BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645640|ref|NP_207816.1| conserved hypothetical
helicase-like protein [Helicobacter pylori 26695]
(391 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207816.1| (NC_000915) conserved hypothetical helicas... 778 0.0
ref|NP_223117.1| (NC_000921) putative [Helicobacter pylori ... 729 0.0
ref|NP_281408.1| (NC_002163) helicase-like protein [Campylo... 348 8e-95
ref|NP_661652.1| (NC_002932) ATPase, AAA family [Chlorobium... 261 1e-68
ref|NP_603204.1| (NC_003454) ATPase associated with chromos... 258 6e-68
ref|NP_562703.1| (NC_003366) conserved hypothetical protein... 258 8e-68
ref|NP_228318.1| (NC_000853) conserved hypothetical protein... 254 2e-66
ref|NP_346223.1| (NC_003028) ATPase, AAA family [Streptococ... 249 5e-65
ref|NP_359208.1| (NC_003098) Chromosome segregation helicas... 249 5e-65
ref|NP_608032.1| (NC_003485) conserved hypothetical protein... 248 1e-64
ref|NP_269956.1| (NC_002737) conserved hypothetical protein... 246 4e-64
ref|NP_372151.1| (NC_002758) conserved hypothetical protein... 243 3e-63
ref|NP_646394.1| (NC_003923) conserved hypothetical protein... 243 4e-63
emb|CAA19102.1| (AL023591) hypothetical protein MLCB1259.27... 239 3e-62
ref|NP_301436.1| (NC_002677) conserved hypothetical protein... 239 3e-62
ref|NP_390631.1| (NC_000964) similar to hypothetical protei... 238 7e-62
ref|NP_266253.1| (NC_002662) chromosome segregation helicas... 234 1e-60
ref|NP_348297.1| (NC_003030) Predicted ATPase related to th... 233 4e-60
ref|NP_600847.1| (NC_003450) COG2256:Uncharacterized ATPase... 231 1e-59
ref|NP_217075.1| (NC_000962) hypothetical protein Rv2559c [... 229 3e-59
ref|NP_346967.1| (NC_003030) ATPase related to the helicase... 229 5e-59
ref|NP_658428.1| (NC_003995) AAA, ATPase family associated ... 229 5e-59
ref|NP_470885.1| (NC_003212) similar to unknown protein [Li... 228 7e-59
ref|NP_625786.1| (NC_003888) conserved ATP/GTP binding prot... 228 1e-58
ref|NP_284161.1| (NC_003116) hypothetical protein NMA1433 [... 226 3e-58
ref|NP_242123.1| (NC_002570) BH1257~unknown conserved prote... 226 3e-58
ref|NP_274280.1| (NC_003112) conserved hypothetical protein... 226 5e-58
ref|NP_173839.1| (NM_102275) hypothetical protein [Arabidop... 225 6e-58
ref|NP_295621.1| (NC_001263) conserved hypothetical protein... 224 2e-57
ref|NP_465039.1| (NC_003210) similar to unknown protein [Li... 223 2e-57
ref|NP_014181.1| (NC_001146) Maintenance of Genome Stabilit... 223 4e-57
emb|CAA55489.1| (X78898) SRC strictly conserved sequence [S... 223 4e-57
ref|NP_623374.1| (NC_003869) uncharacterized ATPase related... 222 7e-57
ref|NP_251303.1| (NC_002516) conserved hypothetical protein... 219 4e-56
pir||T51223 hypothetical protein B24M22.190 [imported] - Ne... 216 4e-55
sp|P39918|YCAJ_COXBU Hypothetical 49.9 kDa protein in SPOII... 215 8e-55
gb|AAG15220.1|AF288461_6 (AF288461) unknown [Chloroflexus a... 215 8e-55
gb|AAF80563.1|AF218313_1 (AF218313) putative helicase RUVBL... 213 3e-54
ref|NP_245194.1| (NC_002663) unknown [Pasteurella multocida... 213 3e-54
ref|NP_064520.2| (NM_020135) Werner helicase interacting pr... 213 3e-54
ref|NP_230753.1| (NC_002505) conserved hypothetical protein... 211 9e-54
ref|NP_439735.1| (NC_000907) conserved hypothetical protein... 211 1e-53
ref|NP_385491.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN... 210 3e-53
ref|XP_109318.1| (XM_109318) Werner syndrome homolog (human... 210 3e-53
dbj|BAB60709.1| (AB056152) Werner helicase interacting prot... 210 3e-53
gb|AAH10482.1|AAH10482 (BC010482) Unknown (protein for MGC:... 210 3e-53
ref|NP_078028.1| (NC_002162) conserved hypothetical ATP/GTP... 209 6e-53
ref|NP_102147.1| (NC_002678) hypothetical protein [Mesorhiz... 209 6e-53
ref|NP_594449.1| (NC_003424) putative replication factor su... 207 2e-52
ref|NP_084491.1| (NM_030215) Werner syndrome homolog (human... 206 3e-52
ref|NP_420096.1| (NC_002696) ATPase, AAA family [Caulobacte... 205 6e-52
ref|NP_354889.1| (NC_003062) AGR_C_3505p [Agrobacterium tum... 203 3e-51
gb|AAL93026.1|AC116032_15 (AC116032) PUTATIVE HELICASE RUVB... 201 9e-51
gb|AAG35725.1|AF208046_1 (AF208046) RuvB-like RUVBL1 [Mus m... 201 1e-50
ref|NP_309004.1| (NC_002695) putative polynucleotide enzyme... 199 4e-50
ref|NP_286769.1| (NC_002655) putative polynucleotide enzyme... 198 8e-50
ref|NP_455450.1| (NC_003198) conserevd hypothetical protein... 196 3e-49
ref|NP_404971.1| (NC_003143) putative ATPase protein [Yersi... 196 4e-49
gb|EAA00093.1| (AAAB01008986) agCP10030 [Anopheles gambiae ... 196 4e-49
ref|NP_539701.1| (NC_003317) ATPase associated with chromos... 196 4e-49
ref|NP_520459.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN... 192 4e-48
ref|NP_637341.1| (NC_003902) ATPase [Xanthomonas campestris... 191 1e-47
ref|NP_569079.1| (NM_130395) Werner helicase interacting pr... 190 2e-47
ref|NP_642336.1| (NC_003919) ATPase [Xanthomonas axonopodis... 187 1e-46
ref|NP_298742.1| (NC_002488) conserved hypothetical protein... 172 8e-42
pir||S43134 hypothetical protein - Coxiella burnetii >gi|58... 167 3e-40
gb|AAD00283.1| (U78602) hypothetical protein [Streptococcus... 140 3e-32
dbj|BAB15383.1| (AK026179) unnamed protein product [Homo sa... 130 2e-29
emb|CAA74750.1| (Y14394) helicase-like protein [Helicobacte... 111 1e-23
emb|CAC00808.1| (AL390935) probable hypothetical 48.4 Kd pr... 85 2e-15
ref|NP_224590.1| (NC_000922) Holliday Junction Helicase [Ch... 80 5e-14
ref|NP_300447.1| (NC_002491) holliday junction helicase [Ch... 80 5e-14
ref|NP_275384.1| (NC_000916) replication factor C, small su... 77 3e-13
ref|NP_296689.1| (NC_002620) Holliday junction DNA helicase... 75 1e-12
ref|NP_360170.1| (NC_003103) holliday junction DNA helicase... 74 3e-12
sp|Q92I87|RUVB_RICCN Holliday junction DNA helicase ruvB 74 3e-12
pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant 74 4e-12
ref|NP_229528.1| (NC_000853) Holliday junction DNA helicase... 73 5e-12
ref|NP_207850.1| (NC_000915) Holliday junction DNA helicase... 72 8e-12
sp|O14003|RFC3_SCHPO Activator 1 40 kDa subunit (Replicatio... 72 8e-12
ref|NP_604114.1| (NC_003454) Holliday junction DNA helicase... 72 1e-11
pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader S... 72 1e-11
pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v 72 1e-11
ref|NP_223085.1| (NC_000921) HOLLIDAY JUNCTION DNA HELICASE... 72 1e-11
pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant 72 1e-11
pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant 72 1e-11
pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a 71 2e-11
sp|Q93LP2|RUVB_BURCE Holliday junction DNA helicase ruvB >g... 70 3e-11
ref|NP_219543.1| (NC_000117) Holliday Junction Helicase [Ch... 69 7e-11
ref|NP_014109.1| (NC_001146) RFC is a DNA binding protein a... 69 1e-10
emb|CAA07618.1| (AJ007712) replication factor C subunit [Ar... 69 1e-10
ref|NP_294319.1| (NC_001263) Holliday junction DNA helicase... 67 4e-10
dbj|BAA76366.1| (D84298) ruvB protein [Deinococcus radiodur... 67 4e-10
ref|NP_220767.1| (NC_000963) HOLLIDAY JUNCTION DNA HELICASE... 67 4e-10
ref|NP_342275.1| (NC_002754) Activator 1, replication facto... 67 5e-10
ref|NP_376359.1| (NC_003106) 327aa long hypothetical replic... 66 8e-10
ref|NP_422030.1| (NC_002696) Holliday junction DNA helicase... 66 8e-10
ref|NP_147997.1| (NC_000854) replication factor C subunit [... 66 8e-10
ref|NP_356898.1| (NC_003063) AGR_L_2225p [Agrobacterium tum... 65 1e-09
pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermoph... 65 2e-09
dbj|BAA76480.2| (AB015236) RuvB [Thermus thermophilus] 65 2e-09
pir||T11851 ruvB Protein - Thermus aquaticus thermophilus 65 2e-09
ref|NP_372165.1| (NC_002758) holliday junction DNA helicase... 65 2e-09
sp|Q56214|RUVB_THETH Holliday junction DNA helicase ruvB >g... 65 2e-09
ref|NP_609399.1| (NM_135555) RfC3 gene product [Drosophila ... 64 3e-09
ref|NP_245913.1| (NC_002663) RuvB [Pasteurella multocida] >... 64 4e-09
sp|Q9L9C3|RUVB_RHIET Holliday junction DNA helicase ruvB >g... 63 5e-09
ref|NP_348901.1| (NC_003030) Holliday junction specific DNA... 63 5e-09
ref|NP_622807.1| (NC_003869) Holliday junction resolvasome ... 63 5e-09
ref|NP_405610.1| (NC_003143) Holliday junction DNA helicase... 63 7e-09
ref|NP_104905.1| (NC_002678) RuvB; Holliday branch migratio... 62 9e-09
ref|NP_326489.1| (NC_002771) HOLLIDAY JUNCTION DNA HELICASE... 62 9e-09
ref|NP_386855.1| (NC_003047) PROBABLE HOLLIDAY JUNCTION DNA... 62 1e-08
ref|NP_282508.1| (NC_002163) holliday junction DNA helicase... 62 1e-08
ref|NP_562863.1| (NC_003366) holliday junction DNA helicase... 62 1e-08
ref|NP_212156.1| (NC_001318) Holliday junction DNA helicase... 62 1e-08
sp|P09122|DP3X_BACSU DNA polymerase III subunit gamma/tau 62 1e-08
ref|NP_539251.1| (NC_003317) HOLLIDAY JUNCTION DNA HELICASE... 62 1e-08
ref|NP_387900.1| (NC_000964) DNA polymerase III (gamma and ... 62 1e-08
emb|CAA29958.1| (X06803) dnaZX-like ORF put. DNA polymerase... 62 1e-08
ref|NP_342276.1| (NC_002754) Activator 1, replication facto... 61 2e-08
ref|NP_231479.1| (NC_002505) Holliday junction DNA helicase... 61 2e-08
ref|NP_594540.1| (NC_003424) replication factor C activator... 61 3e-08
sp|Q9KDI8|RUVB_BACHD Holliday junction DNA helicase ruvB 60 3e-08
ref|NP_299188.1| (NC_002488) holliday junction binding prot... 60 3e-08
ref|NP_465057.1| (NC_003210) highly similar to Holliday jun... 60 4e-08
ref|NP_470903.1| (NC_003212) highly similar to Holliday jun... 60 4e-08
ref|NP_518621.1| (NC_003295) PROBABLE HOLLIDAY JUNCTION DNA... 60 4e-08
ref|NP_633845.1| (NC_003901) replication factor C subunit [... 60 6e-08
ref|NP_438478.1| (NC_000907) Holliday junction DNA helicase... 59 7e-08
gb|EAA09454.1| (AAAB01008900) agCP15104 [Anopheles gambiae ... 59 7e-08
ref|NP_274267.1| (NC_003112) Holliday junction DNA helicase... 59 7e-08
ref|NP_486934.1| (NC_003272) Holliday junction DNA helicase... 59 1e-07
ref|NP_012602.1| (NC_001142) RFC is a DNA binding protein a... 59 1e-07
ref|NP_625797.1| (NC_003888) holliday junction DNA helicase... 59 1e-07
ref|NP_376358.1| (NC_003106) 413aa long hypothetical replic... 59 1e-07
ref|NP_288297.1| (NC_002655) Holliday junction helicase sub... 59 1e-07
ref|NP_558807.1| (NC_003364) replication factor C small sub... 58 2e-07
ref|NP_284146.1| (NC_003116) putative Holliday junction DNA... 58 2e-07
ref|NP_638370.1| (NC_003902) holliday junction binding prot... 58 2e-07
ref|NP_240900.1| (NC_002570) DNA polymerase III gamma and t... 58 2e-07
ref|NP_070884.1| (NC_000917) activator 1, replication facto... 58 2e-07
ref|NP_645250.1| (NC_003923) DNA polymerase III gamma and t... 58 2e-07
ref|NP_643455.1| (NC_003919) holliday junction binding prot... 58 2e-07
ref|NP_390651.1| (NC_000964) Holliday junction resolvasome ... 57 3e-07
sp|O32055|RUVB_BACSU Holliday junction DNA helicase ruvB >g... 57 3e-07
pir||JC5477 DNA-binding protein ruvB - Pseudomonas aeruginosa 57 4e-07
ref|NP_442280.1| (NC_000911) Holliday junction DNA helicase... 57 4e-07
ref|NP_249658.1| (NC_002516) Holliday junction DNA helicase... 57 4e-07
ref|NP_653973.1| (NC_003995) AAA, ATPase family associated ... 57 4e-07
dbj|BAA11819.1| (D83138) Holliday junction specific DNA hel... 57 4e-07
ref|NP_559445.1| (NC_003364) replication factor C small sub... 57 5e-07
ref|NP_002907.1| (NM_002916) replication factor C (activato... 56 6e-07
ref|XP_113422.1| (XM_113422) replication factor C (activato... 56 6e-07
pir||A45253 activator 1 37K chain - human 56 6e-07
ref|NP_584594.1| (NC_003229) DNA REPLICATION FACTOR (ACTIVA... 56 8e-07
sp|P34429|AC11_CAEEL Putative activator 1 36 kDa subunit (R... 56 8e-07
gb|AAB82595.1| (AF025391) DNA polymerase III holoenzyme tau... 55 1e-06
gb|AAF52944.1| (AE003628) RfC3 gene product [Drosophila mel... 55 1e-06
ref|XP_148470.1| (XM_148470) similar to CG8142 gene product... 55 1e-06
gb|AAH03335.1|AAH03335 (BC003335) Similar to replication fa... 55 1e-06
ref|NP_658448.1| (NC_003995) AAA, ATPase family associated ... 55 1e-06
ref|NP_073030.1| (NC_000908) Holliday junction DNA helicase... 55 1e-06
ref|NP_597056.1| (NC_003238) REPLICATION FACTOR C (ACTIVATO... 55 2e-06
ref|NP_498750.1| (NM_066349) ARPA [Caenorhabditis elegans] ... 55 2e-06
ref|NP_662513.1| (NC_002932) Holliday junction DNA helicase... 55 2e-06
ref|NP_473096.1| (NC_000910) replication factor C, 40 kDa s... 54 2e-06
gb|AAG37987.1|AF071409_1 (AF071409) replication factor C su... 54 2e-06
ref|NP_325880.1| (NC_002771) DNA POLYMERASE III SUBUNIT GAM... 54 3e-06
ref|NP_371002.1| (NC_002758) DNA polymerase III gamma and t... 54 3e-06
dbj|BAB16441.1| (AB045677) OsRFC 37 kDa subunit [Oryza sati... 54 3e-06
ref|NP_350296.1| (NC_003030) Lon-like ATP-dependent proteas... 54 3e-06
ref|NP_456461.1| (NC_003198) Holliday junction DNA helicase... 54 4e-06
emb|CAC12618.1| (AL445067) probable replication factor C, 4... 53 5e-06
ref|NP_177871.1| (NM_106396) putative replication factor C ... 53 5e-06
ref|NP_394950.1| (NC_002578) ATPase involved in DNA replica... 53 5e-06
ref|NP_217108.1| (NC_000962) ruvB [Mycobacterium tuberculos... 53 7e-06
gb|AAK19840.1|AF331924_5 (AF038651) Holliday junction DNA-h... 52 9e-06
ref|NP_600872.1| (NC_003450) COG2255:Holliday junction reso... 52 9e-06
dbj|BAB99053.1| (AP005279) Holliday junction resolvasome he... 52 9e-06
ref|NP_472180.1| (NC_003212) highly similar to DNA polymera... 52 9e-06
gb|AAG37985.1|AF069296_1 (AF069296) replication factor C3 [... 52 9e-06
sp|Q9AE09|RUVB_CORGL Holliday junction DNA helicase ruvB 52 9e-06
ref|NP_301423.1| (NC_002677) Holliday junction helicase com... 52 9e-06
ref|NP_466226.1| (NC_003210) highly similar to DNA polymera... 52 9e-06
dbj|BAB16439.1| (AB038319) replication factor C 36kDa subun... 52 1e-05
ref|NP_563551.1| (NC_003366) probable ATP-dependent protein... 52 1e-05
ref|NP_110225.1| (NC_000912) Holliday junction DNA helicase... 52 2e-05
ref|NP_218601.1| (NC_000919) Holliday junction DNA helicase... 51 2e-05
ref|NP_564148.1| (NM_102018) putative replication factor [A... 51 2e-05
ref|NP_573245.1| (NM_133017) CG8142 gene product [Drosophil... 51 3e-05
ref|NP_584556.1| (NC_003229) DNA REPLICATION FACTOR C (ACTI... 50 3e-05
gb|AAD41422.1|AC007727_11 (AC007727) Similar to gb|M87339 r... 50 3e-05
ref|NP_031396.1| (NM_007370) replication factor C (activato... 50 3e-05
ref|NP_613293.1| (NC_003551) Replication factor C (ATPase i... 50 5e-05
ref|NP_498521.1| (NM_066120) Replication factor C [Caenorha... 50 6e-05
gb|EAA08477.1| (AAAB01008879) agCP2869 [Anopheles gambiae s... 50 6e-05
ref|NP_615630.1| (NC_003552) replication factor C, small su... 49 8e-05
dbj|BAB60660.1| (AP000996) replication factor C subunit [Th... 49 8e-05
ref|NP_112010.1| (NC_002689) ATPase involved in DNA replica... 49 8e-05
ref|NP_523915.1| (NM_079191) Replication-factor-C 40kD subu... 49 1e-04
pir||S72734 DNA-binding protein ruvB - Mycobacterium leprae... 48 2e-04
ref|NP_218238.1| (NC_000962) dnaZX [Mycobacterium tuberculo... 48 2e-04
ref|NP_606369.1| (NC_003485) putative Holliday junction DNA... 48 2e-04
ref|XP_132348.1| (XM_132348) similar to data source:SPTR, s... 48 2e-04
ref|NP_268453.1| (NC_002737) putative Holliday junction DNA... 48 2e-04
ref|NP_275383.1| (NC_000916) replication factor C, large su... 48 2e-04
ref|NP_594412.1| (NC_003424) Replication factor C 36 KD sub... 47 3e-04
ref|NP_633450.1| (NC_003901) replication factor C subunit [... 47 4e-04
ref|NP_344797.1| (NC_003028) Holliday junction DNA helicase... 46 7e-04
ref|NP_247879.1| (NC_000909) activator 1 (replication facto... 46 7e-04
ref|NP_615114.1| (NC_003552) replication factor C subunit [... 46 9e-04
ref|NP_357832.1| (NC_003098) Branch migration of Holliday s... 46 9e-04
ref|NP_500069.1| (NM_067668) DNA replication factor [Caenor... 46 9e-04
gb|AAC45724.1| (U55214) RuvB' [Treponema pallidum] 44 0.003
ref|NP_142123.1| (NC_000961) replication factor C subunit [... 44 0.004
ref|NP_248426.1| (NC_000909) activator 1 (replication facto... 44 0.004
ref|NP_070024.1| (NC_000917) activator 1, replication facto... 43 0.006
ref|NP_077667.1| (NC_002687) EsV-1-182 [Ectocarpus siliculo... 43 0.006
ref|NP_224011.1| (NC_000921) ATP-DEPENDENT PROTEASE LA [Hel... 42 0.009
ref|NP_562307.1| (NC_003366) Lon-like ATP-dependent proteas... 42 0.009
ref|NP_208170.1| (NC_000915) ATP-dependent protease (lon) [... 42 0.009
ref|NP_577821.1| (NC_003413) replication factor C, large su... 42 0.009
ref|NP_268363.1| (NC_002662) DNA helicase RuvB [Lactococcus... 42 0.009
