
+ V + V+++Y
Sbjct: 355 MAVLSSVNLKY 365
>ref|NP_420546.1| (NC_002696) conserved hypothetical protein [Caulobacter crescentus
CB15]
sp|Q9A7I5|ISDF_CAUCR IspD/ispF bifunctional enzyme [Includes: 2-C-methyl-D-erythritol
4-phosphate cytidylyltransferase
(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)
(MEP cytidylyltransferase) (MCT);
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
(MECPS) (MECD>
gb|AAK23714.1| (AE005847) conserved hypothetical protein [Caulobacter crescentus
CB15]
Length = 382
Score = 152 bits (384), Expect = 7e-36
Identities = 122/381 (32%), Positives = 185/381 (48%), Gaps = 23/381 (6%)
Query: 37 SVVLLAAGESRRFSQTIKKQWLRSNHTPLWLSVYESFKEALDFKEIILVVSELDYIYIKR 96
SVV++AAG R KQW P+ E+F A E+++V + ++ R
Sbjct: 4 SVVIVAAGSGTRAGPGQAKQWRVLAGRPVLRWSVEAFLAA-GAAEVVVVTTADGEAFLPR 62
Query: 97 HYPEI---KLVKGGASRQESVRNALKIID----SAYTLTSDVARG-------LANIEALK 142
+ + GGA+R SV+ L + + + D AR LA + AL
Sbjct: 63 MLEGLQGWRSTLGGATRALSVQAGLAALSERPGAEPVMIHDAARPFVSRNVILALLGALS 122
Query: 143 NLFLTLQQTSHYCIAPYLPCYDTAIYYNEALDREAIKLIQTPQLSHTKAL---QSALNQG 199
+ L L + P + A + + RE + QTPQ + L +A G
Sbjct: 123 DADLALPALAVADTLKRQPTGEAA----QTVSREHLWRAQTPQAARRDTLIAAYAAWTHG 178
Query: 200 DFKDESSAILQAFPDRVSYIEGSKDLHKLTTSGDLKHFTLFFNPAKDTFIGMGFDTHAFI 259
+ D++ +++A R++ G L KLT D A+ T +G GFD H +
Sbjct: 179 EPTDDAQ-VVEAAGGRIALTAGDPLLTKLTYPEDFAMAEHLAGVARVTRVGQGFDAHRWG 237
Query: 260 KDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFPDNDPKYKNASS 319
+ + L GV + + L HSD DA LHA+ DAILGAI GDIG+ FP DPK+K A+S
Sbjct: 238 PGEEVWLCGVAIKHDETLVGHSDADAGLHALTDAILGAIGEGDIGDHFPPTDPKWKGAAS 297
Query: 320 KELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGLEKSQISLKATT 379
+ LK +D + G L + T+ E PKI P++ A+ E L+++L + ++S+KATT
Sbjct: 298 DQFLKHAVDLVTAKGGALVNVDVTLICERPKIKPHRQAMRERLAEILSIPVDRVSVKATT 357
Query: 380 MEKMGFIGKQEGLLVQAHVSM 400
EKMGF G+ EGL A V++
Sbjct: 358 TEKMGFTGRGEGLAASAVVAV 378
>ref|NP_539780.1| (NC_003317) 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE
CYTIDYLYLTRANSFERASE / 2-C-METHYL-D-ERYTHRITOL
2,4-CYCLODIPHOSPHATE SYNTHASE (EC 2.-.-.-) [Brucella
melitensis]
sp|Q8YHD8|ISDF_BRUME IspD/ispF bifunctional enzyme [Includes: 2-C-methyl-D-erythritol
4-phosphate cytidylyltransferase
(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)
(MEP cytidylyltransferase) (MCT);
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
(MECPS) (MECD>
gb|AAL52044.1| (AE009527) 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLYLTRANSFERASE
/ 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE
(EC 2.-.-.-) [Brucella melitensis]
Length = 390
Score = 150 bits (379), Expect = 3e-35
Identities = 121/389 (31%), Positives = 181/389 (46%), Gaps = 32/389 (8%)
Query: 41 LAAGESRRFSQTIK--KQWLRSNHTPLWLSVYESFKEALDFKEIILVVSELDYIYIKRHY 98
+AAG R Q+ + KQ+ + +F + I +V+ D+ +R
Sbjct: 1 MAAGRGERAGQSAEGPKQYRLIGAEAVLARTLRAFTDCPLIGTIAVVIHPDDHALYRRAV 60
Query: 99 PE----IKLVKGGASRQESVRN---ALKIIDSAYTLTSDVARGLANIEALKNLFLTLQQT 151
PE + LV GG +RQES R ALK Y L D R + L+ + L T
Sbjct: 61 PEKHENVILVTGGPTRQESTRLGLLALKDEAPQYVLIHDGVRPFIGQDLLERIIANL--T 118
Query: 152 SHYCIAPYLPCYDTAI------YYNEALDREAIKLIQTPQL--------SHTKALQSALN 197
+ P L DT + R + QTPQ +H KA A+N
Sbjct: 119 PDNGVLPALAVSDTLKRAAADGMVETTISRTGLFAAQTPQAFPYAPILDAHEKAF--AIN 176
Query: 198 QGDFKDESSAILQAFPDRVSYIEGSKDLHKLTTSGDL----KHFTLFFNPAKDTFIGMGF 253
+ DF D++ AI + V IEGS D KLT + D+ K D G G+
Sbjct: 177 RTDFTDDA-AIAEWQEIAVRIIEGSADNTKLTWAKDIEMADKRLRQDHAVFPDIRTGNGY 235
Query: 254 DTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFPDNDPK 313
D H+F + L GV + E L HSD D LHA+ DA+L GDIG FP +DP+
Sbjct: 236 DVHSFEPGDHVTLCGVKIPHEAKLNGHSDADVALHALTDALLATRGAGDIGTHFPPSDPQ 295
Query: 314 YKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGLEKSQI 373
+K A+S+ ++ + G + + T+ SE PKI P++ A+ + L +LG+ ++
Sbjct: 296 WKGAASRIFIEHAAKIVREAGGRIANVDVTLISEAPKIGPHRAAMTQALCDMLGIAADRV 355
Query: 374 SLKATTMEKMGFIGKQEGLLVQAHVSMRY 402
S+KATT EK+GF+G++EG+ A ++ Y
Sbjct: 356 SIKATTNEKLGFVGRREGIAAIATATVIY 384
>sp|Q08113|ISDF_RHOCA IspD/ispF bifunctional enzyme [Includes: 2-C-methyl-D-erythritol
4-phosphate cytidylyltransferase
(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)
(MEP cytidylyltransferase) (MCT);
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
(MECPS) (MECD>
pir||S34980 hypothetical protein (nifR3 5' region) - Rhodobacter capsulatus
emb|CAA51072.1| (X72382) ORF2 [Rhodobacter capsulatus]
Length = 379
Score = 147 bits (372), Expect = 2e-34
Identities = 119/381 (31%), Positives = 183/381 (47%), Gaps = 25/381 (6%)
Query: 37 SVVLLAAGESRRFSQTIKKQWLRSNHTPLWLSVYESFKEALDFKEIILVVSELDYIYIKR 96
+V+++AAG R + + KQW P+ +F ILVV D + +
Sbjct: 4 AVIIVAAGRGTRAGEGLPKQWRDLAGRPVLAQTVAAFAGL----GRILVVLHPDDMGLGM 59
Query: 97 HY--PEIKLVKGGASRQESVRNALKII---DSAYTLTSDVARGLANIEALKNLFLTLQQT 151
+ LV GG++R ESV+NAL+ + D L D AR L + L+ T
Sbjct: 60 DLLGGSVVLVAGGSTRSESVKNALEALEGSDVTRVLIHDGARPLVPASVTAAVLAALETT 119
Query: 152 SHYCIAPYLPCYDTAIYYNEA------LDREAIKLIQTPQLSHTKALQSA--LNQGDFKD 203
AP L D A++ EA DRE + QTPQ + +A + G D
Sbjct: 120 PG--AAPALAVTD-ALWRGEAGLVAGTQDREGLYRAQTPQGFRFPEILAAHRAHPGGAAD 176
Query: 204 ESSAILQAFPDRVSYIEGSKDLHKLTTSGDLKHFTLFFNPAK----DTFIGMGFDTHAFI 259
+ A V+ + G +D K+T + D K D +G G+D HAF
Sbjct: 177 DVEVARHAGLS-VAIVPGHEDNLKITYAPDFARAEAILRERKGLTMDVRLGNGYDVHAFC 235
Query: 260 KDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFPDNDPKYKNASS 319
+ +VL GV + L HSD D +HA+ DAI GA+ GDIG FP +DP++K A+S
Sbjct: 236 EGDHVVLCGVKVPHVKALLGHSDADVGMHALTDAIYGALAEGDIGRHFPPSDPQWKGAAS 295
Query: 320 KELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGLEKSQISLKATT 379
L ++S GF + T+ E PK+ P+ A+ L++++ +E S++S+KATT
Sbjct: 296 WIFLDHAAKLAKSRGFRIGNADVTLICERPKVGPHAVAMAAELARIMEIEPSRVSVKATT 355
Query: 380 MEKMGFIGKQEGLLVQAHVSM 400
E++GF G++EG+ A V++
Sbjct: 356 SERLGFTGREEGIASIATVTL 376
>ref|NP_654035.1| (NC_003995) YgbB, YgbB family [Bacillus anthracis A2012] [Bacillus
anthracis str. A2012]
Length = 158
Score = 142 bits (359), Expect = 5e-33
Identities = 69/155 (44%), Positives = 102/155 (65%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
IG GFD H F + +P+++GG+ + E GL HSD D LLH + DA LGAI GDIG+ FP
Sbjct: 4 IGQGFDVHEFAEGRPLIIGGITIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKHFP 63
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
D DP +K+A S LL+ V +F + G+EL + TI ++ PK+ P+ ++ + +S+LL
Sbjct: 64 DTDPAFKDADSAVLLQKVWEFVREQGYELGNLDCTIIAQKPKMAPHIESMRKRISELLET 123
Query: 369 EKSQISLKATTMEKMGFIGKQEGLLVQAHVSMRYK 403
I++KATT EK+GF G++EG+ QA V ++ K
Sbjct: 124 SIDNINVKATTTEKLGFTGREEGIASQAVVLLQKK 158
>emb|CAB51895.1| (AJ009974) hypothetical protein [Zymomonas mobilis]
Length = 167
Score = 140 bits (352), Expect = 4e-32
Identities = 65/152 (42%), Positives = 100/152 (65%)
Query: 250 GMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFPD 309
G GFD H F ++LGG+ + + GL HSD D LHA+ DA+LGAI GDIG FP
Sbjct: 10 GSGFDVHCFEAGDHIMLGGIKIPHDHGLAGHSDADVALHALTDALLGAIADGDIGTHFPP 69
Query: 310 NDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGLE 369
+DP++K A+S + L+ + ++ G + T+ E PK+ PY+PA+ ++++Q+LGL
Sbjct: 70 SDPQWKGANSTQFLEYAVALAKKAGAIIDHADVTVICEAPKVGPYRPAMRKHIAQILGLP 129
Query: 370 KSQISLKATTMEKMGFIGKQEGLLVQAHVSMR 401
+ ++S+KATT EK+GF G++EG+ QA S+R
Sbjct: 130 EQRVSIKATTTEKLGFTGRKEGIAAQAVTSIR 161
>ref|NP_563232.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
sp|Q8XI08|ISPF_CLOPE 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS)
(MECDP-synthase)
dbj|BAB82022.1| (AP003193) conserved hypothetical protein [Clostridium perfringens]
Length = 156
Score = 138 bits (347), Expect = 1e-31
Identities = 65/148 (43%), Positives = 100/148 (66%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
IGMG+D H ++++ ++LGGV + E GL HSD D LLHA++D++LGA GDIG+ FP
Sbjct: 3 IGMGYDVHKLVENRDLILGGVKIPYEKGLLGHSDADVLLHAIMDSLLGAAALGDIGKHFP 62
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
D DPKYK A S +LL+ V + +++ + ATI ++ PK+ P+ P + EN+++ L +
Sbjct: 63 DTDPKYKGADSIKLLEFVGELLNKNNYKISNIDATIIAQRPKMAPHIPTMRENIAKALNI 122
Query: 369 EKSQISLKATTMEKMGFIGKQEGLLVQA 396
+ QI++KATT E +GF G EG+ Q+
Sbjct: 123 DLDQINVKATTEEGLGFTGSGEGISSQS 150
>sp|Q9RNZ1|ISDF_ZYMMO IspD/ispF bifunctional enzyme [Includes: 2-C-methyl-D-erythritol
4-phosphate cytidylyltransferase
(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)
(MEP cytidylyltransferase) (MCT);
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
(MECPS) (MECD>
gb|AAD53897.1|AF176314_7 (AF176314) unknown [Zymomonas mobilis]
Length = 387
Score = 136 bits (343), Expect = 4e-31
Identities = 92/297 (30%), Positives = 140/297 (46%), Gaps = 9/297 (3%)
Query: 104 VKGGASRQESVRNALKII-DSAY--TLTSDVARGLANIEALKNLFLTLQQTSHYCIAPYL 160
V GG R++SV N LK D Y L D AR + L L+ + P L
Sbjct: 78 VIGGVFRRDSVINGLKAAHDRGYKRVLIHDAARPFLPKTVIDRLLDALKSSK--AAIPVL 135
Query: 161 PCYDTAIYYN-EALDREAIKLIQTPQ---LSHTKALQSALNQGDFKDESSAILQAFPDRV 216
P DT + EA+DR +QTPQ L A A D + + +++AF ++
Sbjct: 136 PVVDTLVNQEVEAVDRNLFHRVQTPQAFDLETVIAAHQAWTGSDEPTDDAQVVRAFGKKI 195
Query: 217 SYIEGSKDLHKLTTSGDLKHFTLFFNPAKDTFIGMGFDTHAFIKDKPMVLGGVVLDCEFG 276
+ + G + L KLT D + G GFD H F ++LGG+ + + G
Sbjct: 196 ALVTGDRLLEKLTYPADFSVAEAQMTEKMISVCGSGFDVHCFEAGDHIMLGGIKIPHDHG 255
Query: 277 LKAHSDGDALLHAVIDAILGAIKGGDIGEWFPDNDPKYKNASSKELLKIVLDFSQSIGFE 336
L HSD D LHA+ DA+LGAI GDIG FP +DP++K A+S + L+ + ++ G
Sbjct: 256 LAGHSDADVALHALTDALLGAIADGDIGTHFPPSDPQWKGANSTQFLEYAVALAKKAGAI 315
Query: 337 LFEMGATIFSEIPKITPYKPAILENLSQLLGLEKSQISLKATTMEKMGFIGKQEGLL 393
+ T+ E PK+ PY+PA+ + L + G + K ++ + ++G L
Sbjct: 316 IDHADVTVICEAPKVGPYRPAMRKILPRFWGFLNKGSASKQRQLKSLVLQAAKKGSL 372
>ref|NP_102198.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
sp|Q98MX9|ISDF_RHILO IspD/ispF bifunctional enzyme [Includes: 2-C-methyl-D-erythritol
4-phosphate cytidylyltransferase
(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)
(MEP cytidylyltransferase) (MCT);
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
(MECPS) (MECD>
dbj|BAB47984.1| (AP002994) hypothetical protein [Mesorhizobium loti]
Length = 407
Score = 136 bits (343), Expect = 4e-31
Identities = 114/390 (29%), Positives = 177/390 (45%), Gaps = 31/390 (7%)
Query: 37 SVVLLAAGESRRFSQTI-KKQWLRSNHTPLWLSVYESFKEALDFKEIILVVSELDYIYIK 95
+VV++AAG R Q KQ+ + E F I++ + D+ +
Sbjct: 15 AVVIVAAGRGARAGQANGPKQYQNIGGRAVIAHTLEIFLAHPRTDRIVVAIHADDHELFR 74
Query: 96 R----HYPEIKLVKGGASRQESVRN---ALKIIDSAYTLTSDVARGLANIEALKNLFLTL 148
+ + + GG +RQESVR ALK L D R + + + +
Sbjct: 75 QAAGSQAERVTAIIGGPTRQESVRLGLLALKEHAPGQVLIHDAVRPFVDADLIDRTISAI 134
Query: 149 QQTSHYCIAPYLPCYDT------AIYYNEALDREAIKLIQTPQ--------LSHTKALQS 194
+ P LP DT A E + R + QTPQ +H KA Q
Sbjct: 135 GENEG--ALPALPVADTLKRESAAGVVAETVSRSGLHAAQTPQGFPYGPILAAHDKAFQ- 191
Query: 195 ALNQGDFKDESSAILQAFPDRVSYIEGSKDLHKLTTSGDLKHFTLFFNPAKDTF----IG 250
