BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645637|ref|NP_207813.1| hypothetical protein
[Helicobacter pylori 26695]
         (416 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207813.1|  (NC_000915) hypothetical protein [Helicoba...   846  0.0
ref|NP_223120.1|  (NC_000921) putative [Helicobacter pylori ...   806  0.0

>ref|NP_207813.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||G64647 hypothetical protein HP1023 - Helicobacter pylori (strain 26695)
 gb|AAD08071.1| (AE000610) H. pylori predicted coding region HP1023 [Helicobacter
           pylori 26695]
          Length = 416

 Score =  846 bits (2185), Expect = 0.0
 Identities = 416/416 (100%), Positives = 416/416 (100%)

Query: 1   MQYKKNKKRYYYLALGIFFLNGLSLKALEIAVKPFGYLGLLYNQGAQKNPHSYVGALARL 60
           MQYKKNKKRYYYLALGIFFLNGLSLKALEIAVKPFGYLGLLYNQGAQKNPHSYVGALARL
Sbjct: 1   MQYKKNKKRYYYLALGIFFLNGLSLKALEIAVKPFGYLGLLYNQGAQKNPHSYVGALARL 60

Query: 61  GVDFSYSNGWSFGIGAIGAWNIYNKQRLANLYISLGNFFGSSKNVKPYLSAGDVSDAYVQ 120
           GVDFSYSNGWSFGIGAIGAWNIYNKQRLANLYISLGNFFGSSKNVKPYLSAGDVSDAYVQ
Sbjct: 61  GVDFSYSNGWSFGIGAIGAWNIYNKQRLANLYISLGNFFGSSKNVKPYLSAGDVSDAYVQ 120

Query: 121 YTNQRFKIALGRFNTDFVDFDWIGGNIQGVSVAFKQNSMRYFGIFMDSMLYNGHQINKEQ 180
           YTNQRFKIALGRFNTDFVDFDWIGGNIQGVSVAFKQNSMRYFGIFMDSMLYNGHQINKEQ
Sbjct: 121 YTNQRFKIALGRFNTDFVDFDWIGGNIQGVSVAFKQNSMRYFGIFMDSMLYNGHQINKEQ 180

Query: 181 GNRIATSLNALASYDPVSKRLYVGGEVFVLGAEYRHENLKVVPFILTDTRLPLSTQNVLV 240
           GNRIATSLNALASYDPVSKRLYVGGEVFVLGAEYRHENLKVVPFILTDTRLPLSTQNVLV
Sbjct: 181 GNRIATSLNALASYDPVSKRLYVGGEVFVLGAEYRHENLKVVPFILTDTRLPLSTQNVLV 240

Query: 241 QVGGKLEYDASLAKGFTSHTLVHGMYQYGNTDAATSVKNAGLFLIDQTFKYKIFNFGTGF 300
           QVGGKLEYDASLAKGFTSHTLVHGMYQYGNTDAATSVKNAGLFLIDQTFKYKIFNFGTGF
Sbjct: 241 QVGGKLEYDASLAKGFTSHTLVHGMYQYGNTDAATSVKNAGLFLIDQTFKYKIFNFGTGF 300

Query: 301 YIVPARNNKGYLWTFNDRTKFYGRGINAPGVPAIYFANSSISGYVFLGLKTKRVRLDAMV 360
           YIVPARNNKGYLWTFNDRTKFYGRGINAPGVPAIYFANSSISGYVFLGLKTKRVRLDAMV
Sbjct: 301 YIVPARNNKGYLWTFNDRTKFYGRGINAPGVPAIYFANSSISGYVFLGLKTKRVRLDAMV 360

Query: 361 AFGDYQEYSLMSSFRVWTYRSLSFDMGGGYVYAYNSKATRKSLGNSSFVFFGKFLF 416
           AFGDYQEYSLMSSFRVWTYRSLSFDMGGGYVYAYNSKATRKSLGNSSFVFFGKFLF
Sbjct: 361 AFGDYQEYSLMSSFRVWTYRSLSFDMGGGYVYAYNSKATRKSLGNSSFVFFGKFLF 416