>ref|NP_207816.1| (NC_000915) conserved hypothetical helicase-like protein
[Helicobacter pylori 26695]
pir||B64648 conserved hypothetical helicase-like protein HP1026 - Helicobacter
pylori (strain 26695)
gb|AAD08068.1| (AE000610) conserved hypothetical helicase-like protein
[Helicobacter pylori 26695]
Length = 391
Score = 778 bits (2009), Expect = 0.0
Identities = 391/391 (100%), Positives = 391/391 (100%)
Query: 1 MSLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYM 60
MSLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYM
Sbjct: 1 MSLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYM 60
Query: 61 LERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHAL 120
LERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHAL
Sbjct: 61 LERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHAL 120
Query: 121 ILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIEPGAKTYLLNN 180
ILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIEPGAKTYLLNN
Sbjct: 121 ILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIEPGAKTYLLNN 180
Query: 181 SAGDARALLNLLDLSAKIEDPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD 240
SAGDARALLNLLDLSAKIEDPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
Sbjct: 181 SAGDARALLNLLDLSAKIEDPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD 240
Query: 241 ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFAVKQIGYPEAR 300
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFAVKQIGYPEAR
Sbjct: 241 ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFAVKQIGYPEAR 300
Query: 301 IILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVK 360
IILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVK
Sbjct: 301 IILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVK 360
Query: 361 QDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN 391
QDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN
Sbjct: 361 QDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN 391
>ref|NP_223117.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71936 hypothetical protein jhp0398 - Helicobacter pylori (strain J99)
gb|AAD05978.1| (AE001474) putative [Helicobacter pylori J99]
Length = 391
Score = 729 bits (1882), Expect = 0.0
Identities = 365/391 (93%), Positives = 376/391 (95%)
Query: 1 MSLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYM 60
MSLT LLNPKSLE+FLGQEHL+GKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIA
Sbjct: 1 MSLTVLLNPKSLEEFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARS 60
Query: 61 LERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHAL 120
L+RPIL FNATDFKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEK+ AL
Sbjct: 61 LKRPILSFNATDFKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKNRAL 120
Query: 121 ILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIEPGAKTYLLNN 180
ILGASTQDPNYSLSHAIRSRSF FELTPL KSDLDRLC KALTLLKKQIEPGAKTYLLNN
Sbjct: 121 ILGASTQDPNYSLSHAIRSRSFTFELTPLKKSDLDRLCDKALTLLKKQIEPGAKTYLLNN 180
Query: 181 SAGDARALLNLLDLSAKIEDPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD 240
SAGDARALLNLLDLSAKIE+PITLKTLQSLRPHSLNDGSY+DDTHYNLTSALIKSLRGSD
Sbjct: 181 SAGDARALLNLLDLSAKIENPITLKTLQSLRPHSLNDGSYNDDTHYNLTSALIKSLRGSD 240
Query: 241 ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFAVKQIGYPEAR 300
ENAS+YYL RL+AGGENPEFIARRLVIFASEDIGNANPNALNLAASCLF+VKQIGYPEAR
Sbjct: 241 ENASMYYLTRLVAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEAR 300
Query: 301 IILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVK 360
IILSQCVIYL CSPK NTAY+AINQALDCVQKG Y IPKHLLPN KDYLYPHDYNGYVK
Sbjct: 301 IILSQCVIYLVCSPKFNTAYKAINQALDCVQKGLFYLIPKHLLPNVKDYLYPHDYNGYVK 360
Query: 361 QDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN 391
QDYLEKPL+LVSSQGIGFEKTLLEWLDKIRN
Sbjct: 361 QDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN 391
>ref|NP_281408.1| (NC_002163) helicase-like protein [Campylobacter jejuni]
pir||E81438 helicase-like protein Cj0198c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB72681.1| (AL139074) helicase-like protein [Campylobacter jejuni]
Length = 393
Score = 348 bits (892), Expect = 8e-95
Identities = 196/395 (49%), Positives = 267/395 (66%), Gaps = 9/395 (2%)
Query: 1 MSLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYM 60
MSL P++ +D LGQ L+ + F ALQ PH+ F+G G GKT+ A+++A
Sbjct: 1 MSLALTFRPENFDDILGQYELI-EIFKKFTALQK--LPHSIFFGTAGSGKTTFARVVAKE 57
Query: 61 LERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHAL 120
F+ +FKLE+LR L NY+N+L KP++FIDE HRL+KTQQE LL ME +
Sbjct: 58 FGLDFYEFDGGNFKLEELRKILDNYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLI 117
Query: 121 ILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIEPGAKTYLLNN 180
++GAST++P + LS IRSRS +FE L +L+ L + +K I+ AK +LL +
Sbjct: 118 LIGASTENPYFVLSSGIRSRSMLFEFKSLGAKELETLLLRVQEKMKFSIDKEAKDFLLKS 177
Query: 181 SAGDARALLNLLDLSAKIEDP-ITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGS 239
+ DARA+LNLL+ +++ I+L+ L+ LR ++G S DTHY L SA+IKSLRGS
Sbjct: 178 A--DARAMLNLLEFVLVLDEKHISLENLKKLRNTINSEGVSSKDTHYILASAMIKSLRGS 235
Query: 240 DENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFAVKQIGYPEA 299
D +A+IYYLARLI GE+ +FIARRLVIF+SED+GNA+PNALNLA S L AVK IGYPEA
Sbjct: 236 DVDAAIYYLARLIDAGESADFIARRLVIFSSEDVGNADPNALNLAVSTLDAVKNIGYPEA 295
Query: 300 RIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHLLPN---AKDYLYPHDYN 356
RIIL+QCV+YLA + KSN +Y+AIN+AL+ V+ IP +L N ++YLYPHD+
Sbjct: 296 RIILAQCVVYLASTIKSNASYKAINEALNYVKNNEALEIPNYLNNNHQEKQNYLYPHDFG 355
Query: 357 GYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN 391
G+V+Q YL K L S+G+G E LL+ L K++N
Sbjct: 356 GWVEQKYLGKNLKFYHSKGLGEEAKLLDNLYKLKN 390
>ref|NP_661652.1| (NC_002932) ATPase, AAA family [Chlorobium tepidum TLS]
gb|AAM71994.1| (AE012845) ATPase, AAA family [Chlorobium tepidum TLS]
Length = 451
Score = 261 bits (666), Expect = 1e-68
Identities = 159/414 (38%), Positives = 239/414 (57%), Gaps = 29/414 (7%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLE 62
L + P+S+++ GQEHLVG P+ L+ P F+GPPG GKT+LA+I A L
Sbjct: 29 LAERVRPRSIDELFGQEHLVGPGGPVRSYLEQGRIPSMIFWGPPGSGKTTLAEICARSLN 88
Query: 63 RPILLFNATDFKLEDLRLKLKNYQNTLL----KPVVFIDETHRLNKTQQEFLLPIMEKDH 118
+ATD ++D+R L+ Q + + ++FIDE HR NK QQ+ LL +E+
Sbjct: 89 YRFEQLSATDAGVKDVRRVLELAQKSRSIDGRQMLLFIDEIHRFNKAQQDTLLHAIEQGL 148
Query: 119 ALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALT----LLKKQIEPGAK 174
+++GA+T++P++ ++ A+ SR ++ L PL+++++ R+ +A+ L +E
Sbjct: 149 IVLIGATTENPSFEVNRALLSRMQVYILNPLSEAEVRRVVERAIESDPQLAAAGVEMRDM 208
Query: 175 TYLLNNSAGDARALLNLLDLSAKIED----PITLKT--LQSLRPHSLNDGSYSDDTHYNL 228
+LL +AGDAR LN L+ + + P+ + L+ H + HY+
Sbjct: 209 EFLLAYAAGDARKALNALEAALSLAPRGTAPVVIDRTRLEQALQHRAPTYDKGGEAHYDT 268
Query: 229 TSALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCL 288
SA IKS+RGSD +A+++++A++I GGE+P+FIARR+VIFASEDIGNA+P AL LA S
Sbjct: 269 VSAFIKSMRGSDPDAALFWMAKMIDGGEDPKFIARRMVIFASEDIGNADPYALTLAVSVF 328
Query: 289 FAVKQIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHLLPNA-- 346
AV+ IG PEARI L+Q YLA PKSN +Y IN+AL V+KG+ +P L NA
Sbjct: 329 HAVELIGLPEARINLAQGATYLASCPKSNASYEGINEALSDVKKGAANAVPPLYLRNAPT 388
Query: 347 ---------KDYLYPHDYNG-YVKQDYLE---KPLDLVSSQGIGFEKTLLEWLD 387
K Y YPH Y G +V++ Y +P G G EK + E L+
Sbjct: 389 DLMKEIGYGKGYRYPHSYPGHFVEEHYFPEQMEPKAYYRPTGEGREKFIRERLE 442
>ref|NP_603204.1| (NC_003454) ATPase associated with chromosome
architecture/replication [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gb|AAL94503.1| (AE010542) ATPase associated with chromosome
architecture/replication [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 407
Score = 258 bits (660), Expect = 6e-68
Identities = 147/388 (37%), Positives = 229/388 (58%), Gaps = 6/388 (1%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERPIL 66
L PKSL+DF+GQE L+GKD + + + + ++ FYGPPG GK+SL +II+ L+
Sbjct: 18 LRPKSLDDFVGQEKLLGKDGVITRLILNSTLSNSIFYGPPGCGKSSLGEIISNTLDCNFE 77
Query: 67 LFNATDFKLEDLRLKLKNYQNTL----LKPVVFIDETHRLNKTQQEFLLPIMEKDHALIL 122
NAT + D+R ++ + + + ++F+DE HR NK QQ+ LL E ++
Sbjct: 78 KLNATTASVSDIRNVVETARRNIELYNKRTILFLDEIHRFNKNQQDALLSYTEDGTLTLI 137
Query: 123 GASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIEPGAKTYLLNNSA 182
GA+T++P Y++++A+ SR +FE L D+ +L K L L + K +++ S
Sbjct: 138 GATTENPYYNINNALLSRVMVFEFKALTNEDILKLIDKGLNFLNICMGDKIKEIIVDISQ 197
Query: 183 GDARALLNLLDLSAKIEDPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSDEN 242
GD+R LN +++ I ++ + S+ D Y++ SA IKS+RGSD +
Sbjct: 198 GDSRIALNYVEMYNNIHSQMSEDEIFSIFKERQVSFDKKQDK-YDMISAFIKSIRGSDPD 256
Query: 243 ASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFAVKQIGYPEARII 302
A++Y+LARL+ GGE+P+++ARRL I ASEDIG ANP AL +A + + A ++IG PE RII
Sbjct: 257 AAVYWLARLLDGGEDPKYMARRLFIEASEDIGMANPEALLVANAAMNACEKIGMPEVRII 316
Query: 303 LSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDY-NGYVKQ 361
L+ IYLA S KSN+ Y AI+ AL ++KG L +P ++ + Y YPH+Y + ++KQ
Sbjct: 317 LAHTTIYLAISSKSNSVYEAIDGALADIKKGELQEVPMNICHDNVGYKYPHNYTDNFIKQ 376
Query: 362 DYLEKPLDLVSSQGIGFEKTLLEWLDKI 389
Y+ K EK + E L K+
Sbjct: 377 KYMNKKRKYYKPGNNKNEKLIAEKLAKL 404
>ref|NP_562703.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB81493.1| (AP003191) conserved hypothetical protein [Clostridium perfringens]
Length = 408
Score = 258 bits (659), Expect = 8e-68
Identities = 150/379 (39%), Positives = 233/379 (60%), Gaps = 23/379 (6%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERPIL 66
+ PK LED +GQ+H+VG+ PL K +++K+ + FYGPPGVGKT+LA II+ ++
Sbjct: 1 MRPKKLEDIVGQKHIVGEGTPLNKLIKNKNIINCIFYGPPGVGKTTLANIISNYTDKKFY 60
Query: 67 LFNATDFKLEDLRLKLKNYQNTL-LKPVV-FIDETHRLNKTQQEFLLPIMEKDHALILGA 124
NAT +++++ + N L K ++ +IDE NK QQ+ LL +E +++ +
Sbjct: 61 KINATTSSIKEIQSITSDIDNLLNFKGIILYIDELQHFNKKQQQALLEFIEDGRVILIAS 120
Query: 125 STQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQ-----IEPGAKTYLLN 179
+T++P +++ AI SRS IF+ P++ D+ +A++ L+K+ +E G Y+ +
Sbjct: 121 TTENPYFAIHKAILSRSTIFQFKPVSTEDIIIALERAVSKLEKEGYVISLEEGVLKYIGD 180
Query: 180 NSAGDARALLNLLDLSAKIEDP----ITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKS 235
S GD R +L+L+ K ++ + + ++ L +L S DD +YNL SAL KS
Sbjct: 181 ISQGDVRKAYTVLELAIKSQEKDNILLNKEYVEKLGQSNLKSDSSGDD-YYNLLSALQKS 239
Query: 236 LRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFAVKQIG 295
+RGSD +ASI+YLARLI GG N + + RR+ + A+EDIG A+PNAL + S + +IG
Sbjct: 240 IRGSDPDASIHYLARLIKGG-NMDSVIRRIGVIAAEDIGLAHPNALQVVNSGIDLALKIG 298
Query: 296 YPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHLLP---------NA 346
PEARIILS+ VIYLA PKSN+AY AI++AL +++ + +PKHL
Sbjct: 299 MPEARIILSELVIYLATLPKSNSAYMAIDEALRDLERNNAGDVPKHLKDAHYSGASNLGV 358
Query: 347 KDYLYPHDY-NGYVKQDYL 364
YLYPH+Y NGY+ Q+Y+
Sbjct: 359 GGYLYPHNYPNGYINQEYM 377
>ref|NP_228318.1| (NC_000853) conserved hypothetical protein [Thermotoga maritima]
sp|Q9WYX8|Y508_THEMA Hypothetical protein TM0508
pir||B72368 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
gb|AAD35593.1|AE001727_5 (AE001727) conserved hypothetical protein [Thermotoga maritima]
Length = 599
Score = 254 bits (648), Expect = 2e-66
Identities = 144/401 (35%), Positives = 238/401 (58%), Gaps = 17/401 (4%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLE 62
L+ LL PK EDF+GQ+H+ G L + L++ + + YGPPG GKTS+ ++
Sbjct: 8 LSELLRPKDFEDFVGQDHIFGNKGILRRTLKTGNMFSSILYGPPGSGKTSVFSLLKRYFN 67
Query: 63 RPILLFNATDFKLEDLRLKLKNYQNTLL---KPVVFIDETHRLNKTQQEFLLPIMEKDHA 119
++ ++T + +++ LK + K ++F+DE HRLNK QQ L+ +E+
Sbjct: 68 GEVVYLSSTVHGVSEIKNVLKRGEQLRKYGKKLLLFLDEIHRLNKNQQMVLVSHVERGDI 127
Query: 120 LILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIEPGAKTYLLN 179
+++ +T++P++ + A+ SR I L+ DL ++ KA +L +E + ++
Sbjct: 128 VLVATTTENPSFVIVPALLSRCRILYFKKLSDEDLMKILKKATEVLNIDLEESVEKAIVR 187
Query: 180 NSAGDARALLNLLDL--SAKIEDPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLR 237
+S GDAR LLN L++ A +TL+ L++L N Y+ ++HY+ SA IKS+R
Sbjct: 188 HSEGDARKLLNTLEIVHQAFKNKRVTLEDLETLLG---NVSGYTKESHYDFASAFIKSMR 244
Query: 238 GSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFAVKQIGYP 297
GSD NA++YYL ++I GE+P FIARR++IFASED+G A+PNAL++A S AV+ +G P
Sbjct: 245 GSDPNAAVYYLVKMIEMGEDPRFIARRMIIFASEDVGLADPNALHIAVSTSIAVEHVGLP 304
Query: 298 EARIILSQCVIYLACSPKSNTAYRAINQALDC-VQKGSLY---PIPKHLLPN--AKDYLY 351
E + L +C +YL+ +PKSN+ Y A+ + + V+ L+ P+ + + + YLY
Sbjct: 305 ECLMNLVECAVYLSLAPKSNSVYLAMKKVQELPVEDVPLFLRNPVTEEMKKRGYGEGYLY 364
Query: 352 PHDYNGYVKQDYLEKPLD---LVSSQGIGFEKTLLEWLDKI 389
PHD+ G+VK +YL + L + + +GFE+ L E L K+
Sbjct: 365 PHDFGGFVKTNYLPEKLKNEVIFQPKRVGFEEELFERLRKL 405
>ref|NP_346223.1| (NC_003028) ATPase, AAA family [Streptococcus pneumoniae TIGR4]
gb|AAK75863.1| (AE007472) ATPase, AAA family [Streptococcus pneumoniae TIGR4]
Length = 423
Score = 249 bits (635), Expect = 5e-65
Identities = 155/395 (39%), Positives = 236/395 (59%), Gaps = 34/395 (8%)
Query: 2 SLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYML 61
+L + PK+++ +GQEHLVG + + +++ YGPPG+GKTS+A IA
Sbjct: 4 NLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTT 63
Query: 62 ERPILLFNAT---DFKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDH 118
+ FNAT +L+++ + K + L V+ +DE HRL+KT+Q+FLLP++E
Sbjct: 64 KYAFRTFNATVDSKKRLQEISEEAK-FSGGL---VLLLDEIHRLDKTKQDFLLPLLESGL 119
Query: 119 ALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKK------QIEPG 172
+++GA+T++P +S++ AIRSR IFEL PL+ D+ AL+ ++ +++
Sbjct: 120 VIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQIALSNPERGFDFPIELDED 179
Query: 173 AKTYLLNNSAGDARALLNLLDLSAKIEDP--------ITLKTLQSLRPHSLNDGSYSDDT 224
A ++ ++ GD R+ N LDL A + P ITL +++ S D
Sbjct: 180 ALDFIATSTNGDLRSAFNSLDL-AVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDG 238
Query: 225 HYNLTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLA 284
HY++ SAL KS+RGSD +AS++Y ARLI G+ P +ARRL + A EDIG ANP A
Sbjct: 239 HYDVLSALQKSIRGSDVDASLHYTARLIEAGDLPS-LARRLTVIAYEDIGLANPEAQIHT 297
Query: 285 ASCLFAVKQIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHL-- 342
+ L A ++IG+PEARI+++ VI LA SPKSN+AY A+++AL ++ PIP+HL
Sbjct: 298 VTALDAAQKIGFPEARILIANVVIDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRD 357
Query: 343 --------LPNAKDYLYPHDYNG-YVKQDYLEKPL 368
L NA+DYLYPH+Y G +VKQDYL + +
Sbjct: 358 GHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKI 392
>ref|NP_359208.1| (NC_003098) Chromosome segregation helicase [Streptococcus
pneumoniae R6]
gb|AAL00419.1| (AE008528) Chromosome segregation helicase [Streptococcus
pneumoniae R6]
Length = 423
Score = 249 bits (635), Expect = 5e-65
Identities = 155/395 (39%), Positives = 236/395 (59%), Gaps = 34/395 (8%)
Query: 2 SLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYML 61
+L + PK+++ +GQEHLVG + + +++ YGPPG+GKTS+A IA
Sbjct: 4 NLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTT 63
Query: 62 ERPILLFNAT---DFKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDH 118
+ FNAT +L+++ + K + L V+ +DE HRL+KT+Q+FLLP++E
Sbjct: 64 KYAFRTFNATVDSKKRLQEISEEAK-FSGGL---VLLLDEIHRLDKTKQDFLLPLLESGL 119
Query: 119 ALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKK------QIEPG 172
+++GA+T++P +S++ AIRSR IFEL PL+ D+ AL+ ++ +++
Sbjct: 120 VIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQIALSNPERGFDFPIELDED 179
Query: 173 AKTYLLNNSAGDARALLNLLDLSAKIEDP--------ITLKTLQSLRPHSLNDGSYSDDT 224
A ++ ++ GD R+ N LDL A + P ITL +++ S D
Sbjct: 180 ALDFIATSTNGDLRSAFNSLDL-AVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDG 238
Query: 225 HYNLTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLA 284
HY++ SAL KS+RGSD +AS++Y ARLI G+ P +ARRL + A EDIG ANP A
Sbjct: 239 HYDVLSALQKSIRGSDVDASLHYAARLIEAGDLPS-LARRLTVIAYEDIGLANPEAQIHT 297
Query: 285 ASCLFAVKQIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHL-- 342
+ L A ++IG+PEARI+++ VI LA SPKSN+AY A+++AL ++ PIP+HL
Sbjct: 298 VTALDAAQKIGFPEARILIANVVIDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRD 357
Query: 343 --------LPNAKDYLYPHDYNG-YVKQDYLEKPL 368
L NA+DYLYPH+Y G +VKQDYL + +
Sbjct: 358 GHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKI 392
>ref|NP_608032.1| (NC_003485) conserved hypothetical protein [Streptococcus pyogenes
MGAS8232]
gb|AAL98531.1| (AE010109) conserved hypothetical protein [Streptococcus pyogenes
MGAS8232]
Length = 422
Score = 248 bits (632), Expect = 1e-64
Identities = 153/389 (39%), Positives = 231/389 (59%), Gaps = 32/389 (8%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERPIL 66
+ PK++ + +GQ+HLVG+ + + +++ YGPPG+GKTS+A IA
Sbjct: 9 MRPKTISEVIGQKHLVGEGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTRYAFR 68