L + DF D++ AI + V + GS D KLT + D+ + + F G
Sbjct: 192 -LGRLDFTDDA-AIAEWAHIPVKLVPGSPDNVKLTWARDIAMAHQRLSSERTHFPDIRTG 249
Query: 251 MGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFPDN 310
G+D HAF + L GV + + L HSD D LHA+ DA+L GDIG FP +
Sbjct: 250 NGYDVHAFEPGDHVTLCGVAIPHDKKLSGHSDADVGLHALTDALLATCGAGDIGTHFPPS 309
Query: 311 DPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGLEK 370
DP++K A+S+ ++ + G + T+ E P++ P++ A+ LS++LG+
Sbjct: 310 DPQWKGAASRIFVEHAAKVVRQRGGRIANADITLICEAPRVGPHREAMTAALSRMLGISA 369
Query: 371 SQISLKATTMEKMGFIGKQEGLLVQAHVSM 400
+IS+KATT EK+GF+G++EG+ A S+
Sbjct: 370 DRISIKATTNEKLGFVGREEGIAAIATASV 399
>ref|NP_230180.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
sp|Q9KUJ1|ISPF_VIBCH 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS)
(MECDP-synthase)
pir||D82311 conserved hypothetical protein VC0529 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF93697.1| (AE004139) conserved hypothetical protein [Vibrio cholerae]
Length = 158
Score = 136 bits (343), Expect = 4e-31
Identities = 71/153 (46%), Positives = 99/153 (64%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
IG GFD H F + P+++GGV + E GL AHSDGD LHA+ DA+LGAI GDIG FP
Sbjct: 4 IGHGFDVHRFGGEGPIIIGGVKIPYEQGLIAHSDGDVALHALSDALLGAIAAGDIGRHFP 63
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
D D K+K A S+ELLK V ++ G+ L TI ++ PK+ PY A+ +++ L
Sbjct: 64 DTDDKWKGADSRELLKDVYRRVKAQGYVLGNADVTIIAQAPKMAPYIQAMCAAIAEDLET 123
Query: 369 EKSQISLKATTMEKMGFIGKQEGLLVQAHVSMR 401
+ I++KATT EK+GF G++EG+ +A V +R
Sbjct: 124 DLGNINVKATTTEKLGFTGRKEGIACEAVVLLR 156
>ref|NP_240974.1| (NC_002570) BH0108~unknown conserved protein [Bacillus halodurans]
sp|Q9KGF7|ISPF_BACHD 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS)
(MECDP-synthase)
dbj|BAB03827.1| (AP001507) BH0108~unknown conserved protein [Bacillus halodurans]
Length = 157
Score = 136 bits (342), Expect = 5e-31
Identities = 65/148 (43%), Positives = 97/148 (64%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
+G GFD H F + + +++GGV + E GL HSD D LLH + DA LGAI GDIG+ FP
Sbjct: 4 VGQGFDVHQFAEGRLLIIGGVEIPYEKGLLGHSDADVLLHTIADAALGAIGEGDIGKHFP 63
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
D DP +K+A S +LL V + + G+ L + TI ++ PK+ P+ PA+ +++LL
Sbjct: 64 DTDPHFKDADSAKLLSAVWELVKEKGYTLGNVDCTIIAQKPKMAPHIPAMRARIAELLEA 123
Query: 369 EKSQISLKATTMEKMGFIGKQEGLLVQA 396
E++Q+++KATT E +GF G+ EG+ QA
Sbjct: 124 EEAQVNVKATTTETLGFTGRGEGIASQA 151
>ref|NP_354449.1| (NC_003062) AGR_C_2659p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_532133.1| (NC_003304) ISPD/ISPF bifunctional enzyme [Agrobacterium
tumefaciens str. C58 (U. Washington)]
sp|Q8UFF4|ISDF_AGRT5 IspD/ispF bifunctional enzyme [Includes: 2-C-methyl-D-erythritol
4-phosphate cytidylyltransferase
(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)
(MEP cytidylyltransferase) (MCT);
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
(MECPS) (MECD>
gb|AAK87234.1| (AE008069) AGR_C_2659p [Agrobacterium tumefaciens str. C58
(Cereon)]
gb|AAL42449.1| (AE009104) ISPD/ISPF bifunctional enzyme [Agrobacterium tumefaciens
str. C58 (U. Washington)]
Length = 400
Score = 135 bits (341), Expect = 7e-31
Identities = 99/318 (31%), Positives = 159/318 (49%), Gaps = 17/318 (5%)
Query: 101 IKLVKGGASRQESVRNALKIIDS---AYTLTSDVARGLANIEALKNLFLTLQQTSHYCIA 157
I V GGA+RQ+SV L+ + S + + D R + L+ + L + +
Sbjct: 81 ITTVTGGATRQQSVLAGLEALSSHGLTHVMIHDAVRPFVAADMLERI-AALHRAGAGGVL 139
Query: 158 PYLPCYDTAIY-----YNEALDREAIKLIQTPQ-LSHTKALQS-----ALNQGDFKDESS 206
P LP DT E + R+ + QTPQ S++ L + A + DF D++S
Sbjct: 140 PALPVTDTLKRGLEDRVVETVSRQGLYAAQTPQSFSYSDILDAHRAAAASGKTDFTDDAS 199
Query: 207 AILQAFPDRVSYIEGSKDLHKLTTSGDLKHFTLFFNPA-KDTFIGMGFDTHAFIKDKPMV 265
I + V+ EGS D KLT D+ + A D G G+D H +
Sbjct: 200 -IAEWTGLTVTLTEGSVDNVKLTLKRDIAMADEKLSHALPDVRTGNGYDVHQLEAGDGVT 258
Query: 266 LGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFPDNDPKYKNASSKELLKI 325
L G+ ++ + LK HSD D LHA+ DA+L GDIG+ FP +DP++K A+S+ L+
Sbjct: 259 LCGIFIEHDQRLKGHSDADVALHALTDALLATCGAGDIGDHFPPSDPQWKGAASRIFLEH 318
Query: 326 VLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGLEKSQISLKATTMEKMGF 385
+ G + ++ +E P+I P++ A+ E LS +LG+ + S+KATT E +GF
Sbjct: 319 AAKVVRDNGGTIMNADVSLIAEAPRIGPHRQAMREALSDMLGIALERCSVKATTNETIGF 378
Query: 386 IGKQEGLLVQAHVSMRYK 403
+G++EG+ A ++ Y+
Sbjct: 379 VGRREGIAAIATATVVYQ 396
>ref|NP_463767.1| (NC_003210) similar to B. subtilis YacN protein [Listeria
monocytogenes EGD-e]
sp|Q8YAB4|ISPF_LISMO 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS)
(MECDP-synthase)
emb|CAD00763.1| (AL591974) similar to B. subtilis YacN protein [Listeria
monocytogenes]
Length = 157
Score = 135 bits (341), Expect = 7e-31
Identities = 65/144 (45%), Positives = 95/144 (65%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
IG G+D H D+ +++GGV + E GL HSD D LLHA+ DAI+GAI GDIG +FP
Sbjct: 4 IGQGYDVHKLAYDRDLIIGGVKIPYEKGLLGHSDADVLLHAITDAIIGAIGAGDIGHFFP 63
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
D D +K+A S ELL + ++ GF L + ATI +E PK+ PY + +++LL
Sbjct: 64 DTDMVFKDADSAELLAEIWQKVEADGFRLGNLDATIIAEKPKMAPYVEQMKLRIAELLHA 123
Query: 369 EKSQISLKATTMEKMGFIGKQEGL 392
+ +Q+++KATT EK+GF G++EG+
Sbjct: 124 DSAQVNVKATTTEKLGFTGREEGI 147
>ref|NP_469613.1| (NC_003212) similar to B. subtilis YacN protein [Listeria innocua]
sp|Q92F39|ISPF_LISIN 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS)
(MECDP-synthase)
emb|CAC95501.1| (AL596164) similar to B. subtilis YacN protein [Listeria innocua]
Length = 157
Score = 135 bits (340), Expect = 9e-31
Identities = 66/144 (45%), Positives = 95/144 (65%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
IG G+D H D+ +++GG+ + E GL HSD D LLHA+ DAI+GAI DIG +FP
Sbjct: 4 IGQGYDVHKLDYDRELIIGGIKIPYEKGLLGHSDADVLLHAITDAIIGAIGALDIGHFFP 63
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
D D YK+A S ELL + ++ GF+L + ATI +E PK+ PY + +++LL
Sbjct: 64 DTDMAYKDADSAELLAEIWRQVEAEGFKLGNLDATIIAEKPKMAPYVELMKRRIAELLHA 123
Query: 369 EKSQISLKATTMEKMGFIGKQEGL 392
E SQ+++KATT EK+GF G++EG+
Sbjct: 124 EPSQVNVKATTTEKLGFTGREEGI 147
>ref|NP_438831.1| (NC_000907) conserved hypothetical protein [Haemophilus influenzae
Rd]
sp|P44815|ISPF_HAEIN 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS)
(MECDP-synthase)
pir||F64156 hypothetical protein HI0671 - Haemophilus influenzae (strain Rd
KW20)
gb|AAC22331.1| (U32750) conserved hypothetical protein [Haemophilus influenzae Rd]
Length = 158
Score = 135 bits (340), Expect = 9e-31
Identities = 67/148 (45%), Positives = 98/148 (65%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
IG GFD HAF +D+P+++GGV + G AHSDGD LHA+ DAILGA GDIG+ FP
Sbjct: 4 IGHGFDVHAFGEDRPLIIGGVEVPYHTGFIAHSDGDVALHALTDAILGAAALGDIGKLFP 63
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
D D +YKNA S+ LL+ Q G+++ + TI ++ PK+ P+ A+ +++ L
Sbjct: 64 DTDMQYKNADSRGLLREAFRQVQEKGYKIGNVDITIIAQAPKMRPHIDAMRAKIAEDLQC 123
Query: 369 EKSQISLKATTMEKMGFIGKQEGLLVQA 396
+ Q+++KATT EK+GF G+QEG+ +A
Sbjct: 124 DIEQVNVKATTTEKLGFTGRQEGIACEA 151
>ref|NP_387972.1| (NC_000964) similar to hypothetical proteins [Bacillus subtilis]
sp|Q06756|ISPF_BACSU 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS)
(MECDP-synthase)
pir||S66120 hypothetical protein - Bacillus subtilis
pir||F69741 gltX 5'-region conserved hypothetical protein yacN - Bacillus
subtilis
gb|AAA21795.1| (L14580) unknown [Bacillus subtilis]
dbj|BAA05325.1| (D26185) unknown [Bacillus subtilis]
emb|CAB11867.1| (Z99104) similar to hypothetical proteins [Bacillus subtilis]
Length = 158
Score = 134 bits (337), Expect = 2e-30
Identities = 65/150 (43%), Positives = 98/150 (65%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
IG GFD H ++ +P+++GG+ + E GL HSD D LLH V DA LGA+ GDIG+ FP
Sbjct: 4 IGQGFDVHQLVEGRPLIIGGIEIPYEKGLLGHSDADVLLHTVADACLGAVGEGDIGKHFP 63
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
D DP++K+A S +LL+ V + G+ L + TI ++ PK+ PY + + +++ L
Sbjct: 64 DTDPEFKDADSFKLLQHVWGIVKQKGYVLGNIDCTIIAQKPKMLPYIEDMRKRIAEGLEA 123
Query: 369 EKSQISLKATTMEKMGFIGKQEGLLVQAHV 398
+ SQ+++KATT EK+GF G+ EG+ QA V
Sbjct: 124 DVSQVNVKATTTEKLGFTGRAEGIAAQATV 153
>ref|NP_623857.1| (NC_003869) 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[Thermoanaerobacter tengcongensis]
gb|AAM25461.1| (AE013174) 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[Thermoanaerobacter tengcongensis]
Length = 160
Score = 134 bits (337), Expect = 2e-30
Identities = 69/150 (46%), Positives = 99/150 (66%), Gaps = 1/150 (0%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
+G+G+D H F + K ++LGG+ + E GLK HSDGD L+HA+ID ILGA GDIGE FP
Sbjct: 6 VGIGYDVHRFEEGKKLMLGGIEIPFEKGLKGHSDGDVLIHALIDGILGAAGLGDIGEHFP 65
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
D D YK SK LLK VL+ S + + + + +E PK++PYK I +L++LLG+
Sbjct: 66 DTDVAYKEVDSKILLKRVLEL-VSEHYVVNNVDCIVVTERPKLSPYKDRIRTSLAELLGV 124
Query: 369 EKSQISLKATTMEKMGFIGKQEGLLVQAHV 398
K ++++KA T E +GF G++EG+ A V
Sbjct: 125 SKERVNVKAKTEEGLGFTGREEGIKAYAVV 154
>ref|NP_213652.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
sp|O67089|ISPF_AQUAE 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS)
(MECDP-synthase)
pir||F70382 conserved hypothetical protein aq_957 - Aquifex aeolicus
gb|AAC07056.1| (AE000715) hypothetical protein [Aquifex aeolicus]
Length = 156
Score = 134 bits (337), Expect = 2e-30
Identities = 66/133 (49%), Positives = 91/133 (67%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
IG GFD+H F++ K ++LGGV ++ ++GLK HSDGDALLHA+ DAILGA+ DIGE F
Sbjct: 5 IGFGFDSHEFVEGKLLILGGVEIEKDYGLKGHSDGDALLHAITDAILGALGERDIGEIFK 64
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
D DP++KNA S+ L+ L+ GF + + I ++ PKI P+K I E+LS+LLG+
Sbjct: 65 DTDPRWKNAPSRIFLEKALEVMSEKGFNISNIDCVIVADRPKIAPHKERIKESLSKLLGI 124
Query: 369 EKSQISLKATTME 381
K +ISLK E
Sbjct: 125 PKERISLKGKRRE 137
>ref|NP_461850.1| (NC_003197) 2C-methyl-d-erythritol-2,4-cyclodiphosphate synthase
[Salmonella typhimurium LT2]
sp|Q8ZMF7|ISPF_SALTY 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS)
(MECDP-synthase)
gb|AAL21809.1| (AE008833) 2C-methyl-d-erythritol-2,4-cyclodiphosphate synthase
[Salmonella typhimurium LT2]
Length = 159
Score = 134 bits (336), Expect = 3e-30
Identities = 67/148 (45%), Positives = 97/148 (65%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
IG GFD HAF + P+++GGV + E GL AHSDGD LHA+ DA+LGA GDIG+ FP
Sbjct: 3 IGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFP 62
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
D DP +K A S+ELL+ Q+ G+ L + TI ++ PK+ P+ P + +++ LG
Sbjct: 63 DTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGC 122
Query: 369 EKSQISLKATTMEKMGFIGKQEGLLVQA 396
++++KATT EK+GF G+ EG+ +A
Sbjct: 123 HMDEVNVKATTTEKLGFTGRGEGIACEA 150
