BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645636|ref|NP_207812.1| hypothetical protein
[Helicobacter pylori 26695]
(278 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207812.1| (NC_000915) hypothetical protein [Helicoba... 571 e-162
ref|NP_223121.1| (NC_000921) putative [Helicobacter pylori ... 556 e-158
ref|NP_326551.1| (NC_002771) DNA POLYMERASE I (POL I) [Myco... 63 4e-09
ref|NP_212682.1| (NC_001318) DNA polymerase I (polA) [Borre... 59 6e-08
emb|CAB56098.1| (AJ238758) DNA polymerase I [Rickettsia ric... 54 2e-06
emb|CAB56079.1| (AJ238760) DNA polymerase I [Rickettsia mon... 53 3e-06
sp|Q9RLB6|DPO1_RICHE DNA polymerase I (POL I) >gi|5912332|e... 53 3e-06
emb|CAB56103.1| (AJ238759) DNA polymerase I [Rickettsia sib... 52 6e-06
ref|NP_360843.1| (NC_003103) DNA polymerase I (POL I) [EC:2... 52 6e-06
emb|CAB56093.1| (AJ238761) DNA polymerase I [Rickettsia rhi... 52 7e-06
sp|P56105|DPO1_HELPY DNA polymerase I (POL I) 52 9e-06
ref|NP_224081.1| (NC_000921) DNA POLYMERASE I [Helicobacter... 52 9e-06
ref|NP_208261.1| (NC_000915) DNA polymerase I (polA) [Helic... 52 9e-06
ref|NP_221127.1| (NC_000963) DNA POLYMERASE I (polA) [Ricke... 51 1e-05
ref|NP_220007.1| (NC_000117) DNA Polymerase I [Chlamydia tr... 50 2e-05
sp|Q9RAA9|DPO1_RICFE DNA polymerase I (POL I) >gi|5912337|e... 50 2e-05
ref|NP_281529.1| (NC_002163) DNA polymerase I [Campylobacte... 49 6e-05
ref|NP_268299.1| (NC_002662) DNA polymerase I (EC 2.7.7.7) ... 48 1e-04
ref|NP_297153.1| (NC_002620) DNA polymerase I [Chlamydia mu... 48 1e-04
ref|NP_470936.1| (NC_003212) DNA polymerase I [Listeria inn... 47 2e-04
ref|NP_465090.1| (NC_003210) DNA polymerase I [Listeria mon... 47 2e-04
gb|AAC98908.1| (AF028719) DNA polymerase type I [Rhodotherm... 47 2e-04
gb|AAD28505.1|AF121780_1 (AF121780) DNA polymerase I [Rhodo... 47 2e-04
ref|NP_606485.1| (NC_003485) DNA-directed DNA polymerase I ... 47 2e-04
ref|NP_658615.1| (NC_003995) DNA_pol_A, DNA polymerase fami... 47 3e-04
sp|O32801|DPO1_LACLC DNA POLYMERASE I (POL I) >gi|2281294|g... 46 4e-04
ref|NP_243046.1| (NC_002570) 5'-3' exonuclease [Bacillus ha... 46 5e-04
sp|Q59156|DPO1_ANATH DNA polymerase I (POL I) >gi|1405438|e... 45 7e-04
ref|NP_268564.1| (NC_002737) DNA-directed DNA polymerase I ... 44 0.001
sp|P06229|EXO5_BPT5 Exodeoxyribonuclease (5'exonuclease) >g... 44 0.002
ref|NP_570332.1| (NC_003390) exonuclease [Cyanophage P60] >... 44 0.003
pir||JX0359 DNA-directed DNA polymerase (EC 2.7.7.7) - Ther... 43 0.003
dbj|BAA06775.1| (D32013) DNA Polymerase [Thermus aquaticus] 43 0.003
pir||A32949 DNA-directed DNA polymerase (EC 2.7.7.7) - Stre... 43 0.003
ref|NP_357626.1| (NC_003098) DNA polymerase I [Streptococcu... 43 0.003
ref|NP_344582.1| (NC_003028) DNA polymerase I [Streptococcu... 43 0.003
pdb|1TAQ| Structure Of Taq Dna Polymerase 43 0.004
pdb|1TAU|A Chain A, Structure Of Dna Polymerase 43 0.004
sp|P19821|DPO1_THEAQ DNA polymerase I, thermostable (Taq po... 43 0.004
gb|AAL47553.1| (AY065997) DNA polymerase [Thermoanaerobacte... 42 0.006
pdb|1EXN|B Chain B, T5 5'-Exonuclease >gi|2392326|pdb|1EXN|... 42 0.006
ref|NP_622526.1| (NC_003869) DNA polymerase I - 3'-5' exonu... 42 0.006
ref|NP_110067.1| (NC_000912) 5'-3' exonuclease (complete) [... 42 0.007
pdb|1XO1|A Chain A, T5 5'-Exonuclease Mutant K83a >gi|14719... 42 0.010
ref|NP_240243.1| (NC_002528) DNA polymerase I [Buchnera sp.... 42 0.010
>ref|NP_207812.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64647 hypothetical protein HP1022 - Helicobacter pylori (strain 26695)
gb|AAD08070.1| (AE000610) H. pylori predicted coding region HP1022 [Helicobacter
pylori 26695]
Length = 278
Score = 571 bits (1471), Expect = e-162
Identities = 278/278 (100%), Positives = 278/278 (100%)
Query: 1 MHSRTLLLDIDCVIPNIVRRLLSNKTLPKRFAAYSLQEVGVIFLTTQILSIMHKTRCSKT 60
MHSRTLLLDIDCVIPNIVRRLLSNKTLPKRFAAYSLQEVGVIFLTTQILSIMHKTRCSKT
Sbjct: 1 MHSRTLLLDIDCVIPNIVRRLLSNKTLPKRFAAYSLQEVGVIFLTTQILSIMHKTRCSKT 60
Query: 61 LFFITRGRESFRYQLCDHYKQKRHQFDEDFKALLRTLKIAIVEKYPLKKGAKIQGEHCFE 120
LFFITRGRESFRYQLCDHYKQKRHQFDEDFKALLRTLKIAIVEKYPLKKGAKIQGEHCFE
Sbjct: 61 LFFITRGRESFRYQLCDHYKQKRHQFDEDFKALLRTLKIAIVEKYPLKKGAKIQGEHCFE 120
Query: 121 YEADDIISFYKKKDPNNYVIASMDKDILYSNRGSHFNLKTNAFFNVSQKEAHFFAYYQCV 180
YEADDIISFYKKKDPNNYVIASMDKDILYSNRGSHFNLKTNAFFNVSQKEAHFFAYYQCV
Sbjct: 121 YEADDIISFYKKKDPNNYVIASMDKDILYSNRGSHFNLKTNAFFNVSQKEAHFFAYYQCV 180
Query: 181 VGDKGDNIKGVKGIGGFNYKDFLNEDAKEHELWEQIIQAFKIKEDLSDSEAKEKALLNMR 240
VGDKGDNIKGVKGIGGFNYKDFLNEDAKEHELWEQIIQAFKIKEDLSDSEAKEKALLNMR
Sbjct: 181 VGDKGDNIKGVKGIGGFNYKDFLNEDAKEHELWEQIIQAFKIKEDLSDSEAKEKALLNMR 240
Query: 241 LVNMHQMTHHGVIKLWEPEFKKTFFPKKPQRPDFKRIS 278
LVNMHQMTHHGVIKLWEPEFKKTFFPKKPQRPDFKRIS
Sbjct: 241 LVNMHQMTHHGVIKLWEPEFKKTFFPKKPQRPDFKRIS 278
>ref|NP_223121.1| (NC_000921) putative [Helicobacter pylori J99]
pir||E71936 hypothetical protein jhp0402 - Helicobacter pylori (strain J99)
gb|AAD05983.1| (AE001474) putative [Helicobacter pylori J99]
Length = 288
Score = 556 bits (1433), Expect = e-158
Identities = 269/277 (97%), Positives = 273/277 (98%)
Query: 2 HSRTLLLDIDCVIPNIVRRLLSNKTLPKRFAAYSLQEVGVIFLTTQILSIMHKTRCSKTL 61
HSRTLLLDIDCVIPNIVRRLLSNKTLPKRFA YSLQEVGVIFLTTQILSIM KTRCSKTL
Sbjct: 12 HSRTLLLDIDCVIPNIVRRLLSNKTLPKRFATYSLQEVGVIFLTTQILSIMRKTRCSKTL 71
Query: 62 FFITRGRESFRYQLCDHYKQKRHQFDEDFKALLRTLKIAIVEKYPLKKGAKIQGEHCFEY 121
FFITRGRESFRYQLCDHYKQKRHQFDEDF++LL+ LKIA+VEKYPLKKGAKIQGEHCFEY
Sbjct: 72 FFITRGRESFRYQLCDHYKQKRHQFDEDFRSLLKALKIALVEKYPLKKGAKIQGEHCFEY 131
Query: 122 EADDIISFYKKKDPNNYVIASMDKDILYSNRGSHFNLKTNAFFNVSQKEAHFFAYYQCVV 181
EADDIISFYKKKDPNNYVIASMDKDILYSNRGSHFNLKTNAFFNVSQKEAHFFAYYQCVV
Sbjct: 132 EADDIISFYKKKDPNNYVIASMDKDILYSNRGSHFNLKTNAFFNVSQKEAHFFAYYQCVV 191
Query: 182 GDKGDNIKGVKGIGGFNYKDFLNEDAKEHELWEQIIQAFKIKEDLSDSEAKEKALLNMRL 241
GDKGDNIKGVKGIGGFNYKDFLNEDAKEHELWEQIIQAFKIKEDLSDSEAKEKALLNMRL
Sbjct: 192 GDKGDNIKGVKGIGGFNYKDFLNEDAKEHELWEQIIQAFKIKEDLSDSEAKEKALLNMRL 251
Query: 242 VNMHQMTHHGVIKLWEPEFKKTFFPKKPQRPDFKRIS 278
VNMHQMTHHGVIKLWEPEFKK FFPKKPQRPDFKRIS
Sbjct: 252 VNMHQMTHHGVIKLWEPEFKKAFFPKKPQRPDFKRIS 288