Query: 67 LFNAT---DFKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILG 123
FNAT +L+++ + K + L V+ +DE HRL+KT+Q+FLLP++E +++G
Sbjct: 69 TFNATIDSKKRLQEIAEEAK-FSGGL---VLLLDEIHRLDKTKQDFLLPLLENGTIIMIG 124
Query: 124 ASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKK------QIEPGAKTYL 177
A+T++P +S++ AIRSR IFEL PL+ D+ A++ ++ I+ A ++
Sbjct: 125 ATTENPFFSVTPAIRSRVQIFELEPLSNEDIKTAIQLAISDKERGFPFLVTIDDEALDFI 184
Query: 178 LNNSAGDARALLNLLDLSAKIEDP-------ITLKTLQSLRPHSLNDGSYSDDTHYNLTS 230
+ + GD R+ N LDL+ P I+L+T+++ S + D HY++ S
Sbjct: 185 VTATNGDLRSAYNSLDLAVMSTSPNEDSSRHISLETMENSLQRSYITMDKNGDGHYDVLS 244
Query: 231 ALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFA 290
AL KS+RGSD NAS++Y ARL+ G+ P +ARRL I A EDIG ANP+A + L A
Sbjct: 245 ALQKSIRGSDVNASLHYAARLVEAGDLPS-LARRLTIIAYEDIGLANPDAQVHTVTALDA 303
Query: 291 VKQIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHL-------- 342
++IG+PEARI+++ VI LA SPKSN+AY A++ AL ++ PIP+HL
Sbjct: 304 AQRIGFPEARILIANVVIDLALSPKSNSAYLAMDAALADLRTSGNLPIPRHLRDGHYAGS 363
Query: 343 --LPNAKDYLYPHDY-NGYVKQDYLEKPL 368
L NAKDYLYPH Y +VKQ YL L
Sbjct: 364 KDLGNAKDYLYPHAYPEKWVKQQYLPDKL 392
>ref|NP_269956.1| (NC_002737) conserved hypothetical protein [Streptococcus pyogenes]
[Streptococcus pyogenes M1 GAS]
gb|AAK34677.1| (AE006622) conserved hypothetical protein [Streptococcus pyogenes
M1 GAS]
Length = 422
Score = 246 bits (627), Expect = 4e-64
Identities = 153/389 (39%), Positives = 230/389 (58%), Gaps = 32/389 (8%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERPIL 66
+ PK++ + +GQ+HLVG+ + + +++ YGPPG+GKTS+A IA
Sbjct: 9 MRPKTISEVIGQKHLVGEGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTRYAFR 68
Query: 67 LFNAT---DFKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILG 123
FNAT +L+++ + K + L V+ +DE HRL+KT+Q+FLLP++E +++G
Sbjct: 69 TFNATIDSKKRLQEIAEEAK-FSGGL---VLLLDEIHRLDKTKQDFLLPLLENGTIIMIG 124
Query: 124 ASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKK------QIEPGAKTYL 177
A+T++P +S++ AIRSR IFEL PL+ D+ A++ ++ I+ A ++
Sbjct: 125 ATTENPFFSVTPAIRSRVQIFELEPLSNEDIKTAIQLAISDKERGFPFLVTIDDEALDFI 184
Query: 178 LNNSAGDARALLNLLDLSAKIEDP-------ITLKTLQSLRPHSLNDGSYSDDTHYNLTS 230
+ + GD R+ N LDL+ P I+L+T+++ S + D HY++ S
Sbjct: 185 VTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQRSYITMDKNGDGHYDVLS 244
Query: 231 ALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFA 290
AL KS+RGSD NAS++Y ARL+ G+ P +ARRL I A EDIG ANP+A + L A
Sbjct: 245 ALQKSIRGSDVNASLHYAARLVEAGDLPS-LARRLTIIAYEDIGLANPDAQVHTVTALDA 303
Query: 291 VKQIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHL-------- 342
++IG+PEARI ++ VI LA SPKSN+AY A++ AL ++ PIP+HL
Sbjct: 304 AQRIGFPEARIPIANVVIDLALSPKSNSAYLAMDAALADLRTSGNLPIPRHLRDGHYAGS 363
Query: 343 --LPNAKDYLYPHDY-NGYVKQDYLEKPL 368
L NAKDYLYPH Y +VKQ YL L
Sbjct: 364 KDLGNAKDYLYPHAYPEKWVKQQYLPDKL 392
>ref|NP_372151.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_374740.1| (NC_002745) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB42719.1| (AP003134) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB57789.1| (AP003362) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
Length = 424
Score = 243 bits (620), Expect = 3e-63
Identities = 151/391 (38%), Positives = 225/391 (56%), Gaps = 27/391 (6%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLE 62
L S + PK++++ + Q+HLVG + + + +K FYGPPG+GKTS+A+ I+ +
Sbjct: 6 LASRMRPKNIDEIISQQHLVGPKGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQ 65
Query: 63 RPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALIL 122
NA +D++L ++ + + + ++ +DE HRL+K +Q+FLLP +E +++
Sbjct: 66 YKFRQLNAVTNTKKDMQLVVEEAKMSG-QVILLLDEIHRLDKAKQDFLLPHLENGKIVLI 124
Query: 123 GASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKA-------LTLLKKQIEPGAKT 175
GA+T +P ++++ AIRSR+ IFEL PLN D+ + +A L + +I+ A T
Sbjct: 125 GATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQALTRAIEDDENGLKTYQPKIDEDAMT 184
Query: 176 YLLNNSAGDARALLNLLDLSA----KIEDPITLKTLQSLRPHSLNDGSYSD---DTHYNL 228
Y S GD R+ LN L+L+ +D TLQ + SD D HY++
Sbjct: 185 YFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDMHYDV 244
Query: 229 TSALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCL 288
SA KS+RGSD NA+++YLARLI G+ P I RRL++ + EDIG A+PNA + +
Sbjct: 245 MSAFQKSIRGSDVNAALHYLARLIEAGDLPT-IVRRLLVISYEDIGLASPNAGQRTLAAI 303
Query: 289 FAVKQIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHL----LP 344
+ +++G PEARI LSQ VI L SPKSN+A AI+ AL ++ G + IP HL
Sbjct: 304 ESAERLGLPEARIPLSQAVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQ 363
Query: 345 NAKD------YLYPHDY-NGYVKQDYLEKPL 368
AKD Y YPH Y NGYV Q YL L
Sbjct: 364 GAKDLGRSIGYKYPHQYVNGYVSQQYLPDKL 394
>ref|NP_646394.1| (NC_003923) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
dbj|BAB95442.1| (AP004827) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
Length = 424
Score = 243 bits (619), Expect = 4e-63
Identities = 151/391 (38%), Positives = 225/391 (56%), Gaps = 27/391 (6%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLE 62
L S + PK++++ + Q+HLVG + + + +K FYGPPG+GKTS+A+ I+ +
Sbjct: 6 LASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQ 65
Query: 63 RPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALIL 122
NA +D++L ++ + + + ++ +DE HRL+K +Q+FLLP +E +++
Sbjct: 66 YKFRQLNAVTNTKKDMQLVVEEAKMSG-QVILLLDEIHRLDKAKQDFLLPHLENGKIVLI 124
Query: 123 GASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKA-------LTLLKKQIEPGAKT 175
GA+T +P ++++ AIRSR+ IFEL PLN D+ + +A L + +I+ A T
Sbjct: 125 GATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQALTRAIEDEENGLKTYQPKIDEDAMT 184
Query: 176 YLLNNSAGDARALLNLLDLSA----KIEDPITLKTLQSLRPHSLNDGSYSD---DTHYNL 228
Y S GD R+ LN L+L+ +D TLQ + SD D HY++
Sbjct: 185 YFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDMHYDV 244
Query: 229 TSALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCL 288
SA KS+RGSD NA+++YLARLI G+ P I RRL++ + EDIG A+PNA + +
Sbjct: 245 MSAFQKSIRGSDVNAALHYLARLIEAGDLPT-IVRRLLVISYEDIGLASPNAGQRTLAAI 303
Query: 289 FAVKQIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHL----LP 344
+ +++G PEARI LSQ VI L SPKSN+A AI+ AL ++ G + IP HL
Sbjct: 304 ESAERLGLPEARIPLSQAVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQ 363
Query: 345 NAKD------YLYPHDY-NGYVKQDYLEKPL 368
AKD Y YPH Y NGYV Q YL L
Sbjct: 364 GAKDLGRSIGYKYPHQYVNGYVSQQYLPDKL 394
>emb|CAA19102.1| (AL023591) hypothetical protein MLCB1259.27 [Mycobacterium leprae]
Length = 447
Score = 239 bits (611), Expect = 3e-62
Identities = 150/409 (36%), Positives = 232/409 (56%), Gaps = 25/409 (6%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERPIL 66
+ P SL++ +GQ HL+ +PL + ++ A +GPPG GKT+LA +I+
Sbjct: 31 MRPASLDELVGQGHLLAPGSPLRRLVEGSGVVSAILHGPPGCGKTTLAALISQATGHRFE 90
Query: 67 LFNATDFKLEDLRLKLKNYQNTLL---KPVVFIDETHRLNKTQQEFLLPIMEKDHALILG 123
+A ++D+R LK ++ LL + V+FIDE HR +KTQQ+ LL +E L++
Sbjct: 91 ALSALSAGVKDVRAVLKIARSALLSGKRTVLFIDEVHRFSKTQQDALLSAVENRVVLLVA 150
Query: 124 ASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKK-----QIEPGAKTYLL 178
A+T++P++S+ + SRS I +L PLN D+ + +A+ + + P A L+
Sbjct: 151 ATTENPSFSVVAPLLSRSLILQLRPLNADDIRAVVQRAVDDPRGLGGQIAVAPEAVDLLV 210
Query: 179 NNSAGDARALLNLLDLSAKIE---DPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKS 235
+AGDAR +L L+++A+ D +T+ T++ ++ D HY++ SA IKS
Sbjct: 211 RLAAGDARRVLTALEVAAEAVQTGDELTVATIEQSLDNAAVRYDRDGDQHYDIVSAFIKS 270
Query: 236 LRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFAVKQIG 295
+RGSD +A+++YLAR++ GE+P FIARRL+I ASEDIG A+ AL LA + V+ IG
Sbjct: 271 VRGSDVDAALHYLARMLIAGEDPRFIARRLLILASEDIGLADSTALPLAVAAAQTVQLIG 330
Query: 296 YPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHL----------LPN 345
PEA++ L+ I+LA +PKSN A+ A+D ++ G +P HL L N
Sbjct: 331 MPEAQLALAHATIHLATAPKSNAVMTALGSAIDDIKAGKAGLVPAHLRDGHYSGAAALGN 390
Query: 346 AKDYLYPH-DYNGYVKQDYLEKPL---DLVSSQGIGFEKTLLEWLDKIR 390
AK Y Y H D +G V Q Y L D G G E+ L+ LD++R
Sbjct: 391 AKGYKYSHDDPDGVVAQQYPPYELVEVDYYRPTGRGGERELVGRLDRLR 439
>ref|NP_301436.1| (NC_002677) conserved hypothetical protein [Mycobacterium leprae]
emb|CAC30018.1| (AL583918) conserved hypothetical protein [Mycobacterium leprae]
Length = 473
Score = 239 bits (611), Expect = 3e-62
Identities = 150/409 (36%), Positives = 232/409 (56%), Gaps = 25/409 (6%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERPIL 66
+ P SL++ +GQ HL+ +PL + ++ A +GPPG GKT+LA +I+
Sbjct: 57 MRPASLDELVGQGHLLAPGSPLRRLVEGSGVVSAILHGPPGCGKTTLAALISQATGHRFE 116
Query: 67 LFNATDFKLEDLRLKLKNYQNTLL---KPVVFIDETHRLNKTQQEFLLPIMEKDHALILG 123
+A ++D+R LK ++ LL + V+FIDE HR +KTQQ+ LL +E L++
Sbjct: 117 ALSALSAGVKDVRAVLKIARSALLSGKRTVLFIDEVHRFSKTQQDALLSAVENRVVLLVA 176
Query: 124 ASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKK-----QIEPGAKTYLL 178
A+T++P++S+ + SRS I +L PLN D+ + +A+ + + P A L+
Sbjct: 177 ATTENPSFSVVAPLLSRSLILQLRPLNADDIRAVVQRAVDDPRGLGGQIAVAPEAVDLLV 236
Query: 179 NNSAGDARALLNLLDLSAKIE---DPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKS 235
+AGDAR +L L+++A+ D +T+ T++ ++ D HY++ SA IKS
Sbjct: 237 RLAAGDARRVLTALEVAAEAVQTGDELTVATIEQSLDNAAVRYDRDGDQHYDIVSAFIKS 296
Query: 236 LRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFAVKQIG 295
+RGSD +A+++YLAR++ GE+P FIARRL+I ASEDIG A+ AL LA + V+ IG
Sbjct: 297 VRGSDVDAALHYLARMLIAGEDPRFIARRLLILASEDIGLADSTALPLAVAAAQTVQLIG 356
Query: 296 YPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHL----------LPN 345
PEA++ L+ I+LA +PKSN A+ A+D ++ G +P HL L N
Sbjct: 357 MPEAQLALAHATIHLATAPKSNAVMTALGSAIDDIKAGKAGLVPAHLRDGHYSGAAALGN 416
Query: 346 AKDYLYPH-DYNGYVKQDYLEKPL---DLVSSQGIGFEKTLLEWLDKIR 390
AK Y Y H D +G V Q Y L D G G E+ L+ LD++R
Sbjct: 417 AKGYKYSHDDPDGVVAQQYPPYELVEVDYYRPTGRGGERELVGRLDRLR 465
>ref|NP_390631.1| (NC_000964) similar to hypothetical proteins [Bacillus subtilis]
pir||D69981 conserved hypothetical protein yrvN - Bacillus subtilis
emb|CAB14695.1| (Z99117) similar to hypothetical proteins [Bacillus subtilis]
emb|CAB14712.1| (Z99118) similar to hypothetical proteins [Bacillus subtilis]
Length = 421
Score = 238 bits (608), Expect = 7e-62
Identities = 154/412 (37%), Positives = 227/412 (54%), Gaps = 31/412 (7%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERPIL 66
+ P +ED +GQ+HLV +D + + +Q+KH YGPPG+GKTS+A IA
Sbjct: 8 MRPTKIEDIIGQQHLVAEDKIIGRMVQAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFR 67
Query: 67 LFNATDFKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGAST 126
NA +D+ + + + + + ++ +DE HRL+K +Q+FLLP +E +++GA+T
Sbjct: 68 KLNAVINNKKDMEIVAQEAKMSG-QVILILDEVHRLDKGKQDFLLPYLENGMIILIGATT 126
Query: 127 QDPNYSLSHAIRSRSFIFELTPLN----KSDLDRLCA---KALTLLKKQIEPGAKTYLLN 179
+P ++++ AIRSR+ IFEL PL K L+R + L I+ A + +
Sbjct: 127 ANPYHAINPAIRSRTQIFELEPLTPELIKQALERALHDEHRGLGTYSVSIDDQAMEHFAH 186
Query: 180 NSAGDARALLNLLDL-------SAKIEDPITLKTLQSLRPHSLNDGSYSDDTHYNLTSAL 232
GD R+ LN L+L SA E ITL+T + D HY++ SA
Sbjct: 187 GCGGDVRSALNALELAVLSTKESADGEIHITLETAEECLQKKSFSHDKDGDAHYDVLSAF 246
Query: 233 IKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFAVK 292
KS+RGSD NA+++YLARLI G+ E IARRL++ A EDIG A+P A + + +
Sbjct: 247 QKSIRGSDANAALHYLARLIEAGDL-ESIARRLLVIAYEDIGLASPQAGPRVLNAIQTAE 305
Query: 293 QIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHL---------- 342
++G+PEARI L+ VI L SPKSN+A AI++AL ++ G + +PKHL
Sbjct: 306 RVGFPEARIPLANAVIELCLSPKSNSAILAIDEALADIRAGKIGDVPKHLKDAHYKGAQE 365
Query: 343 LPNAKDYLYPHDY-NGYVKQDYLEKPLD----LVSSQGIGFEKTLLEWLDKI 389
L DY YPH+Y NG+V+Q YL PL Q FE L + DK+
Sbjct: 366 LGRGIDYKYPHNYDNGWVEQQYLPDPLKNKQYYKPKQTGKFESALKQVYDKL 417
>ref|NP_266253.1| (NC_002662) chromosome segregation helicase [Lactococcus lactis
subsp. lactis]
gb|AAK04195.1|AE006248_3 (AE006248) chromosome segregation helicase [Lactococcus lactis
subsp. lactis]
Length = 419
Score = 234 bits (598), Expect = 1e-60
Identities = 153/415 (36%), Positives = 239/415 (56%), Gaps = 32/415 (7%)
Query: 2 SLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYML 61
+L + P+++++ +GQ+HLVGK + + ++++ YGPPG+GKTS+A IA +
Sbjct: 4 NLARRMRPRNIDEIVGQKHLVGKGKIIRRMVETQLLSSMILYGPPGIGKTSIASAIAGTM 63
Query: 62 ERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALI 121
FNAT + L+ ++ + + V+ +DE HRL+K +Q+FLLP++E ++
Sbjct: 64 NVAFRTFNATTDTKKRLQ-EIASEAEFSGQLVLLLDEIHRLDKPKQDFLLPLLENGQIIL 122
Query: 122 LGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQ--------IEPGA 173
+GA+T++P +S+ AIRSR IFEL PL DL+ A L+L K+ I+ A
Sbjct: 123 IGATTENPYFSVVPAIRSRVQIFELKPLEPEDLE--FAVNLSLQDKERGFDFDVTIDDDA 180
Query: 174 KTYLLNNSAGDARALLNLLDLS--AKIEDPITLKTLQSLRPHSLNDGSYSDDTHYNLTSA 231
+L++++ GD R+ N L+L+ + E +TL +++ D HY+L SA
Sbjct: 181 LYFLIHSTNGDLRSTFNALELAVLSSEEHHVTLDDMENSLQRKAATFDKDGDAHYDLLSA 240
Query: 232 LIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFAV 291
L KS+RGSD NAS++Y ARLI GG+ + +ARRL + A EDIG ANP+A S L A
Sbjct: 241 LQKSIRGSDVNASLHYAARLIEGGDL-QSLARRLTVMAYEDIGLANPDAALHTVSALSAA 299
Query: 292 KQIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHL--------- 342
+++G+PEARI L+ +I LA SPKSN AY A+++A+ + K +P HL
Sbjct: 300 EKLGFPEARIPLANIIIDLALSPKSNAAYLAMDEAIADLGKYGNLAVPPHLQDGHYAGAK 359
Query: 343 -LPNAKDYLYPHDY-NGYVKQDYLE---KPLDLVSSQGIG-FEKTL---LEWLDK 388
L + +Y Y H++ N +V Q YL K D +G +EK L EW+D+
Sbjct: 360 DLGRSVEYQYAHNFPNHWVNQQYLPDKIKNADYFRPDDMGRYEKALHSRKEWIDE 414
>ref|NP_348297.1| (NC_003030) Predicted ATPase related to the helicase subunit of the
Holliday junction resolvase [Clostridium acetobutylicum]
gb|AAK79637.1|AE007676_7 (AE007676) Predicted ATPase related to the helicase subunit of the
Holliday junction resolvase [Clostridium acetobutylicum]
Length = 421
Score = 233 bits (593), Expect = 4e-60
Identities = 140/395 (35%), Positives = 224/395 (56%), Gaps = 30/395 (7%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLE 62
L + P++ + GQ+H++G+ L + L+S P+ FYGPPG GKT++A IIA
Sbjct: 4 LADRIRPENFNEVFGQKHIIGEGKILDRILKSSLVPNMIFYGPPGTGKTTVANIIAKKTN 63
Query: 63 RPILLFNATDFKLEDLRLKLKNYQNTLLKP---VVFIDETHRLNKTQQEFLLPIMEKDHA 119
+ NAT ++D+R ++ + NTL+ ++++DE NK QQ+ LL ME
Sbjct: 64 KAFYKLNATTASVKDVR-EITDSTNTLMGRNGVLLYLDEIQNFNKKQQQSLLEFMENGSI 122
Query: 120 LILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIEP-------G 172
++ ++T++P + + +AI SRS IFE PL +L + +A+ L+K +++
Sbjct: 123 TLIASTTENPYFYVYNAILSRSTIFEFKPLESDELMKAVNRAVELIKDELKTTEIIITED 182
Query: 173 AKTYLLNNSAGDARALLNLLDLSAKIEDP-------ITLKTLQSLRPHSLNDGSYSDDTH 225
AK Y + S+GD R LN ++++ P I L+T++ ++ + D H
Sbjct: 183 AKKYAVGVSSGDVRKTLNSIEIAVYSTKPNEEGNIFIDLETMKECTQKNVLNFDKDGDNH 242
Query: 226 YNLTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAA 285
Y++ SA KS+RGSD +A++ YLA LI GG+ I RRL++ A+EDIG A P A+++
Sbjct: 243 YDILSAFQKSIRGSDADAAVLYLAMLIKGGDLKS-ICRRLLVIAAEDIGLAYPQAISIVK 301
Query: 286 SCLFAVKQIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHL--- 342
+C + ++G+PEARI L++ VI LA SPKSN+A A++ AL + ++ IP +L
Sbjct: 302 ACTDSALELGFPEARIPLAEAVILLATSPKSNSAITAVDSALRDLDTINVGSIPDYLRDG 361
Query: 343 -------LPNAKDYLYPHDY-NGYVKQDYLEKPLD 369
L +DY YPH Y N YVKQ YL L+
Sbjct: 362 HYEGAKKLGRMQDYKYPHSYENNYVKQKYLPSNLE 396
>ref|NP_600847.1| (NC_003450) COG2256:Uncharacterized ATPase related to the helicase
subunit of the Holliday junction resolvase
[Corynebacterium glutamicum]
dbj|BAB99026.1| (AP005279) Uncharacterized ATPase related to the helicase subunit
of the Holliday junction resolvase [Corynebacterium
glutamicum ATCC 13032]
Length = 459
Score = 231 bits (589), Expect = 1e-59
Identities = 147/413 (35%), Positives = 240/413 (57%), Gaps = 25/413 (6%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLE 62
L + + P++L++ +GQ+HL+G+ PL + ++ YGPPG GKT++A +I+
Sbjct: 40 LAARMRPRTLDEVVGQQHLLGEGRPLRRLIEGSGDASVILYGPPGTGKTTIASLISAAAG 99
Query: 63 RPILLFNATDFKLEDLRLKLKNYQNTLL---KPVVFIDETHRLNKTQQEFLLPIMEKDHA 119
+ +A ++++R ++ + L + V+FIDE HR +KTQQ+ LL +E
Sbjct: 100 DRFVAMSALSSGVKEVRAVIERARMDLQLGQRTVLFIDEVHRFSKTQQDALLSAVENRTV 159
Query: 120 LILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALT-----LLKKQIEPGAK 174
L++ A+T++P++S+ + SRS + +L L+ D+ + KAL + A
Sbjct: 160 LLVAATTENPSFSVVSPLLSRSLLLQLESLSDEDIKTVLNKALEDERGLAGRITATDEAV 219
Query: 175 TYLLNNSAGDARALLNLLDLSAK-IEDP--ITLKTLQSLRPHSLNDGSYSDDTHYNLTSA 231
L+ + GDAR L ++ +A+ +ED + + T+ + ++ D HY++ SA
Sbjct: 220 DQLVLLAGGDARRGLTYIEAAAEAVEDGGVLDIDTVMANVNRAVVRYDRDGDQHYDVVSA 279
Query: 232 LIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFAV 291
IKS+RGSD +A+++YLAR+I GE+P FIARRLV+ +SEDIG A+P+A+ +A + AV
Sbjct: 280 WIKSIRGSDVDAALHYLARMIDAGEDPRFIARRLVVHSSEDIGMADPSAMQVAIAAAQAV 339
Query: 292 KQIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHL--------- 342
+ IG PEARI L+Q I+LA +PKSN A++ AL VQ+G + +P HL