>ref|NP_662484.1| (NC_002932) 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[Chlorobium tepidum TLS]
gb|AAM72826.1| (AE012915) 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[Chlorobium tepidum TLS]
Length = 157
Score = 134 bits (336), Expect = 3e-30
Identities = 65/148 (43%), Positives = 93/148 (61%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
IG+G D H F + + +++GGV + GL HSD D LLHA+ DA+LGA GDIG+ FP
Sbjct: 3 IGIGIDVHQFAEGRKLIIGGVEVPSPIGLLGHSDADVLLHAISDALLGAAALGDIGKHFP 62
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
D P YK+A S ELL+ V + G++ + + E PKI PY + N+++ LGL
Sbjct: 63 DTSPDYKDADSMELLRHVCKLLEQEGYKPVNVDTMLLLEKPKIAPYIDQMRRNIARCLGL 122
Query: 369 EKSQISLKATTMEKMGFIGKQEGLLVQA 396
E + +S+KATT EK+G++G+QEG A
Sbjct: 123 EINAVSVKATTNEKLGYVGRQEGACAHA 150
>ref|NP_457318.1| (NC_003198) 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[Salmonella enterica subsp. enterica serovar Typhi]
sp|Q8Z472|ISPF_SALTI 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS)
(MECDP-synthase)
emb|CAD06035.1| (AL627276) 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[Salmonella enterica subsp. enterica serovar Typhi]
Length = 159
Score = 133 bits (334), Expect = 4e-30
Identities = 67/148 (45%), Positives = 96/148 (64%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
IG GFD HAF + P+++GGV + E GL AHSDGD LHA+ DA+LGA GDIG+ FP
Sbjct: 3 IGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFP 62
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
D DP +K A S+ELL+ Q+ G+ L + TI ++ PK+ P+ P + +++ LG
Sbjct: 63 DTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGC 122
Query: 369 EKSQISLKATTMEKMGFIGKQEGLLVQA 396
+++KATT EK+GF G+ EG+ +A
Sbjct: 123 HMDDVNVKATTTEKLGFTGRGEGIACEA 150
>ref|NP_564819.1| (NM_105070) expressed protein [Arabidopsis thaliana]
gb|AAG52445.1|AC010852_2 (AC010852) unknown protein; 376-1789 [Arabidopsis thaliana]
gb|AAK43969.1|AF370154_1 (AF370154) unknown protein [Arabidopsis thaliana]
gb|AAL15202.1| (AY059096) unknown protein [Arabidopsis thaliana]
Length = 231
Score = 133 bits (334), Expect = 4e-30
Identities = 80/220 (36%), Positives = 122/220 (55%), Gaps = 8/220 (3%)
Query: 185 QLSHTKALQSALNQGDFKDESSAILQAFPDR-VSYIEGSKDLHKLTTSGDLKHFTLFFNP 243
Q++ L A G ++ + S L P VS + D+++ TS + TL F
Sbjct: 19 QITKKPFLLPATKIGVWRPKKSLSLSCRPSASVSAASSAVDVNESVTS-EKPTKTLPFR- 76
Query: 244 AKDTFIGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDI 303
IG GFD H P+++GG+V+ + G +AHSDGD LLH V+DAILGA+ DI
Sbjct: 77 -----IGHGFDLHRLEPGYPLIIGGIVIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDI 131
Query: 304 GEWFPDNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLS 363
G+ FPD+DPK+K A+S +K + G+E+ + AT+ + PKI+P+K I NLS
Sbjct: 132 GQIFPDSDPKWKGAASSVFIKEAVRLMDEAGYEIGNLDATLILQRPKISPHKETIRSNLS 191
Query: 364 QLLGLEKSQISLKATTMEKMGFIGKQEGLLVQAHVSMRYK 403
+LLG + S ++LKA T EK+ +G+ + + + K
Sbjct: 192 KLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 231
>ref|NP_289295.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
ref|NP_311627.1| (NC_002695) 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[Escherichia coli O157:H7]
ref|NP_417226.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
sp|P36663|ISPF_ECOLI 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS)
(MECDP-synthase)
pir||I55083 hypothetical 16.9K protein (surE-cysC intergenic region) -
Escherichia coli
pdb|1JY8|A Chain A, 2c-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase
(Ispf)
gb|AAA79837.1| (L07942) ORF0 [Escherichia coli]
gb|AAA69256.1| (U29579) alternate gene name ygbB; ORF0 of L07942; ORF_f159
[Escherichia coli]
gb|AAC75788.1| (AE000358) orf, hypothetical protein [Escherichia coli K12]
gb|AAF44656.1|AF230738_1 (AF230738) 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[Escherichia coli]
dbj|BAA95145.1| (AB038256) 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[Escherichia coli]
gb|AAG57853.1|AE005502_7 (AE005502) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
dbj|BAB37023.1| (AP002562) 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[Escherichia coli O157:H7]
Length = 159
Score = 133 bits (334), Expect = 4e-30
Identities = 67/148 (45%), Positives = 96/148 (64%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
IG GFD HAF + P+++GGV + E GL AHSDGD LHA+ DA+LGA GDIG+ FP
Sbjct: 3 IGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFP 62
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
D DP +K A S+ELL+ Q+ G+ L + TI ++ PK+ P+ P + +++ LG
Sbjct: 63 DTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGC 122
Query: 369 EKSQISLKATTMEKMGFIGKQEGLLVQA 396
+++KATT EK+GF G+ EG+ +A
Sbjct: 123 HMDDVNVKATTTEKLGFTGRGEGIACEA 150
>ref|NP_385562.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
sp|Q92Q90|ISDF_RHIME IspD/ispF bifunctional enzyme [Includes: 2-C-methyl-D-erythritol
4-phosphate cytidylyltransferase
(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)
(MEP cytidylyltransferase) (MCT);
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
(MECPS) (MECD>
emb|CAC46035.1| (AL591787) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
Length = 434
Score = 133 bits (334), Expect = 4e-30
Identities = 114/395 (28%), Positives = 181/395 (44%), Gaps = 31/395 (7%)
Query: 38 VVLLAAGESRRFSQTIK--KQWLRSNHTPLWLSVYESFKEALDFKEIILVV----SELDY 91
VV++AAG R Q+ + KQ+ P+ + F +++V+ EL
Sbjct: 35 VVIVAAGRGERAGQSAEGPKQYRTIGDRPVIAHTLDIFATWPGAGPVVVVIHPDDEELFA 94
Query: 92 IYIKRHYP--EIKLVKGGASRQESVRNALKIIDSA---YTLTSDVARGLANIEALKNLFL 146
KR E+ +V GGA+RQ SV L+ + + Y + D R + L
Sbjct: 95 AARKRMAGALELTVVHGGATRQLSVLAGLEAVAATGVEYVMIHDAVRPFFDHTLLDRCGA 154
Query: 147 TLQQTSHYCIAPYLPCYDT------AIYYNEALDREAIKLIQTPQLSHTKALQSA----- 195
L+ + + P + DT A E + R + QTPQ + + SA
Sbjct: 155 ALRDGAQ-ALLPAIAVADTLKRTKAAGLVAETVPRTDLYAAQTPQCFRLEPILSAHRRAA 213
Query: 196 -LNQGDFKDESSAILQAFPDRVSYIEGSKDLHKLTTSGDL----KHFTLFFNPAKDTFIG 250
+ DF D++S I + V +EG+ D KLT DL + T P D G
Sbjct: 214 ASGRSDFTDDAS-IAEWAGIPVLLVEGAVDNFKLTLRRDLSMADEKLTRMAIP--DVRTG 270
Query: 251 MGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFPDN 310
G+D H + + L GV + L HSD D LHA+ DA+L GDIG+ FP +
Sbjct: 271 NGYDVHQLVDGDGVTLCGVFIPHGRKLSGHSDADVALHALTDALLATCGAGDIGDHFPPS 330
Query: 311 DPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGLEK 370
DP++K A S+ L+ + G + ++ +E PK+ P++ + ENL+ +LG+
Sbjct: 331 DPQWKGAPSRIFLEHAARIVRERGGTVTNADISLIAEAPKVGPHRQQMRENLAAILGISL 390
Query: 371 SQISLKATTMEKMGFIGKQEGLLVQAHVSMRYKQK 405
+ S+KATT EK+GF+G+ EG+ A ++ Y +
Sbjct: 391 DRCSIKATTNEKLGFVGRNEGIAAIATATVVYASR 425
>pdb|1GX1|A Chain A, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
pdb|1GX1|B Chain B, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
pdb|1GX1|C Chain C, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
Length = 160
Score = 131 bits (330), Expect = 1e-29
Identities = 67/148 (45%), Positives = 94/148 (63%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
IG GFD HAF + P+++GGV + E GL AHSDGD LHA+ DA+LGA GDIG+ FP
Sbjct: 4 IGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFP 63
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
D DP +K A S+ELL+ Q+ G+ L + TI ++ PK P+ P +++ LG
Sbjct: 64 DTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKXLPHIPQXRVFIAEDLGC 123
Query: 369 EKSQISLKATTMEKMGFIGKQEGLLVQA 396
+++KATT EK+GF G+ EG+ +A
Sbjct: 124 HXDDVNVKATTTEKLGFTGRGEGIACEA 151
>ref|NP_240231.1| (NC_002528) hypothetical protein [Buchnera sp. APS]
sp|P57494|ISPF_BUCAI 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS)
(MECDP-synthase)
dbj|BAB13117.1| (AP001119) hypothetical protein [Buchnera sp. APS]
Length = 161
Score = 131 bits (329), Expect = 2e-29
Identities = 68/157 (43%), Positives = 101/157 (64%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
IG GFD HAF KP+++GGV++ CE GL AHS+GD L+H++IDA+LGA GDIG +FP
Sbjct: 3 IGYGFDLHAFGSTKPLIIGGVLIPCEKGLIAHSNGDLLIHSLIDALLGATAMGDIGSFFP 62
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
N+ YKN S+ LLK + + + +++ + TI +E PK+ PY + NLS L
Sbjct: 63 SNNYIYKNIDSRILLKKIWNKIILLNYDICNIDITIIAEYPKMLPYIFFMRSNLSLDLNT 122
Query: 369 EKSQISLKATTMEKMGFIGKQEGLLVQAHVSMRYKQK 405
E IS+K+TT +K+G IG++E + + V + +K
Sbjct: 123 EIDNISIKSTTSKKIGCIGRKEAIACHSIVMLIKNKK 159
>gb|AAM62786.1| (AY085564) 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[Arabidopsis thaliana]
Length = 231
Score = 130 bits (328), Expect = 2e-29
Identities = 79/220 (35%), Positives = 121/220 (54%), Gaps = 8/220 (3%)
Query: 185 QLSHTKALQSALNQGDFKDESSAILQAFPDR-VSYIEGSKDLHKLTTSGDLKHFTLFFNP 243
Q++ L A G ++ + S L P VS + D+++ TS + TL F
Sbjct: 19 QITKKPFLLPATKIGVWRPKKSLSLSCRPSASVSAASSAVDVNESVTS-EKPTKTLPFR- 76
Query: 244 AKDTFIGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDI 303
IG GFD H P+++GG+ + + G +AHSDGD LLH V+DAILGA+ DI
Sbjct: 77 -----IGHGFDLHRLEPGYPLIIGGIDIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDI 131
Query: 304 GEWFPDNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLS 363
G+ FPD+DPK+K A+S +K + G+E+ + AT+ + PKI+P+K I NLS
Sbjct: 132 GQIFPDSDPKWKGAASSVFIKEAVRLMDEAGYEIANLDATLILQRPKISPHKETIRSNLS 191
Query: 364 QLLGLEKSQISLKATTMEKMGFIGKQEGLLVQAHVSMRYK 403
+LLG + S ++LKA T EK+ +G+ + + + K
Sbjct: 192 KLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 231
>ref|NP_519765.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
sp|Q8XYW2|ISPF_RALSO 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS)
(MECDP-synthase)
emb|CAD15346.1| (AL646065) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
Length = 168
Score = 130 bits (327), Expect = 3e-29
Identities = 62/153 (40%), Positives = 98/153 (63%)
Query: 246 DTFIGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGE 305
D IG G+D HA ++ + ++LGGV + GL HSD DALLHA+ DA+ GA GDIG
Sbjct: 5 DIRIGQGYDVHALVEGRKLILGGVEIPHTRGLLGHSDADALLHAITDALFGAAGLGDIGR 64
Query: 306 WFPDNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQL 365
FPD DP + A S+ LL+ + + G+++ + AT+ ++ PK+ P+ P ++ NL+
Sbjct: 65 HFPDTDPAFAGADSRVLLREAVRRVREAGYDVGNVDATVIAQKPKLAPHVPGMVANLAAD 124
Query: 366 LGLEKSQISLKATTMEKMGFIGKQEGLLVQAHV 398
LG+ + ++KA T EK+GF G+++G++ QA V
Sbjct: 125 LGIAPGRCNVKAKTNEKLGFEGREDGIVAQAAV 157
>ref|NP_246548.1| (NC_002663) unknown [Pasteurella multocida]
sp|P57954|ISPF_PASMU 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS)
(MECDP-synthase)
gb|AAK03693.1| (AE006198) unknown [Pasteurella multocida]
Length = 158
Score = 130 bits (327), Expect = 3e-29
Identities = 64/148 (43%), Positives = 98/148 (65%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
IG GFD HAF + P+++GGV + E GL AHSDGD LHA+ DA+LGA+ GDIG+ FP
Sbjct: 4 IGHGFDVHAFGGEGPIIIGGVAIPYEKGLLAHSDGDVALHALTDALLGAVALGDIGKLFP 63
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
D D +YK A S+ LL+ Q+ G+++ + TI ++ PK+ P+ A+ +++ L