>ref|NP_326551.1| (NC_002771) DNA POLYMERASE I (POL I) [Mycoplasma pulmonis]
sp|Q98PK2|EX53_MYCPU Probable 5'-3' exonuclease
emb|CAC13893.1| (AL445565) DNA POLYMERASE I (POL I) [Mycoplasma pulmonis]
Length = 297
Score = 62.8 bits (151), Expect = 4e-09
Identities = 48/190 (25%), Positives = 89/190 (46%), Gaps = 20/190 (10%)
Query: 70 SFRYQLCDHYKQKRHQFDEDFKALLRTLKIAIVEKYPLKKGAKIQGEHCFEYEADDIISF 129
++R+ LC YK +R + +++F + + ++ I++ L G +G +EADD+I+
Sbjct: 67 TWRHDLCKEYKSQRSKMEDEFWNIFKAIR-EILDSINLNSGG-FRG-----HEADDVIAT 119
Query: 130 Y--KKKDPNNYVIASMDKDIL-------YSNRGSHFN--LKTNAFFNVSQKEAHFFAYYQ 178
K KD N I S DKD+L Y + + F+ Q E ++
Sbjct: 120 ITSKFKDENQIYIFSRDKDLLQLIDKNVYITHDNELKNLISIENFYQNFQLEPDQIVDFK 179
Query: 179 CVVGDKGDNIKGVKGIGGFNYKDFLNEDAKEHELWEQIIQAFKIKEDLSDS--EAKEKAL 236
+ GD DN+KG+ GIG K+ LN ++++ + I + + KE+AL
Sbjct: 180 AIAGDSSDNLKGIAGIGEKGAKNLLNNFKSLEKIFDSLESTNLISKAQKQKIRDGKEQAL 239
Query: 237 LNMRLVNMHQ 246
++V +++
Sbjct: 240 FLKKIVTLNK 249
>ref|NP_212682.1| (NC_001318) DNA polymerase I (polA) [Borrelia burgdorferi]
sp|O51498|DPO1_BORBU DNA polymerase I (POL I)
pir||C70168 DNA polymerase I (polA) homolog - Lyme disease spirochete
gb|AAC66909.1| (AE001156) DNA polymerase I (polA) [Borrelia burgdorferi]
Length = 908
Score = 58.9 bits (141), Expect = 6e-08
Identities = 61/214 (28%), Positives = 92/214 (42%), Gaps = 34/214 (15%)
Query: 59 KTLFFITRGRE-------------SFRYQLCDHYKQKRHQFDEDFKALLRTLKIAIVEKY 105
KTLFFI + + +FR Q YK R +D + +K +++
Sbjct: 41 KTLFFIIKEKNPEHLIITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLK-- 98
Query: 106 PLKKGAKIQGEHCFEYEADDII-SFYKKKDPNNYV--IASMDKDILY--SNRGSHFNLKT 160
AKI YEADD++ SF KK NNY+ I S DKD+L S ++
Sbjct: 99 -----AKIPIFEMEGYEADDLLASFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIEN 153
Query: 161 NAFFNVSQK--------EAHFFAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNEDAKEHEL 212
N+F + + + Y +VGD+ DNI G+KGIG + L E +
Sbjct: 154 NSFIEMDNEYVTKKFGVNSFQIKDYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGI 213
Query: 213 WEQIIQAFKIKEDLSDSEAKEKALLNMRLVNMHQ 246
+ + K +L E KE A L+ LV++ +
Sbjct: 214 YSNLEIINKKHRELLIKE-KENAFLSYELVSLEE 246
>emb|CAB56098.1| (AJ238758) DNA polymerase I [Rickettsia rickettsii]
Length = 875
Score = 53.9 bits (128), Expect = 2e-06
Identities = 55/228 (24%), Positives = 96/228 (41%), Gaps = 33/228 (14%)
Query: 37 QEVGVIF-LTTQILSIMHKTRCSKTLFFITRGRESFRYQLCDHYKQKRHQFDEDFKALLR 95
+ VG ++ T+ +L ++ + G ++FR+Q+ YK R ED L
Sbjct: 32 EPVGALYGFTSMLLKLLSDFKPKHVAVVFDSGGKNFRHQIYPDYKANRPPPPEDLIVQLP 91
Query: 96 TLK-IAIVEKYPL--KKGAKIQGEHCFEYEADDIISFYKKKDP---NNYVIASMDKDILY 149
++ +A +P+ K G YEADDII+ + K + VI S DKD+L
Sbjct: 92 LVRDVASNLNFPILEKNG----------YEADDIIATFATKTAALGEHVVIISSDKDLLQ 141
Query: 150 ---SNRGSHFNLK---------TNAFFNVSQKEAHFFAYYQCVVGDKGDNIKGVKGIGGF 197
N + LK F S K A ++GD+ DNI GV IG
Sbjct: 142 LMTENIKIYDPLKGKYITEDDVVKKFGTTSDKLREVMA----LIGDRSDNIPGVPSIGPK 197
Query: 198 NYKDFLNEDAKEHELWEQIIQAFKIKEDLSDSEAKEKALLNMRLVNMH 245
+ + ++ + Q +K+ + ++E AL++ +L+ ++
Sbjct: 198 TASSLITQFGSVENIFNSLDQVSSVKQRKTLQNSRETALISWQLIGLN 245
>emb|CAB56079.1| (AJ238760) DNA polymerase I [Rickettsia montanensis]
Length = 875
Score = 53.1 bits (126), Expect = 3e-06
Identities = 55/227 (24%), Positives = 95/227 (41%), Gaps = 33/227 (14%)
Query: 37 QEVGVIF-LTTQILSIMHKTRCSKTLFFITRGRESFRYQLCDHYKQKRHQFDEDFKALLR 95
+ VG ++ T+ +L ++ + G ++FR+Q+ YK R ED L
Sbjct: 32 EPVGALYGFTSMLLKLLSDFKPKHVAVVFDSGGKNFRHQIYPDYKANRPPPPEDLIVQLP 91
Query: 96 TLK-IAIVEKYPL--KKGAKIQGEHCFEYEADDIISFYKKKDP---NNYVIASMDKDILY 149
++ +A +P+ K G YEADDII+ + K + VI S DKD+L
Sbjct: 92 LVRDVASNLNFPILEKNG----------YEADDIIATFATKTAALGEHVVIISSDKDLLQ 141
Query: 150 ---SNRGSHFNLK---------TNAFFNVSQKEAHFFAYYQCVVGDKGDNIKGVKGIGGF 197
N + LK F S K A ++GD+ DNI GV IG
Sbjct: 142 LMTKNIKIYDPLKGKYITEDDVVTKFGTTSNKLREVMA----LIGDRSDNIPGVPSIGPK 197
Query: 198 NYKDFLNEDAKEHELWEQIIQAFKIKEDLSDSEAKEKALLNMRLVNM 244
+ + ++ + Q +K+ + ++E AL++ +L+ +
Sbjct: 198 TASSLITQFGSVENIFNSLDQVSSVKQRETLQNSREAALISWQLIGL 244
>sp|Q9RLB6|DPO1_RICHE DNA polymerase I (POL I)
emb|CAB56073.1| (AJ238762) DNA polymerase I [Rickettsia helvetica]
Length = 921
Score = 53.1 bits (126), Expect = 3e-06
Identities = 54/227 (23%), Positives = 93/227 (40%), Gaps = 33/227 (14%)
Query: 37 QEVGVIF-LTTQILSIMHKTRCSKTLFFITRGRESFRYQLCDHYKQKRHQFDEDFKALLR 95
+ VG ++ T+ +L ++ + G ++FR+ + YK R ED L
Sbjct: 32 EPVGALYGFTSMLLKLLSDFKPKHVAVVFDSGGKNFRHYIYPEYKANRPPPPEDLIVQLP 91
Query: 96 TLK-IAIVEKYPL--KKGAKIQGEHCFEYEADDIISFYKKKDP---NNYVIASMDKDILY 149
++ +A +P+ K G YEADDII+ + K N VI S DKD+L
Sbjct: 92 LVRDVASNLNFPILEKNG----------YEADDIIATFATKTAALGENVVIISSDKDLLQ 141
Query: 150 SN----------RGSHFNLK--TNAFFNVSQKEAHFFAYYQCVVGDKGDNIKGVKGIGGF 197
RG + F S K A ++GD+ DNI GV IG
Sbjct: 142 LMSENIKIYDPLRGKYITEDDVVKKFGTTSDKLREVMA----LIGDRSDNIPGVPSIGPK 197
Query: 198 NYKDFLNEDAKEHELWEQIIQAFKIKEDLSDSEAKEKALLNMRLVNM 244
+ + ++ + Q +K+ + ++E AL++ +L+ +
Sbjct: 198 TASSLITQFGSVENIFNSLDQVSSVKQRETLQNSREAALISWQLIGL 244
>emb|CAB56103.1| (AJ238759) DNA polymerase I [Rickettsia sibirica]
Length = 875
Score = 52.4 bits (124), Expect = 6e-06
Identities = 55/228 (24%), Positives = 96/228 (41%), Gaps = 33/228 (14%)
Query: 37 QEVGVIF-LTTQILSIMHKTRCSKTLFFITRGRESFRYQLCDHYKQKRHQFDEDFKALLR 95
+ VG ++ T+ +L ++ + G ++FR+Q+ YK R ED L
Sbjct: 32 EPVGALYGFTSMLLKLLSDFKPKHVAVVFDSGGKNFRHQIYPDYKANRPPPPEDLIIQLP 91
Query: 96 TLK-IAIVEKYPL--KKGAKIQGEHCFEYEADDIISFYKKKDPN---NYVIASMDKDILY 149
++ +A +P+ K G YEADDII+ + K + VI S DKD+L
Sbjct: 92 LVRDVASNLNFPILEKNG----------YEADDIIATFATKTAALGAHVVIISSDKDLLQ 141
Query: 150 ---SNRGSHFNLK---------TNAFFNVSQKEAHFFAYYQCVVGDKGDNIKGVKGIGGF 197
N + LK F S K A ++GD+ DNI GV IG
Sbjct: 142 LMTENIKIYDPLKGKYITEDDVVKKFGTTSDKLREVMA----LIGDRSDNIPGVPSIGPK 197
Query: 198 NYKDFLNEDAKEHELWEQIIQAFKIKEDLSDSEAKEKALLNMRLVNMH 245
+ + ++ + Q +K+ + ++E AL++ +L+ ++
Sbjct: 198 TASSLITQFGSVENIFNSLDQVSSVKQRETLQNSREAALISWQLIGLN 245
>ref|NP_360843.1| (NC_003103) DNA polymerase I (POL I) [EC:2.7.7.7] [Rickettsia
conorii]
gb|AAL03744.1| (AE008667) DNA polymerase I (POL I) [EC:2.7.7.7] [Rickettsia
conorii]
Length = 875