>ref|NP_223120.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||D71936 hypothetical protein jhp0401 - Helicobacter pylori (strain J99)
 gb|AAD05984.1| (AE001474) putative [Helicobacter pylori J99]
          Length = 416

 Score =  806 bits (2082), Expect = 0.0
 Identities = 395/416 (94%), Positives = 402/416 (95%)

Query: 1   MQYKKNKKRYYYLALGIFFLNGLSLKALEIAVKPFGYLGLLYNQGAQKNPHSYVGALARL 60
           MQYKKNKKRYY+LALGI F NGLSLKALEIAVKPFGYLGLLYNQG QKNPHSYVGALARL
Sbjct: 1   MQYKKNKKRYYHLALGILFCNGLSLKALEIAVKPFGYLGLLYNQGTQKNPHSYVGALARL 60

Query: 61  GVDFSYSNGWSFGIGAIGAWNIYNKQRLANLYISLGNFFGSSKNVKPYLSAGDVSDAYVQ 120
           GVDFSYSNGWSFGIGAIGAWNIYNKQRLANLYISLGNFFG+  NVKPYLSAGDVSDAY+Q
Sbjct: 61  GVDFSYSNGWSFGIGAIGAWNIYNKQRLANLYISLGNFFGNPNNVKPYLSAGDVSDAYLQ 120

Query: 121 YTNQRFKIALGRFNTDFVDFDWIGGNIQGVSVAFKQNSMRYFGIFMDSMLYNGHQINKEQ 180
           Y NQRFKIALGRFNTDFVDFDWIGGNIQGVSVAFKQNSMRYFGIFMDSMLYNGHQINKEQ
Sbjct: 121 YANQRFKIALGRFNTDFVDFDWIGGNIQGVSVAFKQNSMRYFGIFMDSMLYNGHQINKEQ 180

Query: 181 GNRIATSLNALASYDPVSKRLYVGGEVFVLGAEYRHENLKVVPFILTDTRLPLSTQNVLV 240
           GNRIATSLNALASYDPVSKRLYVGGEVFVLGAEY+++NL  VPFILTDTRLPL TQNVLV
Sbjct: 181 GNRIATSLNALASYDPVSKRLYVGGEVFVLGAEYKNKNLIFVPFILTDTRLPLPTQNVLV 240

Query: 241 QVGGKLEYDASLAKGFTSHTLVHGMYQYGNTDAATSVKNAGLFLIDQTFKYKIFNFGTGF 300
           QVGGKLEYDASLAKGFTS TLVHGMYQYGNTD  TS KNAGLFLIDQTFKYKIFNFGTGF
Sbjct: 241 QVGGKLEYDASLAKGFTSRTLVHGMYQYGNTDITTSAKNAGLFLIDQTFKYKIFNFGTGF 300

Query: 301 YIVPARNNKGYLWTFNDRTKFYGRGINAPGVPAIYFANSSISGYVFLGLKTKRVRLDAMV 360
           YIVPARNNKGYLWTFNDRTKFYGRGINAPGVPAIYFANSSISGYVFLGLKTKRVRLDAMV
Sbjct: 301 YIVPARNNKGYLWTFNDRTKFYGRGINAPGVPAIYFANSSISGYVFLGLKTKRVRLDAMV 360

Query: 361 AFGDYQEYSLMSSFRVWTYRSLSFDMGGGYVYAYNSKATRKSLGNSSFVFFGKFLF 416
           AFGDYQEYSLMSSFRVWTYR LSFDMGGGYVYAYNSKATRKSLG+SSFVFFGKFLF
Sbjct: 361 AFGDYQEYSLMSSFRVWTYRDLSFDMGGGYVYAYNSKATRKSLGDSSFVFFGKFLF 416



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.323    0.140    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 272,338,786
Number of Sequences: 1026957
Number of extensions: 12018069
Number of successful extensions: 23442
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23439
Number of HSP's gapped (non-prelim): 2
length of query: 416
length of database: 324,149,939
effective HSP length: 124
effective length of query: 292
effective length of database: 196,807,271
effective search space: 57467723132
effective search space used: 57467723132
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 99 (42.7 bits)