Sbjct: 64 DTDMQYKGADSRGLLREAYTQVQAKGYKVGNVDVTIIAQAPKMRPHIDAMRAAIAEDLAC 123
Query: 369 EKSQISLKATTMEKMGFIGKQEGLLVQA 396
+ Q+++KATT E++GF G+ EG+ +A
Sbjct: 124 DIEQVNVKATTSERLGFTGRGEGIACEA 151
>ref|NP_347074.1| (NC_003030) Putative enzyme of deoxyxylulose pathway (terpenoid
biosinthesis), YgbB family, similar to yacN B.subtilis
[Clostridium acetobutylicum]
sp|Q97LX0|ISPF_CLOAB 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS)
(MECDP-synthase)
gb|AAK78414.1|AE007558_4 (AE007558) Putative enzyme of deoxyxylulose pathway (terpenoid
biosinthesis), YgbB family, similar to yacN B.subtilis
[Clostridium acetobutylicum]
Length = 155
Score = 129 bits (323), Expect = 8e-29
Identities = 63/148 (42%), Positives = 99/148 (66%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
+G+G+D H ++++ ++LGGV + GL HSD D L+HA+ID+ILGA GDIG+ FP
Sbjct: 3 VGIGYDVHKLVENRKLILGGVEIQYSKGLLGHSDADVLVHAIIDSILGAAGLGDIGKLFP 62
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
D+D KYK SS +LLK V + G+++ + +TI ++ PKI+PY I ++L +L +
Sbjct: 63 DSDNKYKGISSLKLLKEVNALIKDKGYKIGNIDSTIIAQKPKISPYIEDIKKSLCNVLDI 122
Query: 369 EKSQISLKATTMEKMGFIGKQEGLLVQA 396
+ I++KATT E +GF G+ EG+ Q+
Sbjct: 123 DLGSINIKATTEEGLGFTGRGEGISSQS 150
>gb|AAF65155.1|AF250236_1 (AF250236) 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[Catharanthus roseus]
Length = 236
Score = 129 bits (323), Expect = 8e-29
Identities = 64/155 (41%), Positives = 94/155 (60%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
+G GFD H P+++GG+ + + G +AHSDGD LLH V+DAILGA+ DIG+ FP
Sbjct: 82 VGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFP 141
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
D DPK+K A S +K + G+EL + AT+ + PK++P+K AI +NL QLLG
Sbjct: 142 DTDPKWKGAPSSVFIKEAVRLMDEAGYELGNLDATLILQRPKVSPHKEAIRQNLCQLLGA 201
Query: 369 EKSQISLKATTMEKMGFIGKQEGLLVQAHVSMRYK 403
+ ++LKA T EK+ +G+ + V + K
Sbjct: 202 DPCVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK 236
>ref|NP_252317.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa]
sp|P57708|ISPF_PSEAE 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS)
(MECDP-synthase)
pir||A83194 conserved hypothetical protein PA3627 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG07015.1|AE004782_13 (AE004782) conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 157
Score = 127 bits (319), Expect = 2e-28
Identities = 64/148 (43%), Positives = 98/148 (65%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
IG G+D H F + + LGGV + + GL AHSDGD LLHA+ DA+LGA GDIG+ FP
Sbjct: 3 IGHGYDVHRFGEGDFITLGGVRIPHKHGLVAHSDGDVLLHALSDALLGAAALGDIGKHFP 62
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
D DP++K A S+ LL+ V+ G+++ + ATI ++ PK+ P+ + +++ LG+
Sbjct: 63 DTDPRFKGADSRALLRHVVAIVAEKGWKVGNVDATIVAQAPKMAPHIETMRGLIAEDLGV 122
Query: 369 EKSQISLKATTMEKMGFIGKQEGLLVQA 396
Q+++KATT E++GF G++EG+ V A
Sbjct: 123 AVDQVNVKATTTERLGFTGREEGIAVHA 150
>sp|Q47956|ISPF_HAEDU 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS)
(MECDP-synthase)
pir||S70845 hypothetical protein 1 - Haemophilus ducreyi
gb|AAC43539.1| (U32175) hypothetical protein 1 [Haemophilus ducreyi]
Length = 160
Score = 127 bits (319), Expect = 2e-28
Identities = 63/148 (42%), Positives = 95/148 (63%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
IG GFD HAF + +P+++GGV + G AHSDGD LHA+ DA+LGA GDIG+ FP
Sbjct: 4 IGHGFDVHAFGEKRPLIIGGVTIPYHTGFIAHSDGDVALHALTDALLGAAALGDIGKLFP 63
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
D D +YKN S++LL Q+ G+++ + TI ++ PK+ P+ + + ++ L
Sbjct: 64 DTDQQYKNIDSRKLLIEAYRQVQTKGYQISNIDITIIAQAPKMRPHIDNMRQLIANDLNC 123
Query: 369 EKSQISLKATTMEKMGFIGKQEGLLVQA 396
+ QI++KATT EK+GF G+ EG+ +A
Sbjct: 124 DIDQINIKATTTEKLGFTGRGEGIACEA 151
>ref|NP_487923.1| (NC_003272) 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[Nostoc sp. PCC 7120]
sp|Q8YQF0|ISPF_ANASP 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS)
(MECDP-synthase)
dbj|BAB75582.1| (AP003594) 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[Nostoc sp. PCC 7120]
Length = 165
Score = 126 bits (317), Expect = 4e-28
Identities = 61/150 (40%), Positives = 96/150 (63%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
IG G+D H + D+ ++LGGV + E GL HSD D L HA++DA+LGA+ GDIG +FP
Sbjct: 7 IGNGYDIHRLVSDRALILGGVHIPHELGLLGHSDADVLTHAIMDAMLGALSLGDIGHYFP 66
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
DP++ A S LL V + ++ G+ + + + + +E PK+ P+ + + L+ +L L
Sbjct: 67 PTDPQWAGADSLVLLSQVNELIRTQGWRIGNIDSVVVAERPKLKPHIKTMRDKLADILQL 126
Query: 369 EKSQISLKATTMEKMGFIGKQEGLLVQAHV 398
E +QI +KATT EK+G +G++EG+ A V
Sbjct: 127 EPNQIGVKATTNEKLGPVGREEGICAYAVV 156
>ref|NP_274520.1| (NC_003112) YgbB/YacN family protein [Neisseria meningitidis MC58]
sp|Q9JYM5|ISPF_NEIMB 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS)
(MECDP-synthase)
pir||G81073 YgbB/YacN family protein NMB1512 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF41868.1| (AE002501) YgbB/YacN family protein [Neisseria meningitidis MC58]
Length = 160
Score = 125 bits (315), Expect = 7e-28
Identities = 61/150 (40%), Positives = 95/150 (62%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
IG G+D H + + ++LGGV + E GL HSD DALLHAV DA+LGA GDIG FP
Sbjct: 6 IGQGYDVHQLTEGRKLILGGVEIPFEKGLLGHSDADALLHAVTDALLGAAGLGDIGSHFP 65
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
D ++K+A S+ LL+ Q+ G++ + T+ ++ PK+ P+ P + N++ LG+
Sbjct: 66 DTAAEFKDADSRVLLRAAYQSVQAQGWQAVNVDTTVIAQKPKLAPHIPQMRANIAADLGI 125
Query: 369 EKSQISLKATTMEKMGFIGKQEGLLVQAHV 398
+ S +++K T EK+G++G+ EG+ QA V
Sbjct: 126 DISCVNIKGKTNEKLGYLGRMEGIEAQAAV 155
>ref|NP_284427.1| (NC_003116) conserved hypothetical protein [Neisseria meningitidis
Z2491]
sp|Q9JTM4|ISPF_NEIMA 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS)
(MECDP-synthase)
pir||C81867 conserved hypothetical protein NMA1712 [imported] - Neisseria
meningitidis (group A strain Z2491)
emb|CAB84940.1| (AL162756) conserved hypothetical protein [Neisseria meningitidis
Z2491]
Length = 160
Score = 125 bits (313), Expect = 1e-27
Identities = 61/150 (40%), Positives = 95/150 (62%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
IG G+D H + + ++LGGV + E GL HSD DALLHAV DA+LGA GDIG FP
Sbjct: 6 IGQGYDVHQLTEGRKLILGGVEIPFEKGLLGHSDADALLHAVTDALLGAAGLGDIGSHFP 65
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
D ++K+A S+ LL+ Q+ G++ + T+ ++ PK+ P+ P + N++ LG+
Sbjct: 66 DTAAEFKDADSRVLLRAAYQSVQAQGWQAVNVDTTVIAQKPKLAPHIPQMRANIAADLGI 125
Query: 369 EKSQISLKATTMEKMGFIGKQEGLLVQAHV 398
+ S +++K T EK+G++G+ EG+ QA V
Sbjct: 126 DISCVNIKGKTNEKLGYLGRMEGIESQAAV 155
>ref|NP_406823.1| (NC_003143) 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[Yersinia pestis]
sp|Q8ZBP7|ISPF_YERPE 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS)
(MECDP-synthase)
emb|CAC92590.1| (AJ414156) 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[Yersinia pestis]
Length = 162
Score = 123 bits (309), Expect = 3e-27
Identities = 66/152 (43%), Positives = 95/152 (62%), Gaps = 2/152 (1%)
Query: 249 IGMGFDTHAFIKDK--PMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEW 306
IG GFD H F ++ P+++GGV + E GL AHSDGD LHA DA+LGA GDIG+
Sbjct: 3 IGHGFDVHKFGENGSGPLIIGGVRIPYEKGLLAHSDGDVALHAATDALLGAAALGDIGKL 62
Query: 307 FPDNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLL 366
FPD DP +K A S+ LL+ + G++L + TI ++ PK+ P+ P + NL++ L
Sbjct: 63 FPDTDPAFKGADSRGLLREAYRRILAKGYKLGNLDITIIAQAPKMAPHIPQMRVNLAEDL 122
Query: 367 GLEKSQISLKATTMEKMGFIGKQEGLLVQAHV 398
I++KATT E++GF G+ EG+ +A V
Sbjct: 123 QCHMDDINVKATTTEQLGFTGRGEGIACEAVV 154
>ref|NP_660743.1| (NC_004061) hypothetical 16.9 kD protein in surE-cysC [Buchnera
aphidicola str. Sg (Schizaphis graminum)]
gb|AAM67954.1| (AE014116) hypothetical 16.9 kD protein in surE-cysC [Buchnera
aphidicola str. Sg (Schizaphis graminum)]
Length = 167
Score = 121 bits (304), Expect = 1e-26
Identities = 63/152 (41%), Positives = 96/152 (62%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
IG GFD HAF KP+++GGV + GL AHS+GD L+H++IDA+LGA GDIG +FP
Sbjct: 3 IGYGFDIHAFGSIKPLIIGGVQIPYNKGLIAHSNGDLLIHSLIDALLGATAMGDIGTFFP 62
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
D KYKN +S+ LLK + + + + TI +E PKI Y + N++ L +
Sbjct: 63 SEDKKYKNINSRILLKYIWKRIYLKNYRISNIDITIITETPKILSYIFLMRSNIASDLNI 122
Query: 369 EKSQISLKATTMEKMGFIGKQEGLLVQAHVSM 400
+ +IS+K+T+ + +G IG++EG+ Q+ V +
Sbjct: 123 KIEKISVKSTSSKMIGCIGRKEGIACQSLVML 154
>ref|NP_440786.1| (NC_000911) hypothetical protein [Synechocystis sp. PCC 6803]
sp|P73426|ISPF_SYNY3 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS)
(MECDP-synthase)
pir||S77363 hypothetical protein slr1542 - Synechocystis sp. (strain PCC 6803)
dbj|BAA17466.1| (D90906) ORF_ID:slr1542~hypothetical protein [Synechocystis sp. PCC
6803]
Length = 161
Score = 120 bits (302), Expect = 2e-26
Identities = 58/144 (40%), Positives = 92/144 (63%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
IG G+D H + D+P++LGGV + GL HSD D L HA++DA+LGA+ GDIG +FP
Sbjct: 6 IGNGYDIHRLVGDRPLILGGVTIAHHLGLDGHSDADVLTHALMDALLGALSLGDIGHYFP 65
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
+D +++ A S +LL V G+ + + I +E PK+ P+ A+ ENL+++L +
Sbjct: 66 PSDARWQGADSLKLLAQVHQLILERGWRINNLDNVIVAEQPKLKPHIQAMKENLAKVLTI 125
Query: 369 EKSQISLKATTMEKMGFIGKQEGL 392
+ I +KATT E++G G++EG+
Sbjct: 126 DPDLIGIKATTNERLGPTGREEGI 149
>ref|NP_642053.1| (NC_003919) 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[Xanthomonas axonopodis pv. citri str. 306]
gb|AAM36589.1| (AE011804) 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[Xanthomonas axonopodis pv. citri str. 306]
Length = 166
Score = 120 bits (302), Expect = 2e-26
Identities = 62/150 (41%), Positives = 93/150 (61%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
IG G+D HAF ++LGGV + G+ AHSDGD +LHA+ DA+LGA+ GDIG FP
Sbjct: 7 IGQGYDVHAFGPGDHVMLGGVRVAHSHGVLAHSDGDVVLHALCDAMLGALALGDIGRHFP 66
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
+D ++K+A S + L+ + G+ + T+ E PK+ P+ A+ E ++ LL +
Sbjct: 67 PSDARWKDADSAQFLQHCDGLLRERGWRVGNADITVICERPKVGPHAVAMRERIADLLAI 126
Query: 369 EKSQISLKATTMEKMGFIGKQEGLLVQAHV 398
E +S+KATT E++GF G+ EG+ QA V
Sbjct: 127 ELDAVSVKATTSEQLGFTGRGEGIAAQAAV 156
>ref|NP_228456.1| (NC_000853) conserved hypothetical protein [Thermotoga maritima]
sp|Q9WZB5|ISPF_THEMA 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS)
(MECDP-synthase)
pir||F72351 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
gb|AAD35731.1|AE001738_11 (AE001738) conserved hypothetical protein [Thermotoga maritima]
Length = 165
Score = 119 bits (298), Expect = 6e-26
Identities = 61/149 (40%), Positives = 93/149 (61%), Gaps = 3/149 (2%)
Query: 248 FIGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWF 307
FIG G+D H ++ + +VL GV +D G HSDGD L HA+IDA+LGA GDIG WF
Sbjct: 7 FIGFGYDRHPLVEGRRLVLAGVEIDAPLGSLGHSDGDVLSHAIIDALLGAGCLGDIGTWF 66