Sbjct: 340 QLIGMPEARINLAQATIHLALAPKSNAVIMAMDAALTDVQQGHIGTVPAHLRDGHYEGAK 399
Query: 343 -LPNAKDYLYPH-DYNGYVKQDYLEKPL-DLVSSQGI--GFEKTLLEWLDKIR 390
L NA Y YPH D G V+Q+YL + L D V + G EK + E++ ++R
Sbjct: 400 KLGNAVGYSYPHDDPRGVVRQEYLPENLRDRVYYEPTTHGGEKRIAEYIGRLR 452
>ref|NP_217075.1| (NC_000962) hypothetical protein Rv2559c [Mycobacterium
tuberculosis H37Rv]
ref|NP_337134.1| (NC_002755) ATPase, AAA family [Mycobacterium tuberculosis CDC1551]
sp|Q50739|YP59_MYCTU Hypothetical protein Rv2559c
pir||C70728 hypothetical protein Rv2559c - Mycobacterium tuberculosis (strain
H37RV)
emb|CAB01045.1| (Z77250) hypothetical protein Rv2559c [Mycobacterium tuberculosis
H37Rv]
gb|AAK46948.1| (AE007098) ATPase, AAA family [Mycobacterium tuberculosis CDC1551]
Length = 452
Score = 229 bits (585), Expect = 3e-59
Identities = 143/410 (34%), Positives = 228/410 (54%), Gaps = 26/410 (6%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERPIL 66
+ P SL++ +GQ+HL+ +PL + ++ YGPPG GKT+LA +I+ R
Sbjct: 35 MRPASLDEVVGQDHLLAPGSPLRRLVEGSGVASVILYGPPGSGKTTLAALISQATGRRFE 94
Query: 67 LFNATDFKLEDLRLKLKNYQNTLL---KPVVFIDETHRLNKTQQEFLLPIMEKDHALILG 123
+A ++++R ++N + LL + V+FIDE HR +KTQQ+ LL +E L++
Sbjct: 95 ALSALSAGVKEVRAVIENSRKALLHGEQTVLFIDEVHRFSKTQQDALLSAVEHRVVLLVA 154
Query: 124 ASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKK-----QIEPGAKTYLL 178
A+T++P++S+ + SRS I +L PL D + +A+ + + P A L+
Sbjct: 155 ATTENPSFSVVAPLLSRSLILQLRPLTAEDTRAVVQRAIDDPRGLGRAVAVAPEAVDLLV 214
Query: 179 NNSAGDARALLNLLDLSAKIEDP----ITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIK 234
+AGDAR L L+++A+ ++++T++ + D HY++ SA IK
Sbjct: 215 QLAAGDARRALTALEVAAEAAQAAGELVSVQTIERSVDKAAVRYDRDGDQHYDVVSAFIK 274
Query: 235 SLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFAVKQI 294
S+RGSD +A+++YLAR++ GE+P FIARRL+I ASEDIG A P+AL +A + V I
Sbjct: 275 SVRGSDVDAALHYLARMLVAGEDPRFIARRLMILASEDIGMAGPSALQVAVAAAQTVALI 334
Query: 295 GYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHL----------LP 344
G PEA++ L+ I+LA +PKSN A+ A++ ++ G +P HL L
Sbjct: 335 GMPEAQLTLAHATIHLATAPKSNAVTTALAAAMNDIKAGKAGLVPAHLRDGHYSGAAALG 394
Query: 345 NAKDYLYPH-DYNGYVKQDYLEKPL---DLVSSQGIGFEKTLLEWLDKIR 390
NA+ Y Y H D +G V Q Y L D G G E+ + LD++R
Sbjct: 395 NAQGYKYSHDDPDGVVAQQYPPDELVDVDYYRPTGRGGEREIAGRLDRLR 444
>ref|NP_346967.1| (NC_003030) ATPase related to the helicase subunit of Holliday
junction resolvase [Clostridium acetobutylicum]
gb|AAK78307.1|AE007547_4 (AE007547) ATPase related to the helicase subunit of Holliday
junction resolvase [Clostridium acetobutylicum]
Length = 443
Score = 229 bits (583), Expect = 5e-59
Identities = 139/382 (36%), Positives = 218/382 (56%), Gaps = 25/382 (6%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLE 62
L + P++L D++GQEH++ K L L+ +GPPGVGKT+LA IIA +
Sbjct: 17 LAGRMRPRNLSDYIGQEHILEKGKALRNMLEKDSITSMILWGPPGVGKTTLAMIIASTTK 76
Query: 63 RPILLFNATDF---KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHA 119
+ F+A +++D+ +K + + ++ ++FIDE HR NK+QQ+ LP +EK
Sbjct: 77 CNFVEFSAATSGIKEIKDIMIKAEKDRLFGIRTLLFIDEIHRFNKSQQDTFLPHVEKGDI 136
Query: 120 LILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKK------QIEPGA 173
+++GA+T++P++ ++ A+ SR +F L PL+ +D+ +L ALT + QI
Sbjct: 137 ILIGATTENPSFEVNSALLSRCRVFVLKPLSNNDIVKLLKNALTDTRGFKNKNIQISEDL 196
Query: 174 KTYLLNNSAGDARALLNLLD---LSAKIEDPITLKTLQSLRPHSLNDGSYSD---DTHYN 227
T + S GDAR LN+L+ LS+K+E + L N D + HYN
Sbjct: 197 LTLIAVYSNGDARTALNVLEMAVLSSKLEHGVVTINKGILEDCMQNKALIYDKNGEEHYN 256
Query: 228 LTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASC 287
L SAL KS+R SD +A+IY+LAR++ GGE+P +IARRL+ F+SEDIG A+ NALN+ +
Sbjct: 257 LISALHKSMRNSDVDAAIYWLARMLEGGEDPLYIARRLIRFSSEDIGVADTNALNVTVNV 316
Query: 288 LFAVKQIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHL----- 342
+ IG PE + L++ V+YL+ +PKSN+ Y A +A ++ +P HL
Sbjct: 317 YNSCHYIGMPECSVNLTEAVVYLSLAPKSNSIYMAYEKAKKDAKETLASGVPLHLRNAPT 376
Query: 343 -----LPNAKDYLYPHDYNGYV 359
L +K Y Y HD++ V
Sbjct: 377 KLMSDLGYSKGYKYAHDFDNKV 398
>ref|NP_658428.1| (NC_003995) AAA, ATPase family associated with various cellular
activities (AAA) [Bacillus anthracis A2012] [Bacillus
anthracis str. A2012]
Length = 428
Score = 229 bits (583), Expect = 5e-59
Identities = 148/388 (38%), Positives = 218/388 (56%), Gaps = 29/388 (7%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLE 62
L + P ++++ +GQ+HLVG+ L++ +Q+ HF YGPPG GKTS+A IA
Sbjct: 5 LAHRMRPTNIQEVIGQQHLVGEGKILWRMVQANHFQSMILYGPPGTGKTSIASAIAGSTG 64
Query: 63 RPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALIL 122
P L NA +D+ + ++ + V+ +DE HRL+K +Q+FLLP +E ++
Sbjct: 65 TPFRLLNAVTHNKKDMEVVVQEAKMHR-HLVLILDEVHRLDKAKQDFLLPHLESGLLTLI 123
Query: 123 GASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKK-------QIEPGAKT 175
GA+T +P ++++ AIRSR IFEL L + DL +AL +K + P A
Sbjct: 124 GATTSNPFHAINSAIRSRCQIFELHALTEEDLLIGLKRALEDKEKGLGEYDVTVTPEALH 183
Query: 176 YLLNNSAGDARALLNLLDL----SAKIEDPITLKTLQSLRPHSLNDGSY----SDDTHYN 227
+ N S GD R+ N L+L S +D TL+ + L S+ D HY+
Sbjct: 184 HFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLE-IAEECLQKKSFVHDKGGDAHYD 242
Query: 228 LTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASC 287
+ SA KS+RGSD NA+++YLARLI G+ + I RRL+I A EDIG A+P A +
Sbjct: 243 VLSAFQKSVRGSDVNAALHYLARLIEAGDL-QSIGRRLLIMAYEDIGLASPQAGPRTLAA 301
Query: 288 LFAVKQIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHL----- 342
+ + +++G+PEARI L+ VI L SPKSN+AY+A++ AL ++ G IP HL
Sbjct: 302 IESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHDLRNGQTGDIPSHLKDSHY 361
Query: 343 -----LPNAKDYLYPHDY-NGYVKQDYL 364
L YLYPHD NG+V+Q YL
Sbjct: 362 KGAEALGRGIGYLYPHDQPNGWVQQQYL 389
>ref|NP_470885.1| (NC_003212) similar to unknown protein [Listeria innocua]
emb|CAC96780.1| (AL596169) similar to unknown protein [Listeria innocua]
Length = 427
Score = 228 bits (582), Expect = 7e-59
Identities = 139/383 (36%), Positives = 215/383 (55%), Gaps = 27/383 (7%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERPIL 66
+ PK+L++ +GQ HLVGKD +++ +++K YGPPG+GKTS+A IA +
Sbjct: 10 MRPKALDEIVGQTHLVGKDKIIYRMVKAKQLSSMILYGPPGIGKTSIASAIAGSTKYAFR 69
Query: 67 LFNATDFKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGAST 126
NA +D+ + + + ++ +DE HRL+K +Q+FLLP++E +++GA+T
Sbjct: 70 TLNAVTNNKKDMEVVAAEAKMSGTV-ILLLDEVHRLDKAKQDFLLPLLESGAIILIGATT 128
Query: 127 QDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKK-------QIEPGAKTYLLN 179
+P +++ AIRSR+ IFEL PL D+ +AL ++ +I+ AK +
Sbjct: 129 SNPYIAINPAIRSRTQIFELKPLTVEDIMITMDRALLDKERGLGNYEVEIDEFAKKHFAT 188
Query: 180 NSAGDARALLNLLDLSAKIEDP-------ITLKTLQSLRPHSLNDGSYSDDTHYNLTSAL 232
S GD R+ LN L+L+ +P ITL + D HY++ SA
Sbjct: 189 ASNGDVRSALNALELAVISSEPNEDGIIHITLDVAEECLQKKSLAHDKDGDAHYDVLSAF 248
Query: 233 IKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFAVK 292
KS+RGSD NA+++Y+ RLI G+ I+RR+++ A EDIG ANP A + + +
Sbjct: 249 QKSVRGSDVNAALHYMGRLIEAGDLVS-ISRRMLVMAYEDIGLANPQAGAHTLAAIQTAE 307
Query: 293 QIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHL---------- 342
++G+PEARI L+ VI L SPKSN+A AI+ AL +++G+ +P HL
Sbjct: 308 KVGFPEARIPLANAVIELCLSPKSNSAIMAIDAALADIRQGNSGEVPDHLRDGHYSGAKK 367
Query: 343 LPNAKDYLYPHDY-NGYVKQDYL 364
L A DY YPH+Y N +V Q YL
Sbjct: 368 LGRAMDYKYPHNYDNAWVDQQYL 390
>ref|NP_625786.1| (NC_003888) conserved ATP/GTP binding protein [Streptomyces
coelicolor A3(2)]
emb|CAB93386.1| (AL357523) conserved ATP/GTP binding protein [Streptomyces
coelicolor A3(2)]
Length = 451
Score = 228 bits (580), Expect = 1e-58
Identities = 144/387 (37%), Positives = 218/387 (56%), Gaps = 30/387 (7%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHA-----FFYGPPGVGKTSLAQIIAYML 61
+ P++L++ +GQ+HL+ +PL + + A +GPPG GKT+LA +++
Sbjct: 27 MRPRTLDEVVGQQHLLKPGSPLRRLVGEGASGPAGPSSVILWGPPGTGKTTLAYVVSKAT 86
Query: 62 ERPILLFNATDFKLEDLRLKLKNYQNTL----LKPVVFIDETHRLNKTQQEFLLPIMEKD 117
+ + +A ++++R + + + + V+F+DE HR +K QQ+ LLP +E
Sbjct: 87 NKRFVELSAITAGVKEVRAVIDGARRAVGGYGKETVLFLDEIHRFSKAQQDSLLPAVENR 146
Query: 118 HALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTL---LKKQIE-PG- 172
++ A+T++P +S+ + SRS + L PL D+ L +ALT LK + PG
Sbjct: 147 WVTLIAATTENPYFSVISPLLSRSLLLTLEPLTDDDVRDLLRRALTDERGLKGAVTLPGD 206
Query: 173 AKTYLLNNSAGDARALLNLLDLSA-----KIEDPITLKTLQSLRPHSLNDGSYSDDTHYN 227
+ +LL + GDAR L L+ +A K E + L TL+ + D HY+
Sbjct: 207 TEEHLLRIAGGDARRALTALEAAAGAALDKGEAEVGLTTLEETVDRAAVKYDRDGDQHYD 266
Query: 228 LTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASC 287
+ SALIKS+RGSD +A+++YLAR++ GE+P FIARRL+I ASEDIG A+PNAL +A +
Sbjct: 267 VASALIKSIRGSDVDAALHYLARMVEAGEDPRFIARRLMISASEDIGLADPNALQIAVAA 326
Query: 288 LFAVKQIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHL----- 342
AV IG+PEA + LS I LA +PKSN A AI ALD V+KG P+P HL
Sbjct: 327 AQAVAMIGFPEAALTLSHATIALALAPKSNAATTAIGAALDDVRKGHTGPVPAHLRDSHY 386
Query: 343 -----LPNAKDYLYPHDY-NGYVKQDY 363
L + + Y+YPHD G Q Y
Sbjct: 387 KGAGKLGHGQGYVYPHDLPEGIAAQQY 413
>ref|NP_284161.1| (NC_003116) hypothetical protein NMA1433 [Neisseria meningitidis
Z2491]
pir||D81912 hypothetical protein NMA1433 [imported] - Neisseria meningitidis
(group A strain Z2491)
emb|CAB84670.1| (AL162755) hypothetical protein NMA1433 [Neisseria meningitidis
Z2491]
Length = 436
Score = 226 bits (577), Expect = 3e-58
Identities = 142/393 (36%), Positives = 215/393 (54%), Gaps = 29/393 (7%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLE 62
L L P +L+D +GQEHL+G+ PL A++ +GPPGVGKT+LA+I+A
Sbjct: 13 LAERLRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHSMLLWGPPGVGKTTLARILAQSFN 72
Query: 63 RPILLFNATDFKLEDLRLKLKNYQNTLLK---PVVFIDETHRLNKTQQEFLLPIMEKDHA 119
L +A ++D+R + + L + ++F+DE HR NK QQ+ LP +E
Sbjct: 73 AQFLPVSAVFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPHVESGLL 132
Query: 120 LILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQ---IEPGAKTY 176
+GA+T++P++ ++ A+ SR+ ++ L PL+ DL +L AK L L + Q IE A+
Sbjct: 133 TFIGATTENPSFEVNPALLSRAQVYVLQPLSSDDLKKLIAKVLALPEYQEFTIETDAQKL 192
Query: 177 LLNNSAGDARALLNLLDLSAKIEDPITLKTLQSLRPHSLNDG--------SYSDDTHYNL 228
L+N GDAR LLNLL+ + D LK L + L D ++ YN
Sbjct: 193 LVNTVDGDARRLLNLLEQLLRAADTRRLKNLTA---EFLADSLGAQIRRFDKGGESFYNQ 249
Query: 229 TSALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCL 288
SAL KS+RGS NA++Y+ R++ GG +P ++ARR+V A EDIG A+P AL +A
Sbjct: 250 ISALHKSVRGSHPNAALYWFCRMLDGGTDPRYLARRIVRIAWEDIGLADPRALQIANDAA 309
Query: 289 FAVKQIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHL------ 342
+++G PE + L+Q V+YLA + KSN Y+A NQ V++ + +P HL
Sbjct: 310 ATFERLGSPEGELALAQAVLYLAAAAKSNAGYKAYNQMRHFVKENASDEVPVHLRNAPTK 369
Query: 343 ----LPNAKDYLYPHDY-NGYVK-QDYLEKPLD 369
L ++Y Y HD N Y + Y+ LD
Sbjct: 370 LMKELGYGREYRYAHDEPNAYAAGESYMPDGLD 402
>ref|NP_242123.1| (NC_002570) BH1257~unknown conserved protein [Bacillus halodurans]
dbj|BAB04976.1| (AP001511) BH1257~unknown conserved protein [Bacillus halodurans]
Length = 428
Score = 226 bits (577), Expect = 3e-58
Identities = 142/389 (36%), Positives = 218/389 (55%), Gaps = 31/389 (7%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERPIL 66
+ P ++++ +GQ+HLVG+ + + + + YGPPGVGKTS+AQ IA +
Sbjct: 10 MRPSNIDEVIGQQHLVGEGKIIRRMVDAGQLSSMILYGPPGVGKTSIAQAIAGSTDTHYK 69
Query: 67 LFNATDFKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGAST 126
L NA +D+ + ++ + + + ++ +DE HRL+K +Q+FLLP +EK +++GA+T
Sbjct: 70 LLNAVVNNKKDMEIVVEEAKMSG-QLILILDEVHRLDKGKQDFLLPHLEKGLLILIGATT 128
Query: 127 QDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIEPGAKTYLLNNSA---- 182
+P +S++ AIRSR IFELTPL ++ +ALT K G + ++++ A
Sbjct: 129 ANPFHSINPAIRSRCQIFELTPLTTDEIKVALTRALT--DKTHGLGEEPVVISDEALAHF 186
Query: 183 -----GDARALLNLLDLSAKIEDP-------ITLKTLQSLRPHSLNDGSYSDDTHYNLTS 230
GD R+ LN L+L+ + P ITL + D HY++ S
Sbjct: 187 AFACGGDVRSALNGLELAVRSTQPNVKGEKEITLSVAEECIQRKSFHHDKDGDAHYDVLS 246
Query: 231 ALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFA 290
A KS+RGSD NA+++YLARLI G+ I RRL++ A EDIG ANP A + + A
Sbjct: 247 AFQKSIRGSDVNAALHYLARLIEAGDLVS-IGRRLLVIAYEDIGLANPQAGPRTLAAIEA 305
Query: 291 VKQIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHL-------- 342
+++G+PE RI L+ V+ L SPKSN+AY A++ A+ ++KG + +P HL
Sbjct: 306 AERLGFPEGRIPLANAVVELCLSPKSNSAYVALDAAIADIRKGHVGSVPAHLKDAHYKGA 365
Query: 343 --LPNAKDYLYPHDY-NGYVKQDYLEKPL 368
L Y YPHDY G+VKQ YL L
Sbjct: 366 EQLGRGIGYKYPHDYERGWVKQQYLPDSL 394
>ref|NP_274280.1| (NC_003112) conserved hypothetical protein [Neisseria meningitidis
MC58]
pir||E81103 conserved hypothetical protein NMB1258 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF41636.1| (AE002474) conserved hypothetical protein [Neisseria meningitidis
MC58]
Length = 436
Score = 226 bits (575), Expect = 5e-58
Identities = 141/393 (35%), Positives = 215/393 (53%), Gaps = 29/393 (7%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLE 62
L L P +L+D +GQEHL+G+ PL A++ +GPPGVGKT+LA+I+A
Sbjct: 13 LAERLRPHTLDDVVGQEHLIGEGKPLRVAVEGGKPHSMLLWGPPGVGKTTLARILAQSFN 72
Query: 63 RPILLFNATDFKLEDLRLKLKNYQNTLLK---PVVFIDETHRLNKTQQEFLLPIMEKDHA 119
L +A ++D+R + + L + ++F+DE HR NK QQ+ LP +E
Sbjct: 73 AQFLPVSAVFSGVKDIREAIDKAEIALQQGRATILFVDEVHRFNKAQQDAFLPHVESGLL 132
Query: 120 LILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQ---IEPGAKTY 176
+GA+T++P++ ++ A+ SR+ ++ L PL+ DL +L AK L L + Q IE A+
Sbjct: 133 TFIGATTENPSFEVNPALLSRAQVYVLQPLSSDDLKKLIAKVLALPEYQEFTIETDAQKL 192
Query: 177 LLNNSAGDARALLNLLDLSAKIEDPITLKTLQSLRPHSLNDG--------SYSDDTHYNL 228
L+N + GDAR LLNLL+ + D LK L + L D ++ YN
Sbjct: 193 LVNTADGDARRLLNLLEQLLRAADTRRLKNLTA---EFLADSLGAQIRRFDKGGESFYNQ 249
Query: 229 TSALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCL 288
SAL KS+RGS NA++Y+ R++ GG +P ++ARR+V A EDIG A+P A +A
Sbjct: 250 ISALHKSVRGSHPNAALYWFCRMLDGGTDPRYLARRIVRIAWEDIGLADPRAFQIANDAA 309
Query: 289 FAVKQIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHL------ 342
+++G PE + L+Q V+YLA + KSN Y+A NQ V++ + +P HL
Sbjct: 310 ATFERLGSPEGELALAQAVLYLAAAAKSNAGYKAYNQMRHFVKENASDEVPVHLRNAPTK 369
Query: 343 ----LPNAKDYLYPHDY-NGY-VKQDYLEKPLD 369
L ++Y Y HD N Y + Y+ LD
Sbjct: 370 LMKELGYGREYRYAHDEPNAYSAGESYMPDGLD 402
>ref|NP_173839.1| (NM_102275) hypothetical protein [Arabidopsis thaliana]
pir||T00660 hypothetical protein F3I6.23 - Arabidopsis thaliana
gb|AAC00592.1| (AC002396) Hypothetical protein [Arabidopsis thaliana]
Length = 525
Score = 225 bits (574), Expect = 6e-58
Identities = 141/400 (35%), Positives = 220/400 (54%), Gaps = 34/400 (8%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLE 62
L+ + P++L+D +GQ+HL+ + L A++S P F+GPPG GKTS+A+ + +
Sbjct: 103 LSERMRPRTLDDVVGQDHLLSPSSLLRSAVESNRLPSIVFWGPPGTGKTSIAKSLINSSK 162
Query: 63 RPILL----FNATDFKLEDLRLKLKNYQNTLL----KPVVFIDETHRLNKTQQEFLLPIM 114
P L +A ++D+R +++ + L + V+F+DE HR NK+QQ+ LP++
Sbjct: 163 DPSLYRFVSLSAVTSGVKDVRDAVESAKRLNLEGRKRTVLFMDEVHRFNKSQQDTFLPVI 222
Query: 115 EKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKK------Q 168
E L +GA+T++P++ L + SR + L PL + ++ L +A+ ++ +
Sbjct: 223 EDGSILFIGATTENPSFHLITPLLSRCRVLTLNPLKPNHVETLLRRAVDDSERGLPNSVE 282
Query: 169 IEPGAKTYLLNNSAGDARALLNLLDLSAKI-------EDPITLKTLQSLRPHSLNDGSYS 221
++ +L NN GDAR LN L++SA + + +++ + +
Sbjct: 283 VDDSVIEFLANNCDGDARVALNALEISATMATTRAGTDAVVSIDDAKEALQCKHLAYDKA 342
Query: 222 DDTHYNLTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNAL 281
+ HYNL SAL KS+RG D NA+IY+LAR++ GGE P +IARRL+ FASEDIG A+P+AL
Sbjct: 343 GEQHYNLISALHKSMRGGDANAAIYWLARMLEGGEEPLYIARRLIRFASEDIGLADPSAL 402
Query: 282 NLAASCLFAVKQIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQK--GSLYPIP 339
A +C A +G PE +IL+QC YLA +PKS YRAI A V+ G +P
Sbjct: 403 TQAVACYQASHFLGMPECNVILAQCTAYLALAPKSIAVYRAIGAAQKVVKDSVGQNEGVP 462
Query: 340 KHL----------LPNAKDYLY-PHDYNGYVKQDYLEKPL 368
HL L K+Y+Y P D + Q YL L
Sbjct: 463 LHLRNAPTKLMKELGYGKEYIYPPSDPSSAAGQTYLPPSL 502
>ref|NP_295621.1| (NC_001263) conserved hypothetical protein [Deinococcus
radiodurans]
pir||C75339 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF11452.1|AE002029_1 (AE002029) conserved hypothetical protein [Deinococcus radiodurans]
Length = 434
Score = 224 bits (570), Expect = 2e-57
Identities = 140/402 (34%), Positives = 223/402 (54%), Gaps = 20/402 (4%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLE 62
L L P+++ + GQ HL+G PL + LQS +GPPGVGKT+LA+++A +
Sbjct: 10 LAERLRPRTVAEVAGQSHLLGAGKPLTRVLQSGRLGSLILWGPPGVGKTTLARLLAGEVG 69
Query: 63 RPILLFNATDFKLEDLR---LKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHA 119
+ +A ++D+R + + Q + V+F+DE HR NK QQ+ LLP +E
Sbjct: 70 AHFIALSAVSAGVKDVRDAVAEAEREQARGRRTVLFLDEIHRFNKAQQDALLPHVESGLL 129
Query: 120 LILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALT----LLKKQIEPGAKT 175
++GA+T++P++ ++ A+RSR+ L L+ D+ L +AL+ L + E A