Score = 52.4 bits (124), Expect = 6e-06
Identities = 55/228 (24%), Positives = 96/228 (41%), Gaps = 33/228 (14%)
Query: 37 QEVGVIF-LTTQILSIMHKTRCSKTLFFITRGRESFRYQLCDHYKQKRHQFDEDFKALLR 95
+ VG ++ T+ +L ++ + G ++FR+Q+ YK R ED L
Sbjct: 32 EPVGALYGFTSMLLKLLSDFKPKHVAVVFDSGGKNFRHQIYPDYKANRPPPPEDLIIQLP 91
Query: 96 TLK-IAIVEKYPL--KKGAKIQGEHCFEYEADDIISFYKKKDPN---NYVIASMDKDILY 149
++ +A +P+ K G YEADDII+ + K + VI S DKD+L
Sbjct: 92 LVRDVASNLNFPILEKNG----------YEADDIIATFATKTAALGAHVVIISSDKDLLQ 141
Query: 150 ---SNRGSHFNLK---------TNAFFNVSQKEAHFFAYYQCVVGDKGDNIKGVKGIGGF 197
N + LK F S K A ++GD+ DNI GV IG
Sbjct: 142 LMTENIKIYDPLKGKYITEDDVVKKFGTTSDKLREVMA----LIGDRSDNIPGVPSIGPK 197
Query: 198 NYKDFLNEDAKEHELWEQIIQAFKIKEDLSDSEAKEKALLNMRLVNMH 245
+ + ++ + Q +K+ + ++E AL++ +L+ ++
Sbjct: 198 TASSLITQFGSVENIFNSLDQVSSVKQRETLQNSREAALISWQLIGLN 245
>emb|CAB56093.1| (AJ238761) DNA polymerase I [Rickettsia rhipicephali]
Length = 875
Score = 52.0 bits (123), Expect = 7e-06
Identities = 54/227 (23%), Positives = 94/227 (40%), Gaps = 33/227 (14%)
Query: 37 QEVGVIF-LTTQILSIMHKTRCSKTLFFITRGRESFRYQLCDHYKQKRHQFDEDFKALLR 95
+ VG ++ T+ +L ++ + G ++FR+Q+ YK R ED L
Sbjct: 32 EPVGALYGFTSMLLKLLSDFKPQHVAVVFDSGGKNFRHQIYSDYKANRPPPPEDLIVQLP 91
Query: 96 TLK-IAIVEKYPL--KKGAKIQGEHCFEYEADDIISFYKKKDP---NNYVIASMDKDILY 149
++ +A +P+ K G YEADDII+ + K + VI S DKD+L
Sbjct: 92 LVRDVAGNLNFPILEKNG----------YEADDIIATFATKTAALGEHVVIISSDKDLLQ 141
Query: 150 SN----------RGSHFNLK--TNAFFNVSQKEAHFFAYYQCVVGDKGDNIKGVKGIGGF 197
+G + F S K A ++GD+ DNI GV IG
Sbjct: 142 LMTEHIKIYDPLKGKYITEDDVVKKFGTTSDKLREVMA----LIGDRSDNIPGVPSIGPK 197
Query: 198 NYKDFLNEDAKEHELWEQIIQAFKIKEDLSDSEAKEKALLNMRLVNM 244
+ + ++ + Q IK+ + ++E AL++ +L+ +
Sbjct: 198 TASSLITQFGSVENIFNSLDQVSSIKQRETLQNSREAALISWQLIGL 244
>sp|P56105|DPO1_HELPY DNA polymerase I (POL I)
Length = 891
Score = 51.6 bits (122), Expect = 9e-06
Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 19/165 (11%)
Query: 61 LFFITRGRESFRYQLCDHYKQKRHQFDEDFKALLRTLKIAIVEKYPLKKG---AKIQGEH 117
+F + ++ R + YKQ R ++ L+I I ++ K G ++ G
Sbjct: 65 VFALESQTKTKRAEKLGEYKQNRKDAPKEM-----LLQIPIALEWLQKMGFVCVEVNG-- 117
Query: 118 CFEYEADDIISFYKKKDPNNYVIASMDKDI--LYSNRGSHFNLKTNAFFNVSQKEAHF-- 173
+EADD+I+ P I S DKD L S++ + F+ KT ++
Sbjct: 118 ---FEADDVIASLATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTEFLAKDCVEKYGILP 174
Query: 174 --FAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNEDAKEHELWEQI 216
F YQ +VGD DN KGVKGIG N K+ L +++E +
Sbjct: 175 SQFTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENL 219
>ref|NP_224081.1| (NC_000921) DNA POLYMERASE I [Helicobacter pylori J99]
sp|Q9ZJE9|DPO1_HELPJ DNA polymerase I (POL I)
pir||F71816 DNA polymerase I - Helicobacter pylori (strain J99)
gb|AAD06938.1| (AE001559) DNA POLYMERASE I [Helicobacter pylori J99]
Length = 897
Score = 51.6 bits (122), Expect = 9e-06
Identities = 48/165 (29%), Positives = 73/165 (44%), Gaps = 19/165 (11%)
Query: 61 LFFITRGRESFRYQLCDHYKQKRHQFDEDFKALLRTLKIAIVEKYPLKKGAKIQGEHCFE 120
+F + ++ R + YKQ R ++ L+I I ++ K G C E
Sbjct: 65 VFALESQTKTKRAEKLGEYKQNRKDAPKEM-----LLQIPIALEWLQKMGFT-----CVE 114
Query: 121 ---YEADDIISFYKKKDPNNYVIASMDKDI--LYSNRGSHFNLKTNAFFNVSQKEAHF-- 173
+EADD+I+ P I S DKD L S++ + F+ KT ++
Sbjct: 115 VGGFEADDVIASLATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTEFLAKDCVEKYGILP 174
Query: 174 --FAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNEDAKEHELWEQI 216
F YQ +VGD DN KGVKGIG N K+ L +++E +
Sbjct: 175 SQFTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENL 219
>ref|NP_208261.1| (NC_000915) DNA polymerase I (polA) [Helicobacter pylori 26695]
pir||F64703 DNA polymerase I - Helicobacter pylori (strain 26695)
gb|AAD08510.1| (AE000647) DNA polymerase I (polA) [Helicobacter pylori 26695]
Length = 892
Score = 51.6 bits (122), Expect = 9e-06
Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 19/165 (11%)
Query: 61 LFFITRGRESFRYQLCDHYKQKRHQFDEDFKALLRTLKIAIVEKYPLKKG---AKIQGEH 117
+F + ++ R + YKQ R ++ L+I I ++ K G ++ G
Sbjct: 66 VFALESQTKTKRAEKLGEYKQNRKDAPKEM-----LLQIPIALEWLQKMGFVCVEVNG-- 118
Query: 118 CFEYEADDIISFYKKKDPNNYVIASMDKDI--LYSNRGSHFNLKTNAFFNVSQKEAHF-- 173
+EADD+I+ P I S DKD L S++ + F+ KT ++
Sbjct: 119 ---FEADDVIASLATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTEFLAKDCVEKYGILP 175
Query: 174 --FAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNEDAKEHELWEQI 216
F YQ +VGD DN KGVKGIG N K+ L +++E +
Sbjct: 176 SQFTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENL 220
>ref|NP_221127.1| (NC_000963) DNA POLYMERASE I (polA) [Rickettsia prowazekii]
sp|O05949|DPO1_RICPR DNA polymerase I (POL I)
pir||C71638 DNA polymerase I (polA) RP776 - Rickettsia prowazekii
emb|CAA72476.1| (Y11784) DNA polymerase I [Rickettsia prowazekii]
emb|CAA15203.1| (AJ235273) DNA POLYMERASE I (polA) [Rickettsia prowazekii]
emb|CAB56085.1| (AJ238755) DNA polymerase I [Rickettsia prowazekii]
emb|CAB56089.1| (AJ238756) DNA polymerase I [Rickettsia prowazekii]
Length = 867
Score = 51.2 bits (121), Expect = 1e-05
Identities = 54/231 (23%), Positives = 93/231 (39%), Gaps = 41/231 (17%)
Query: 37 QEVGVIF-LTTQILSIMHKTRCSKTLFFITRGRESFRYQLCDHYKQKRHQFDEDFKALL- 94
+ VG ++ T+ +L ++ + G ++FR+++ +YK R +D A L
Sbjct: 32 EPVGALYGFTSMLLKLLSDFKPQYVAIVFDSGGKNFRHKIYQNYKANRPLPPKDLIAQLP 91
Query: 95 ------RTLKIAIVEKYPLKKGAKIQGEHCFEYEADDIISFYKKKDPN---NYVIASMDK 145
K AI+EK YEADDII+ + K + +I S DK
Sbjct: 92 LVRDVASNFKFAILEKNG--------------YEADDIIATFATKTVSLGEEVIIISSDK 137
Query: 146 DIL---------YSNRGSHFNLKTNA---FFNVSQKEAHFFAYYQCVVGDKGDNIKGVKG 193
D+L Y + + N F K A ++GD+ DNI GV
Sbjct: 138 DLLQLMSKNIKIYDPIKCKYITEDNVVTKFGTTPDKLREVMA----LIGDRSDNIPGVPS 193
Query: 194 IGGFNYKDFLNEDAKEHELWEQIIQAFKIKEDLSDSEAKEKALLNMRLVNM 244
IG + + ++ + Q IK+ + A+E AL++ +L+ +
Sbjct: 194 IGPKTASSLITKFGSVENIFNSLDQISSIKQRKTLQNAREAALISWKLIGL 244
>ref|NP_220007.1| (NC_000117) DNA Polymerase I [Chlamydia trachomatis]
pir||C71509 probable DNA polymerase I - Chlamydia trachomatis (serotype D,
strain UW3/Cx)
gb|AAC68093.1| (AE001322) DNA Polymerase I [Chlamydia trachomatis]
Length = 866
Score = 50.4 bits (119), Expect = 2e-05