Query: 308 PDNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLG 367
P+ +YK+A+S +LLK + + GF + + AT+ + I K++PY+ I+ENL
Sbjct: 67 PET-KEYKDANSLDLLKETVKILEERGFSVVNVDATVVASIVKLSPYREKIVENLKS--A 123
Query: 368 LEKSQISLKATTMEKMGFIGKQEGLLVQA 396
LE S++++K + +GF G++ G+ A
Sbjct: 124 LETSRVNVKFKSGNTLGFEGEERGISAYA 152
>ref|NP_637073.1| (NC_003902) 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[Xanthomonas campestris pv. campestris str. ATCC 33913]
gb|AAM40997.1| (AE012271) 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[Xanthomonas campestris pv. campestris str. ATCC 33913]
Length = 163
Score = 119 bits (298), Expect = 6e-26
Identities = 61/150 (40%), Positives = 91/150 (60%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
IG G+D HAF ++LGGV + G+ AHSDGD +LHA+ DA+LG + GDIG FP
Sbjct: 7 IGQGYDVHAFGPGDHLMLGGVRMAHSHGVLAHSDGDVVLHALCDAMLGGLALGDIGVHFP 66
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
+D ++K A S + ++ + G+ + T+ E PK+ P+ A+ E ++ LL +
Sbjct: 67 PSDARWKGADSAQFVQHCDQLLRDRGWRVGNADITVICERPKVGPHALAMRERIAGLLAI 126
Query: 369 EKSQISLKATTMEKMGFIGKQEGLLVQAHV 398
E +S+KATT EK+GF G+ EG+ QA V
Sbjct: 127 ELDAVSVKATTSEKLGFTGRSEGIAAQAAV 156
>ref|NP_602588.1| (NC_003454) 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
gb|AAL93887.1| (AE010481) 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
Length = 160
Score = 115 bits (288), Expect = 9e-25
Identities = 56/144 (38%), Positives = 90/144 (61%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
IG G+D H ++ + ++LGGV + G+ HSDGD LLHA+ DAI+GA+ GDIG FP
Sbjct: 4 IGNGYDVHKLVEGRKLMLGGVEVPHTKGVLGHSDGDVLLHAITDAIIGALGLGDIGLHFP 63
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
DND K+ S LLK + + + +++ + + I + PK+ PY +I +N++++L +
Sbjct: 64 DNDENLKDIDSAILLKKINNIMKEKNYKIVNLDSIIVMQKPKLRPYIDSIRDNIAKILEI 123
Query: 369 EKSQISLKATTMEKMGFIGKQEGL 392
I++KA T EK+GF G + G+
Sbjct: 124 NSELINVKAKTEEKLGFTGDETGV 147
>ref|NP_298583.1| (NC_002488) conserved hypothetical protein [Xylella fastidiosa
9a5c]
sp|Q9PDT5|ISPF_XYLFA 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS)
(MECDP-synthase)
pir||A82701 conserved hypothetical protein XF1294 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF84103.1|AE003962_13 (AE003962) conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 176
Score = 114 bits (286), Expect = 2e-24
Identities = 63/150 (42%), Positives = 92/150 (61%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
IG G+D HAF ++LGGV + G+ AHSDGD +LHA+ DA+LGA+ GDIG+ FP
Sbjct: 17 IGQGYDVHAFGPGDHVMLGGVRVPHRCGVLAHSDGDVILHALCDAMLGALGLGDIGQHFP 76
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
+D ++K A S ++ + + + + AT E PKI PY A+ E +++LL +
Sbjct: 77 PSDVRWKGADSGVFVRHCHLLLRERDWCVGNVDATAICESPKIAPYVNAMREGIARLLEV 136
Query: 369 EKSQISLKATTMEKMGFIGKQEGLLVQAHV 398
+ +S+KATT E +GFIG+ EGL Q V
Sbjct: 137 QPECVSVKATTSEGLGFIGRGEGLAAQVVV 166
>gb|AAG35071.1|AF321531_1 (AF321531) 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[Arabidopsis thaliana]
Length = 223
Score = 110 bits (276), Expect = 2e-23
Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 18/222 (8%)
Query: 185 QLSHTKALQSALNQGDFKDESSAILQAFPDR-VSYIEGSKDLHKLTTSGDLKHFTLFFNP 243
Q++ L A G ++ + S L P VS + D+++ TS + TL F
Sbjct: 19 QITKKPFLLPATKIGVWRPKKSLSLSCRPSASVSAASSAVDVNESVTS-EKPTKTLPFR- 76
Query: 244 AKDTFIGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDI 303
IG GFD H P+++GG+ + + G +AHSD +DAILGA+ DI
Sbjct: 77 -----IGHGFDLHRLEPGYPLIIGGIDIPHDRGCEAHSD--------VDAILGALGLPDI 123
Query: 304 GEWFPDNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLS 363
G+ FPD+DPK+K A+S +K + G+E+ + AT+ + PKI+P+K I NLS
Sbjct: 124 GQIFPDSDPKWKEAASSVFIKEAVRLMDEAGYEIGNLDATLILQRPKISPHKETIRSNLS 183
Query: 364 QLLGLEKSQISLKATTMEKMGFIGKQEGLLVQAHVSMRYKQK 405
+LLG + S ++LKA T EK+ +G E V AH + +K
Sbjct: 184 KLLGADPSVVNLKAKTHEKVDSLG--ENRSVAAHTVILLMKK 223
>ref|NP_218953.1| (NC_000919) conserved hypothetical protein [Treponema pallidum]
sp|O83525|ISDF_TREPA IspD/ispF bifunctional enzyme [Includes: 2-C-methyl-D-erythritol
4-phosphate cytidylyltransferase
(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)
(MEP cytidylyltransferase) (MCT);
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
(MECPS) (MECD>
pir||G71314 conserved hypothetical protein TP0512 - syphilis spirochete
gb|AAC65500.1| (AE001227) conserved hypothetical protein [Treponema pallidum]
Length = 399
Score = 108 bits (270), Expect = 1e-22
Identities = 90/331 (27%), Positives = 152/331 (45%), Gaps = 28/331 (8%)
Query: 96 RHYPEIKLVKGGASRQESVRNALKIIDSA---YTLTSDVARGLANIEALKNLFLTLQQTS 152
R P I V G +R SVR L + + L D AR ++ + ++ L+ T
Sbjct: 70 RTRPVILYVPGAHTRSASVRAGLDAMATHAPDVVLVHDGARPFVSVALIHSV---LEATC 126
Query: 153 HYCIA-PYLPCYDT--AIYYNEALD----REAIKLIQTPQ----LSHTKALQSALNQGDF 201
Y A P + DT + + +++ R ++L QTPQ S A A G+
Sbjct: 127 RYGAAVPVIEATDTPKGVAADGSIETHLIRSRVRLAQTPQGFCYASLCAAHHRAATDGEQ 186
Query: 202 KDESSAILQAFPDRVSYIEGSKDLHKLTTSGDLKHFT--------LFFNPAKDTF---IG 250
+ S + + V G + K+T DL+ + P + +G
Sbjct: 187 YTDDSELYARYGGTVHVCAGERSNVKITYPEDLEQRASEPALTRGISVLPCTEEGALRVG 246
Query: 251 MGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFPDN 310
+G D HA +P++L G+ + + G + HSD D L HA IDA+LGA GDIG +FP
Sbjct: 247 LGTDMHALCAGRPLILAGIHIPSKKGAQGHSDADVLAHASIDALLGAAGLGDIGTFFPSC 306
Query: 311 DPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGLEK 370
D ++K+A S LL+ ++ + L + A + E P + P++ A+ +L+Q L
Sbjct: 307 DGRWKDAHSCALLRHTWQLVRAACWRLVNLDAVVCLEQPALHPFREAMRASLAQALDTHV 366
Query: 371 SQISLKATTMEKMGFIGKQEGLLVQAHVSMR 401
+++ +KA T E++G +G + Q V ++
Sbjct: 367 TRVFVKAKTAERLGPVGSGAAVTAQVVVLLK 397
>dbj|BAB86885.1| (AB082126) 2-C-methyl-D-erythritol 2,4-cyclodiphoshate synthase
[Thermus thermophilus]
Length = 152
Score = 96.7 bits (239), Expect = 4e-19
Identities = 50/133 (37%), Positives = 80/133 (59%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
IG G D+H + +P+ L G+++ G AHSDGDA LHA+ DA+L A GDIG FP
Sbjct: 3 IGYGEDSHRLEEGRPLYLCGLLIPSPVGALAHSDGDAALHALTDALLSAYGLGDIGLLFP 62
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
D DP+++ S+ L+ L ++ G +L + + + PK+ P++ A++++LS+LL L
Sbjct: 63 DTDPRWRGERSEVFLREALRLVEARGAKLLQASLVLTLDRPKLGPHRKALVDSLSRLLRL 122
Query: 369 EKSQISLKATTME 381
+ +I L T E
Sbjct: 123 PQDRIGLTFKTSE 135
>ref|NP_293954.1| (NC_001263) conserved hypothetical protein [Deinococcus
radiodurans]
sp|Q9RXS6|ISPF_DEIRA 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS)
(MECDP-synthase)
pir||F75542 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF09818.1|AE001885_2 (AE001885) conserved hypothetical protein [Deinococcus radiodurans]
Length = 161
Score = 95.5 bits (236), Expect = 1e-18
Identities = 49/134 (36%), Positives = 75/134 (55%), Gaps = 1/134 (0%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLD-CEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWF 307
IG G D H P+VLGGV + E G AHSDGDA+LHAV DA+L + GDIG++F
Sbjct: 8 IGYGEDAHRLAPGLPLVLGGVAIPHAELGAVAHSDGDAVLHAVADALLSGLALGDIGQYF 67
Query: 308 PDNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLG 367
PD ++K S+ +L L+ + G+ + + + PK+ P + I ++++LLG
Sbjct: 68 PDTAAEWKGMDSRRILAKALELVEERGYRPVNVALVVTLDRPKLGPLRADIAASVAELLG 127
Query: 368 LEKSQISLKATTME 381
L ++ + T E
Sbjct: 128 LPAGEVGVSFKTSE 141
>ref|NP_301349.1| (NC_002677) putative 2-C-methyl-D-erythritol 2,4-cyclodiphosphate
synthase [Mycobacterium leprae]
sp|Q9CCW5|ISPF_MYCLE 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS)
(MECDP-synthase)
emb|CAC29830.1| (AL583918) putative 2-C-methyl-D-erythritol 2,4-cyclodiphosphate
synthase [Mycobacterium leprae]
Length = 158
Score = 94.4 bits (233), Expect = 2e-18
Identities = 51/144 (35%), Positives = 77/144 (53%), Gaps = 3/144 (2%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
+G+GFD H F +P L G++ G HSDGD +HA+ DA+L A GDIG F
Sbjct: 7 VGLGFDVHVFEPGRPCWLVGLLFPDNDGCAGHSDGDVAVHALCDAVLSAAGQGDIGGLFA 66
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
DP+++ S ++L+ V++ G+E+ + PKI P + LS LL
Sbjct: 67 VGDPRWERVSGADMLRHVVELLLRHGYEVVNASVQVIGNRPKIGPRRTEAQRLLSALL-- 124
Query: 369 EKSQISLKATTMEKMGFIGKQEGL 392
++ +S+ ATT E +G G+ EGL
Sbjct: 125 -RAPVSVAATTTEGLGLTGRGEGL 147
>ref|NP_473012.1| (NC_000910) YgbB protein, 1st euk. member (OO, TP) [Plasmodium
falciparum]
sp|O96178|ISPF_PLAFD 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase precursor
(MECPS) (MECDP-synthase)
pir||B71615 YgbB protein, 1st euk. member (OO, TP) PFB0420w - malaria parasite
(Plasmodium falciparum)
gb|AAC71873.1| (AE001394) YgbB protein, 1st euk. member (OO, TP) [Plasmodium
falciparum 3D7]
gb|AAG09818.1|AF279661_1 (AF279661) 2C-Methyl-D-erythritol 2,4-cyclodiphosphate synthase
[Plasmodium falciparum]
Length = 240
Score = 94.4 bits (233), Expect = 2e-18
Identities = 48/137 (35%), Positives = 85/137 (62%), Gaps = 1/137 (0%)
Query: 262 KPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFPDNDPKYKNASSKE 321
K + LGGV ++ L +HSDGD + H+++D+ILGA+ DIG FPD D K KN +S
Sbjct: 98 KTLTLGGVKINNVLVL-SHSDGDIIYHSIVDSILGALGSLDIGTLFPDKDEKNKNKNSAI 156
Query: 322 LLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGLEKSQISLKATTME 381
L+ +++ + + +++PKI+ + I++N+S +L +++SQIS+K T E
Sbjct: 157 FLRYARLLIYKKNYDIGNVDINVIAQVPKISNIRKNIIKNISTVLNIDESQISVKGKTHE 216
Query: 382 KMGFIGKQEGLLVQAHV 398
K+G IG+++ + A++
Sbjct: 217 KLGVIGEKKAIECFANI 233
>gb|AAF24570.1|AC007764_12 (AC007764) F22C12.26 [Arabidopsis thaliana]
Length = 161
Score = 88.6 bits (218), Expect = 1e-16
Identities = 56/146 (38%), Positives = 81/146 (55%), Gaps = 8/146 (5%)
Query: 185 QLSHTKALQSALNQGDFKDESSAILQAFPDR-VSYIEGSKDLHKLTTSGDLKHFTLFFNP 243
Q++ L A G ++ + S L P VS + D+++ TS + TL F
Sbjct: 19 QITKKPFLLPATKIGVWRPKKSLSLSCRPSASVSAASSAVDVNESVTS-EKPTKTLPFR- 76
Query: 244 AKDTFIGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDI 303
IG GFD H P+++GG+V+ + G +AHSDGD LLH V+DAILGA+ DI
Sbjct: 77 -----IGHGFDLHRLEPGYPLIIGGIVIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDI 131
Query: 304 GEWFPDNDPKYKNASSKELLKIVLDF 329
G+ FPD+DPK+K A+S +K + F
Sbjct: 132 GQIFPDSDPKWKGAASSVFIKEAVRF 157
>ref|NP_601858.1| (NC_003450) COG0245:2C-methyl-D-erythritol 2,4-cyclodiphosphate
synthase [Corynebacterium glutamicum]
dbj|BAC00053.1| (AP005282) 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[Corynebacterium glutamicum ATCC 13032]
Length = 160
Score = 85.5 bits (210), Expect = 1e-15
Identities = 45/143 (31%), Positives = 76/143 (52%), Gaps = 3/143 (2%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
+G+ D H KP + ++ + G + HSDGD + HA++DA+L A GD+G +
Sbjct: 9 VGIATDAHQIEAGKPCWIACLLFEGVDGCEGHSDGDVVAHAIVDALLSASGLGDLGSFVG 68
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
P+Y S +LLK V + + G+ + + A + + PK P + + +S+++G
Sbjct: 69 VGRPEYDGVSGTQLLKEVRELLSAHGYVIGNVAAQLVGQTPKFGPRREEAQQVISEIIG- 127