Sbjct: 130 TLIGATTENPSFEVNPALRSRARTLVLEALSPEDVLALLRRALSDERGLPGVEAEDSALE 189
Query: 176 YLLNNSAGDARALLNLLDLSAKIEDPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKS 235
L + GDAR L+ L+++A + +P+T + + L + + YNL SAL KS
Sbjct: 190 LLARLAEGDARRALSTLEVAATLANPVTEEAVTEAFGRHLPAMDKNGEDFYNLISALHKS 249
Query: 236 LRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFAVKQIG 295
+R S +A++Y+LAR++ GG +P ++ARR+V ASEDIG A+P AL L + +++ +G
Sbjct: 250 VRASHPDAALYWLARMLQGGADPHYVARRIVRMASEDIGLADPQALRLTIAARDSMEFLG 309
Query: 296 YPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHL------LPNAKDY 349
PE + L+Q V+YLA +PKSN+ Y A + + VQ+G P+P HL L + Y
Sbjct: 310 SPEGDLALAQAVVYLALAPKSNSVYVAWKKTVRAVQEGESLPVPLHLRNAPTALMKGQGY 369
Query: 350 -----LYPHDYNGYVKQDYLEK--PLDLVSSQGIGFEKTLLE 384
Y D G +Q+YL LDL G G+E + E
Sbjct: 370 GRGYAYYFDDPAGSFEQNYLPDGVQLDLYQPTGEGWEARMTE 411
>ref|NP_465039.1| (NC_003210) similar to unknown protein [Listeria monocytogenes
EGD-e]
emb|CAC99592.1| (AL591979) similar to unknown protein [Listeria monocytogenes]
Length = 425
Score = 223 bits (569), Expect = 2e-57
Identities = 138/383 (36%), Positives = 214/383 (55%), Gaps = 27/383 (7%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERPIL 66
+ PK+L++ +GQ HLVGKD + + +++K YGPPG+GKTS+A IA +
Sbjct: 10 MRPKALDEIVGQTHLVGKDKIINRMVKAKQLSSMILYGPPGIGKTSIASAIAGSTKYAFR 69
Query: 67 LFNATDFKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGAST 126
NA +D+ + + + ++ +DE HRL+K +Q+FLLP++E +++GA+T
Sbjct: 70 TLNAVTNNKKDMEVVAAEAKMSGTV-ILLLDEVHRLDKAKQDFLLPLLESGAIILIGATT 128
Query: 127 QDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKK-------QIEPGAKTYLLN 179
+P +++ AIRSR+ IFEL PL D+ +AL+ ++ +I+ AK +
Sbjct: 129 SNPYIAINPAIRSRTQIFELKPLTIEDIMITMDRALSDKERGLGNYDVEIDEVAKKHFAT 188
Query: 180 NSAGDARALLNLLDLSAKIEDP-------ITLKTLQSLRPHSLNDGSYSDDTHYNLTSAL 232
S GD R+ LN L+L+ +P ITL + D HY++ SA
Sbjct: 189 ASNGDVRSALNALELAVISSEPNEDGVIHITLDVAEECLQKKSLAHDKDGDAHYDVLSAF 248
Query: 233 IKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFAVK 292
KS+RGSD NA+++Y+ RLI G+ I+RR+++ A EDIG A+P A + + +
Sbjct: 249 QKSVRGSDVNAALHYMGRLIEAGDLVS-ISRRMLVMAYEDIGLASPQAGAHTLAAIQTAE 307
Query: 293 QIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHL---------- 342
++G+PEARI L+ VI L SPKSN+A AI+ AL +++G +P HL
Sbjct: 308 KVGFPEARIPLANAVIELCLSPKSNSAIMAIDAALADIRQGKSGEVPDHLRDGHYSVAEK 367
Query: 343 LPNAKDYLYPHDY-NGYVKQDYL 364
L A DY YPH+Y N +V Q YL
Sbjct: 368 LGRAIDYKYPHNYDNAWVDQQYL 390
>ref|NP_014181.1| (NC_001146) Maintenance of Genome Stability 1; Mgs1p [Saccharomyces
cerevisiae]
sp|P40151|YNV8_YEAST HYPOTHETICAL 66.5 KD PROTEIN IN ALG9-RAP1 INTERGENIC REGION
pir||S63176 probable membrane protein YNL218w - yeast (Saccharomyces
cerevisiae)
emb|CAA96121.1| (Z71494) ORF YNL218w [Saccharomyces cerevisiae]
Length = 587
Score = 223 bits (567), Expect = 4e-57
Identities = 148/427 (34%), Positives = 233/427 (53%), Gaps = 67/427 (15%)
Query: 1 MSLTSLLNPKSLEDFLGQEHLVGKD-APLFKALQSKHFPHAFFYGPPGVGKTSLAQIIA- 58
+ L+ L PK L D++GQ+H++ +D LFK ++ P +GPPGVGKTSLA+++
Sbjct: 133 LPLSEKLRPKELRDYVGQQHILSQDNGTLFKYIKQGTIPSMILWGPPGVGKTSLARLLTK 192
Query: 59 ---------------YMLERPILLFNATDFKLEDLR----LKLKNYQNTLLKPVVFIDET 99
+M+E +AT ++LR K YQ T + V+FIDE
Sbjct: 193 TATTSSNESNVGSRYFMIET-----SATKANTQELRGIFEKSKKEYQLTKRRTVLFIDEI 247
Query: 100 HRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCA 159
HR NK QQ+ LLP +E +++GA+T++P++ L++A+ SR IF L LN ++L + +
Sbjct: 248 HRFNKVQQDLLLPHVENGDIILIGATTENPSFQLNNALISRCLIFVLEKLNVNELCIVLS 307
Query: 160 KALTLLKK------------QIEPGAKTYLLNNSAGDARALLNLLDL-------SAKIED 200
+ + LL K ++ Y+++ S GD R LN+L++ E+
Sbjct: 308 RGIALLNKCRKQVWNIENPLKLSRSILEYVVDLSVGDTRRALNMLEMIEVSTRERKADEE 367
Query: 201 PITLKTLQSLRPHSLNDG--SYSD---DTHYNLTSALIKSLRGSDENASIYYLARLIAGG 255
+++ ++ + ++ ++G +Y D D HY+ SA KS+RG DENAS+YYLAR++ GG
Sbjct: 368 ELSIDDVRDIIKNNSSNGLNTYYDPKGDNHYDTISAFHKSIRGGDENASLYYLARMLQGG 427
Query: 256 ENPEFIARRLVIFASEDIGNANPNALNLAASCLFAVKQIGYPEARIILSQCVIYLACSPK 315
E+P ++ARR++ ASEDIG + + L LA + AV ++G PEA + L+QC + LA +PK
Sbjct: 428 EDPLYVARRMIRIASEDIGLRDSSLLPLAVAAHDAVMKVGLPEADLALAQCCVALARAPK 487
Query: 316 SNTAYRAINQALDCVQKGSLY-----PIPKHL----------LPNAKDYLYPHDY-NGYV 359
S YRA + L + ++Y IP H+ L K Y Y DY G V
Sbjct: 488 SVELYRAWKK-LRAMMSENMYSLASSEIPMHIRNAPTKLMEELGYHKGYKYNPDYIEGKV 546
Query: 360 KQDYLEK 366
+QDY K
Sbjct: 547 QQDYFPK 553
>emb|CAA55489.1| (X78898) SRC strictly conserved sequence [Saccharomyces cerevisiae]
emb|CAA96120.1| (Z71493) ORF YNL218w [Saccharomyces cerevisiae]
Length = 472
Score = 223 bits (567), Expect = 4e-57
Identities = 148/427 (34%), Positives = 233/427 (53%), Gaps = 67/427 (15%)
Query: 1 MSLTSLLNPKSLEDFLGQEHLVGKD-APLFKALQSKHFPHAFFYGPPGVGKTSLAQIIA- 58
+ L+ L PK L D++GQ+H++ +D LFK ++ P +GPPGVGKTSLA+++
Sbjct: 18 LPLSEKLRPKELRDYVGQQHILSQDNGTLFKYIKQGTIPSMILWGPPGVGKTSLARLLTK 77
Query: 59 ---------------YMLERPILLFNATDFKLEDLR----LKLKNYQNTLLKPVVFIDET 99
+M+E +AT ++LR K YQ T + V+FIDE
Sbjct: 78 TATTSSNESNVGSRYFMIET-----SATKANTQELRGIFEKSKKEYQLTKRRTVLFIDEI 132
Query: 100 HRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCA 159
HR NK QQ+ LLP +E +++GA+T++P++ L++A+ SR IF L LN ++L + +
Sbjct: 133 HRFNKVQQDLLLPHVENGDIILIGATTENPSFQLNNALISRCLIFVLEKLNVNELCIVLS 192
Query: 160 KALTLLKK------------QIEPGAKTYLLNNSAGDARALLNLLDL-------SAKIED 200
+ + LL K ++ Y+++ S GD R LN+L++ E+
Sbjct: 193 RGIALLNKCRKQVWNIENPLKLSRSILEYVVDLSVGDTRRALNMLEMIEVSTRERKADEE 252
Query: 201 PITLKTLQSLRPHSLNDG--SYSD---DTHYNLTSALIKSLRGSDENASIYYLARLIAGG 255
+++ ++ + ++ ++G +Y D D HY+ SA KS+RG DENAS+YYLAR++ GG
Sbjct: 253 ELSIDDVRDIIKNNSSNGLNTYYDPKGDNHYDTISAFHKSIRGGDENASLYYLARMLQGG 312
Query: 256 ENPEFIARRLVIFASEDIGNANPNALNLAASCLFAVKQIGYPEARIILSQCVIYLACSPK 315
E+P ++ARR++ ASEDIG + + L LA + AV ++G PEA + L+QC + LA +PK
Sbjct: 313 EDPLYVARRMIRIASEDIGLRDSSLLPLAVAAHDAVMKVGLPEADLALAQCCVALARAPK 372
Query: 316 SNTAYRAINQALDCVQKGSLY-----PIPKHL----------LPNAKDYLYPHDY-NGYV 359
S YRA + L + ++Y IP H+ L K Y Y DY G V
Sbjct: 373 SVELYRAWKK-LRAMMSENMYSLASSEIPMHIRNAPTKLMEELGYHKGYKYNPDYIEGKV 431
Query: 360 KQDYLEK 366
+QDY K
Sbjct: 432 QQDYFPK 438
>ref|NP_623374.1| (NC_003869) uncharacterized ATPase related to the helicase subunit
of the Holliday junction resolvase [Thermoanaerobacter
tengcongensis]
gb|AAM24978.1| (AE013131) uncharacterized ATPase related to the helicase subunit
of the Holliday junction resolvase [Thermoanaerobacter
tengcongensis]
Length = 440
Score = 222 bits (565), Expect = 7e-57
Identities = 140/418 (33%), Positives = 227/418 (53%), Gaps = 32/418 (7%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLE 62
L + P++L++F+GQEH++GK L + ++ +GPPGVGKT+LA IIA M
Sbjct: 18 LADRMRPRTLDEFVGQEHILGKGKALRELIEKDSITSMILWGPPGVGKTTLAMIIANMTN 77
Query: 63 RPILLFNATDFKLEDLRLKLKNYQNTLL---KPVVFIDETHRLNKTQQEFLLPIMEKDHA 119
+ F+A +++++ + + + + VVFIDE HR NK QQ+ LP +EK +
Sbjct: 78 SKFVNFSAVLSGIKEIKEIMAQAERDAMYGQRTVVFIDEIHRFNKAQQDAFLPHVEKGNI 137
Query: 120 LILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALT-------LLKKQIEPG 172
+++GA+T++P++ ++ A+ SRS +F + PL+ D+ + +AL L +I+
Sbjct: 138 ILIGATTENPSFEVNSALLSRSKVFMMKPLDVKDIMIILKRALKDEERGLGLYNVEIDEE 197
Query: 173 AKTYLLNNSAGDARALLNLLDLSAKIEDPI------TLKTLQSLRPHSLNDGSYSDDTHY 226
+ S GDAR LN L+++ + + T + L + + + HY
Sbjct: 198 KLEKIALFSNGDARVALNTLEMAVMAANVVNGKRVVTDEILSDVMQKKALLYDKAGEEHY 257
Query: 227 NLTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAAS 286
NL SA KSLR SD +A++Y++AR++ GE+P +IARR++ FASED+G A+P AL++A +
Sbjct: 258 NLISAFHKSLRNSDWDAALYWMARMLEAGEDPLYIARRMIRFASEDVGLADPQALSVAIA 317
Query: 287 CLFAVKQIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHL---- 342
A IG PE + L+Q +YLA +PKSN Y A N+ ++ P+P HL
Sbjct: 318 AYEASHYIGMPECSVNLAQAAVYLALAPKSNALYVAYNRVKKDAEETFAEPVPMHLRNAP 377
Query: 343 ------LPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQ-----GIGFEKTLLEWLDKI 389
L + Y Y HD+ V D P +L + GFEK L E +++I
Sbjct: 378 TKLMKELGYGEGYKYAHDFEEKV-TDMECLPENLKGRRYYIPTDSGFEKKLKERMEEI 434
>ref|NP_251303.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa]
pir||C83318 conserved hypothetical protein PA2613 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG06001.1|AE004690_1 (AE004690) conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 441
Score = 219 bits (558), Expect = 4e-56
Identities = 131/392 (33%), Positives = 230/392 (58%), Gaps = 25/392 (6%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLE 62
L + L P +L++++GQEHL+ + PL +AL+ F+GPPGVGKT+LA+++A + +
Sbjct: 13 LAARLRPANLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLARLLAQVSD 72
Query: 63 RPILLFNATDFKLEDLRLKLKNYQNTLL----KPVVFIDETHRLNKTQQEFLLPIMEKDH 118
+A ++++R ++ + + ++F+DE HR NK+QQ+ LP +E
Sbjct: 73 AHFETISAVLSGVKEIRQAVEVAKQHAAQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGT 132
Query: 119 ALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALT----LLKKQIEPGAK 174
+ +GA+T++P++ L++A+ SR+ ++ L L+++ L +L +AL L K+++ +
Sbjct: 133 LIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVGRALNEDKGLGKRKLRLPEE 192
Query: 175 TY--LLNNSAGDARALLNLLDLSAKIEDP---ITLKTLQSLRPHSLNDGSYSDDTHYNLT 229
++ LL + GD R LLNLL+ +A + + I+ + LQ+L + + Y+
Sbjct: 193 SFQVLLAAADGDGRRLLNLLENAADLAEDGSEISPELLQNLLGDTRRRFDKGGEAFYDQI 252
Query: 230 SALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLF 289
SAL KS+RGS+ +A++Y+ AR++ GG +P +IARR+V ASE++GNA+P AL L S
Sbjct: 253 SALHKSVRGSNPDAALYWFARMLDGGCDPLYIARRVVRMASEEVGNADPRALGLCLSAWD 312
Query: 290 AVKQIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHL------- 342
+++G PE + ++Q ++YLAC+PKSN Y A N A+ V + +P HL
Sbjct: 313 VQERLGSPEGELAVAQAIVYLACAPKSNAVYSAFNAAMRDVAESGSREVPLHLRNAPTKL 372
Query: 343 ---LPNAKDYLYPHDY-NGYVK-QDYLEKPLD 369
L ++Y Y HD + Y +DY + L+
Sbjct: 373 MKSLGYGEEYRYAHDEPDAYAAGEDYFPEDLE 404
>pir||T51223 hypothetical protein B24M22.190 [imported] - Neurospora crassa
emb|CAB99387.1| (AL390354) conserved hypothetical protein [Neurospora crassa]
Length = 622
Score = 216 bits (550), Expect = 4e-55
Identities = 140/398 (35%), Positives = 213/398 (53%), Gaps = 38/398 (9%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLE 62
L + P SL+D GQ+ LVG + L +++ P +G G GKT++A+ IA
Sbjct: 180 LAERMRPGSLDDVFGQD-LVGPNGVLRALIETDRVPSMILWGGSGTGKTTIARCIAQRTG 238
Query: 63 RPILLFNATDFKLEDLRLKLKNYQNTL----LKPVVFIDETHRLNKTQQEFLLPIMEKDH 118
+ NAT + + + N L + ++F DE HR K QQ+ L +E
Sbjct: 239 SRFIELNATSSGVAECKKYFGEAANELHLTGRRTIIFCDEIHRFTKAQQDIFLKPVEAGT 298
Query: 119 ALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTL--------LKKQIE 170
++GA+T++P++ + A+ SR F L PL++ DL R+ +AL L I+
Sbjct: 299 ITLIGATTENPSFKVVPALLSRCRTFTLQPLSRDDLQRILLRALKQEITDQHLPLSPLID 358
Query: 171 PGAKTYLLNNSAGDARALLNLLDLSAKI-----------EDPITLKTLQSLRPHSLNDGS 219
+YL + GDAR LNLL+L+ + ++P+T +++++ +L
Sbjct: 359 DELLSYLCAFADGDARTALNLLELALSLTTTTTTTTSSPDEPLTKESIKASLTKTLVYDR 418
Query: 220 YSDDTHYNLTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPN 279
SD HY+ SA KS+RGSD +AS+YYLAR++ GE+P FIARRLV+ ASED+G A+ +
Sbjct: 419 ASDQ-HYDTISAFHKSIRGSDPDASLYYLARMLQSGEDPLFIARRLVVIASEDVGLADNS 477
Query: 280 ALNLAASCLFAVKQIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSL--YP 337
L LA + A +QIG PEARI L+ C + L +PKS AYR +N A +++ + P
Sbjct: 478 LLPLATATYTATQQIGMPEARIPLAHCTVALCLAPKSTRAYRGLNNAFSALREPGVAALP 537
Query: 338 IPKHL----------LPNAKDYLYPHDY-NGYVKQDYL 364
+P HL + +Y YP +Y NG VKQ YL
Sbjct: 538 VPLHLRNAPTRLMKEMGYGAEYKYPPNYRNGRVKQSYL 575
>sp|P39918|YCAJ_COXBU Hypothetical 49.9 kDa protein in SPOIIIE-SERS intergenic region
Length = 446
Score = 215 bits (547), Expect = 8e-55
Identities = 140/402 (34%), Positives = 219/402 (53%), Gaps = 40/402 (9%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLE 62
L + + P LE+F+GQ HL+GKD PLF+A++ +GPPG GKT+LA+IIA
Sbjct: 10 LATRMRPGCLEEFVGQSHLLGKDKPLFRAIEKGKLHSMILWGPPGSGKTTLAEIIAQKAG 69
Query: 63 RPILLFNATDFKLEDLRLKLKNYQNTLLKP-------VVFIDETHRLNKTQQEFLLPIME 115
+ +A ++D+R ++ + ++F+DE H NK+QQ+ LP +E
Sbjct: 70 ARVESISAVLAGVKDIRDVVERAERVERAERHKGQATILFVDEVHGFNKSQQDAFLPHVE 129
Query: 116 KDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALT-----LLKKQIE 170
K ++GA+T++P++ L++A+ SR+ ++ L L ++DL + AL L KK +E
Sbjct: 130 KGTITLIGATTENPSFQLNNALLSRTRVYVLKQLTEADLLSILENALANEERGLGKKALE 189
Query: 171 --PGAKTYLLNNSAGDARALLNLLDLSAK----------IEDPITLKTLQSLRPHSLNDG 218
+ ++ + GDAR LNLL++ A ++D + K L L
Sbjct: 190 IPEPLRRRIVQFADGDARQCLNLLEIIADFALEENGRFVVDDGLIDKVLTE----GLRRF 245
Query: 219 SYSDDTHYNLTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANP 278
+ Y+ SAL KS+RGSD +AS+Y+L+RL+ GG +P ++ARR+V ASEDIGNA+P
Sbjct: 246 DKRGEAFYDQISALHKSVRGSDPDASLYWLSRLLDGGCDPFYVARRVVRMASEDIGNADP 305
Query: 279 NALNLAASCLFAVKQIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPI 338
AL LA +++G PE + ++Q V+Y AC+ KSN Y+A N A V+ +
Sbjct: 306 RALQLALDAWETFERLGTPEGELAIAQAVVYCACAAKSNAVYKAFNAASREVKSTGSLEV 365
Query: 339 PKHL----------LPNAKDYLYPHD-YNGYVK-QDYLEKPL 368
P +L L KDY Y HD +G+ DYL + L
Sbjct: 366 PLYLRNAPTRLMKSLDYGKDYRYAHDESDGFAAGVDYLPESL 407
>gb|AAG15220.1|AF288461_6 (AF288461) unknown [Chloroflexus aurantiacus]
Length = 377
Score = 215 bits (547), Expect = 8e-55
Identities = 129/338 (38%), Positives = 199/338 (58%), Gaps = 18/338 (5%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLE 62
L + + P++LE+F+GQ HLVG+ L +A+ + +GPPG GKT+LAQIIA+ +
Sbjct: 25 LAARMRPRTLEEFVGQHHLVGEGKLLRRAIANDQLFSLILWGPPGSGKTTLAQIIAHSTK 84
Query: 63 RPILLFNATDFKLEDLRLKLKNYQNTL----LKPVVFIDETHRLNKTQQEFLLPIMEKDH 118
+A + DLR ++ Q+ L + VVFIDE HR NK+QQ+ +LP +E
Sbjct: 85 AHFEPISAVSAGVNDLRRVVQEAQDRLGMFQQRTVVFIDEIHRFNKSQQDAILPYVEDGT 144
Query: 119 ALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTL-------LKKQIEP 171
+++GA+T++P++ ++ A+ SR+ +F+L L ++ L +ALT LK +
Sbjct: 145 IILIGATTENPSFEVNSALLSRARVFKLEALTDEEIGVLIDRALTDRERGLGDLKIMLAR 204
Query: 172 GAKTYLLNNSAGDARALLNLLDLSAKIEDPIT----LKTLQSLRPHSLNDGSYSD---DT 224
A+ YL+N + GDAR LN L+ +A+ + P L T+ +R + D +
Sbjct: 205 DARDYLVNMANGDARTALNALEAAARSKPPAIGETRLITVDDIRDALQSRAVRYDKHGEL 264
Query: 225 HYNLTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLA 284
HY+ SAL KS+R SD + ++Y+L R++ GGE+P +IARRLV A EDIG A+P AL
Sbjct: 265 HYDAISALHKSVRDSDPDGALYWLGRMLDGGEDPLYIARRLVRIAVEDIGLADPQALPQT 324
Query: 285 ASCLFAVKQIGYPEARIILSQCVIYLACSPKSNTAYRA 322
+ AV +G PE + L+Q V+YL +PKSN YRA
Sbjct: 325 IAAQQAVHFLGQPEGELALAQAVVYLCLAPKSNALYRA 362
>gb|AAF80563.1|AF218313_1 (AF218313) putative helicase RUVBL [Homo sapiens]
Length = 445
Score = 213 bits (542), Expect = 3e-54
Identities = 153/440 (34%), Positives = 222/440 (49%), Gaps = 67/440 (15%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLE 62
L + P +L+D+ GQ VG+D L L++ P +GPPG GKT+LA IIA +
Sbjct: 7 LADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNEIPSLILWGPPGCGKTTLAHIIASNSK 66
Query: 63 RPILLF---NATDFKLEDLRLKLKNYQNT----LLKPVVFIDETHRLNKTQQEFLLPIME 115
+ + F +AT+ K D+R +K QN K ++FIDE HR NK+QQ+ LP +E
Sbjct: 67 KHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHVE 126
Query: 116 KDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLL---------- 165
++GA+T++P++ ++ A+ SR + L L + + +A+ L
Sbjct: 127 CGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSRP 186
Query: 166 --------------KKQIEPGAKTYLLNNSAGDARALLNLLDLSA----KIEDPITLKTL 207
IE A L S GDARA LN L L+ K+
Sbjct: 187 TDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARLSSRKMFCKKSG 246
Query: 208 QSLRP-------HSLNDG--------SYSDDTHYNLTSALIKSLRGSDENASIYYLARLI 252
QS P + + +G + + HYN SAL KS+RGSD+NAS+Y+LAR++
Sbjct: 247 QSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASLYWLARML 306
Query: 253 AGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFAVKQIGYPEARIILSQCVIYLAC 312
GGE+P ++ARRLV FASEDIG A+P+AL A + IG PE ++L+QCV+Y A
Sbjct: 307 EGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQCVVYFAR 366
Query: 313 SPKSNTAYRAINQALDCVQ--KGSLYPIPKHL----------LPNAKDYLYPHDYNGYVK 360
+PKS Y A N C++ +G L P+P HL L K Y Y Y+ V
Sbjct: 367 APKSIEVYSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNPMYSEPVD 426
Query: 361 QDYLEKPLDLVSSQGIGFEK 380
Q+YL + L +G+ F K
Sbjct: 427 QEYLPEEL-----RGVDFFK 441
>ref|NP_245194.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK02341.1| (AE006060) unknown [Pasteurella multocida]
Length = 445
Score = 213 bits (542), Expect = 3e-54
Identities = 124/380 (32%), Positives = 210/380 (54%), Gaps = 30/380 (7%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLE 62
L + + P + + GQ HL+G+ PL KAL + H +GPPG GKT+LA+IIA+ +
Sbjct: 16 LAARMRPTTFAQYCGQSHLIGEGKPLRKALDAGHVHSMILWGPPGTGKTTLAEIIAHQIH 75
Query: 63 RPILLFNATDFKLEDLRLKLKNYQNTLL---KPVVFIDETHRLNKTQQEFLLPIMEKDHA 119
+ +A ++++R ++ + L + ++F+DE HR NK+QQ+ LP +E