Identities = 56/182 (30%), Positives = 80/182 (43%), Gaps = 18/182 (9%)
Query: 80 KQKRHQFDEDFKALLRTLKIAIVEKYPL-KKGAKIQGEHCFE---YEADDIISFYKKK-- 133
KQ R + D+K+ + E+ L K+ ++ G C E EADD+I+ KK
Sbjct: 63 KQSRQELYADYKSNRDRQLGDLPEQIRLVKQYCELLGISCLEEKGVEADDVIASITKKAV 122
Query: 134 -DPNNYVIASMDKDILY--SNRGSHFNLKTNAFFNVSQKEAHF------FAYYQCVVGDK 184
D I + DKD+L S+R S FN ++ + F A Y +VGD
Sbjct: 123 ADGFEVCICTADKDLLQLVSSRVSVFNPWKEQEIQYNEVLSQFGVPPEQIADYLALVGDS 182
Query: 185 GDNIKGVKGIGGFNYKDFLNEDAKEHELWEQIIQ-AFKIKEDLSDSEAKEKALLNMRLVN 243
DNI GV G G + L E EL + + K K+ + D KE LL+ RL
Sbjct: 183 SDNIPGVSGCGPKKAQALLKEFQSVEELVANTERLSGKTKQMIEDQ--KETLLLSKRLAT 240
Query: 244 MH 245
+H
Sbjct: 241 LH 242
>sp|Q9RAA9|DPO1_RICFE DNA polymerase I (POL I)
emb|CAB56067.1| (AJ238763) DNA polymerase I [Rickettsia felis]
Length = 922
Score = 50.4 bits (119), Expect = 2e-05
Identities = 53/227 (23%), Positives = 93/227 (40%), Gaps = 33/227 (14%)
Query: 37 QEVGVIF-LTTQILSIMHKTRCSKTLFFITRGRESFRYQLCDHYKQKRHQFDEDFKALLR 95
+ VG ++ + +L ++ + G ++FR+ + YK R ED L
Sbjct: 32 EPVGALYGFASMLLKLLSDFKPKHVAVVFDSGGKNFRHHIYPEYKANRPPPPEDLVVQLP 91
Query: 96 TLK-IAIVEKYPL--KKGAKIQGEHCFEYEADDIISFYKKKDP---NNYVIASMDKDILY 149
++ +A +P+ K G YEADDII+ + K + V+ S DKD+L
Sbjct: 92 LVRDVASNLNFPILEKNG----------YEADDIIATFAAKTAALGEDVVVISSDKDLLQ 141
Query: 150 ---SNRGSHFNLK---------TNAFFNVSQKEAHFFAYYQCVVGDKGDNIKGVKGIGGF 197
N + LK F S K A ++GD+ DNI GV IG
Sbjct: 142 LMGENIKIYDPLKGKYITEDDVVKKFGTTSDKLREVMA----LIGDRSDNIPGVPSIGPK 197
Query: 198 NYKDFLNEDAKEHELWEQIIQAFKIKEDLSDSEAKEKALLNMRLVNM 244
+ + ++ + Q +K+ + +KE AL++ +L+ +
Sbjct: 198 TASSLITQFGSVENIFNSLEQVSSLKQRETLQNSKEAALISWQLIGL 244
>ref|NP_281529.1| (NC_002163) DNA polymerase I [Campylobacter jejuni]
pir||F81453 DNA-directed DNA polymerase (EC 2.7.7.7) I Cj0338c [imported] -
Campylobacter jejuni (strain NCTC 11168)
emb|CAB72805.1| (AL139074) DNA polymerase I [Campylobacter jejuni]
Length = 879
Score = 48.9 bits (115), Expect = 6e-05
Identities = 53/210 (25%), Positives = 89/210 (42%), Gaps = 19/210 (9%)
Query: 48 ILSIMHKTRCSKTLFFITRGRESFRYQLCDHYKQKRHQFDEDFKALLRTLKIAIVEKYPL 107
I S+ ++ + +F + ++FR ++ +YKQ R + LL + I I K
Sbjct: 41 IYSLKNEYKSDYIVFALDSKGKTFRSEIDPNYKQNRTPPPPE---LLEQIPICI--KMIE 95
Query: 108 KKGAKIQGEHCFEYEADDIISFYKKKDPNNYV---IASMDKDILYSNRGSHFNLKTNAFF 164
K G + YEADDII+ + K N + I + DKD+ + ++ +
Sbjct: 96 KMGFISVSQE--GYEADDIIASFVKTCENRDIFVRIITQDKDLYQLIKDGKTSIYSPISK 153
Query: 165 NVSQKEAHFFAY---------YQCVVGDKGDNIKGVKGIGGFNYKDFLNEDAKEHELWEQ 215
N + A Y + + GD DNI GVKGIG K L+E ++E
Sbjct: 154 NDYDEAACLEKYGVKPNQIRDFLALCGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYEN 213
Query: 216 IIQAFKIKEDLSDSEAKEKALLNMRLVNMH 245
+ + E KE A L+ +L +++
Sbjct: 214 LTLVRNERSRNLLLEGKENAFLSKKLASLY 243
>ref|NP_268299.1| (NC_002662) DNA polymerase I (EC 2.7.7.7) [Lactococcus lactis
subsp. lactis]
sp|Q9CDS1|DPO1_LACLA DNA polymerase I (POL I)
gb|AAK06240.1|AE006442_7 (AE006442) DNA polymerase I (EC 2.7.7.7) [Lactococcus lactis subsp.
lactis]
Length = 877
Score = 48.1 bits (113), Expect = 1e-04
Identities = 61/236 (25%), Positives = 99/236 (41%), Gaps = 29/236 (12%)
Query: 30 RFAAYSLQEVGVIF-LTTQILSIMHKTRCSKTLFFITRGRESFRYQLCDHYKQKRHQFDE 88
RF A + IF T + S+M + + L G+ +FR ++ YK R + +
Sbjct: 29 RFKAPNGLHTNAIFAFHTMLSSLMERIEPTHVLIAFDAGKTTFRTEMFADYKGGRSKTPD 88
Query: 89 DFKALLRTLKIAIVEKYPLKKGAKIQGEHCFEYEADDIISFYKK--KDPN---NYVIASM 143
+F+ L +K ++EK I+ YEADDII K + PN + I +
Sbjct: 89 EFREQLPFIK-EMIEK------LGIRHYELANYEADDIIGTLDKMAEAPNVNFDVTIVTG 141
Query: 144 DKDILY---SNRGSHFNLKTNAFFNVSQKEAHF---------FAYYQCVVGDKGDNIKGV 191
DKD++ N + K A F + F + ++GD DN GV
Sbjct: 142 DKDMIQLVDGNTRVEISKKGVAEFEEFTPDYLLEKMGLTPAQFIDLKALMGDSSDNYPGV 201
Query: 192 KGIGGFNYKDFLNEDAKEHELWEQI--IQAFKIKEDLSDSEAKEKALLNMRLVNMH 245
+G L E L+E + ++A K+KE+L KE A L+ +L ++
Sbjct: 202 TKVGEKTGLKLLQEFGSLENLYENVDSLKASKMKENLIAD--KEMAFLSQQLATIN 255
>ref|NP_297153.1| (NC_002620) DNA polymerase I [Chlamydia muridarum]
pir||D81665 DNA polymerase I TC0780 [imported] - Chlamydia muridarum (strain
Nigg)
gb|AAF39583.1| (AE002346) DNA polymerase I [Chlamydia muridarum]
Length = 866
Score = 47.8 bits (112), Expect = 1e-04
Identities = 56/188 (29%), Positives = 78/188 (40%), Gaps = 25/188 (13%)
Query: 72 RYQLCDHYKQKRHQFDEDFKALLRTLKIAIVEKYPLKKGAKIQGEHCFE---YEADDIIS 128
R +L YK R + ED +IA+V++Y ++ G C E EADD+I+
Sbjct: 66 RQELYADYKSNRDRKFEDLPE-----QIALVKQY-----CELIGIPCLEKEGVEADDVIA 115
Query: 129 FYKKK---DPNNYVIASMDKDILY--SNRGSHFN------LKTNAFFNVSQKEAHFFAYY 177
KK + I + DKD+L +++ S FN +K N A Y
Sbjct: 116 SVAKKAVAEGFEVCICTADKDLLQLVNSQVSVFNPWKEQEIKYNEVLLQFGVAPDQIADY 175
Query: 178 QCVVGDKGDNIKGVKGIGGFNYKDFLNEDAKEHELWEQIIQAFKIKEDLSDSEAKEKALL 237
+VGD DNI GV G G + FL E +L Q K E E LL
Sbjct: 176 LALVGDSSDNIPGVVGCGPKKAQAFLKEFQSVEDLVAN-TQRLSSKNKQMIEEQIETLLL 234
Query: 238 NMRLVNMH 245
+ RL +H
Sbjct: 235 SKRLATLH 242
>ref|NP_470936.1| (NC_003212) DNA polymerase I [Listeria innocua]
emb|CAC96831.1| (AL596169) DNA polymerase I [Listeria innocua]
Length = 875
Score = 47.4 bits (111), Expect = 2e-04
Identities = 52/215 (24%), Positives = 84/215 (38%), Gaps = 40/215 (18%)
Query: 48 ILSIMHKTRCSKTLFFITRGRESFRYQLCDHYKQKRH----QFDEDFKALLRTLKIAIVE 103
+++++ K + S L G+ +FR+ YK R + E F + L +
Sbjct: 41 LMNVLEKEKPSHVLVAFDAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIP 100
Query: 104 KYPLKKGAKIQGEHCFEYEADDIISFYKKK---DPNNYVIASMDKDI---------LYSN 151
+Y L YEADDII KK D I + D+D+ +Y
Sbjct: 101 QYELAN-----------YEADDIIGTLTKKAEADGMEVAIITGDRDLTQLASRKTTVYIT 149
Query: 152 RGSHFNLKTNAFFNVSQKEAHFFAYYQCV-----VGDKGDNIKGVKGIGGFNYKDFLNED 206
+ +++TN + KE + Q + +GD DNI G+ G+G L
Sbjct: 150 KKGIADMETNT--PETLKEKYDLTPSQIIDMKGLMGDSSDNIPGIPGVGEKTALKLL--- 204
Query: 207 AKEHELWEQIIQAFKIKEDLSDSEAKEKALLNMRL 241
HE + + E++S + KEK L N L
Sbjct: 205 ---HEFGGTVESVLEHAEEISGKKLKEKVLENKEL 236
>ref|NP_465090.1| (NC_003210) DNA polymerase I [Listeria monocytogenes EGD-e]
emb|CAC99643.1| (AL591979) DNA polymerase I [Listeria monocytogenes]
Length = 875
Score = 47.4 bits (111), Expect = 2e-04