Query: 369 EKSQISLKATTMEKMGFIGKQEG 391
+ SL ATT + MGF G+ EG
Sbjct: 128 --APCSLSATTTDHMGFTGRSEG 148
>ref|NP_218098.1| (NC_000962) hypothetical protein Rv3581c [Mycobacterium
tuberculosis H37Rv]
ref|NP_338231.1| (NC_002755) conserved hypothetical protein [Mycobacterium
tuberculosis CDC1551]
sp|P96863|ISPF_MYCTU 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS)
(MECDP-synthase)
pir||C70607 hypothetical protein Rv3581c - Mycobacterium tuberculosis (strain
H37RV)
emb|CAB07155.1| (Z92774) hypothetical protein Rv3581c [Mycobacterium tuberculosis
H37Rv]
gb|AAK48045.1| (AE007169) conserved hypothetical protein [Mycobacterium
tuberculosis CDC1551]
Length = 159
Score = 79.3 bits (194), Expect = 7e-14
Identities = 47/144 (32%), Positives = 74/144 (50%), Gaps = 3/144 (2%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
+G+G D H +P L G++ G HSDGD +HA+ DA+L A GDIGE F
Sbjct: 7 VGLGTDVHPIEPGRPCWLVGLLFPSADGCAGHSDGDVAVHALCDAVLSAAGLGDIGEVFG 66
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
+DP+++ S ++L+ V+ G+ + + PKI + LS+LL
Sbjct: 67 VDDPRWQGVSGADMLRHVVVLITQHGYRVGNAVVQVIGNRPKIGWRRLEAQAVLSRLL-- 124
Query: 369 EKSQISLKATTMEKMGFIGKQEGL 392
+ +S+ ATT + +G G+ EGL
Sbjct: 125 -NAPVSVSATTTDGLGLTGRGEGL 147
>ref|NP_623859.1| (NC_003869) 4-diphosphocytidyl-2-methyl-D-erithritol synthase
[Thermoanaerobacter tengcongensis]
gb|AAM25463.1| (AE013174) 4-diphosphocytidyl-2-methyl-D-erithritol synthase
[Thermoanaerobacter tengcongensis]
Length = 227
Score = 72.4 bits (176), Expect = 9e-12
Identities = 63/221 (28%), Positives = 101/221 (45%), Gaps = 17/221 (7%)
Query: 37 SVVLLAAGESRRFSQTIKKQWLRSNHTPLWLSVYESFKEALDFKEIILVVSELDYIYIKR 96
S V++AAG S R ++++ K +L P+ ++F E KEII+V S + Y +
Sbjct: 4 SAVIVAAGRSTRMNKSLNKVYLSIAGKPVLYYSIKAFDEIEWIKEIIVVTSPEETEYCQE 63
Query: 97 HYPE-------IKLVKGGASRQESVRNALKIIDSAYTLTS--DVARGLAN----IEALKN 143
+ E K+VKGG RQ SV N + ++D + + D AR L +EA+K
Sbjct: 64 NVLEKFYWNKPFKIVKGGEERQYSVYNGISVVDKDCEIVAIHDGARPLVTKEIIMEAIKA 123
Query: 144 LFLTLQQTSHYCIAPYLPCYDTAIYYNEALDREAIKLIQTPQLSH----TKALQSALNQG 199
+L + + D + + DR + IQTPQ+ KA + AL +G
Sbjct: 124 AYLYKAAAVGVPVKDTIKVADEDNFILDTPDRRYLWAIQTPQVFEKELIVKAHRKALEEG 183
Query: 200 DFKDESSAILQAFPDRVSYIEGSKDLHKLTTSGDLKHFTLF 240
+ S +++ +V +EG K+TT DL LF
Sbjct: 184 FLGTDDSVLVERMGFKVKLVEGDYKNIKITTPEDLVVAELF 224
>ref|NP_628408.1| (NC_003888) 2C-methyl-D-erythriol 2,4-cyclodiphosphate synthase
[Streptomyces coelicolor A3(2)]
sp|Q9L0Q7|ISPF_STRCO 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS)
(MECDP-synthase)
emb|CAB77328.1| (AL160331) 2C-methyl-D-erythriol 2,4-cyclodiphosphate synthase
[Streptomyces coelicolor A3(2)]
Length = 170
Score = 69.7 bits (169), Expect = 6e-11
Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 4/149 (2%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCE-FGLKAHSDGDALLHAVIDAILGAIKGGDIGEWF 307
+G+G D HAF + + G+ + E GL HSD D + HA +A+ A GD+G+ F
Sbjct: 17 VGIGTDIHAFEDGRELWCAGLKWEGEGTGLAGHSDADVVAHAACNALFSAAGAGDLGQHF 76
Query: 308 PDNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLG 367
P++ AS LL ++ GF + + + PKI + LS +G
Sbjct: 77 GTGRPEWSGASGVTLLAEAARIVRARGFRIGNVAVQVVGARPKIGKRRDEAEAVLSAAVG 136
Query: 368 LEKSQISLKATTMEKMGFIGKQEGLLVQA 396
+ +S+ T + +GF G+ EGL+ A
Sbjct: 137 ---APVSVSGATTDGLGFPGRGEGLMAVA 162
>sp|Q06755|ISPD_BACSU 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)
(MEP cytidylyltransferase) (MCT)
gb|AAA21794.1| (L14580) unknown [Bacillus subtilis]
Length = 232
Score = 67.4 bits (163), Expect = 3e-10
Identities = 62/214 (28%), Positives = 94/214 (42%), Gaps = 19/214 (8%)
Query: 38 VVLLAAGESRRFSQTIKKQWLRSNHTPLWLSVYESFKEALDFKEIILVVSELDYIYIKR- 96
VV+ AAG+ +R K ++ P+ + F +IILV++E D + ++
Sbjct: 5 VVIPAAGQGKRMKAGRNKLFIELKGDPVIIHTLRVFDSHRQCDKIILVINEQDREHFQQL 64
Query: 97 --HYP---EIKLVKGGASRQESVRNALKII-DSAYTLTSDVARGLANIEALKNLFLTLQQ 150
YP I+LV GG RQ SV LK + L D AR E + L +Q
Sbjct: 65 LSDYPFQTSIELVAGGDERQHSVYKGLKAVKQEKIVLVHDGARPFIKHEQIDELIAEAEQ 124
Query: 151 TSHYCIAPYLPCYDTA-----IYYNEALDREAIKLIQTPQLSHTKALQSALNQGDFK--- 202
T +A +P DT + +E ++R ++ +QTPQ L A + + K
Sbjct: 125 TGAAILA--VPVKDTIKRVQDLQVSETIERSSLWAVQTPQAFRLSLLMKAHAEAERKGFL 182
Query: 203 --DESSAILQAFPDRVSYIEGSKDLHKLTTSGDL 234
D++S + Q V +EGS KLTT DL
Sbjct: 183 GTDDASLVEQMEGGSVRVVEGSYTNIKLTTPDDL 216
>ref|NP_387971.1| (NC_000964) similar to hypothetical proteins [Bacillus subtilis]
pir||S66119 conserved hypothetical protein yacM - Bacillus subtilis
dbj|BAA05324.1| (D26185) unknown [Bacillus subtilis]
emb|CAB11866.1| (Z99104) similar to hypothetical proteins [Bacillus subtilis]
Length = 232
Score = 65.9 bits (159), Expect = 8e-10
Identities = 61/214 (28%), Positives = 94/214 (43%), Gaps = 19/214 (8%)
Query: 38 VVLLAAGESRRFSQTIKKQWLRSNHTPLWLSVYESFKEALDFKEIILVVSELDYIYIKR- 96
VV+ AAG+ +R K ++ P+ + F +IILV++E + + ++
Sbjct: 5 VVIPAAGQGKRMKAGRNKLFIELKGDPVIIHTLRVFDSHRQCDKIILVINEQEREHFQQL 64
Query: 97 --HYP---EIKLVKGGASRQESVRNALKII-DSAYTLTSDVARGLANIEALKNLFLTLQQ 150
YP I+LV GG RQ SV LK + L D AR E + L +Q
Sbjct: 65 LSDYPFQTSIELVAGGDERQHSVYKGLKAVKQEKIVLVHDGARPFIKHEQIDELIAEAEQ 124
Query: 151 TSHYCIAPYLPCYDTA-----IYYNEALDREAIKLIQTPQLSHTKALQSALNQGDFK--- 202
T +A +P DT + +E ++R ++ +QTPQ L A + + K
Sbjct: 125 TGAAILA--VPVKDTIKRVQDLQVSETIERSSLWAVQTPQAFRLSLLMKAHAEAERKGFL 182
Query: 203 --DESSAILQAFPDRVSYIEGSKDLHKLTTSGDL 234
D++S + Q V +EGS KLTT DL
Sbjct: 183 GTDDASLVEQMEGGSVRVVEGSYTNIKLTTPDDL 216
>ref|NP_654034.1| (NC_003995) UPF0007, Uncharacterized protein family UPF0007
[Bacillus anthracis A2012] [Bacillus anthracis str.
A2012]
Length = 226
Score = 63.9 bits (154), Expect = 3e-09
Identities = 54/214 (25%), Positives = 101/214 (46%), Gaps = 18/214 (8%)
Query: 37 SVVLLAAGESRRFSQTIKKQWLRSNHTPLWLSVYESFKEALDFKEIILVVSELDYIYIK- 95
++++ AAG+ +R K +L N P+ + +F++ K II+ ++E + Y +
Sbjct: 3 TLIIPAAGQGKRMGAGKNKLFLLINEVPIIVHTLRAFEKDKACKNIIMAINEEERPYFEE 62
Query: 96 --RHYP---EIKLVKGGASRQESVRNALK-IIDSAYTLTSDVARGLANIEALKNLFLTLQ 149
+ YP ++ ++GGA RQ+SV NA++ D Y L D AR + ++++ +
Sbjct: 63 LMQKYPVEKPVQFIQGGAERQDSVYNAIQHTTDVEYVLVHDGARPFVTNKVIQDVLTAAE 122
Query: 150 QTSHYCIAPYLPCYDTAIYYN-----EALDREAIKLIQTPQLSHTKAL----QSALNQGD 200
+ A +P DT E ++R +K +QTPQ L +SA
Sbjct: 123 KYGASICA--VPVKDTVKKVEQGVVVETVERSQLKAVQTPQGFSVSLLLEAHRSAKQSCF 180
Query: 201 FKDESSAILQAFPDRVSYIEGSKDLHKLTTSGDL 234
+ +++++ +V +EGS K+TT DL
Sbjct: 181 LGTDDASLVERIGKQVGVVEGSYYNIKVTTPEDL 214
>ref|NP_219946.1| (NC_000117) YgbB family [Chlamydia trachomatis]
sp|O84441|ISPF_CHLTR 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS)
(MECDP-synthase)
pir||C71514 hypothetical protein CT434 - Chlamydia trachomatis (serotype D,
strain UW3/Cx)
gb|AAC68033.1| (AE001317) YgbB family [Chlamydia trachomatis]
Length = 178
Score = 61.2 bits (147), Expect = 2e-08
Identities = 39/147 (26%), Positives = 74/147 (49%), Gaps = 4/147 (2%)
Query: 249 IGMGFDTHAFIKD---KPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGE 305
+G+G D+H F+ D KP +LGG++ + G +A+SDGD + HA+ +A G +G
Sbjct: 19 VGIGQDSHRFLPDEDPKPCILGGIIFENTPGFEANSDGDVVFHAICNAFSSVTHKGILG- 77
Query: 306 WFPDNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQL 365
D K K + + S + + TI + PK+ P P++ + ++++
Sbjct: 78 GLADELLKTKGITDSVVYLQEAVASLKPTQRVSHLAITIEGKRPKLLPQLPSMRKRIAEV 137
Query: 366 LGLEKSQISLKATTMEKMGFIGKQEGL 392
L + I++ AT+ E + +G+ G+
Sbjct: 138 LHIPLDSINITATSGEGLTAMGQGYGV 164
>ref|NP_563345.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
sp|Q8XHQ3|ISPD_CLOPE 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)
(MEP cytidylyltransferase) (MCT)
dbj|BAB82135.1| (AP003194) conserved hypothetical protein [Clostridium perfringens]
Length = 225
Score = 60.8 bits (146), Expect = 3e-08
Identities = 57/219 (26%), Positives = 100/219 (45%), Gaps = 22/219 (10%)
Query: 39 VLLAAGESRRFSQTIKKQWLRSNHTPLWLSVYESFKEALDFKEIILVVSELDYIYIKRH- 97
V+LA G+ +R + KQ++ N P+ ++F+E EIILV+ + + Y KR
Sbjct: 7 VILAGGKGKRMGAEVSKQFIEINGKPIIYYTLKAFEECKGIDEIILVLPKDEIDYFKREI 66
Query: 98 -----YPEIKLVKGGASRQESVRNALKII-DSAYTLTSDVARGLANIEALKNLFLTLQQT 151
+ K+++GG RQ+SV NAL I D L D AR + + +++ ++
Sbjct: 67 EPRFDFKISKIIEGGKERQDSVYNALNSIGDCDIVLIHDGARAFVSNKIIEDGIKYSREF 126
Query: 152 SHYCIAPYLPCYDTAIYYN------EALDREAIKLIQTPQLSHTKALQSALNQGDFK--- 202
AP + DT N + +R ++ +QTPQ ++ N+ +
Sbjct: 127 G--AAAPGVMPKDTIKVKNLEGFSVDTPNRASLVAVQTPQCFKYNLIKKGHNKVKNEKIQ 184
Query: 203 -DESSAILQAFPDRVSYIEGSKDLHKLTTSGDL---KHF 237
+ + I++ ++V EG K+TT DL +HF
Sbjct: 185 VTDDTMIVELLGEKVYLFEGDYKNIKVTTPEDLILAEHF 223
>ref|NP_469612.1| (NC_003212) similar to nucleotidylyl transferase, pyrophosphorylase
[Listeria innocua]
sp|Q92F40|ISPD_LISIN 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)
(MEP cytidylyltransferase) (MCT)
emb|CAC95500.1| (AL596164) similar to nucleotidylyl transferase, pyrophosphorylase
[Listeria innocua]
Length = 232
Score = 60.5 bits (145), Expect = 4e-08
Identities = 53/212 (25%), Positives = 97/212 (45%), Gaps = 15/212 (7%)
Query: 38 VVLLAAGESRRFSQTIKKQWLRSNHTPLWLSVYESFKEALDFKEIILVVSELDYIYIKRH 97
++ LAAG+ +R + K WL P+++ F ++I+V E + ++++
Sbjct: 5 LIFLAAGQGKRMNAEKNKMWLDLVGEPIFIHALRPFLADNRCSKVIVVCQETERKHVRKL 64
Query: 98 YPE-------IKLVKGGASRQESVRNALKIID-SAYTLTSDVARGLANIEALKNLFLTLQ 149
+ +++VKGG+ RQ SV L+ + L D AR ++ + L L ++
Sbjct: 65 MQQLDVAEDRVEVVKGGSERQYSVAAGLECCGLESVVLVHDGARPFVTLDIIDRLLLGVK 124
Query: 150 QT-SHYCIAPYLPCYDTAIY--YNEALDREAIKLIQTPQLSHTKALQSA--LNQGD--FK 202
Q + C I+ E +DR+ + IQTPQ LQ A L + D
Sbjct: 125 QNKAAICAVQVKDTVKRVIHDVVKETVDRDNLWQIQTPQAFELHILQKAHRLAKKDQFLG 184
Query: 203 DESSAILQAFPDRVSYIEGSKDLHKLTTSGDL 234
+ +++++ P V+ ++GS KLTT D+
Sbjct: 185 TDEASLVERIPYPVAIVQGSYYNIKLTTPEDM 216
>ref|NP_463766.1| (NC_003210) similar to nucleotidylyl transferase, pyrophosphorylase
[Listeria monocytogenes EGD-e]
sp|Q8YAB5|ISPD_LISMO 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)
(MEP cytidylyltransferase) (MCT)
emb|CAD00762.1| (AL591974) similar to nucleotidylyl transferase, pyrophosphorylase
[Listeria monocytogenes]
Length = 232
Score = 60.1 bits (144), Expect = 5e-08
Identities = 55/214 (25%), Positives = 96/214 (44%), Gaps = 19/214 (8%)
Query: 38 VVLLAAGESRRFSQTIKKQWLRSNHTPLWLSVYESFKEALDFKEIILVVSELDYIYIKRH 97
+V LAAG+ +R + K WL P+++ F ++I+V E + ++K
Sbjct: 5 LVFLAAGQGKRMNAQKNKMWLELVGEPIFIHALRPFLADNRCSKVIVVCQEEERKHVKEL 64
Query: 98 YPE-------IKLVKGGASRQESVRNALKIIDSA-YTLTSDVARGLANIEALKNLFLTLQ 149
+ I++VKGG+ RQ SV L+ + L D AR ++ + L + ++
Sbjct: 65 MSQLNVAEHRIEIVKGGSERQYSVAAGLERCGTGRVVLVHDGARPFITLDIIDRLLIGVE 124
Query: 150 QTSHYCIAPYLPCYDTAI-----YYNEALDREAIKLIQTPQLSH----TKALQSALNQGD 200
Q+ A + DT E +DRE + +QTPQ KA Q A +
Sbjct: 125 QSKAAICA--VKVKDTVKRVMNGVVQETVDRENLWQVQTPQAFELPILRKAHQLARKEQF 182
Query: 201 FKDESSAILQAFPDRVSYIEGSKDLHKLTTSGDL 234
+ +++++ P V+ ++GS KLTT D+
Sbjct: 183 LGTDEASLVERIPCPVAIVQGSYYNIKLTTPEDM 216