Sbjct: 76 ADVERISAVTSGIKEIREAIERAKENRLAERRTILFVDEVHRFNKSQQDAFLPHIEDGTI 135
Query: 120 LILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIEPGAKTYLLN 179
+ +GA+T++P++ L++A+ SR+ ++ L L+ ++ + +AL L ++ G ++L
Sbjct: 136 IFIGATTENPSFELNNALLSRAKVYILKSLSTQEITEVLKQAL--LDEERGLGKVRFVLE 193
Query: 180 NSA---------GDARALLNLLDLSAKIEDP------ITLKTLQSLRPHSLNDGSYSDDT 224
+ GDAR LN L+L A + + +TL L+++ D
Sbjct: 194 ENVLECLAEYVNGDARLALNSLELMADMAEETEAGKALTLSLLKNVLGERQARFDKQGDR 253
Query: 225 HYNLTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLA 284
Y+ SAL KS+RGS +A++Y+ AR++A G +P ++ARRL+ ASED+GNA+P A+ +A
Sbjct: 254 FYDAISALHKSVRGSAPDAALYWYARILAAGGDPLYVARRLLAIASEDVGNADPRAMQVA 313
Query: 285 ASCLFAVKQIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHL-- 342
+ ++G E ++Q ++YLA +PKSN YRA NQA V++ Y +P HL
Sbjct: 314 LAAWDCFTRVGAAEGERAIAQAIVYLAVAPKSNAVYRAFNQAKQHVKETPDYEVPAHLRN 373
Query: 343 --------LPNAKDYLYPHD 354
L + Y Y HD
Sbjct: 374 APTHLMKTLGYGEAYRYAHD 393
>ref|NP_064520.2| (NM_020135) Werner helicase interacting protein, isoform 1;
putative helicase RUVBL [Homo sapiens]
Length = 665
Score = 213 bits (542), Expect = 3e-54
Identities = 153/440 (34%), Positives = 222/440 (49%), Gaps = 67/440 (15%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLE 62
L + P +L+D+ GQ VG+D L L++ P +GPPG GKT+LA IIA +
Sbjct: 227 LADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNEIPSLILWGPPGCGKTTLAHIIASNSK 286
Query: 63 RPILLF---NATDFKLEDLRLKLKNYQNT----LLKPVVFIDETHRLNKTQQEFLLPIME 115
+ + F +AT+ K D+R +K QN K ++FIDE HR NK+QQ+ LP +E
Sbjct: 287 KHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHVE 346
Query: 116 KDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLL---------- 165
++GA+T++P++ ++ A+ SR + L L + + +A+ L
Sbjct: 347 CGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSRP 406
Query: 166 --------------KKQIEPGAKTYLLNNSAGDARALLNLLDLSA----KIEDPITLKTL 207
IE A L S GDARA LN L L+ K+
Sbjct: 407 TDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARLSSRKMFCKKSG 466
Query: 208 QSLRP-------HSLNDG--------SYSDDTHYNLTSALIKSLRGSDENASIYYLARLI 252
QS P + + +G + + HYN SAL KS+RGSD+NAS+Y+LAR++
Sbjct: 467 QSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASLYWLARML 526
Query: 253 AGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFAVKQIGYPEARIILSQCVIYLAC 312
GGE+P ++ARRLV FASEDIG A+P+AL A + IG PE ++L+QCV+Y A
Sbjct: 527 EGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQCVVYFAR 586
Query: 313 SPKSNTAYRAINQALDCVQ--KGSLYPIPKHL----------LPNAKDYLYPHDYNGYVK 360
+PKS Y A N C++ +G L P+P HL L K Y Y Y+ V
Sbjct: 587 APKSIEVYSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNPMYSEPVD 646
Query: 361 QDYLEKPLDLVSSQGIGFEK 380
Q+YL + L +G+ F K
Sbjct: 647 QEYLPEEL-----RGVDFFK 661
>ref|NP_230753.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||G82241 conserved hypothetical protein VC1108 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF94267.1| (AE004191) conserved hypothetical protein [Vibrio cholerae]
Length = 449
Score = 211 bits (538), Expect = 9e-54
Identities = 123/382 (32%), Positives = 215/382 (56%), Gaps = 27/382 (7%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLE 62
L + + P+++E ++GQ+H++G PL +AL++ H +GPPG GKT+LA++ A
Sbjct: 17 LAARMRPQTVEQYIGQQHILGPGKPLRRALEAGHIHSMILWGPPGTGKTTLAEVAANYAN 76
Query: 63 RPILLFNATDFKLEDLRLKLKNYQNTLL---KPVVFIDETHRLNKTQQEFLLPIMEKDHA 119
+ +A ++++R ++ + L + ++F+DE HR NK+QQ+ LP +E
Sbjct: 77 AEVERVSAVTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTV 136
Query: 120 LILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIEPGAKTY--- 176
+GA+T++P++ L++A+ SR+ +++LT LN+ ++ + +A+ ++ + A +
Sbjct: 137 TFIGATTENPSFELNNALLSRARVYKLTSLNQQEILQALHQAIADTERGLGKVAAVFADN 196
Query: 177 LLNNSA----GDARALLNLLDL---SAKIEDP----ITLKTLQSLRPHSLNDGSYSDDTH 225
+L+ A GDAR LN L+L A+ +D I L L + ++ D
Sbjct: 197 VLDRLAELVNGDARMSLNYLELLYDMAREDDQGRKQIDLPLLAEVAGEKVSRFDNKGDIW 256
Query: 226 YNLTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAA 285
Y+L SA+ KS+RGSD +A++Y+ AR+I+ G +P +IARRL+ ASED+GNA+P + +A
Sbjct: 257 YDLISAVHKSIRGSDPDAALYWAARMISAGCDPLYIARRLLAIASEDVGNADPRGMQVAL 316
Query: 286 SCLFAVKQIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHL--- 342
+ ++G E ++Q ++YLAC+PKSN Y A QAL + +P HL
Sbjct: 317 AAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAWKQALSDAHNLPEFEVPPHLRNA 376
Query: 343 -------LPNAKDYLYPHDYNG 357
L ++Y Y HD G
Sbjct: 377 PTRLMKDLGYGEEYRYAHDEPG 398
>ref|NP_439735.1| (NC_000907) conserved hypothetical protein [Haemophilus influenzae
Rd]
sp|P45262|YCAJ_HAEIN Hypothetical protein HI1590
pir||F64172 hypothetical protein HI1590 - Haemophilus influenzae (strain Rd
KW20)
gb|AAC23238.1| (U32833) conserved hypothetical protein [Haemophilus influenzae Rd]
Length = 446
Score = 211 bits (537), Expect = 1e-53
Identities = 135/421 (32%), Positives = 222/421 (52%), Gaps = 35/421 (8%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLE 62
L + + P SLE + GQ HL+G+ PL KA+Q+ H F+GPPG GKT+LA+IIA +
Sbjct: 16 LAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGHIYSMIFWGPPGTGKTTLAEIIAQRIN 75
Query: 63 RPILLFNATDFKLEDLRLKLKNYQNTLL---KPVVFIDETHRLNKTQQEFLLPIMEKDHA 119
+ +A ++++R + + L K ++F+DE HR NK+QQ+ LP +E
Sbjct: 76 AEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIEDGTV 135
Query: 120 LILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQI-------EPG 172
+ +GA+T++P++ L++A+ SR+ ++ L L ++++++ +A+ K+ + E
Sbjct: 136 IFIGATTENPSFELNNALLSRARVYVLKSLTTAEIEQVLQQAVEDPKRGLGKERLILEEN 195
Query: 173 AKTYLLNNSAGDARALLNLLDLSAKIEDP------ITLKTLQSLRPHSLNDGSYSDDTHY 226
L GDAR LN L+L + D I L+ + D Y
Sbjct: 196 LLQVLAEYVNGDARLALNCLELMVDMADETENGKKIDRTLLKEVLGERQARFDKQGDRFY 255
Query: 227 NLTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAAS 286
+L SAL KS+RGS +A++Y+ AR++ G +P ++ARRL+ ASED+GNA+P A+ +A +
Sbjct: 256 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALA 315
Query: 287 CLFAVKQIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHL---- 342
++G E ++Q +IYL+ +PKSN Y A N A + Y +P HL
Sbjct: 316 AWDCFSRVGAYEGERAIAQAIIYLSVAPKSNAVYTAFNTAKQQAKDLPDYDVPPHLRNAP 375
Query: 343 ------LPNAKDYLYPHDY-NGYVK-QDYLEKPLDLVSSQ-----GIGFEKTLLEWLDKI 389
L +Y Y HD N Y ++Y P +L +Q G E + E L+++
Sbjct: 376 TNLMKELGYGTEYRYAHDEPNAYAAGENYF--PPELKDTQYYFPTNRGMEIQIKEKLERL 433
Query: 390 R 390
R
Sbjct: 434 R 434
>ref|NP_385491.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
emb|CAC45964.1| (AL591787) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
Length = 436
Score = 210 bits (534), Expect = 3e-53
Identities = 144/419 (34%), Positives = 221/419 (52%), Gaps = 37/419 (8%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIA---- 58
L L P++L + GQEHL G D L + + S F+GPPG GKT++A++++
Sbjct: 19 LADRLRPRTLAEVTGQEHLTGPDGVLTRMIASGSLGSMIFWGPPGTGKTTVARLLSGEAG 78
Query: 59 YMLERPILLFNAT-DFK--LEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115
E+ +F+ D K E R + + + TLL F+DE HR N+ QQ+ LP+ME
Sbjct: 79 LAFEQISAIFSGVADLKKVFESARARRMSGRQTLL----FVDEIHRFNRAQQDSFLPVME 134
Query: 116 KDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQI--EPGA 173
+++GA+T++P++ L+ A+ SR+ + P +++ L+ L +A K + + A
Sbjct: 135 DGTVILVGATTENPSFELNAALLSRARVLTFKPHDEASLEELLKRAEAAEGKPLPLDDEA 194
Query: 174 KTYLLNNSAGDARALLNLLD---LSAKIEDPITLKTLQSLRPHSLNDGSYSDDTHYNLTS 230
+ L+ + GD RA+L L + +A+ E+ LQ + D HYNL S
Sbjct: 195 RASLIRMADGDGRAVLTLAEEVWRAARREEIFDSAGLQEIVQRRAPVYDKGQDGHYNLIS 254
Query: 231 ALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFA 290
AL KS+RGSD +A++YYL R+ GE+P +I RRLV A EDIG A+P AL + + A
Sbjct: 255 ALHKSVRGSDPDAALYYLCRMFDAGEDPLYIGRRLVRMAVEDIGLADPQALAICNAAKDA 314
Query: 291 VKQIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCV-QKGSLYPIPKHLLPNA--- 346
+G PE + L++ +YLA +PKSN Y A A+ + GSL P PKH+L NA
Sbjct: 315 YDYLGSPEGELALAEACVYLATAPKSNAVYTAYKAAMRAAKENGSLLP-PKHIL-NAPTK 372
Query: 347 --------KDYLYPHDY-NGYVKQDYLEKPL---DLVSSQGIGFEKTL---LEWLDKIR 390
Y Y HD + + QDY + + GFE+ + LEW +K+R
Sbjct: 373 LMKGEGYGDGYRYDHDEPDAFSGQDYFPEKMGRKTFYDPPERGFEREIRKRLEWWNKLR 431
>ref|XP_109318.1| (XM_109318) Werner syndrome homolog (human) interacting protein
[Mus musculus]
ref|XP_122519.1| (XM_122519) Werner syndrome homolog (human) interacting protein
[Mus musculus]
Length = 660
Score = 210 bits (534), Expect = 3e-53
Identities = 152/442 (34%), Positives = 222/442 (49%), Gaps = 71/442 (16%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLE 62
L + P +L+D++GQ VG++ L L++ P +GPPG GKT+LA IIA +
Sbjct: 222 LADKMRPDTLQDYIGQSRAVGQETLLRSLLEANEIPSLILWGPPGCGKTTLAHIIANNSK 281
Query: 63 RPILLF---NATDFKLEDLRLKLKNYQNTLL----KPVVFIDETHRLNKTQQEFLLPIME 115
+ + F +AT+ K D+R +K QN K ++FIDE HR NK+QQ+ LP +E
Sbjct: 282 KHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHVE 341
Query: 116 KDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQ------- 168
++GA+T++P++ ++ A+ SR + L L + + +A+ L
Sbjct: 342 CGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSRP 401
Query: 169 -----------------IEPGAKTYLLNNSAGDARALLNLLDL---------------SA 196
IE A L S GDAR LN L L S
Sbjct: 402 TDPLSHSSNCSSEPSVFIEDKAVDTLAYLSDGDARTGLNGLQLAVLARLSSRKVFCKKSG 461
Query: 197 KIEDPITLKTLQS------LRPHSLNDGSYSDDTHYNLTSALIKSLRGSDENASIYYLAR 250
+ P + ++ R H L D + + HYN SAL K++RGSD+NAS+Y+LAR
Sbjct: 462 QTYSPSRVLITENDVKEGLQRSHILYDRA--GEEHYNCISALHKAMRGSDQNASLYWLAR 519
Query: 251 LIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFAVKQIGYPEARIILSQCVIYL 310
++ GGE+P ++ARRLV FASEDIG A+P+AL A + IG PE ++L+QCV+Y
Sbjct: 520 MLEGGEDPLYVARRLVRFASEDIGLADPSALAQAVAAYQGCHFIGMPECEVLLAQCVVYF 579
Query: 311 ACSPKSNTAYRAINQALDCVQ--KGSLYPIPKHL----------LPNAKDYLYPHDYNGY 358
A +PKS Y A N C++ +G L P+P HL L K Y Y Y+
Sbjct: 580 ARAPKSIEVYSAYNNVKACLRSHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNPMYSEP 639
Query: 359 VKQDYLEKPLDLVSSQGIGFEK 380
V QDYL + L +G+ F K
Sbjct: 640 VDQDYLPEEL-----RGVDFFK 656
>dbj|BAB60709.1| (AB056152) Werner helicase interacting protein [Homo sapiens]
Length = 665
Score = 210 bits (534), Expect = 3e-53
Identities = 152/440 (34%), Positives = 221/440 (49%), Gaps = 67/440 (15%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLE 62
L + P +L+D+ GQ VG+D L L++ P +GPPG GKT+LA IIA +
Sbjct: 227 LADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNEIPSLNLWGPPGCGKTTLAHIIASNSK 286
Query: 63 RPILLF---NATDFKLEDLRLKLKNYQNT----LLKPVVFIDETHRLNKTQQEFLLPIME 115
+ + F +AT+ K D+R +K QN K ++FIDE HR NK+QQ+ LP +E
Sbjct: 287 KHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHVE 346
Query: 116 KDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLL---------- 165
++GA+T++P++ ++ A+ SR + L L + + +A+ L
Sbjct: 347 CGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSRP 406
Query: 166 --------------KKQIEPGAKTYLLNNSAGDARALLNLLDLSA----KIEDPITLKTL 207
IE A L S GDARA LN L L+ K+
Sbjct: 407 TDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARLSSRKMFCKKSG 466
Query: 208 QSLRP-------HSLNDG--------SYSDDTHYNLTSALIKSLRGSDENASIYYLARLI 252
QS P + + +G + + HYN SAL KS+RGSD+NAS+Y+LAR++
Sbjct: 467 QSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASLYWLARML 526
Query: 253 AGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFAVKQIGYPEARIILSQCVIYLAC 312
GGE+P ++ARRLV FASEDIG A+P+AL A + +G PE + L+QCV+Y A
Sbjct: 527 EGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQGCHFMGMPECEVFLAQCVVYFAR 586
Query: 313 SPKSNTAYRAINQALDCVQ--KGSLYPIPKHL----------LPNAKDYLYPHDYNGYVK 360
+PKS Y A N C++ +G L P+P HL L K Y Y Y+ V
Sbjct: 587 APKSIEVYSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNPMYSEPVD 646
Query: 361 QDYLEKPLDLVSSQGIGFEK 380
Q+YL + L +G+ F K
Sbjct: 647 QEYLPEEL-----RGVDFFK 661
>gb|AAH10482.1|AAH10482 (BC010482) Unknown (protein for MGC:19428) [Mus musculus]
Length = 660
Score = 210 bits (534), Expect = 3e-53
Identities = 152/442 (34%), Positives = 222/442 (49%), Gaps = 71/442 (16%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLE 62
L + P +L+D++GQ VG++ L L++ P +GPPG GKT+LA IIA +
Sbjct: 222 LADKMRPDTLQDYIGQSRAVGQETLLRSLLEANEIPSLILWGPPGCGKTTLAHIIANNSK 281
Query: 63 RPILLF---NATDFKLEDLRLKLKNYQNTLL----KPVVFIDETHRLNKTQQEFLLPIME 115
+ + F +AT+ K D+R +K QN K ++FIDE HR NK+QQ+ LP +E
Sbjct: 282 KHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHVE 341
Query: 116 KDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQ------- 168
++GA+T++P++ ++ A+ SR + L L + + +A+ L
Sbjct: 342 CGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSRP 401
Query: 169 -----------------IEPGAKTYLLNNSAGDARALLNLLDL---------------SA 196
IE A L S GDAR LN L L S
Sbjct: 402 TDPLSHSSNCSSEPSVFIEDKAVDTLAYLSDGDARTGLNGLQLAVLARLSSRKMFCKKSG 461
Query: 197 KIEDPITLKTLQS------LRPHSLNDGSYSDDTHYNLTSALIKSLRGSDENASIYYLAR 250
+ P + ++ R H L D + + HYN SAL K++RGSD+NAS+Y+LAR
Sbjct: 462 QTYSPSRVLITENDVKEGLQRSHILYDRA--GEEHYNCISALHKAMRGSDQNASLYWLAR 519
Query: 251 LIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFAVKQIGYPEARIILSQCVIYL 310
++ GGE+P ++ARRLV FASEDIG A+P+AL A + IG PE ++L+QCV+Y
Sbjct: 520 MLEGGEDPLYVARRLVRFASEDIGLADPSALAQAVAAYQGCHFIGMPECEVLLAQCVVYF 579
Query: 311 ACSPKSNTAYRAINQALDCVQ--KGSLYPIPKHL----------LPNAKDYLYPHDYNGY 358
A +PKS Y A N C++ +G L P+P HL L K Y Y Y+
Sbjct: 580 ARAPKSIEVYSAYNNVKACLRSHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNPMYSEP 639
Query: 359 VKQDYLEKPLDLVSSQGIGFEK 380
V QDYL + L +G+ F K
Sbjct: 640 VDQDYLPEEL-----RGVDFFK 656
>ref|NP_078028.1| (NC_002162) conserved hypothetical ATP/GTP-binding protein
[Ureaplasma urealyticum]
pir||B82922 conserved hypothetical ATP/GTP-binding protein UU196 [imported] -
Ureaplasma urealyticum
gb|AAF30603.1|AE002119_8 (AE002119) conserved hypothetical ATP/GTP-binding protein
[Ureaplasma urealyticum]
Length = 408
Score = 209 bits (531), Expect = 6e-53
Identities = 134/384 (34%), Positives = 209/384 (53%), Gaps = 27/384 (7%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLE 62
+ +L NP S++D +GQ++L+ + + + + + FYGPPGVGK+SLA+++A L+
Sbjct: 6 IKTLKNPHSIDDIVGQKYLLDEIGIIRRMVNHHQVFNLIFYGPPGVGKSSLAKVLAQDLK 65
Query: 63 RPILLFN-ATDFKLEDLR-----LKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEK 116
P FN D K + ++ L L N+ ++ IDE HRLNK +Q+ LLPI+E
Sbjct: 66 VPFAFFNPVVDSKKQLMQIIEQALDLNNF-------IIIIDEIHRLNKDKQDILLPIIEA 118
Query: 117 DHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIEPGAKTY 176
+ + +T++P + ++ A+RSR + L PL S + K L +++ EP A
Sbjct: 119 NKIKLFATTTENPFFVINPALRSRCQLLSLKPLTSSQISERI-KTLINVEEVFEPQAFNL 177
Query: 177 LLNNSAGDARALLNLLDLSAKI--EDPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIK 234
L+N + GD RA++N L++ + E + L+ + S GS D ++L SA K
Sbjct: 178 LINKTNGDLRAVINTLEIIYLLYKEHKVDYVLLKRIMQESYALGSSDGDEIHDLKSAFHK 237
Query: 235 SLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFAVKQI 294
S+RGSD +A++YYLARLI G+ E I RR+ + EDIG ANPN + + + +
Sbjct: 238 SMRGSDCDAALYYLARLIIIGDF-EAIYRRVSVCVHEDIGLANPNLCLRVDQGINSCRFL 296
Query: 295 GYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHLLP---------N 345
GYPE ++IL+ V+ + S KSN+ Y A +A + G Y IP H+
Sbjct: 297 GYPENQVILANLVLQICLSNKSNSVYLAYQKAFEDAANGKQYSIPNHVRDAHYASAIKLG 356
Query: 346 AKDYLYPHDY-NGYVKQDYLEKPL 368
Y YPHD+ N YV Q YL + L
Sbjct: 357 VHGYKYPHDFKNNYVNQQYLPREL 380
>ref|NP_102147.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB47933.1| (AP002994) hypothetical protein [Mesorhizobium loti]
Length = 435
Score = 209 bits (531), Expect = 6e-53
Identities = 135/379 (35%), Positives = 204/379 (53%), Gaps = 24/379 (6%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIA---- 58
L L PK+L + +GQEHL G D L + + S F+GPPG GKT++A+++A
Sbjct: 19 LADRLRPKNLGEVVGQEHLTGPDGALTRLIGSGSLGSMIFWGPPGTGKTTVARLLAGETS 78
Query: 59 YMLERPILLFNAT-DFK--LEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115
E+ +F+ D K E +L+ N + TLL F+DE HR N+ QQ+ LP+ME
Sbjct: 79 LAFEQISAVFSGVADLKKVFETAKLRRANGRQTLL----FVDEIHRFNRAQQDSFLPVME 134
Query: 116 KDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQI--EPGA 173
+++GA+T++P++ L+ A+ SR+ + L + + +L +A + + + A
Sbjct: 135 DGTVVLVGATTENPSFELNAALLSRARVMVFHSLGEESIAKLMVRAEETEGRALPLDDEA 194
Query: 174 KTYLLNNSAGDARALLNLLD------LSAKIEDPITLKTLQSLRPHSLNDGSYSDDTHYN 227
+ L+ S GD RA L L + ++ DP L+ + R + G D HYN
Sbjct: 195 RAMLIRMSDGDGRASLTLAEEVWRAAKPGEVFDPEGLQRIVQRRAPIYDKGQ---DGHYN 251
Query: 228 LTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASC 287
L SAL KS+RGSD +A++YYLAR+ GE+P ++ RRLV A EDIG A+P AL +A +
Sbjct: 252 LISALHKSVRGSDPDAALYYLARMFDAGEDPLYLGRRLVRMAMEDIGLADPQALVVANAA 311
Query: 288 LFAVKQIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCV-QKGSLYPIPKHLLPNA 346
A +G PE + ++ +YLA +PKSN Y A A Q GSL P PKH+L
Sbjct: 312 KDAYDYLGSPEGELAFAEATVYLATAPKSNAVYTAFKAATQAAKQHGSLLP-PKHILNAP 370