Identities = 50/213 (23%), Positives = 83/213 (38%), Gaps = 36/213 (16%)
Query: 48 ILSIMHKTRCSKTLFFITRGRESFRYQLCDHYKQKRH----QFDEDFKALLRTLKIAIVE 103
+++++ K + S L G+ +FR+ YK R + E F + L +
Sbjct: 41 LMNVLEKEKPSHVLVAFDAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIP 100
Query: 104 KYPLKKGAKIQGEHCFEYEADDIISFYKKK---DPNNYVIASMDKDI---------LYSN 151
+Y L YEADDII KK D I + D+D+ +Y
Sbjct: 101 QYELAN-----------YEADDIIGTLTKKAEADGMEVAIITGDRDLTQLASEKTTVYIT 149
Query: 152 RGSHFNLKTNAFFNVSQK---EAHFFAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNEDAK 208
+ +++TN + +K + ++GD DNI G+ G+G L
Sbjct: 150 KKGIADMETNTPETLKEKYNLTPEQIIDMKGLMGDSSDNIPGIPGVGEKTALKLL----- 204
Query: 209 EHELWEQIIQAFKIKEDLSDSEAKEKALLNMRL 241
HE + + E++S + KEK L N L
Sbjct: 205 -HEFGGTVESVLEHAEEISGKKLKEKVLENKEL 236
>gb|AAC98908.1| (AF028719) DNA polymerase type I [Rhodothermus sp. 'ITI 518']
Length = 924
Score = 47.0 bits (110), Expect = 2e-04
Identities = 57/226 (25%), Positives = 91/226 (40%), Gaps = 42/226 (18%)
Query: 45 TTQILSIMHKTRCSKTLFFITRGRE--SFRYQLCDHYKQKRHQFDEDF-------KALLR 95
TT +L ++ + G E +FR + + YK R ED K ++R
Sbjct: 40 TTSLLKLIEEHGMDYMAVVFDAGGEEGTFREAIYEEYKAHREPPPEDLLANLPWIKEIVR 99
Query: 96 TLKIAIVEKYPLKKGAKIQGEHCFEYEADDIISFYKKKDPNN---YVIASMDKDILY--- 149
L I ++E+ + EADD+I ++ + VI S DKD L
Sbjct: 100 ALDIPVIEEPGV--------------EADDVIGTLARRAEAHGIDVVIVSPDKDFLQLLS 145
Query: 150 --------SNRGSHFNLKT-NAFFNVSQKEAHFFAYYQCVVGDKGDNIKGVKGIGGFNYK 200
+ RG F+L T F E H F ++GD DN+ GV GIG
Sbjct: 146 PRISIYKPARRGETFDLITIETFRETYGLEPHQFIDVLALMGDPSDNVPGVPGIGEKTAV 205
Query: 201 DFLNEDAKEHEL--WEQIIQAFKIKEDLSDSEAKEKALLNMRLVNM 244
+ + L + ++ + +E L + +E+ALL+ RLV +
Sbjct: 206 QLIQQYGSVENLLAHAEEVKGKRAREGLLNH--REEALLSKRLVTI 249
>gb|AAD28505.1|AF121780_1 (AF121780) DNA polymerase I [Rhodothermus marinus]
Length = 924
Score = 47.0 bits (110), Expect = 2e-04
Identities = 57/226 (25%), Positives = 91/226 (40%), Gaps = 42/226 (18%)
Query: 45 TTQILSIMHKTRCSKTLFFITRGRE--SFRYQLCDHYKQKRHQFDEDF-------KALLR 95
TT +L ++ + G E +FR + + YK R ED K ++R
Sbjct: 40 TTSLLKLIEEHGMDYMAVVFDAGGEEGTFREAIYEEYKAHREPPPEDLLANLPWIKEIVR 99
Query: 96 TLKIAIVEKYPLKKGAKIQGEHCFEYEADDIISFYKKKDPNN---YVIASMDKDILY--- 149
L I ++E+ + EADD+I ++ + VI S DKD L
Sbjct: 100 ALDIPVIEEPGV--------------EADDVIGTLARRAEAHGIDVVIVSPDKDFLQLLS 145
Query: 150 --------SNRGSHFNLKT-NAFFNVSQKEAHFFAYYQCVVGDKGDNIKGVKGIGGFNYK 200
+ RG F+L T F E H F ++GD DN+ GV GIG
Sbjct: 146 PHVSIYKPARRGETFDLITIETFRETYGLEPHQFIDVLALMGDPSDNVPGVPGIGEKTAV 205
Query: 201 DFLNEDAKEHEL--WEQIIQAFKIKEDLSDSEAKEKALLNMRLVNM 244
+ + L + ++ + +E L + +E+ALL+ RLV +
Sbjct: 206 QLIQQYGSVENLLAHAEEVKGKRAREGLLNH--REEALLSKRLVTI 249
>ref|NP_606485.1| (NC_003485) DNA-directed DNA polymerase I [Streptococcus pyogenes
MGAS8232]
gb|AAL96984.1| (AE009968) DNA-directed DNA polymerase I [Streptococcus pyogenes
MGAS8232]
Length = 880
Score = 47.0 bits (110), Expect = 2e-04
Identities = 59/218 (27%), Positives = 93/218 (42%), Gaps = 36/218 (16%)
Query: 51 IMHKTRCSKTLFFITRGRESFRYQLCDHYKQKR----HQFDEDFKALLRTLKIAIVEKYP 106
+M + R + L G+ +FR ++ YK R +F E F + L + Y
Sbjct: 51 MMKRVRPTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPYIREMLTALGIAYYE 110
Query: 107 LKKGAKIQGEHCFEYEADDIISFYKK-----KDPNNYVIASMDKDILY----------SN 151
L EH YEADDII K + P + I S DKD++ S
Sbjct: 111 L--------EH---YEADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISK 159
Query: 152 RG-SHFNLKTNAFFNVSQK-EAHFFAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNEDAKE 209
+G + F T A+ + F + ++GDK DNI GV IG L+E
Sbjct: 160 KGVAEFEEFTPAYLMEKMGLTPNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEFGSL 219
Query: 210 HELWEQI--IQAFKIKEDLSDSEAKEKALLNMRLVNMH 245
++E I +A K+KE+L + +++A L+ L ++
Sbjct: 220 EGIYEHIDGFKASKMKENLIND--RDQAFLSKTLATIN 255
>ref|NP_658615.1| (NC_003995) DNA_pol_A, DNA polymerase family A [Bacillus anthracis
A2012] [Bacillus anthracis str. A2012]
Length = 877
Score = 46.6 bits (109), Expect = 3e-04
Identities = 54/221 (24%), Positives = 93/221 (41%), Gaps = 34/221 (15%)
Query: 45 TTQILSIMHKTRCSKTLFFITRGRESFRYQLCDHYKQKRH----QFDEDFKALLRTLKIA 100
T ++ I+ + + + L G+ +FR++ YK R + E F + L
Sbjct: 39 TMMLMRILEEEKPTHMLVAFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAF 98
Query: 101 IVEKYPLKKGAKIQGEHCFEYEADDIISFYKKKDPN---NYVIASMDKDILYS-NRGSHF 156
V +Y L+ YEADDI+ K+ + + S DKD+L + +
Sbjct: 99 NVPRYELEN-----------YEADDIMGTLAKEASEQGASVKVISGDKDLLQLVSDNTLV 147
Query: 157 NLKTNAFFNVSQ--KEAHFFAY---------YQCVVGDKGDNIKGVKGIGGFNYKDFLNE 205
+ V + KEA F Y + ++GD+ DNI GV G+G L +
Sbjct: 148 CIPRKGITEVDEYTKEALFEKYSLSPKQIIDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQ 207
Query: 206 DAKEHELWEQI--IQAFKIKEDLSDSEAKEKALLNMRLVNM 244
E++E I + K+KE L + K++AL++ L +
Sbjct: 208 FGTVEEVYENIDQVSGKKLKEKLEAN--KDQALMSKDLATI 246
>sp|O32801|DPO1_LACLC DNA POLYMERASE I (POL I)
gb|AAB64184.1| (U78771) DNA polymerase I (PolI) [Lactococcus lactis]
Length = 877
Score = 46.2 bits (108), Expect = 4e-04
Identities = 60/236 (25%), Positives = 99/236 (41%), Gaps = 29/236 (12%)
Query: 30 RFAAYSLQEVGVIF-LTTQILSIMHKTRCSKTLFFITRGRESFRYQLCDHYKQKRHQFDE 88
RF A + IF T + S+M + + + L G+ +FR ++ YK R + +
Sbjct: 29 RFKAPNGLHTNAIFAFHTMLSSLMERIQPTHVLIAFDAGKTTFRTEMFADYKGGRSKTPD 88
Query: 89 DFKALLRTLKIAIVEKYPLKKGAKIQGEHCFEYEADDIISFYKK----KDPN-NYVIASM 143
+F+ L +K ++EK I+ YEADDII K D N + I +
Sbjct: 89 EFREQLPFIK-EMIEK------LGIRHYELANYEADDIIGTLDKMAEAPDVNFDVTIVTG 141
Query: 144 DKDILY---SNRGSHFNLKTNAFFNVSQKE---------AHFFAYYQCVVGDKGDNIKGV 191
DKD++ N + K A F + F + ++GD DN GV
Sbjct: 142 DKDMIQLVDGNTRVEISKKGVAEFEEFTPDYLLEKMGLTPSQFIDLKALMGDSSDNYPGV 201
Query: 192 KGIGGFNYKDFLNEDAKEHELWEQI--IQAFKIKEDLSDSEAKEKALLNMRLVNMH 245
+G L E L+E + ++A K+K++L KE A L+ +L ++
Sbjct: 202 TKVGEKTGLKLLQEFGSLENLYENVETLKASKMKDNLIAD--KEMAFLSQQLATIN 255
>ref|NP_243046.1| (NC_002570) 5'-3' exonuclease [Bacillus halodurans]
sp|Q9KAV6|EX53_BACHD Probable 5'-3' exonuclease
dbj|BAB05899.1| (AP001514) 5'-3' exonuclease [Bacillus halodurans]
Length = 303
Score = 45.8 bits (107), Expect = 5e-04
Identities = 51/208 (24%), Positives = 86/208 (40%), Gaps = 30/208 (14%)