>ref|NP_213907.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
sp|O67343|ISPD_AQUAE 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)
(MEP cytidylyltransferase) (MCT)
pir||D70414 conserved hypothetical protein aq_1323 - Aquifex aeolicus
gb|AAC07307.1| (AE000734) hypothetical protein [Aquifex aeolicus]
Length = 213
Score = 59.7 bits (143), Expect = 6e-08
Identities = 65/212 (30%), Positives = 99/212 (46%), Gaps = 25/212 (11%)
Query: 37 SVVLLAAGESRRFSQTIKKQWLRSNHTPLWLSVYESFKEALD-FKEIILVVSELDYIYIK 95
+ ++LAAG R +KQ+ PL++ S ++ LD F+E+ILV+ E D++
Sbjct: 3 TAIILAAGRGSRIG--FRKQFATLCGKPLFM---HSLEKVLDIFEEVILVLPE-DFLDKV 56
Query: 96 RHYPEIKLVKGGASRQESVRNALKIIDSAYTLTSDVARGLANIEALKNLFLTLQQTSHY- 154
+ +P++K V GG RQ+SV NAL + D AR LA K +FL + Q Y
Sbjct: 57 KVHPKVKKVAGGPERQDSVFNALLQATGDIVVIHDSARPLAT----KKMFLEVAQLGDYH 112
Query: 155 --CIAPYLPCYDTAIYYNE-----ALDREAIKLIQTPQLSHTKAL----QSALNQGDFKD 203
+A P DT E L+R I QTPQ L A +G
Sbjct: 113 GKVVAS--PARDTLKEVVEGKVIKTLNRSLIWHAQTPQAFRRDILLECHMRAKAEGFVGT 170
Query: 204 ESSAILQAFPDRVSYIEGSKDLHKLTTSGDLK 235
+ +++L+ + V +EGS K+T DL+
Sbjct: 171 DDASLLERYGYSVGVVEGSYWNVKITYPEDLE 202
>ref|NP_602396.1| (NC_003454) 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gb|AAL93695.1| (AE010466) 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
Length = 231
Score = 59.7 bits (143), Expect = 6e-08
Identities = 53/220 (24%), Positives = 102/220 (46%), Gaps = 19/220 (8%)
Query: 34 KQTSVVLLAAGESRRFSQTIKKQWLRSNHTPLWLSVYESFKEALDFKEIILVVSE----- 88
K+ + +L AAG+ +R + KQ+L PL+ S + E + +II++ ++
Sbjct: 10 KKVTFILAAAGQGKRMNLNSPKQFLDYRGEPLFYSSLKLAFENKNINDIIIITNKENLNF 69
Query: 89 -LDYIYIKRHYPEIK-LVKGGASRQESVRNAL-KIIDSAYTLTSDVARGLANIEALKNLF 145
+ Y K + ++K +V+GG+ RQ S+ NA+ KI D+ + D AR + ++
Sbjct: 70 MVKYCQNKNLFSKVKYIVEGGSERQYSIYNAIKKIKDTDIVIIQDAARPFLKDKYIEESL 129
Query: 146 LTLQQTSHYCIAPYLPCYDTAIYYN------EALDREAIKLIQTPQLSHTKALQSALNQG 199
L I + C DT + E +R+ + ++ TPQ + L+ A
Sbjct: 130 KILNDDCDGAIIG-VKCKDTIKIIDENGIVLETPNRDNLIMVHTPQTFKFEILKKAHQMA 188
Query: 200 DFKD----ESSAILQAFPDRVSYIEGSKDLHKLTTSGDLK 235
+ K+ + +++++ ++ I G D K+T DLK
Sbjct: 189 EEKNILATDDASLVEMISGKIKIIYGDYDNIKITVQEDLK 228
>ref|NP_224775.1| (NC_000922) Sugar Nucleotide Phosphorylase [Chlamydophila
pneumoniae CWL029]
ref|NP_300635.1| (NC_002491) sugar nucleotide phosphorylase [Chlamydophila
pneumoniae J138]
ref|NP_444721.1| (NC_002179) conserved hypothetical protein [Chlamydophila
pneumoniae AR39]
sp|Q9Z7X5|ISPD_CHLPN 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)
(MEP cytidylyltransferase) (MCT)
pir||H72061 sugar nucleotide phosphorylase - Chlamydophila pneumoniae (strains
CWL029 and AR39)
gb|AAD18718.1| (AE001642) Sugar Nucleotide Phosphorylase [Chlamydophila pneumoniae
CWL029]
gb|AAF38046.1| (AE002178) conserved hypothetical protein [Chlamydophila pneumoniae
AR39]
dbj|BAA98786.1| (AP002547) sugar nucleotide phosphorylase [Chlamydophila pneumoniae
J138]
Length = 211
Score = 59.7 bits (143), Expect = 6e-08
Identities = 45/162 (27%), Positives = 75/162 (45%), Gaps = 2/162 (1%)
Query: 35 QTSVVLLAAGESRRFSQTIKKQWLRSNHTPLWLSVYESFKEALDFKEIILVVSELDYIYI 94
++S++LL+ G+ RF I KQ+L N TPL L + E+I VV + Y
Sbjct: 3 KSSLILLSGGQGTRFGSKIPKQYLPLNGTPLVLHSLKILSSLPQIAEVI-VVCDPSYQET 61
Query: 95 KRHYPEIKLVKGGASRQESVRNALKIIDSAYTLTSDVARGLANIEALKNLFLTLQQTSHY 154
+ YP + G RQ+SV + L+ + + + D AR + + +L T ++
Sbjct: 62 FQEYP-VSFAIPGERRQDSVFSGLQQVSYPWVIIHDGARPFIYPDEIHDLLETAEKIGAT 120
Query: 155 CIAPYLPCYDTAIYYNEALDREAIKLIQTPQLSHTKALQSAL 196
+A +P LDR+ + +I TPQ T+ L+ L
Sbjct: 121 ALASPIPYTIKQRNPVRTLDRDNLAIIHTPQCIKTEILREGL 162
>ref|NP_297092.1| (NC_002620) conserved hypothetical protein [Chlamydia muridarum]
sp|Q9PJV8|ISPF_CHLMU 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS)
(MECDP-synthase)
pir||E81672 conserved hypothetical protein TC0718 [imported] - Chlamydia
muridarum (strain Nigg)
gb|AAF39530.1| (AE002340) conserved hypothetical protein [Chlamydia muridarum]
Length = 178
Score = 58.9 bits (141), Expect = 1e-07
Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 4/147 (2%)
Query: 249 IGMGFDTHAFIKD---KPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGE 305
+G+G D+H F+ KP VLGG++ + G +A+SDGD + HA+ +A +G
Sbjct: 19 VGIGQDSHRFLPSDNPKPCVLGGIIFENTPGFEANSDGDVVFHAICNAFSSVTHQVILGA 78
Query: 306 WFPDNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQL 365
D K K S + S ++ + TI + PK+ P A+ E ++++
Sbjct: 79 -LADELLKAKGISDSAVYLKEAVASLKPTQKISHLAITIEGQRPKLLPKISAMREKIAEI 137
Query: 366 LGLEKSQISLKATTMEKMGFIGKQEGL 392
L + +++ AT+ E + +G+ G+
Sbjct: 138 LRISLDSVNITATSGEGLTSMGQGHGV 164
>ref|NP_349781.1| (NC_003030) 4-diphosphocytidyl-2-methylerithritol synthase (Sugar
Nucleotide Phosphorylase family) [Clostridium
acetobutylicum]
sp|Q97EC9|ISPD_CLOAB 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)
(MEP cytidylyltransferase) (MCT)
gb|AAK81121.1|AE007813_8 (AE007813) 4-diphosphocytidyl-2-methylerithritol synthase (Sugar
Nucleotide Phosphorylase family) [Clostridium
acetobutylicum]
Length = 229
Score = 56.6 bits (135), Expect = 5e-07
Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 16/212 (7%)
Query: 39 VLLAAGESRRFSQTIKKQWLRSNHTPLWLSVYESFKEALDFKEIILVVSE------LDYI 92
+++AAG R KQ++ P+ + F+ + EII+V +E + I
Sbjct: 5 IIMAAGRGSRMKVNKNKQFILIQGKPILAYTIDKFQRSPLIDEIIIVAAESEINFCMQEI 64
Query: 93 YIKRHYPEIK-LVKGGASRQESVRNALKIIDSA-YTLTSDVARGLANIEALKNLFLTLQQ 150
K + ++K +V GG+ RQ+SV N LK + SA L D AR + + ++N ++
Sbjct: 65 VYKYKFNKVKNIVSGGSERQQSVMNGLKAVKSANIVLIHDGARPFVDNKIIENGIKYAEK 124
Query: 151 TSHYCIA----PYLPCYDTAIYYNEALDREAIKLIQTPQL----SHTKALQSALNQGDFK 202
+ + + +DR + +QTPQ S KA +A +G
Sbjct: 125 YGGAACGVQPKDTIKIKSEDGFSEKTIDRSKLFCVQTPQCFKYDSILKAHINAEKEGILA 184
Query: 203 DESSAILQAFPDRVSYIEGSKDLHKLTTSGDL 234
+ + I + ++V +GS + K+TT DL
Sbjct: 185 TDDTMIFEMSGNKVYLYDGSYENLKITTPDDL 216
>ref|NP_229194.1| (NC_000853) conserved hypothetical protein [Thermotoga maritima]
sp|Q9X1B3|ISPD_THEMA 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)
(MEP cytidylyltransferase) (MCT)
pir||B72259 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
gb|AAD36464.1|AE001792_4 (AE001792) conserved hypothetical protein [Thermotoga maritima]
Length = 222
Score = 56.2 bits (134), Expect = 7e-07
Identities = 50/208 (24%), Positives = 99/208 (47%), Gaps = 14/208 (6%)
Query: 39 VLLAAGESRRFSQTIKKQWLRSNHTPLWLSVYESFKEALDFKEIILVVSELDYIYIKR-- 96
+LLAAG+ R S+ + KQ+L L+ +F ++ +++V + +++
Sbjct: 5 ILLAAGKGERMSENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRV 64
Query: 97 -HYPEIKLVKGGASRQESVRNALKIIDS---AYTLTSDVARGLANIEALKNLFLTLQQTS 152
H + +V+GG +R +SVR+AL+ ++ +Y L D AR + + + ++T
Sbjct: 65 FHEKVLGIVEGGDTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETG 124
Query: 153 HYCIAPYLPCYDTAIYYN----EALDREAIKLIQTPQLSHTKALQSA-LNQGDFKDESSA 207
+A L D + E + R+ + I TPQ + L+ A N G++ D++
Sbjct: 125 AATLA--LKNSDALVRVENDRIEYIPRKGVYRILTPQAFSYEILKKAHENGGEWADDTEP 182
Query: 208 ILQAFPDRVSYIEGSKDLHKLTTSGDLK 235
+ Q +++ +EG K+T DL+
Sbjct: 183 V-QKLGVKIALVEGDPLCFKVTFKEDLE 209
>ref|NP_224743.1| (NC_000922) YgbB family hypothetical protein [Chlamydophila
pneumoniae CWL029]
ref|NP_300602.1| (NC_002491) YgbB family hypothetical protein [Chlamydophila
pneumoniae J138]
ref|NP_444756.1| (NC_002179) conserved hypothetical protein [Chlamydophila
pneumoniae AR39]
sp|Q9Z805|ISPF_CHLPN 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS)
(MECDP-synthase)
pir||D72065 conserved hypothetical protein CP0205 [imported] - Chlamydophila
pneumoniae (strains CWL029 and AR39)
gb|AAD18687.1| (AE001639) YgbB family hypothetical protein [Chlamydophila
pneumoniae CWL029]
gb|AAF38076.1| (AE002181) conserved hypothetical protein [Chlamydophila pneumoniae
AR39]
dbj|BAA98753.1| (AP002547) YgbB family hypothetical protein [Chlamydophila
pneumoniae J138]
Length = 176
Score = 55.1 bits (131), Expect = 1e-06
Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 12/150 (8%)
Query: 250 GMGFDTHAFIKD---KPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGA----IKGGD 302
G+G D+H F+ + KP +LGG++ D G +A+SDGD + HA+ +AI I G
Sbjct: 19 GIGQDSHRFLPESSTKPCILGGIIFDHCPGFQANSDGDIIFHAICNAISSVTNKIILGKV 78
Query: 303 IGEWFPDNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENL 362
E +E LK S ++ + TI PK A+ +N+
Sbjct: 79 ADELLQTRGITDSGIYLEEALK-----SLKPNQKISHVAITIEGSRPKFLCKLSALRQNI 133
Query: 363 SQLLGLEKSQISLKATTMEKMGFIGKQEGL 392
+Q++ L + I + AT+ E + G +G+
Sbjct: 134 AQVMNLTPTDIGITATSGEGLSDFGCGDGV 163
>ref|NP_297120.1| (NC_002620) conserved hypothetical protein [Chlamydia muridarum]
sp|Q9PJT1|ISPD_CHLMU 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)
(MEP cytidylyltransferase) (MCT)
pir||C81669 conserved hypothetical protein TC0747 [imported] - Chlamydia
muridarum (strain Nigg)
gb|AAF39554.1| (AE002343) conserved hypothetical protein [Chlamydia muridarum]
Length = 218
Score = 54.3 bits (129), Expect = 3e-06
Identities = 55/184 (29%), Positives = 79/184 (42%), Gaps = 23/184 (12%)
Query: 37 SVVLLAAGESRRFSQTIKKQWLRSNHTPLWLSVYESFKEALDFKEIILVVSELDYIYIKR 96
S+VLL G RF+ KQ+ PL L S+ ++L F + I+VV E Y +
Sbjct: 6 SLVLLGGGRGERFNSPQPKQYTPLCGEPLILHALHSY-QSLPFIQEIVVVCEEHYQELFS 64
Query: 97 HYPEIKLVKGGASRQESVRNALKIIDSAYTLTSDVARGLANIE--------ALKNLFLTL 148
Y +K GA RQ+SV + L+ + + D R ALK L
Sbjct: 65 PY-SVKFASPGALRQDSVFSGLQQVSLPWVCVHDGVRPFVYANEVSEVCSAALKTGAAAL 123
Query: 149 QQTSHYCIAPYLPCYDTAIYYNEALDREAIKLIQTPQLSHTKALQSAL---NQGDF--KD 203
++ Y I P LDR+A+ +I TPQ +T+ L+ L N DF D
Sbjct: 124 ATSATYTIKSRTPV--------RTLDRDAVAVIHTPQCINTEILKEGLLLANMMDFTLSD 175
Query: 204 ESSA 207
+S A
Sbjct: 176 DSEA 179
>ref|NP_565286.1| (NM_126305) putative sugar nucleotide phosphorylase [Arabidopsis
thaliana]
gb|AAF61714.1|AF230737_1 (AF230737) 4-Diphosphocytidyl-2C-methyl-D-erythritol synthase
[Arabidopsis thaliana]
dbj|BAB21592.1| (AB037876) 2-C-methyl-D-erythritol 4-phosphate cytidyltransferase
[Arabidopsis thaliana]
gb|AAC18936.2| (AC004136) putative sugar nucleotide phosphorylase [Arabidopsis
thaliana]
Length = 302
Score = 52.4 bits (124), Expect = 1e-05
Identities = 61/243 (25%), Positives = 105/243 (43%), Gaps = 21/243 (8%)
Query: 9 EAFKLSLESLEEDPFETKETLETLIKQTSVVLLAAGESRRFSQTIKKQWLRSNHTPLWLS 68
+A LS++ F+ + K SV+LLA G+ +R ++ KQ++ P+ L
Sbjct: 53 DALLLSIKCSSSTGFDNSNVV-VKEKSVSVILLAGGQGKRMKMSMPKQYIPLLGQPIALY 111
Query: 69 VYESFKEALDFKEIILVVSELDYIYIKRHYPE-----IKLVKGGASRQESVRNALKIID- 122
+ +F + KEI+ VV + + I Y E ++ G RQ+SV + L+ ID
Sbjct: 112 SFFTFSRMPEVKEIV-VVCDPFFRDIFEEYEESIDVDLRFAIPGKERQDSVYSGLQEIDV 170
Query: 123 -SAYTLTSDVARGLANIEALKNLFLTLQQTSHYCIAPYLPCYDTAIYYN------EALDR 175
S D AR L N E ++ + + +P T N + LDR
Sbjct: 171 NSELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLG--VPAKATIKEVNSDSLVVKTLDR 228
Query: 176 EAIKLIQTPQLSHTKALQSAL----NQGDFKDESSAILQAFPDRVSYIEGSKDLHKLTTS 231