Query: 347 KDYLYPHDYNGYVKQDYLE 365
+ DY + D+ E
Sbjct: 371 TKLMKEEDYGAGYRYDHDE 389
>ref|NP_594449.1| (NC_003424) putative replication factor subunit
[Schizosaccharomyces pombe]
pir||T38421 hypothetical protein SPAC26H5.02c - fission yeast
(Schizosaccharomyces pombe)
emb|CAB16188.1| (Z99126) putative replication factor subunit [Schizosaccharomyces
pombe]
Length = 497
Score = 207 bits (527), Expect = 2e-52
Identities = 133/393 (33%), Positives = 214/393 (53%), Gaps = 27/393 (6%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLE 62
L PKSL++++GQE LVG+ + ++ +G G GKT+LA++IA +
Sbjct: 86 LAERARPKSLDEYVGQEELVGERGIIRNLIEQDRCNSMILWGSAGTGKTTLARLIAVTTK 145
Query: 63 RPILLFNATDFKLEDLRLKLKNYQNTLL----KPVVFIDETHRLNKTQQEFLLPIMEKDH 118
+ +AT + D R ++ QN L K ++F+DE HR N+ QQ+ LP++EK
Sbjct: 146 SRFIEISATSTTVADCRKIFEDSQNYLTLTGRKTIIFLDEVHRFNRAQQDIFLPMVEKGL 205
Query: 119 ALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIE---PGAKT 175
++GA+T++P++ L+ A+ SR +F L L + ++ ++ A L +++ P +T
Sbjct: 206 VTLIGATTENPSFRLNSALISRCPVFVLKKLTRDNVKKILNHACLLESERLGSSMPNVET 265
Query: 176 ----YLLNNSAGDARALLNLLDLSAKI--EDPITLKTLQSLRPHSLNDGSYSDDTHYNLT 229
Y+ + GDAR LN L++S + + P++L+ ++ S D HY+
Sbjct: 266 SIIDYISAITDGDARMALNALEMSIGMLRQGPLSLEDIKDKLVRSSALYDRVGDVHYDTI 325
Query: 230 SALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLF 289
SA KS+RGSD +A++YYL R++ GE+P ++ARR+V ASEDIG A+ + L LA+S
Sbjct: 326 SAFHKSVRGSDVDATLYYLGRMLESGEDPLYVARRMVRIASEDIGIADNSMLPLASSTFT 385
Query: 290 AVKQIGYPEARIILSQCVIYLACSPKSNTAYR---AINQALDCVQKGSLYPIPKHL---- 342
AV+Q+G PEA +IL+ C + LA +PKS YR A+ L IP H+
Sbjct: 386 AVQQVGMPEADVILAHCAVALALAPKSVDVYRSYNAVKSFLSSHPDAGRAEIPMHIRNAP 445
Query: 343 ------LPNAKDYLYPHDY-NGYVKQDYLEKPL 368
L K Y Y DY +G V Q+ ++ L
Sbjct: 446 TNLMKQLGYHKGYKYNPDYKDGLVMQEVIKNIL 478
>ref|NP_084491.1| (NM_030215) Werner syndrome homolog (human) interacting protein
[Mus musculus]
dbj|BAB60708.1| (AB056151) Werner helicase interacting protein [Mus musculus]
Length = 660
Score = 206 bits (525), Expect = 3e-52
Identities = 151/442 (34%), Positives = 221/442 (49%), Gaps = 71/442 (16%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLE 62
L + P +L+D++GQ VG++ L L++ P +GPPG GKT+LA IIA +
Sbjct: 222 LADKMRPDTLQDYIGQSRAVGEETLLRSLLEANEIPSLILWGPPGCGKTTLAHIIANNSK 281
Query: 63 RPILLF---NATDFKLEDLRLKLKNYQNTLL----KPVVFIDETHRLNKTQQEFLLPIME 115
+ + F +AT+ K D+R +K QN K ++FIDE HR NK+QQ+ LP +E
Sbjct: 282 KHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHVE 341
Query: 116 KDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQ------- 168
++GA+T++P++ ++ A+ SR + L L + + +A+ L
Sbjct: 342 CGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSRP 401
Query: 169 -----------------IEPGAKTYLLNNSAGDARALLNLLDL---------------SA 196
IE A L S GDAR LN L L S
Sbjct: 402 TDPLSHSSNCSSEPSVFIEDKAVDTLAYLSDGDARTGLNGLQLAVLARLSSKKVFCKKSG 461
Query: 197 KIEDPITLKTLQS------LRPHSLNDGSYSDDTHYNLTSALIKSLRGSDENASIYYLAR 250
+ P + ++ R H L D + + HYN SAL K++RGSD+NAS+Y+LAR
Sbjct: 462 QTYSPSRVLITENDVKEGLQRSHILYDRA--GEEHYNCISALHKAMRGSDQNASLYWLAR 519
Query: 251 LIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFAVKQIGYPEARIILSQCVIYL 310
++ GGE+P ++ARRLV FASEDIG A+P+AL A + IG E ++L+QCV+Y
Sbjct: 520 MLEGGEDPLYVARRLVRFASEDIGLADPSALAQAVAAYQGCHFIGMHECEVLLAQCVVYF 579
Query: 311 ACSPKSNTAYRAINQALDCVQ--KGSLYPIPKHL----------LPNAKDYLYPHDYNGY 358
A +PKS Y A N C++ +G L P+P HL L K Y Y Y+
Sbjct: 580 ARAPKSIEVYSAYNNVKACLRSHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNPMYSEP 639
Query: 359 VKQDYLEKPLDLVSSQGIGFEK 380
V QDYL + L +G+ F K
Sbjct: 640 VDQDYLPEEL-----RGVDFFK 656
>ref|NP_420096.1| (NC_002696) ATPase, AAA family [Caulobacter crescentus CB15]
gb|AAK23264.1| (AE005803) ATPase, AAA family [Caulobacter crescentus CB15]
Length = 433
Score = 205 bits (522), Expect = 6e-52
Identities = 140/387 (36%), Positives = 212/387 (54%), Gaps = 34/387 (8%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAY--- 59
L L P+SL++ +GQ+HL+G + P+ + ++ +GPPG GKT++A+++A
Sbjct: 18 LADRLRPQSLDEVVGQQHLLGPEGPIGRMAAARRLASMILWGPPGTGKTTIARLLAKAGG 77
Query: 60 --MLERPILLFNATDFK--LEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115
++ + D K E R + Q+TLL F+DE HR N+ QQ+ LP +E
Sbjct: 78 YEFMQISAVFSGVADLKKAFEQARARRMAGQSTLL----FVDEIHRFNRAQQDGFLPFVE 133
Query: 116 KDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQ--IEPGA 173
+ ++GA+T++P++ L+ A+ SR +F L L + L+ L +A + I+ A
Sbjct: 134 EGIVTLVGATTENPSFELNGALLSRCQVFVLKRLTEESLELLLQRAEAAENRPLPIDAEA 193
Query: 174 KTYLLNNSAGDARALLNLLDLSAKIEDPITLKTLQSLRPHSLNDGSYSDDT--HYNLTSA 231
++ L+ + GD R LL L + I L Q + +Y D HYNL SA
Sbjct: 194 RSALVAMADGDGRYLLTLAETLFSIGTDTPLNPTQLGQFLQKRRPAYDKDREEHYNLISA 253
Query: 232 LIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFAV 291
L KS+RGSD +A++Y+LAR++ GGE+P FIARRLV ASEDIG A+P +L L + A
Sbjct: 254 LHKSVRGSDPDAALYWLARMLEGGEDPLFIARRLVRMASEDIGAADPLSLLLTTAAKDAY 313
Query: 292 KQIGYPEARIILSQCVIYLACSPKSN---TAYRAINQALDCVQKGSLYPIPKHLLPNA-- 346
+G PE + L+Q V+++A +PKSN TAY+A +A + GSL P P H+L NA
Sbjct: 314 DFLGSPEGELALAQAVVHMASAPKSNAVYTAYKAARRA--AKETGSLMP-PSHIL-NAPT 369
Query: 347 ---------KDYLYPHDYNGYVK-QDY 363
Y Y HD G V Q+Y
Sbjct: 370 KLMKSLGYGDGYAYDHDVEGGVSGQNY 396
>ref|NP_354889.1| (NC_003062) AGR_C_3505p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_532594.1| (NC_003304) ATPase, AAA family protein [Agrobacterium tumefaciens
str. C58 (U. Washington)]
gb|AAK87674.1| (AE008110) AGR_C_3505p [Agrobacterium tumefaciens str. C58
(Cereon)]
gb|AAL42910.1| (AE009145) ATPase, AAA family protein [Agrobacterium tumefaciens
str. C58 (U. Washington)]
Length = 438
Score = 203 bits (516), Expect = 3e-51
Identities = 143/419 (34%), Positives = 218/419 (51%), Gaps = 37/419 (8%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIA---- 58
L L PK+L + GQ HL G++ L + + S F+GPPG GKT++A++++
Sbjct: 20 LADRLRPKTLSEVSGQPHLTGEEGVLRRMIDSGSLGSMIFWGPPGTGKTTVARLLSGEAG 79
Query: 59 YMLERPILLFNAT-DFK--LEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115
E+ +F+ D K E R + N + TLL F+DE HR N+ QQ+ LP+ME
Sbjct: 80 LAFEQISAIFSGVADLKKVFEAARTRRMNGRQTLL----FVDEIHRFNRAQQDSFLPVME 135
Query: 116 KDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIE--PGA 173
+++GA+T++P++ L+ A+ SR+ + ++ L L +A K + A
Sbjct: 136 DGTIILVGATTENPSFELNAALLSRARVLTFGSHDEDSLSELLKRAEEAEGKPLPLTEEA 195
Query: 174 KTYLLNNSAGDARALLNLLD---LSAKIEDPITLKTLQSLRPHSLNDGSYSDDTHYNLTS 230
+ LL + GD RA+L L + +A+ ++ + L + S D HYNL S
Sbjct: 196 RASLLRMADGDGRAVLTLAEEVWRAARKDETFDTEGLTRIVQRRAPVYDKSQDGHYNLIS 255
Query: 231 ALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFA 290
AL KS+RGSD +A++YYLAR+ GE+P ++ RRLV A EDIG A+P AL + + A
Sbjct: 256 ALHKSVRGSDPDAALYYLARMFDAGEDPLYLGRRLVRMAVEDIGLADPQALAVCNAAKDA 315
Query: 291 VKQIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCV-QKGSLYPIPKHLLPNA--- 346
+G PE + L+Q +YLA +PKSN Y A A+ + GSL P PKH+L NA
Sbjct: 316 YDYLGSPEGELALAQACVYLATAPKSNAVYTAFKAAMRAAKENGSLVP-PKHIL-NAPTK 373
Query: 347 --------KDYLYPHDY-NGYVKQDYLEKPL---DLVSSQGIGFEKTL---LEWLDKIR 390
Y Y HD + + QDY + + GFE+ + L+W K+R
Sbjct: 374 LMKGEGYGDGYRYDHDEPDAFSGQDYFPEKMGRTTFYDPPDRGFEREIRKRLDWWAKLR 432
>gb|AAL93026.1|AC116032_15 (AC116032) PUTATIVE HELICASE RUVBL [Dictyostelium discoideum]
Length = 876
Score = 201 bits (512), Expect = 9e-51
Identities = 139/409 (33%), Positives = 208/409 (49%), Gaps = 43/409 (10%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLE 62
L+ + P L DF+GQE L+ D + K QS P YGPPG GKT+LAQI+A
Sbjct: 197 LSEQMRPTELSDFIGQESLLVGDPIVKKLFQSPELPSFILYGPPGCGKTTLAQIVASKSN 256
Query: 63 RPILLFNATDFKLEDLRLKLKNYQNTLL---KPVVFIDETHRLNKTQQEFLLPIMEKDHA 119
I +A ++D++ + +NTL K ++FIDE HR NK QQ+ LLP +E
Sbjct: 257 YNINALSAVGSGVKDIKEVIDKARNTLQFGKKTILFIDEIHRYNKLQQDVLLPAIESGII 316
Query: 120 LILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALT----LLKKQI--EPGA 173
+++GA+T++P++ L+ A+ SR +F++ L K +L+ L + L L+ +++ + A
Sbjct: 317 ILIGATTENPSFELNGALLSRCKVFKMEKLTKENLETLIKRTLEVTPLLMDRRLIMDEDA 376
Query: 174 KTYLLNNSAGDARALLNLLDLSAKIEDP----------------------ITLKTLQSLR 211
L + GDAR +N+LD++ K +T K + SL
Sbjct: 377 IKSLAEIADGDARVAINVLDMAIKANKEEQTYKERMEEKHSTSGIVRDIVLTKKQMGSLL 436
Query: 212 PHSLNDGSYSDDTHYNLTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASE 271
+ D Y L SAL KS+RGSD NA+ Y++ R++ G P +I RR+V ASE
Sbjct: 437 QRTSLIYDKGGDAFYELISALHKSVRGSDANATAYWVIRMLESGCEPLYIVRRMVRMASE 496
Query: 272 DIGNANPNALNLAASCLFAVKQIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQ 331
DIG A+ +AL LA + AV +G PE + QC +YLA + KSN+ + ++
Sbjct: 497 DIGLADNSALPLAIAAYQAVHFVGMPECTNAILQCAVYLANAAKSNSCDHWYAHTREYLE 556
Query: 332 KGSLYPIPKHL--LPN--------AKDYLYPH--DYNGYVKQDYLEKPL 368
K P+P HL P DY Y H D V Q YL +P+
Sbjct: 557 KHEGPPVPIHLRNAPTKMMKDWGYGADYQYNHAFDDQSQVTQIYLPEPI 605
>gb|AAG35725.1|AF208046_1 (AF208046) RuvB-like RUVBL1 [Mus musculus]
Length = 445
Score = 201 bits (511), Expect = 1e-50
Identities = 148/430 (34%), Positives = 215/430 (49%), Gaps = 71/430 (16%)
Query: 15 FLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERPILLF---NAT 71
++GQ VG++ L L++ P +GPPG GKT+LA IIA ++ + F +AT
Sbjct: 19 YIGQSRAVGQETLLRSLLEANEIPSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSAT 78
Query: 72 DFKLEDLRLKLKNYQNTLL----KPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQ 127
+ K D+R +K QN K ++FIDE HR NK+QQ+ LP +E ++GA+T+
Sbjct: 79 NAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHVECGTITLIGATTE 138
Query: 128 DPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQ------------------- 168
+P++ ++ A+ SR + L L + + +A+ L
Sbjct: 139 NPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSRPTDPLSHSSNCSS 198
Query: 169 -----IEPGAKTYLLNNSAGDARALLNLLDL---------------SAKIEDPITLKTLQ 208
IE A L S GDAR LN L L S + P + +
Sbjct: 199 EPSVFIEDKAVDTLAYLSDGDARTGLNGLQLAVLARLSSRKVFCKKSGQTYSPSRVLITE 258
Query: 209 S------LRPHSLNDGSYSDDTHYNLTSALIKSLRGSDENASIYYLARLIAGGENPEFIA 262
+ R H L D + + HYN SAL K++RGSD+NAS+Y+LAR++ GGE+P ++A
Sbjct: 259 NDVKEGLQRSHILYDRA--GEEHYNCISALHKAMRGSDQNASLYWLARMLEGGEDPLYVA 316
Query: 263 RRLVIFASEDIGNANPNALNLAASCLFAVKQIGYPEARIILSQCVIYLACSPKSNTAYRA 322
RRLV FASEDIG A+P+AL A + IG PE ++L+QCV+Y A +PKS Y A
Sbjct: 317 RRLVRFASEDIGLADPSALAQAVAAYQGCHFIGMPECEVLLAQCVVYFARAPKSIEVYSA 376
Query: 323 INQALDCVQ--KGSLYPIPKHL----------LPNAKDYLYPHDYNGYVKQDYLEKPLDL 370
N C++ +G L P+P HL L K Y Y Y+ V QDYL + L
Sbjct: 377 YNNVKACLRSHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNPMYSEPVDQDYLPEEL-- 434
Query: 371 VSSQGIGFEK 380
+G+ F K
Sbjct: 435 ---RGVDFFK 441
>ref|NP_309004.1| (NC_002695) putative polynucleotide enzyme [Escherichia coli
O157:H7]
ref|NP_415412.1| (NC_000913) putative polynucleotide enzyme [Escherichia coli K12]
sp|P45526|YCAJ_ECOLI Hypothetical protein ycaJ
pir||C64828 ycaJ protein - Escherichia coli
gb|AAC73978.1| (AE000191) putative polynucleotide enzyme [Escherichia coli K12]
dbj|BAA35617.1| (D90726) Hypothetical protein HI1590 [Escherichia coli]
dbj|BAA35624.1| (D90727) Hypothetical protein HI1590 [Escherichia coli]
dbj|BAB34400.1| (AP002553) putative polynucleotide enzyme [Escherichia coli
O157:H7]
Length = 447
Score = 199 bits (507), Expect = 4e-50
Identities = 119/382 (31%), Positives = 209/382 (54%), Gaps = 33/382 (8%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLE 62
L + + P++L ++GQ+HL+ PL +A+++ H +GPPG GKT+LA++IA
Sbjct: 16 LAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75
Query: 63 RPILLFNATDFKLEDLRLKL---KNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHA 119
+ +A ++++R + + +N + ++F+DE HR NK+QQ+ LP +E
Sbjct: 76 ADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTI 135
Query: 120 LILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIEPGAKTYLLN 179
+GA+T++P++ L+ A+ SR+ ++ L L+ D++++ +A+ K G + +L
Sbjct: 136 TFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAME--DKTRGYGGQDIVLP 193
Query: 180 NSA---------GDARALLNLLDLSAKIEDPITLKTLQSLRPHSLND--GSYS------D 222
+ GDAR LN L++ A + + + + L+P L + G S
Sbjct: 194 DETRRAIAELVNGDARRALNTLEMMADMAE-VDDSGKRVLKPELLTEIAGERSARFDNKG 252
Query: 223 DTHYNLTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALN 282
D Y+L SAL KS+RGS +A++Y+ AR+I G +P ++ARR + ASED+GNA+P A+
Sbjct: 253 DRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQ 312
Query: 283 LAASCLFAVKQIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHL 342
+A + ++G E ++Q ++YLAC+PKSN Y A AL ++ Y +P HL
Sbjct: 313 VAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHL 372
Query: 343 ----------LPNAKDYLYPHD 354
+ ++Y Y HD
Sbjct: 373 RNAPTKLMKEMGYGQEYRYAHD 394
>ref|NP_286769.1| (NC_002655) putative polynucleotide enzyme [Escherichia coli
O157:H7 EDL933]
gb|AAG55379.1|AE005278_5 (AE005278) putative polynucleotide enzyme [Escherichia coli O157:H7
EDL933]
Length = 447
Score = 198 bits (504), Expect = 8e-50
Identities = 119/382 (31%), Positives = 208/382 (54%), Gaps = 33/382 (8%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLE 62
L + + P++L ++GQ+HL+ PL +A+++ H +GPPG GKT+LA++IA
Sbjct: 16 LAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75
Query: 63 RPILLFNATDFKLEDLRLKL---KNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHA 119
+ +A ++++R + + +N + ++F+DE HR NK+QQ+ LP +E
Sbjct: 76 ADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTI 135
Query: 120 LILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIEPGAKTYLLN 179
+GA+T++P++ L+ A+ SR+ ++ L L+ D++++ +A+ K G + +L
Sbjct: 136 TFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAME--DKTRGYGGQDIVLP 193
Query: 180 NSA---------GDARALLNLLDLSAKIEDPITLKTLQSLRPHSLND--GSYS------D 222
+ GDAR LN L++ A + + + + L P L + G S
Sbjct: 194 DETRRAIAELVNGDARRALNTLEMMADMAE-VDDSGKRVLXPELLTEIAGERSARFDNKG 252
Query: 223 DTHYNLTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALN 282
D Y+L SAL KS+RGS +A++Y+ AR+I G +P ++ARR + ASED+GNA+P A+
Sbjct: 253 DRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQ 312
Query: 283 LAASCLFAVKQIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHL 342
+A + ++G E ++Q ++YLAC+PKSN Y A AL ++ Y +P HL
Sbjct: 313 VAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHL 372
Query: 343 ----------LPNAKDYLYPHD 354
+ ++Y Y HD
Sbjct: 373 RNAPTKLMKEMGYGQEYRYAHD 394
>ref|NP_455450.1| (NC_003198) conserevd hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
ref|NP_459938.1| (NC_003197) paral putative polynucleotide enzyme [Salmonella
typhimurium LT2]
gb|AAL19897.1| (AE008741) paral putative polynucleotide enzyme [Salmonella
typhimurium LT2]
emb|CAD05362.1| (AL627268) conserevd hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 447
Score = 196 bits (499), Expect = 3e-49
Identities = 117/384 (30%), Positives = 205/384 (52%), Gaps = 37/384 (9%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLE 62
L + + P++L ++GQ+HL+ PL +A+++ H +GPPG GKT+LA++IA
Sbjct: 16 LAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAS 75
Query: 63 RPILLFNATDFKLEDLRLKL---KNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHA 119
+ +A ++++R + + +N + ++F+DE HR NK+QQ+ LP +E
Sbjct: 76 ADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTI 135
Query: 120 LILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIEPGAKTYLLN 179
+GA+T++P++ L+ A+ SR+ ++ L L D++++ +A+ K G + +L
Sbjct: 136 TFIGATTENPSFELNSALLSRARVYLLKSLTTDDIEQVLDQAMQ--DKTRGYGDQDIVLP 193
Query: 180 NSA---------GDARALLNLLDLSAKIED----------PITLKTLQSLRPHSLNDGSY 220
+ GDAR LN L++ A + + P L + R ++
Sbjct: 194 DETRRAIAELVNGDARRALNTLEMMADMAEADDSGKRVLLPALLTEIAGERSARFDN--- 250
Query: 221 SDDTHYNLTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNA 280
D Y+L SAL KS+RGS +A++Y+ AR+I G +P ++ARR + ASED+GNA+P A
Sbjct: 251 KGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRA 310
Query: 281 LNLAASCLFAVKQIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPK 340
+ +A + ++G E ++Q ++YLAC+PKSN Y A AL ++ Y +P
Sbjct: 311 MQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPV 370
Query: 341 HL----------LPNAKDYLYPHD 354
HL + ++Y Y HD
Sbjct: 371 HLRNAPTKLMKEMGYGQEYRYAHD 394
>ref|NP_404971.1| (NC_003143) putative ATPase protein [Yersinia pestis]
emb|CAC90207.1| (AJ414148) putative ATPase protein [Yersinia pestis]
Length = 447
Score = 196 bits (498), Expect = 4e-49
Identities = 116/382 (30%), Positives = 207/382 (53%), Gaps = 33/382 (8%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLE 62
L + + P +L+ ++GQ+HL+ PL +A+ + +GPPG GKT+LA+II +
Sbjct: 16 LAARMRPLTLDQYIGQQHLLAPGKPLPRAIVAGQLHSMILWGPPGTGKTTLAEIIGRYGQ 75
Query: 63 RPILLFNATDFKLEDLRLKLKNYQNTL---LKPVVFIDETHRLNKTQQEFLLPIMEKDHA 119
+ +A ++++R ++ + + ++F+DE HR NK+QQ+ LP +E