Query: 27 LPKRFAAYSLQEVGVIFLTTQILSIMHKTRCSKTLFFITRGRESFRYQLCDHYKQKRHQF 86
LP+ A Y + + V F L H + + R +S R Q YK R +
Sbjct: 31 LPRNEAGYYINALRVFFPKLFQLIREHNVTHVAVAWDVKR-EDSHRRQAFAFYKASRGEL 89
Query: 87 DEDF-------KALLRTLKIAIVEKYPLK----------KGAKIQGEHCFEYEAD-DIIS 128
E +LL + +A V P + + AK + HCF Y D D++
Sbjct: 90 PEALIEQYETATSLLEEIGVAQVTIPPYEADDTIGAFACRWAKEEKGHCFIYSNDRDLLQ 149
Query: 129 FYKKKDPNNYVIASMDKDILYSNRGSHFNLKTNAFFNVSQKEAHFFAYYQCVVGDKGDNI 188
K + +I+S KD++Y+ N + + +N+S + + + ++GDK DNI
Sbjct: 150 LLSKS--TSQIISSKGKDLIYTEE----NFRND--YNISPAQ---WVDVKALLGDKSDNI 198
Query: 189 KGVKGIGGFNYKDFLNEDAKEHELWEQI 216
G G+G + + + L+EQI
Sbjct: 199 PGCPGVGEKSALPLIQQYGTIETLYEQI 226
>sp|Q59156|DPO1_ANATH DNA polymerase I (POL I)
emb|CAA67184.1| (X98575) DNA-directed DNA polymerase; DNA-dependent DNA polymerase
[Anaerocellum thermophilum]
Length = 850
Score = 45.4 bits (106), Expect = 7e-04
Identities = 49/209 (23%), Positives = 87/209 (41%), Gaps = 46/209 (22%)
Query: 63 FITRGRESFRYQLCDHYKQKRHQFDEDFKA-------LLRTLKIAIVEKYPLKKGAKIQG 115
F RGRE+ + + + YK R ++ + +L I I+E
Sbjct: 56 FDKRGREARKSEY-EEYKANRKPMPDNLQVQIPYVREILYAFNIPIIE------------ 102
Query: 116 EHCFE-YEADDIISFYKKKDPNNYV-----------IASMDKDILYSNRGSHFNLKTNAF 163
FE YEADD+I + N + + +DK+++ + F+
Sbjct: 103 ---FEGYEADDVIGSLVNQFKNTGLDIVIITGDRDTLQLLDKNVVVKIVSTKFDKTVEDL 159
Query: 164 FNVSQKEAHFFAY------YQCVVGDKGDNIKGVKGIGGFNYKDFLNEDAKEHELWEQII 217
+ V + + + Y+ +VGD+ DNI GVKGIG + + L E + E+++ +
Sbjct: 160 YTVENVKEKYGVWANQVPDYKALVGDQSDNIPGVKGIGEKSAQKLLEEYSSLEEIYQNL- 218
Query: 218 QAFKIKEDLSD--SEAKEKALLNMRLVNM 244
KIK + + K+ A L+ RL +
Sbjct: 219 --DKIKSSIREKLEAGKDMAFLSKRLATI 245
>ref|NP_268564.1| (NC_002737) DNA-directed DNA polymerase I [Streptococcus pyogenes]
[Streptococcus pyogenes M1 GAS]
gb|AAK33285.1| (AE006487) DNA-directed DNA polymerase I [Streptococcus pyogenes M1
GAS]
Length = 880
Score = 44.3 bits (103), Expect = 0.001
Identities = 58/221 (26%), Positives = 94/221 (42%), Gaps = 42/221 (19%)
Query: 51 IMHKTRCSKTLFFITRGRESFRYQLCDHYKQKRHQFDEDFKA-------LLRTLKIAIVE 103
+M + + + L G+ +FR ++ YK R + E+F+ +L L IA E
Sbjct: 51 MMKRVQPTHVLVAFDAGKTTFRTEMYADYKAGRAKTPEEFREQFPYIREMLTALGIAYYE 110
Query: 104 KYPLKKGAKIQGEHCFEYEADDIISFYKK-----KDPNNYVIASMDKDILY--------- 149
EH YEADDII K + P + I S DKD++
Sbjct: 111 L-----------EH---YEADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVE 156
Query: 150 -SNRG-SHFNLKTNAFFNVSQK-EAHFFAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNED 206
S +G + F T A+ + F + ++GDK DNI GV IG L+E
Sbjct: 157 ISKKGVAEFEEFTPAYLMEKMGLTPNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEF 216
Query: 207 AKEHELWEQI--IQAFKIKEDLSDSEAKEKALLNMRLVNMH 245
++E I + K+KE+L + +++A L+ L ++
Sbjct: 217 GSLEGIYEHIDGFKTSKMKENLIND--RDQAFLSKTLATIN 255
>sp|P06229|EXO5_BPT5 Exodeoxyribonuclease (5'exonuclease)
pir||NCBPT5 phosphodiesterase I (EC 3.1.4.1) - phage T5
emb|CAA27136.1| (X03402) 5' exonuclease (aa 1-291) [Bacteriophage T5]
emb|CAA04588.1| (AJ001191) 5'-exonuclease (D15 protein) [Bacteriophage T5]
prf||1203256A exonuclease,5' [Bacteriophage T5]
Length = 291
Score = 43.9 bits (102), Expect = 0.002
Identities = 51/217 (23%), Positives = 92/217 (41%), Gaps = 25/217 (11%)
Query: 48 ILSIMHKTRCSKTLFFITRGRESFRYQLCDHYK----QKRHQFDEDFKALLRTLKIAIVE 103
I S+ T+ +G+ FR + YK +K Q E+ KAL + +
Sbjct: 51 IQSLAKSYSARTTIVLGDKGKSVFRLEHLPEYKGNRDEKYAQRTEEEKALDEQFFEYLKD 110
Query: 104 KYPLKKGA----KIQGEHCFEYEADDIISFYKKKDPNNY-----VIASMDKDILYSNRGS 154
+ L K I+G EADD+ ++ K + Y + D D L +++ S
Sbjct: 111 AFELCKTTFPTFTIRG-----VEADDMAAYIVKLIGHLYDHVWLISTDGDWDTLLTDKVS 165
Query: 155 HFNLKTNAFFNVSQKEAHF-------FAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNEDA 207
F+ T +++ H F + ++GD GDNI+GV+GIG + + E
Sbjct: 166 RFSFTTRREYHLRDMYEHHNVDDVEQFISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFG 225
Query: 208 KEHELWEQIIQAFKIKEDLSDSEAKEKALLNMRLVNM 244
++ +Q+ K K + + ++E N+ LV++
Sbjct: 226 NVLDIIDQLPLPGKQKYIQNLNASEELLFRNLILVDL 262
>ref|NP_570332.1| (NC_003390) exonuclease [Cyanophage P60]
gb|AAL73270.1| (AF338467) exonuclease [Cyanophage P60]
Length = 243
Score = 43.5 bits (101), Expect = 0.003
Identities = 36/129 (27%), Positives = 59/129 (44%), Gaps = 10/129 (7%)
Query: 122 EADDIISFYKKKDP-NNYVIASMDKDILYSNRGSHFNLKTNAFFNVSQKEAHFFAYYQCV 180
EADD++ +N+V+ S DKD+ ++LK + + ++AH Y QC+
Sbjct: 111 EADDVMGILATNGSLDNFVLISPDKDMAQIPCRI-YDLKHE--YTQTPEKAHELLYLQCL 167
Query: 181 VGDKGDNIKGVKGIGGFNYKDFLNEDAKEHELWEQIIQAFKIKEDLSDSEAKEKALLNMR 240
GD D G GIG L + K+ W ++ + E+ EA A+ N+R
Sbjct: 168 TGDSTDGYSGCPGIGPKRALAILGK-VKDGNYWPSVVATY---EEAGLKEA--DAVRNLR 221
Query: 241 LVNMHQMTH 249
L N+ + H
Sbjct: 222 LANILKAEH 230
>pir||JX0359 DNA-directed DNA polymerase (EC 2.7.7.7) - Thermus aquaticus
Length = 831
Score = 43.1 bits (100), Expect = 0.003
Identities = 47/146 (32%), Positives = 70/146 (47%), Gaps = 17/146 (11%)
Query: 70 SFRYQLCDHYKQKRHQFDEDFKALLRTLKIAIVEKYPLKKGAKIQGEHCFEYEADDII-S 128
SFR++ YK R EDF L +K +V+ L + ++ G YEADD++ S
Sbjct: 72 SFRHEAYGGYKAGRAPTPEDFPRQLALIK-ELVDLLGLAR-LEVPG-----YEADDVLAS 124
Query: 129 FYKKKDPNNYV--IASMDKDI--LYSNRGSHFN----LKTNAF-FNVSQKEAHFFAYYQC 179
KK + Y I + DKD+ L S+R + L T A+ + +A Y+
Sbjct: 125 LAKKAEKEGYEVRILTADKDLYQLLSDRIHALHPEGYLITPAWLWEKYGLRPDQWADYRA 184
Query: 180 VVGDKGDNIKGVKGIGGFNYKDFLNE 205
+ GD+ DN+ GVKGIG + L E
Sbjct: 185 LTGDESDNLPGVKGIGEKTARKLLEE 210
>dbj|BAA06775.1| (D32013) DNA Polymerase [Thermus aquaticus]
Length = 832
Score = 43.1 bits (100), Expect = 0.003
Identities = 47/146 (32%), Positives = 70/146 (47%), Gaps = 17/146 (11%)
Query: 70 SFRYQLCDHYKQKRHQFDEDFKALLRTLKIAIVEKYPLKKGAKIQGEHCFEYEADDII-S 128
SFR++ YK R EDF L +K +V+ L + ++ G YEADD++ S
Sbjct: 72 SFRHEAYGGYKAGRAPTPEDFPRQLALIK-ELVDLLGLAR-LEVPG-----YEADDVLAS 124
Query: 129 FYKKKDPNNYV--IASMDKDI--LYSNRGSHFN----LKTNAF-FNVSQKEAHFFAYYQC 179
KK + Y I + DKD+ L S+R + L T A+ + +A Y+
Sbjct: 125 LAKKAEKEGYEVRILTADKDLYQLLSDRIHALHPEGYLITPAWLWEKYGLRPDQWADYRA 184
Query: 180 VVGDKGDNIKGVKGIGGFNYKDFLNE 205
+ GD+ DN+ GVKGIG + L E
Sbjct: 185 LTGDESDNLPGVKGIGEKTARKLLEE 210
>pir||A32949 DNA-directed DNA polymerase (EC 2.7.7.7) - Streptococcus pneumoniae