+ + +QTPQ+ + L+ ++G + +I++ V +GS K+TT
Sbjct: 229 KTLWEMQTPQVIKPELLKKGFELVKSEGLEVTDDVSIVEYLKHPVYVSQGSYTNIKVTTP 288
Query: 232 GDL 234
DL
Sbjct: 289 DDL 291
>ref|NP_219975.1| (NC_000117) Sugar Nucleotide Phosphorylase [Chlamydia trachomatis]
sp|O84468|ISPD_CHLTR 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)
(MEP cytidylyltransferase) (MCT)
pir||B71511 probable sugar nucleotide phosphorylase - Chlamydia trachomatis
(serotype D, strain UW3/Cx)
gb|AAC68062.1| (AE001320) Sugar Nucleotide Phosphorylase [Chlamydia trachomatis]
Length = 219
Score = 50.8 bits (120), Expect = 3e-05
Identities = 41/160 (25%), Positives = 71/160 (43%), Gaps = 2/160 (1%)
Query: 37 SVVLLAAGESRRFSQTIKKQWLRSNHTPLWLSVYESFKEALDFKEIILVVSELDYIYIKR 96
S+VLL G+ RF+ KQ+ PL L ++ + L F + ++VV E Y +
Sbjct: 6 SLVLLGGGKGERFNSLQPKQYTHLCGEPLILHALHAY-QRLPFVQEVVVVCEEQYRELFL 64
Query: 97 HYPEIKLVKGGASRQESVRNALKIIDSAYTLTSDVARGLANIEALKNLFLTLQQTSHYCI 156
Y +K G RQ+SV + L+ + + + D R + + + ++T +
Sbjct: 65 PY-SVKFASPGTLRQDSVFSGLQQVSTPWVCIHDGVRPFVYADEVIEVCSAARKTGAAAL 123
Query: 157 APYLPCYDTAIYYNEALDREAIKLIQTPQLSHTKALQSAL 196
A + LDR+A+ +I TPQ T+ L+ L
Sbjct: 124 ASPATYTIKSCAPVRTLDRDALAVIHTPQCLDTEVLREGL 163
>ref|NP_240973.1| (NC_002570) BH0107~unknown conserved protein [Bacillus halodurans]
sp|Q9KGF8|ISPD_BACHD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)
(MEP cytidylyltransferase) (MCT)
dbj|BAB03826.1| (AP001507) BH0107~unknown conserved protein [Bacillus halodurans]
Length = 228
Score = 50.1 bits (118), Expect = 5e-05
Identities = 56/214 (26%), Positives = 92/214 (42%), Gaps = 18/214 (8%)
Query: 37 SVVLLAAGESRRFSQTIKKQWLRSNHTPLWLSVYESFKEALDFKEIILVVSELDYI---Y 93
SVV+ AAG+ +R KQ++ P+ F++ +++V +E +
Sbjct: 4 SVVIPAAGQGKRMRAGHNKQFIELGGKPILAHTLAVFEQDDWCTNVVIVANEQEIEEMGE 63
Query: 94 IKRHY---PEIKLVKGGASRQESVRNALKII-DSAYTLTSDVARGLANIEALKNLFLTLQ 149
+ Y K+V GG RQESV LK + L D AR + + +L T
Sbjct: 64 LANRYQISKAKKIVAGGRERQESVFAGLKALSQDGLVLIHDGARPFVTEKEIHSLVETAA 123
Query: 150 QTSHYCIAPYLPCYDTAIYYN-----EALDREAIKLIQTPQLSH----TKALQSALNQGD 200
+T +A +P DT E + RE + +QTPQ +A Q A N+
Sbjct: 124 KTHAAVLA--VPVKDTIKRVEGEAVLETMPREELWAVQTPQAFDLALIKQAHQKAENEQM 181
Query: 201 FKDESSAILQAFPDRVSYIEGSKDLHKLTTSGDL 234
+ +++++ V+ ++GS KLTT DL
Sbjct: 182 LGTDDASLMEWLGYSVAVVQGSYFNFKLTTPEDL 215
>ref|NP_438832.1| (NC_000907) conserved hypothetical protein [Haemophilus influenzae
Rd]
sp|O05029|ISPD_HAEIN 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)
(MEP cytidylyltransferase) (MCT)
pir||G64156 hypothetical protein HI0672 - Haemophilus influenzae (strain Rd
KW20)
gb|AAC22332.1| (U32750) conserved hypothetical protein [Haemophilus influenzae Rd]
Length = 225
Score = 48.9 bits (115), Expect = 1e-04
Identities = 65/211 (30%), Positives = 89/211 (41%), Gaps = 20/211 (9%)
Query: 39 VLLAAGESRRFSQTIKKQWLRSNHTPLWLSVYESFKEALDFKEIILVVSELD-YIYIKRH 97
VL AAG R KQ+L L + +IIL VS+ D YI
Sbjct: 8 VLPAAGVGSRMQADKPKQYLTLLGKTLLEHTLDVMLSYPAVSKIILAVSKDDPYISTLSL 67
Query: 98 YPEIKLVKGGASRQESVRNALKII--DSAYTLTSDVARGLANIEALKNLFLTLQQTSHYC 155
P+I+LV+GG +R ESV N L I +A+ L D AR + L L ++
Sbjct: 68 DPKIQLVEGGTTRAESVLNGLNAIAEKNAWVLVHDAARPCLQHADIDKL-LAIEDKQGAI 126
Query: 156 IAPYLPCYDTAIYYN------EALDREAIKLIQTPQLSHTKALQSALNQG-----DFKDE 204
+A +P DT + + DR + TPQ L+ AL+ G + DE
Sbjct: 127 LA--IPVTDTIKRADNQQCIVKTEDRSQLWQAMTPQFFPVDILRDALSTGIQQGANITDE 184
Query: 205 SSAI-LQAFPDRVSYIEGSKDLHKLTTSGDL 234
+SAI L F R + G D K+T DL
Sbjct: 185 ASAIELAGF--RPHLVAGRSDNLKVTRPEDL 213
>ref|NP_289296.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
ref|NP_311628.1| (NC_002695) 4-diphosphocytidyl-2C-methyl-D-erythritol synthase
[Escherichia coli O157:H7]
sp|Q8X7Y4|ISPD_ECO57 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)
(MEP cytidylyltransferase) (MCT) (CDP-ME synthetase)
gb|AAG57854.1|AE005502_8 (AE005502) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
dbj|BAB37024.1| (AP002562) 4-diphosphocytidyl-2C-methyl-D-erythritol synthase
[Escherichia coli O157:H7]
Length = 236
Score = 48.9 bits (115), Expect = 1e-04
Identities = 62/214 (28%), Positives = 91/214 (41%), Gaps = 22/214 (10%)
Query: 39 VLLAAGESRRFSQTIKKQWLR-SNHTPLWLSVYESFKEALDFKEIILVVSELDYIYIK-- 95
V+ AAG RR KQ+L N T L SVY K +++ +S D + +
Sbjct: 11 VVPAAGFGRRMQTECPKQYLSIGNQTILEHSVYALLAHPR-VKRVVIAISPGDSRFAQLP 69
Query: 96 -RHYPEIKLVKGGASRQESVRNALKII-DSAYTLTSDVARGLANIEALKNLFLTLQQTSH 153
++P+I +V GG R +SV LK D+ + L D AR + + L L L L +TS
Sbjct: 70 LANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARL-LALSETSR 128
Query: 154 YCIAPYLPCYDT---------AIYYNEALDREAIKLIQTPQLSHTKALQS----ALNQGD 200
P DT AI + +DR + TPQ + L ALN+G
Sbjct: 129 TGGILAAPVRDTMKRAEPGKNAIAH--TVDRNGLWHALTPQFFPRELLHDCLTRALNEGA 186
Query: 201 FKDESSAILQAFPDRVSYIEGSKDLHKLTTSGDL 234
+ ++ L+ +EG D K+T DL
Sbjct: 187 AITDEASALEYCGFHPQLVEGRADNIKVTRPEDL 220
>ref|NP_246547.1| (NC_002663) unknown [Pasteurella multocida]
sp|P57953|ISPD_PASMU 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)
(MEP cytidylyltransferase) (MCT)
gb|AAK03692.1| (AE006198) unknown [Pasteurella multocida]
Length = 238
Score = 48.5 bits (114), Expect = 1e-04
Identities = 62/216 (28%), Positives = 91/216 (41%), Gaps = 25/216 (11%)
Query: 39 VLLAAGESRRFSQTIKKQWLRSNHTPLWLSVYESFKEALDFKEIILVVSELDYIYIKR-- 96
V+ AAG R KQ+L + + ++IIL V+ D YI
Sbjct: 15 VVPAAGIGSRMQMDKPKQYLHIHGKTILEHTLSVLLGYPLIEKIILAVAANDP-YISTCP 73
Query: 97 --HYPEIKLVKGGASRQESVRNALKIIDSA-------YTLTSDVARGLANIEALKNLFLT 147
+P+I+LV+GG+SR +SV N L + SA + + D AR + L L
Sbjct: 74 LLTHPKIQLVEGGSSRADSVLNGLNAVKSAVQNSEDFWVMVHDAARPCLTHQDLDKLVQV 133
Query: 148 LQQTSHYCIAPYL-----PCYDTAIYYNEALDREAIKLIQTPQL----SHTKALQSALNQ 198
Q P ++ I+Y E DR + L QTPQ + +AL+ AL Q
Sbjct: 134 EDQNGAILAIPATDTIKRALHNQQIHYTE--DRSQLWLAQTPQFFPIATLAQALEQALAQ 191
Query: 199 G-DFKDESSAILQAFPDRVSYIEGSKDLHKLTTSGD 233
G DE+SA ++ R + G D K+T D
Sbjct: 192 GLQVTDEASA-MEFAGFRPHLVAGRSDNIKVTRPED 226
>ref|NP_417227.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
sp|Q46893|ISPD_ECOLI 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)
(MEP cytidylyltransferase) (MCT) (CDP-ME synthetase)
pir||G65055 hypothetical protein b2747 - Escherichia coli (strain K-12)
pdb|1INI|A Chain A, Crystal Structure Of 4-Diphosphocytidyl-2-C-
Methylerythritol (Cdp-Me) Synthetase (Ygbp) Involved In
Mevalonate Independent Isoprenoid Biosynthesis,
Complexed With Cdp-Me And Mg2+
pdb|1I52|A Chain A, Crystal Structure Of 4-Diphosphocytidyl-2-C-
Methylerythritol (Cdp-Me) Synthase (Ygbp) Involved In
Mevalonate Independent Isoprenoid Biosynthesis
pdb|1INJ|A Chain A, Crystal Structure Of The Apo Form Of
4-Diphosphocytidyl-2-C- Methylerythritol (Cdp-Me)
Synthetase (Ygbp) Involved In Mevalonate Independent
Isoprenoid Biosynthesis
gb|AAA69257.1| (U29579) ORF_f236 [Escherichia coli]
gb|AAC75789.1| (AE000358) orf, hypothetical protein [Escherichia coli K12]
dbj|BAA90761.1| (AB037143) 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
[Escherichia coli]
gb|AAF43207.1|AF230736_1 (AF230736) 4-diphosphocytidyl-2C-methyl-D-erythritol synthase
[Escherichia coli]
Length = 236
Score = 47.0 bits (110), Expect = 4e-04
Identities = 61/214 (28%), Positives = 91/214 (42%), Gaps = 22/214 (10%)
Query: 39 VLLAAGESRRFSQTIKKQWLR-SNHTPLWLSVYESFKEALDFKEIILVVSELDYIYIK-- 95
V+ AAG RR KQ+L N T L SV+ K +++ +S D + +
Sbjct: 11 VVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPR-VKRVVIAISPGDSRFAQLP 69
Query: 96 -RHYPEIKLVKGGASRQESVRNALKII-DSAYTLTSDVARGLANIEALKNLFLTLQQTSH 153
++P+I +V GG R +SV LK D+ + L D AR + + L L L L +TS
Sbjct: 70 LANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARL-LALSETSR 128
Query: 154 YCIAPYLPCYDT---------AIYYNEALDREAIKLIQTPQLSHTKALQS----ALNQGD 200
P DT AI + +DR + TPQ + L ALN+G
Sbjct: 129 TGGILAAPVRDTMKRAEPGKNAIAH--TVDRNGLWHALTPQFFPRELLHDCLTRALNEGA 186
Query: 201 FKDESSAILQAFPDRVSYIEGSKDLHKLTTSGDL 234
+ ++ L+ +EG D K+T DL
Sbjct: 187 TITDEASALEYCGFHPQLVEGRADNIKVTRPEDL 220
>ref|NP_296323.1| (NC_001263) conserved hypothetical protein [Deinococcus
radiodurans]
sp|Q9RR90|ISPD_DEIRA 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)
(MEP cytidylyltransferase) (MCT)
pir||D75254 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF12141.1|AE002089_4 (AE002089) conserved hypothetical protein [Deinococcus radiodurans]
Length = 232
Score = 44.3 bits (103), Expect = 0.003
Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 11/142 (7%)
Query: 102 KLVKGGASRQESVRNALKIIDSAYTLTSDVARGLANIEALKNLFLTLQQTSHYCIAPYLP 161
+ + GG +RQ SVR L+ ++ L D AR + L + T +A LP
Sbjct: 71 RAIVGGETRQGSVRRLLEATEAGTVLIHDAARPFVPPPVILALLDAIAATGAATVA--LP 128
Query: 162 CYDTAI-----YYNEALDREAIKLIQTPQLSHTKALQSALNQGDFKD----ESSAILQAF 212
DT + + + + RE + +QTPQ + L A + + + + + +L
Sbjct: 129 VADTLVRAEGQSWGQLVPREGLWAVQTPQGFRRELLLQAHARAEAEQYAATDDAGLLARL 188
Query: 213 PDRVSYIEGSKDLHKLTTSGDL 234
+V + G L K+TT GDL
Sbjct: 189 GVQVRLVPGDARLFKVTTPGDL 210
>ref|NP_489207.1| (NC_003272) 4-diphosphocytidyl-2C-methyl-D-erythritol synthase
[Nostoc sp. PCC 7120]
sp|Q8YLX9|ISPD_ANASP 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)
(MEP cytidylyltransferase) (MCT)
dbj|BAB76866.1| (AP003598) 4-diphosphocytidyl-2C-methyl-D-erythritol synthase
[Nostoc sp. PCC 7120]
Length = 228
Score = 43.9 bits (102), Expect = 0.003
Identities = 55/217 (25%), Positives = 90/217 (41%), Gaps = 24/217 (11%)
Query: 38 VVLLAAGESRRFSQTIKKQWLRSNHTPLWLSVYESFKEALDFKEIILVVSELDYIYIKRH 97
+++ AAG +R K L P+ + + A + I ++ D+ K
Sbjct: 3 LLIPAAGVGKRMGCDRNKLLLEVRSQPIIAWTLLAAQAASEISWIGIISQPTDWPDFKSI 62
Query: 98 YPEIKLVK------GGASRQESVRNALKIIDSA--YTLTSDVARGLANIEALKNLFLTLQ 149
++L K GG++RQESV N L+ + +A L D AR LA NL +
Sbjct: 63 LANLQLTKPVEFILGGSTRQESVYNGLQALPTAAEQVLIHDGARCLAT----PNLLNSCA 118
Query: 150 QTSHYC--IAPYLPCYDTAIYYNE------ALDREAIKLIQTPQLSHTKALQ----SALN 197
Q +C + +P DT +E DR + QTPQ + + L+ +
Sbjct: 119 QAIRHCSGLIAAVPVKDTIKVVDEDGIIQNTPDRRNLWAAQTPQGFNVELLKQCHAEGVR 178
Query: 198 QGDFKDESSAILQAFPDRVSYIEGSKDLHKLTTSGDL 234
QG + +A+ + V +EG + K+TT DL
Sbjct: 179 QGWEVTDDAALFEKCGIEVQIVEGEETNLKVTTPQDL 215
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.318 0.136 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 239,119,228
Number of Sequences: 1026957
Number of extensions: 9732512
Number of successful extensions: 25063
Number of sequences better than 1.0e-02: 81
Number of HSP's better than 0.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 24957
Number of HSP's gapped (non-prelim): 83
length of query: 406
length of database: 324,149,939
effective HSP length: 123
effective length of query: 283
effective length of database: 197,834,228
effective search space: 55987086524
effective search space used: 55987086524
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 98 (42.4 bits)