gb|AAA26954.1| (J04479) DNA polymerase I [Streptococcus pneumoniae]
Length = 877
Score = 43.1 bits (100), Expect = 0.003
Identities = 55/216 (25%), Positives = 92/216 (42%), Gaps = 36/216 (16%)
Query: 51 IMHKTRCSKTLFFITRGRESFRYQLCDHYKQKRHQFDEDFKALLRTLKIAIVEKYP---- 106
++ + S L G+ +FR ++ YK R + ++F+ E++P
Sbjct: 50 LLERVEPSHILVAFDAGKTTFRTEMYADYKGGRAKTPDEFR-----------EQFPFIRE 98
Query: 107 LKKGAKIQGEHCFEYEADDIISFYKK---KDPNNYVIASMDKDILY----------SNRG 153
L I+ +YEADDII K +D + I S DKD++ S +G
Sbjct: 99 LLDHMGIRHYELAQYEADDIIGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKG 158
Query: 154 -SHFNLKTNAFF--NVSQKEAHFFAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNEDAKEH 210
+ F T + + A F + ++GDK DNI GV +G L E
Sbjct: 159 VAEFEAFTPDYLMEEMGLTPAQFIDL-KALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLE 217
Query: 211 ELWEQI--IQAFKIKEDLSDSEAKEKALLNMRLVNM 244
++E I ++ K+KE+L + KE+A L+ L +
Sbjct: 218 GIYENIDGMKTSKMKENLIND--KEQAFLSKTLATI 251
>ref|NP_357626.1| (NC_003098) DNA polymerase I [Streptococcus pneumoniae R6]
gb|AAK98836.1| (AE008387) DNA polymerase I [Streptococcus pneumoniae R6]
Length = 877
Score = 43.1 bits (100), Expect = 0.003
Identities = 55/216 (25%), Positives = 92/216 (42%), Gaps = 36/216 (16%)
Query: 51 IMHKTRCSKTLFFITRGRESFRYQLCDHYKQKRHQFDEDFKALLRTLKIAIVEKYP---- 106
++ + S L G+ +FR ++ YK R + ++F+ E++P
Sbjct: 50 LLERVEPSHILVAFDAGKTTFRTEMYADYKGGRAKTPDEFR-----------EQFPFIRE 98
Query: 107 LKKGAKIQGEHCFEYEADDIISFYKK---KDPNNYVIASMDKDILY----------SNRG 153
L I+ +YEADDII K +D + I S DKD++ S +G
Sbjct: 99 LLDHMGIRHYELAQYEADDIIGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKG 158
Query: 154 -SHFNLKTNAFF--NVSQKEAHFFAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNEDAKEH 210
+ F T + + A F + ++GDK DNI GV +G L E
Sbjct: 159 VAEFEAFTPDYLMEEMGLTPAQFIDL-KALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLE 217
Query: 211 ELWEQI--IQAFKIKEDLSDSEAKEKALLNMRLVNM 244
++E I ++ K+KE+L + KE+A L+ L +
Sbjct: 218 GIYENIDGMKTSKMKENLIND--KEQAFLSKTLATI 251
>ref|NP_344582.1| (NC_003028) DNA polymerase I [Streptococcus pneumoniae TIGR4]
sp|P13252|DPO1_STRPN DNA polymerase I (POL I)
gb|AAK74222.1| (AE007320) DNA polymerase I [Streptococcus pneumoniae TIGR4]
Length = 877
Score = 43.1 bits (100), Expect = 0.003
Identities = 56/216 (25%), Positives = 89/216 (40%), Gaps = 36/216 (16%)
Query: 51 IMHKTRCSKTLFFITRGRESFRYQLCDHYKQKR----HQFDEDFKALLRTLKIAIVEKYP 106
++ + S L G+ +FR ++ YK R +F E F + L + Y
Sbjct: 50 LLERVEPSHILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYD 109
Query: 107 LKKGAKIQGEHCFEYEADDIISFYKK---KDPNNYVIASMDKDILY----------SNRG 153
L +YEADDII K +D + I S DKD++ S +G
Sbjct: 110 LA-----------QYEADDIIGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKG 158
Query: 154 -SHFNLKTNAFF--NVSQKEAHFFAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNEDAKEH 210
+ F T + + A F + ++GDK DNI GV +G L E
Sbjct: 159 VAEFEAFTPDYLMEEMGLTPAQFIDL-KALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLE 217
Query: 211 ELWEQI--IQAFKIKEDLSDSEAKEKALLNMRLVNM 244
++E I ++ K+KE+L + KE+A L+ L +
Sbjct: 218 GIYENIDGMKTSKMKENLIND--KEQAFLSKTLATI 251
>pdb|1TAQ| Structure Of Taq Dna Polymerase
Length = 832
Score = 42.7 bits (99), Expect = 0.004
Identities = 47/146 (32%), Positives = 70/146 (47%), Gaps = 17/146 (11%)
Query: 70 SFRYQLCDHYKQKRHQFDEDFKALLRTLKIAIVEKYPLKKGAKIQGEHCFEYEADDII-S 128
SFR++ YK R EDF L +K +V+ L + ++ G YEADD++ S
Sbjct: 72 SFRHEAYGGYKAGRAPTPEDFPRQLALIK-ELVDLLGLAR-LEVPG-----YEADDVLAS 124
Query: 129 FYKKKDPNNYV--IASMDKDI--LYSNRGSHFN----LKTNAF-FNVSQKEAHFFAYYQC 179
KK + Y I + DKD+ L S+R + L T A+ + +A Y+
Sbjct: 125 LAKKAEKEGYEVRILTADKDLYQLLSDRIHVLHPEGYLITPAWLWEKYGLRPDQWADYRA 184
Query: 180 VVGDKGDNIKGVKGIGGFNYKDFLNE 205
+ GD+ DN+ GVKGIG + L E
Sbjct: 185 LTGDESDNLPGVKGIGEKTARKLLEE 210
>pdb|1TAU|A Chain A, Structure Of Dna Polymerase
Length = 832
Score = 42.7 bits (99), Expect = 0.004
Identities = 47/146 (32%), Positives = 70/146 (47%), Gaps = 17/146 (11%)
Query: 70 SFRYQLCDHYKQKRHQFDEDFKALLRTLKIAIVEKYPLKKGAKIQGEHCFEYEADDII-S 128
SFR++ YK R EDF L +K +V+ L + ++ G YEADD++ S
Sbjct: 72 SFRHEAYGGYKAGRAPTPEDFPRQLALIK-ELVDLLGLAR-LEVPG-----YEADDVLAS 124
Query: 129 FYKKKDPNNYV--IASMDKDI--LYSNRGSHFN----LKTNAF-FNVSQKEAHFFAYYQC 179
KK + Y I + DKD+ L S+R + L T A+ + +A Y+
Sbjct: 125 LAKKAEKEGYEVRILTADKDLYQLLSDRIHVLHPEGYLITPAWLWEKYGLRPDQWADYRA 184
Query: 180 VVGDKGDNIKGVKGIGGFNYKDFLNE 205
+ GD+ DN+ GVKGIG + L E
Sbjct: 185 LTGDESDNLPGVKGIGEKTARKLLEE 210
>sp|P19821|DPO1_THEAQ DNA polymerase I, thermostable (Taq polymerase 1)
pir||A33530 DNA-directed DNA polymerase (EC 2.7.7.7) I - Thermus aquaticus
pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab
pdb|1CMW|A Chain A, Crystal Structure Of Taq Dna-Polymerase Shows A New
Orientation For The Structure-Specific Nuclease Domain
gb|AAA27507.1| (J04639) DNA polymerase [Thermus aquaticus]
Length = 832
Score = 42.7 bits (99), Expect = 0.004
Identities = 47/146 (32%), Positives = 70/146 (47%), Gaps = 17/146 (11%)
Query: 70 SFRYQLCDHYKQKRHQFDEDFKALLRTLKIAIVEKYPLKKGAKIQGEHCFEYEADDII-S 128
SFR++ YK R EDF L +K +V+ L + ++ G YEADD++ S
Sbjct: 72 SFRHEAYGGYKAGRAPTPEDFPRQLALIK-ELVDLLGLAR-LEVPG-----YEADDVLAS 124
Query: 129 FYKKKDPNNYV--IASMDKDI--LYSNRGSHFN----LKTNAF-FNVSQKEAHFFAYYQC 179
KK + Y I + DKD+ L S+R + L T A+ + +A Y+
Sbjct: 125 LAKKAEKEGYEVRILTADKDLYQLLSDRIHVLHPEGYLITPAWLWEKYGLRPDQWADYRA 184
Query: 180 VVGDKGDNIKGVKGIGGFNYKDFLNE 205
+ GD+ DN+ GVKGIG + L E
Sbjct: 185 LTGDESDNLPGVKGIGEKTARKLLEE 210
>gb|AAL47553.1| (AY065997) DNA polymerase [Thermoanaerobacter yonseiensis]
Length = 871
Score = 42.4 bits (98), Expect = 0.006
Identities = 55/238 (23%), Positives = 97/238 (40%), Gaps = 29/238 (12%)
Query: 27 LPKRFAAYSLQEVGVIFLTTQILSIMHKTRCSKTLFFITRGRESFRYQLCDHYKQKRHQF 86
LP + L + T ++ ++ + + + +FR++ YK R
Sbjct: 20 LPMLTTSEGLHTNALYGFTMMLIKLLEEEKPDYVAIAFDKKAPTFRHKEFKEYKATRQAM 79
Query: 87 DEDFKALLRTLKIAIVEKYPLKKGAKIQGEHCFEYEADDIISFYKKKDPNN---YVIASM 143
E+ + LK +++ + +K +++G YEADDII K VI +
Sbjct: 80 PEELSEQVELLK-EVIDGFNIKT-LELEG-----YEADDIIGTVSKMAEEKGMEVVIVTG 132
Query: 144 DKDILY----------SNRG----SHFNLKTNAFFNVSQKEAHFFAYYQCVVGDKGDNIK 189
D+D L S +G F+ K A + F + ++GDK DNI
Sbjct: 133 DRDALQLISPRVKVKISKKGITQMEEFDEK--AVLERYEITPQQFVDLKGLMGDKSDNIP 190
Query: 190 GVKGIGGFNYKDFLNEDAKEHELWEQIIQ-AFKIKEDLSDSEAKEKALLNMRLVNMHQ 246
G+ IG L E L E I + + KIKE + + +E A+++ RL +++
Sbjct: 191 GIPNIGEKTAIKLLKEFGSVENLLENISKLSGKIKETIEAN--RELAVMSKRLATINR 246
>pdb|1EXN|B Chain B, T5 5'-Exonuclease
pdb|1EXN|A Chain A, T5 5'-Exonuclease
Length = 290
Score = 42.4 bits (98), Expect = 0.006
Identities = 51/217 (23%), Positives = 90/217 (40%), Gaps = 25/217 (11%)
Query: 48 ILSIMHKTRCSKTLFFITRGRESFRYQLCDHYK----QKRHQFDEDFKALLRTLKIAIVE 103
I S+ T+ +G+ FR + YK +K Q E+ KAL + +
Sbjct: 50 IQSLAKSYSARTTIVLGDKGKSVFRLEHLPEYKGNRDEKYAQRTEEEKALDEQFFEYLKD 109
Query: 104 KYPLKKGA----KIQGEHCFEYEADDIISFYKKKDPNNY-----VIASMDKDILYSNRGS 154
+ L K I+G EADD ++ K + Y + D D L +++ S
Sbjct: 110 AFELCKTTFPTFTIRG-----VEADDXAAYIVKLIGHLYDHVWLISTDGDWDTLLTDKVS 164
Query: 155 HFNLKTNAFFNVSQKEAHF-------FAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNEDA 207
F+ T +++ H F + + GD GDNI+GV+GIG + + E
Sbjct: 165 RFSFTTRREYHLRDXYEHHNVDDVEQFISLKAIXGDLGDNIRGVEGIGAKRGYNIIREFG 224
Query: 208 KEHELWEQIIQAFKIKEDLSDSEAKEKALLNMRLVNM 244
++ +Q+ K K + + ++E N+ LV++
Sbjct: 225 NVLDIIDQLPLPGKQKYIQNLNASEELLFRNLILVDL 261
>ref|NP_622526.1| (NC_003869) DNA polymerase I - 3'-5' exonuclease and polymerase
domains [Thermoanaerobacter tengcongensis]
gb|AAM24130.1| (AE013054) DNA polymerase I - 3'-5' exonuclease and polymerase
domains [Thermoanaerobacter tengcongensis]
Length = 871
Score = 42.4 bits (98), Expect = 0.006
Identities = 55/238 (23%), Positives = 97/238 (40%), Gaps = 29/238 (12%)
Query: 27 LPKRFAAYSLQEVGVIFLTTQILSIMHKTRCSKTLFFITRGRESFRYQLCDHYKQKRHQF 86
LP + L + T ++ ++ + + + +FR++ YK R
Sbjct: 20 LPMLTTSEGLHTNALYGFTMMLIKLLEEEKPDYVAIAFDKKAPTFRHKEFKEYKATRQAM 79
Query: 87 DEDFKALLRTLKIAIVEKYPLKKGAKIQGEHCFEYEADDIISFYKKKDPNN---YVIASM 143
E+ + LK +++ + +K +++G YEADDII K VI +
Sbjct: 80 PEELSEQVELLK-EVIDGFNIKT-LELEG-----YEADDIIGTVSKMAEEKGMEVVIVTG 132
Query: 144 DKDILY----------SNRG----SHFNLKTNAFFNVSQKEAHFFAYYQCVVGDKGDNIK 189
D+D L S +G F+ K A + F + ++GDK DNI
Sbjct: 133 DRDALQLISPRVKVKISKKGITQMEEFDEK--AVLERYEITPQQFVDLKGLMGDKSDNIP 190
Query: 190 GVKGIGGFNYKDFLNEDAKEHELWEQIIQ-AFKIKEDLSDSEAKEKALLNMRLVNMHQ 246
G+ IG L E L E I + + KIKE + + +E A+++ RL +++
Sbjct: 191 GIPNIGEKTAIKLLKEFGSVENLLENISKLSGKIKETIEAN--RELAVMSKRLATINR 246
>ref|NP_110067.1| (NC_000912) 5'-3' exonuclease (complete) [Mycoplasma pneumoniae]
sp|P75403|EX53_MYCPN Probable 5'-3' exonuclease
pir||S73784 DNA polymerase I - Mycoplasma pneumoniae (strain ATCC 29342)
gb|AAB96106.1| (AE000045) 5'-3' exonuclease (complete) [Mycoplasma pneumoniae]
Length = 291
Score = 42.0 bits (97), Expect = 0.007
Identities = 43/155 (27%), Positives = 67/155 (42%), Gaps = 29/155 (18%)
Query: 70 SFRYQLCDHYKQKRHQFDEDFKALLRTLKIAIVEKYPLKKGAKIQGEHCFEYEADDIISF 129
+FR QL YK KR + + ++I +V++ G + + FE ADD+I
Sbjct: 67 TFRDQLYSEYKSKRSKTPSEL-----LVQIPVVKESLRHLGFLVCEQDGFE--ADDLIGS 119
Query: 130 YKKKDPNNYV---IASMDKDILY--------------SNRGSHFNLKTNA--FFNVSQKE 170
Y + N V I S D+D+L + +N A FF ++ K+
Sbjct: 120 YARLMTQNNVAVDIYSSDRDLLQLVDSMTSVWLCVKGTKEMKEYNTDNFAEQFFGLTPKQ 179
Query: 171 AHFFAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNE 205
Y+ +VGD DN+ G+KGIG D L +
Sbjct: 180 V---IEYKGLVGDNSDNLTGIKGIGPKKGIDLLKQ 211
>pdb|1XO1|A Chain A, T5 5'-Exonuclease Mutant K83a
pdb|1XO1|B Chain B, T5 5'-Exonuclease Mutant K83a
Length = 291
Score = 41.6 bits (96), Expect = 0.010
Identities = 50/217 (23%), Positives = 91/217 (41%), Gaps = 25/217 (11%)
Query: 48 ILSIMHKTRCSKTLFFITRGRESFRYQLCDHYK----QKRHQFDEDFKALLRTLKIAIVE 103
I S+ T+ +G+ FR + Y +K Q E+ KAL + +
Sbjct: 51 IQSLAKSYSARTTIVLGDKGKSVFRLEHLPEYAGNRDEKYAQRTEEEKALDEQFFEYLKD 110
Query: 104 KYPLKKGA----KIQGEHCFEYEADDIISFYKKKDPNNY-----VIASMDKDILYSNRGS 154
+ L K I+G EADD+ ++ K + Y + D D L +++ S
Sbjct: 111 AFELCKTTFPTFTIRG-----VEADDMAAYIVKLIGHLYDHVWLISTDGDWDTLLTDKVS 165
Query: 155 HFNLKTNAFFNVSQKEAHF-------FAYYQCVVGDKGDNIKGVKGIGGFNYKDFLNEDA 207
F+ T +++ H F + ++GD GDNI+GV+GIG + + E
Sbjct: 166 RFSFTTRREYHLRDMYEHHNVDDVEQFISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFG 225
Query: 208 KEHELWEQIIQAFKIKEDLSDSEAKEKALLNMRLVNM 244
++ +Q+ K K + + ++E N+ LV++
Sbjct: 226 NVLDIIDQLPLPGKQKYIQNLNASEELLFRNLILVDL 262
>ref|NP_240243.1| (NC_002528) DNA polymerase I [Buchnera sp. APS]
sp|P57506|EX53_BUCAI Probable 5'-3' exonuclease
dbj|BAB13129.1| (AP001119) DNA polymerase I [Buchnera sp. APS]
Length = 286
Score = 41.6 bits (96), Expect = 0.010
Identities = 55/227 (24%), Positives = 97/227 (42%), Gaps = 32/227 (14%)
Query: 40 GVIFLTTQILSIMHKT--RCSKTLFFITRGRESFRYQLCDHYKQKRHQFDEDFKALLRTL 97
G I+ +I+ + K K + R++FR +L YK+ R + ++ L
Sbjct: 37 GAIYGMLKIIDNIFKKYKNLKKIIIIFDSSRKTFRNKLFKEYKKNRSSMPDLLVMQIQPL 96
Query: 98 KIAIVEKYPLKKGAKIQGEHCFEYEADDII---SFYKKKDPNNYVIASMDKDILY--SNR 152
I++K +K I G EADD+I S+ +K +I S DKD+L +
Sbjct: 97 -FEILKKIGIKT-LTIPG-----IEADDVIGSLSYQLEKQGEKILILSHDKDMLQLVTEN 149
Query: 153 GSHFNLKTNAF---------FNVSQKEAHFFAYYQCVVGDKGDNIKGVKGIGGFNYKDFL 203
+ F+ K N + + KE F + ++GD DNI GV IG +
Sbjct: 150 INIFHKKNNCIITSEIIQEKYGIKPKE---FIDFLALMGDATDNIPGVPKIGIKTALFLI 206
Query: 204 NEDAKEHELWEQI--IQAFKIKE----DLSDSEAKEKALLNMRLVNM 244
N+ + ++ I I++ ++ + KE+ALL+ +L +
Sbjct: 207 NKFSNIENIYNNIEKIKSLPLRNAKNISIQLKNNKERALLSYKLARI 253
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.323 0.139 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 175,968,036
Number of Sequences: 1026957
Number of extensions: 7059150
Number of successful extensions: 16675
Number of sequences better than 1.0e-02: 45
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 16631
Number of HSP's gapped (non-prelim): 45
length of query: 278
length of database: 324,149,939
effective HSP length: 119
effective length of query: 159
effective length of database: 201,942,056
effective search space: 32108786904
effective search space used: 32108786904
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 96 (41.6 bits)