Sbjct: 76 ADVERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTI 135
Query: 120 LILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIEPGAKTYLLN 179
+GA+T++P++ L+ A+ SR+ ++ L L +D++++ +A++ + G + LL
Sbjct: 136 TFIGATTENPSFELNSALLSRARVYLLKALTAADIEKVIDQAMSDSSRGY--GGQNILLP 193
Query: 180 NSA---------GDARALLNLLDLSAKIEDPITLKTLQSLRPHSLNDGS--------YSD 222
+ GDAR LN L++ A + + I ++ L P L + S
Sbjct: 194 DETRRMMSELVGGDARRALNSLEMMADMAE-IDASGVRVLTPELLKEVSGERSARFDNKG 252
Query: 223 DTHYNLTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALN 282
D +Y+L SA+ KS+RGS +A++Y+ AR+I G +P ++ARRL+ ASED+GNA+P A+
Sbjct: 253 DRYYDLISAVHKSIRGSAPDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPRAMQ 312
Query: 283 LAASCLFAVKQIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHL 342
+A S ++G E ++Q ++YLAC+PKSN Y A A+ + + +P+HL
Sbjct: 313 VAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYAAFKAAMQDARDKPDFDVPEHL 372
Query: 343 ----------LPNAKDYLYPHD 354
+ +Y Y HD
Sbjct: 373 RNAPTKLMKEMGLGAEYRYAHD 394
>gb|EAA00093.1| (AAAB01008986) agCP10030 [Anopheles gambiae str. PEST]
Length = 587
Score = 196 bits (498), Expect = 4e-49
Identities = 134/410 (32%), Positives = 205/410 (49%), Gaps = 59/410 (14%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLE 62
L + P ++E+++GQE ++G++ L K + P +GPPG GKT+LA IIA +
Sbjct: 157 LAERVRPSTIEEYVGQEQIIGQNTILRKLFEHDTIPSMILWGPPGCGKTTLANIIANRCK 216
Query: 63 RPILLFNATDF--------KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIM 114
R + +++++ KN + ++F+DE HR NK QQ+ LP +
Sbjct: 217 RNVGTLRFAKLSATMAGVAEVKEVVKVAKNESKFNRRTILFMDEIHRFNKQQQDIFLPHV 276
Query: 115 EKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIEPGA- 173
E ++GA+T++P++SL+ A+ SR + L + R+ +AL K + P +
Sbjct: 277 ESGTITLIGATTENPSFSLNSALLSRCRVIVLEKHTVDSMMRIMERALPEYKAVMVPASL 336
Query: 174 --------KT--------------YLLNNSAGDARALLNLLDLSAK-------------I 198
KT +L GDAR LN L L+
Sbjct: 337 NNNVPDLSKTSYVPRMLVHEETVRWLAETCDGDARIGLNSLQLALSSAAAPPPATNGRSF 396
Query: 199 EDPITLKTLQSLRP-----HSLNDGSYSDDTHYNLTSALIKSLRGSDENASIYYLARLIA 253
D + TL+ +R H L D D HY++ SAL KS+R SD+NA++Y+ R++A
Sbjct: 397 TDSLITVTLEDVREGLKKSHLLYDRK--GDQHYDIISALHKSIRASDDNAALYWATRMVA 454
Query: 254 GGENPEFIARRLVIFASEDIGNANPNALNLAASCLFAVKQIGYPEARIILSQCVIYLACS 313
GE+P +I RR+V ASEDIG A+ NAL +A + L AV+ +G PEA I++QC +YLA +
Sbjct: 455 SGEDPRYICRRMVRMASEDIGLADANALQVATATLSAVQSVGLPEADCIIAQCAVYLARA 514
Query: 314 PKSNTAYRAINQALDCVQ--KGSLYPIPKHLLPNA-----KDYLYPHDYN 356
PKS Y A + + KG + +P H L NA KD Y YN
Sbjct: 515 PKSREVYEAYKRCRASIDGWKGPMPGVPLH-LRNAPTKLMKDLRYGAGYN 563
>ref|NP_539701.1| (NC_003317) ATPase associated with chromosome
architecture/replication [Brucella melitensis]
gb|AAL51965.1| (AE009519) ATPase associated with chromosome
architecture/replication [Brucella melitensis]
Length = 457
Score = 196 bits (498), Expect = 4e-49
Identities = 132/390 (33%), Positives = 203/390 (51%), Gaps = 29/390 (7%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIA---- 58
L L PK L + GQEHL G + L + + S F+GPPG GKT++A+++A
Sbjct: 39 LADRLRPKHLSEVTGQEHLTGPEGVLTRMIASGSLGSMVFWGPPGTGKTTVARLLAGETD 98
Query: 59 YMLERPILLFNAT-DFK--LEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115
E+ +F+ D K E R + + + TLL F+DE HR N+ QQ+ LP+ME
Sbjct: 99 LAFEQISAIFSGVADLKRVFEAARARRMSGRQTLL----FVDEIHRFNRAQQDSFLPVME 154
Query: 116 KDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQI--EPGA 173
+++GA+T++P++ L+ A+ SR+ + P + + L +A + + + A
Sbjct: 155 DGTVILIGATTENPSFELNAALLSRARVLTFHPHDSESIATLLKRAEEQEGQALPLDDEA 214
Query: 174 KTYLLNNSAGDARALLNLLDLSAKIEDP---ITLKTLQSLRPHSLNDGSYSDDTHYNLTS 230
+ L+ + GD RA L L + + P LQ + S D HYNL S
Sbjct: 215 RASLIRMADGDGRAALTLAEEVWRAVRPGEVFDAAKLQDVVQRRAPIYDKSQDGHYNLIS 274
Query: 231 ALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFA 290
AL KS+RGSD +A++YYL+R+ GE+P +I RRLV + EDIG A+P AL + + A
Sbjct: 275 ALHKSVRGSDPDAALYYLSRMFDAGEDPLYIGRRLVRMSVEDIGLADPQALAICNAAKDA 334
Query: 291 VKQIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCV-QKGSLYPIPKHLL------ 343
+G PE + L+Q +YLA +PKSN Y A ++ + GSL P PKH+L
Sbjct: 335 YDYLGSPEGELALAQACVYLATAPKSNAVYVAFKNSMRAAKENGSLLP-PKHILNAPTKL 393
Query: 344 ----PNAKDYLYPHDY-NGYVKQDYLEKPL 368
++ Y Y HD + + QDY + +
Sbjct: 394 MKNEGYSEGYAYDHDQPDAFSGQDYFPEAM 423
>ref|NP_520459.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
emb|CAD16045.1| (AL646069) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
Length = 449
Score = 192 bits (489), Expect = 4e-48
Identities = 121/377 (32%), Positives = 197/377 (52%), Gaps = 23/377 (6%)
Query: 1 MSLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYM 60
M L L P S+++ +GQ+HL+G PL A S +GPPGVGKT+LA+++A
Sbjct: 14 MPLAERLRPHSVDEVIGQQHLLGPSKPLRVAFASGEPHSMILWGPPGVGKTTLARLMADA 73
Query: 61 LERPILLFNATDFKLEDLR---LKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKD 117
+ + +A ++D+R + + ++ + +VF+DE HR NK+QQ+ LP +E
Sbjct: 74 FDAEFIALSAVLSGVKDIRDAVERAEQFRAHGRRTLVFVDEVHRFNKSQQDAFLPHVESG 133
Query: 118 HALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKK-QIEPGAKTY 176
+GA+T++P++ ++ A+ SR+ ++ L L+ +L +L +A L + P A
Sbjct: 134 LFTFIGATTENPSFEVNGALLSRAAVYVLKSLSDDELKQLAERARQELGGLEWAPAAVDA 193
Query: 177 LLNNSAGDARALLNLLDL---------SAKIEDPITLKTLQSLRPHSLNDGSYSDDTHYN 227
++ ++ GD R LLN +++ ++ I L S +L D Y+
Sbjct: 194 VVASADGDGRKLLNNIEIVTRAARAQAGSETVPAIDEALLASALSENLRRFDKGGDAFYD 253
Query: 228 LTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASC 287
SAL KS+RGSD +A++Y+ R++ GG +P ++ARR+V A EDIG A+P A +
Sbjct: 254 QISALHKSVRGSDPDAALYWFCRMLDGGADPRYLARRIVRMAWEDIGLADPRAARITLDA 313
Query: 288 LFAVKQIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHL----- 342
+++G PE + L+Q +IYLA +PKSN Y A N A V +P HL
Sbjct: 314 AETYERLGSPEGELALAQALIYLAIAPKSNAGYNAYNAARAFVGHDKSRAVPVHLRNAPT 373
Query: 343 -----LPNAKDYLYPHD 354
L Y Y HD
Sbjct: 374 RLMKELGYGHAYRYAHD 390
>ref|NP_637341.1| (NC_003902) ATPase [Xanthomonas campestris pv. campestris str. ATCC
33913]
gb|AAM41265.1| (AE012302) ATPase [Xanthomonas campestris pv. campestris str. ATCC
33913]
Length = 428
Score = 191 bits (485), Expect = 1e-47
Identities = 127/414 (30%), Positives = 212/414 (50%), Gaps = 31/414 (7%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERPIL 66
+ P++L++ +GQ+ L+ D+ L +A++S +GPPG GKT+LA ++A+ +
Sbjct: 1 MRPRTLDEMVGQKRLLAADSALRRAVESGRVHSMILWGPPGCGKTTLALLLAHYADAEFK 60
Query: 67 LFNATDFKLEDLRLKLKNYQNTLL---KPVVFIDETHRLNKTQQEFLLPIMEKDHALILG 123
+A L D+R L + V+F+DE HR NK QQ+ LP +E+ L +G
Sbjct: 61 AISAVLSGLPDVRQVLAEAAQRFASGRRTVLFVDEVHRFNKAQQDAFLPHIERGTILFVG 120
Query: 124 ASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKK-------QIEPGAKTY 176
A+T++P++ L+ A+ SR + L ++ D+ +AL ++ Q+ +
Sbjct: 121 ATTENPSFELNSALLSRCRVHVLEGVSPQDIVEALQRALHDAERGLGQETIQVSEASLLE 180
Query: 177 LLNNSAGDARALLNLLDLSAKIED----PITLKTLQSLRPHSLNDGSYSDDTHYNLTSAL 232
+ + + GD R L LL+++A++ IT +TL + + + Y+ SAL
Sbjct: 181 IASAADGDVRRALTLLEIAAELATGEGGEITPRTLLQVLADRTRRFDKNGEQFYDQISAL 240
Query: 233 IKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFAVK 292
KS+R S+ +A++Y+L R++ GG +P ++ARRL A EDIG A+P A ++A +
Sbjct: 241 HKSVRSSNPDAALYWLTRMLDGGCDPAYLARRLTRMAIEDIGLADPRAQSMALEAWDIYE 300
Query: 293 QIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHL---------- 342
++G PE + +Q V+YLA + KSN Y A NQA V+ +P HL
Sbjct: 301 RLGSPEGELAFAQLVLYLASTAKSNAGYAAFNQAKAEVRASGTQEVPLHLRNAPTKLMKT 360
Query: 343 LPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGI------GFEKTLLEWLDKIR 390
L +DY Y HD G + D P D + + G E L E LD++R
Sbjct: 361 LGYGQDYQYDHDAEGGIALDQTGFP-DAMGERVYYNPVPRGMEIKLKEKLDRLR 413
>ref|NP_569079.1| (NM_130395) Werner helicase interacting protein, isoform 2;
putative helicase RUVBL [Homo sapiens]
gb|AAH18923.1|AAH18923 (BC018923) Similar to Werner helicase interacting protein [Homo
sapiens]
Length = 640
Score = 190 bits (483), Expect = 2e-47
Identities = 149/419 (35%), Positives = 209/419 (49%), Gaps = 50/419 (11%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLE 62
L + P +L+D+ GQ VG+D L L++ P +GPPG GKT+LA IIA +
Sbjct: 227 LADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNEIPSLILWGPPGCGKTTLAHIIASNSK 286
Query: 63 RPILLF---NATDFKLEDLRLKLKNYQNTLL----KPVVFIDETHRLNKTQQEFLLPIME 115
+ + F +AT+ K D+R +K QN K ++FIDE HR NK+QQ ++
Sbjct: 287 KHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQ-VNAALLS 345
Query: 116 KDHALILGASTQDPNYS-LSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIEPGAK 174
+ ++L + + L AI S I L +D + + + IE A
Sbjct: 346 RCRVIVLEKLPVEAMVTILMRAINSLG-IHVLDSSRPTDPLSHSSNSSSEPAMFIEDKAV 404
Query: 175 TYLLNNSAGDARALLNLLDLSA----KIEDPITLKTLQSLRP-----------------H 213
L S GDARA LN L L+ K+ QS P H
Sbjct: 405 DTLAYLSDGDARAGLNGLQLAVLARLSSRKMFCKKSGQSYSPSRVLITENDVKEGLQRSH 464
Query: 214 SLNDGSYSDDTHYNLTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDI 273
L D + + HYN SAL KS+RGSD+NAS+Y+LAR++ GGE+P ++ARRLV FASEDI
Sbjct: 465 ILYDRA--GEEHYNCISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDI 522
Query: 274 GNANPNALNLAASCLFAVKQIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQ-- 331
G A+P+AL A + IG PE ++L+QCV+Y A +PKS Y A N C++
Sbjct: 523 GLADPSALTQAVAAYQGCHFIGMPECEVLLAQCVVYFARAPKSIEVYSAYNNVKACLRNH 582
Query: 332 KGSLYPIPKHL----------LPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEK 380
+G L P+P HL L K Y Y Y+ V Q+YL + L +G+ F K
Sbjct: 583 QGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNPMYSEPVDQEYLPEEL-----RGVDFFK 636
>ref|NP_642336.1| (NC_003919) ATPase [Xanthomonas axonopodis pv. citri str. 306]
gb|AAM36872.1| (AE011836) ATPase [Xanthomonas axonopodis pv. citri str. 306]
Length = 429
Score = 187 bits (476), Expect = 1e-46
Identities = 128/416 (30%), Positives = 214/416 (50%), Gaps = 35/416 (8%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERPIL 66
+ P++L++ +GQ+ L+ D+ L +A++S +GPPG GKT+LA ++A+ +
Sbjct: 1 MRPRTLDEMVGQKRLLAPDSALRRAVESGRVHSMILWGPPGCGKTTLALLLAHYADAEFK 60
Query: 67 LFNATDFKLEDLRLKLKNYQNTLL---KPVVFIDETHRLNKTQQEFLLPIMEKDHALILG 123
+A L D+R L + V+F+DE HR NK QQ+ LP +E+ L +G
Sbjct: 61 AISAVLSGLPDVRQVLAEAAQRFAGGRRTVLFVDEVHRFNKAQQDAFLPHIERGTILFVG 120
Query: 124 ASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIEPGAKTYLLNNSA- 182
A+T++P++ L+ A+ SR + L ++ D+ +AL ++ + GA+T ++ ++
Sbjct: 121 ATTENPSFELNSALLSRCRVHVLEGVSPQDIVEALQRALRDAERGL--GAETIQVSEASL 178
Query: 183 --------GDARALLNLLDLSAKIE----DPITLKTLQSLRPHSLNDGSYSDDTHYNLTS 230
GD R L LL+++A++ IT +TL + + + Y+ S
Sbjct: 179 LEIASAADGDVRRALTLLEIAAELAAGEGGEITPQTLLQVLADRTRRFDKNGEQFYDQIS 238
Query: 231 ALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFA 290
AL KS+R S+ +A++Y+L R++ GG +P ++ARRL A EDIG A+P A ++A
Sbjct: 239 ALHKSVRSSNPDAALYWLTRMLDGGCDPAYLARRLTRMAIEDIGLADPRAQSMALEAWDI 298
Query: 291 VKQIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHL-------- 342
+++G PE + +Q V+YLA + KSN Y A NQA V+ +P HL
Sbjct: 299 YERLGSPEGELAFAQLVLYLASTAKSNAGYAAFNQAKAEVRATGTQEVPLHLRNAPTKLM 358
Query: 343 --LPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGI------GFEKTLLEWLDKIR 390
L +DY Y H G + D P D + + G E L E LD++R
Sbjct: 359 KTLGYGQDYQYDHHAEGGIALDQTGFP-DAMGERVYYNPVPRGMEIKLKEKLDRLR 413
>ref|NP_298742.1| (NC_002488) conserved hypothetical protein [Xylella fastidiosa
9a5c]
pir||F82679 conserved hypothetical protein XF1453 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF84262.1|AE003975_5 (AE003975) conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 429
Score = 172 bits (435), Expect = 8e-42
Identities = 126/413 (30%), Positives = 208/413 (49%), Gaps = 29/413 (7%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERPIL 66
+ P++L + +GQ+ L+ D L +A+ S H +GPPG GKT+L+ ++A ++
Sbjct: 1 MRPRTLHEMVGQKRLLAPDRALHRAVASGHVHSMILWGPPGCGKTTLSLLLAQYIDAEFH 60
Query: 67 LFNATDFKLEDLRLKLKNYQNTLL---KPVVFIDETHRLNKTQQEFLLPIMEKDHALILG 123
+A L ++R L + V+F+DE HR N QQ+ LP +E+ + +G
Sbjct: 61 AVSAVLSGLPEVRQILAEAAQRFSEGRRTVLFVDEVHRFNNMQQDAFLPHIERGSIIFVG 120
Query: 124 ASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALT-----LLKKQIEPGAKTYLL 178
A+T++P++ L+ A+ SR + L ++ D+ +AL L +++IE + L
Sbjct: 121 ATTENPSFELNSALLSRCRVHVLEAVSSQDIVVALQRALQDTERGLGEQKIEVSEASLLE 180
Query: 179 NNSA--GDARALLNLLDLSAKIEDPITLKTLQSLRPHSLNDGSYSDDTH----YNLTSAL 232
A GD R L LL+++A++ + L L D S D Y+ SAL
Sbjct: 181 IAKAADGDVRRALTLLEIAAELAQDEDGQMTADLLSQVLADRSRRFDKRGEQFYDQISAL 240
Query: 233 IKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFAVK 292
KS+R S+ +A++Y+L R++ GG +P ++ARRL A EDIG A+P A ++A +
Sbjct: 241 HKSVRSSNPDAALYWLLRMLDGGCDPIYLARRLTRMAIEDIGLADPRAQSMALEAWDIYE 300
Query: 293 QIGYPEARIILSQCVIYLACSPKSNTAYRAINQALDCVQKGSLYPIPKHL---------- 342
++G PE + +Q V+YLA + KSN Y A N A + +++ +P HL
Sbjct: 301 RLGSPEGDLAFAQLVLYLASTAKSNAGYVAFNVAKEDIRQTGTQDVPLHLRNAPTRLMKS 360
Query: 343 LPNAKDYLYPHDYNGYVKQDYLEKPLDL---VSSQGI--GFEKTLLEWLDKIR 390
L +Y Y HD V + P L + Q + G E L E LD++R
Sbjct: 361 LGYGIEYQYDHDAENGVALEQTCFPDALGERIYYQPVSRGLEIKLKEKLDQLR 413
>pir||S43134 hypothetical protein - Coxiella burnetii
emb|CAA53291.1| (X75627) orf 353 [Coxiella burnetii]
Length = 353
Score = 167 bits (422), Expect = 3e-40
Identities = 109/305 (35%), Positives = 169/305 (54%), Gaps = 33/305 (10%)
Query: 93 VVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKS 152
++F+DE H NK+QQ+ LP +EK ++GA+T++P++ L++A+ SR+ ++ L L ++
Sbjct: 14 ILFVDEVHGFNKSQQDAFLPHVEKGTITLIGATTENPSFQLNNALLSRTRVYVLKQLTEA 73
Query: 153 DLDRLCAKALT-----LLKKQIE--PGAKTYLLNNSAGDARALLNLLDLSAK-------- 197
DL + AL L KK +E + ++ + GDAR LNLL++ A
Sbjct: 74 DLLSILENALANEERGLGKKALEIPEPLRRRIVQFADGDARQCLNLLEIIADFALEENGR 133
Query: 198 --IEDPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSDENASIYYLARLIAGG 255
++D + K L L + Y+ SAL KS+RGSD +AS+Y+L+RL+ GG
Sbjct: 134 FVVDDGLIDKVLTE----GLRRFDKRGEAFYDQISALHKSVRGSDPDASLYWLSRLLDGG 189
Query: 256 ENPEFIARRLVIFASEDIGNANPNALNLAASCLFAVKQIGYPEARIILSQCVIYLACSPK 315
+P ++ARR+V ASEDIGNA+P AL LA +++G PE + ++Q V+Y AC+ K
Sbjct: 190 CDPFYVARRVVRMASEDIGNADPRALQLALDAWETFERLGTPEGELAIAQAVVYCACAAK 249
Query: 316 SNTAYRAINQALDCVQKGSLYPIPKHL----------LPNAKDYLYPHD-YNGYVK-QDY 363
SN Y+A N A V+ +P +L L KDY Y HD +G+ DY
Sbjct: 250 SNAVYKAFNAASREVKSTGSLEVPLYLRNAPTRLMKSLDYGKDYRYAHDESDGFAAGVDY 309
Query: 364 LEKPL 368
L + L
Sbjct: 310 LPESL 314
>gb|AAD00283.1| (U78602) hypothetical protein [Streptococcus mutans]
Length = 237
Score = 140 bits (353), Expect = 3e-32
Identities = 88/229 (38%), Positives = 134/229 (58%), Gaps = 20/229 (8%)
Query: 43 YGPPGVGKTSLAQIIAYMLERPILLFNATDF---KLEDLRLKLKNYQNTLLKPVVFIDET 99
YGPPG+GKTS+A IA + FNAT +L+++ + K + L V+ +DE
Sbjct: 13 YGPPGIGKTSIASAIAGTTKFAFRTFNATTDTKKRLQEIAEEAK-FSGGL---VLLLDEI 68
Query: 100 HRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCA 159
HRL+KT+Q+FLLP++E +++GA+T++P +S++ AIRSR IFEL PL+ D+ +
Sbjct: 69 HRLDKTKQDFLLPLLENGQIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKKAMQ 128
Query: 160 KALTLLKK------QIEPGAKTYLLNNSAGDARALLNLLDLSAKIEDP-------ITLKT 206
ALT ++ +++ A ++ + GD R+ N LDL+ P ITL T
Sbjct: 129 VALTDTERGFDFEVKLDDDALDFIATATNGDLRSAYNSLDLAIMSTQPDDNGSRHITLDT 188
Query: 207 LQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSDENASIYYLARLIAGG 255
+++ S D HY++ SAL KS+RGSD NAS++Y ARLI G
Sbjct: 189 VENSLQRSYITMDKDGDAHYDVLSALQKSIRGSDVNASLHYAARLIEAG 237
>dbj|BAB15383.1| (AK026179) unnamed protein product [Homo sapiens]
Length = 281
Score = 130 bits (328), Expect = 2e-29
Identities = 96/245 (39%), Positives = 126/245 (51%), Gaps = 40/245 (16%)
Query: 169 IEPGAKTYLLNNSAGDARALLNLLDLSA----KIEDPITLKTLQSLRP------------ 212
IE A L S GDARA LN L L+ K+ QS P
Sbjct: 40 IEDKAVDTLAYLSDGDARAGLNGLQLAVLARLSSRKMFCKKSGQSYSPSRVLITENDVKE 99
Query: 213 -----HSLNDGSYSDDTHYNLTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVI 267
H L D + + HYN SAL KS+RGSD+NAS+Y+LAR++ GGE+P ++ARRLV
Sbjct: 100 GLQRSHILYDRA--GEEHYNCISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLVR 157
Query: 268 FASEDIGNANPNALNLAASCLFAVKQIGYPEARIILSQCVIYLACSPKSNTAYRAINQAL 327
FAS DIG A+P+AL A + IG PE ++L+QCV+Y A +PKS Y A N
Sbjct: 158 FASGDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQCVVYFARAPKSIEVYSAYNNVK 217
Query: 328 DCVQ--KGSLYPIPKHL----------LPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQG 375
C++ +G L P+P HL L K Y Y Y+ V Q+YL + L +G
Sbjct: 218 ACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNPMYSEPVDQEYLPEEL-----RG 272
Query: 376 IGFEK 380
+ F K
Sbjct: 273 VDFFK 277
>emb|CAA74750.1| (Y14394) helicase-like protein [Helicobacter pylori]
Length = 54
Score = 111 bits (278), Expect = 1e-23
Identities = 49/54 (90%), Positives = 54/54 (99%)
Query: 338 IPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN 391
+PKHLLP++KDYLYPHDYNGY+KQDYLEKPL+LVSSQGIGFEKTLLEWLDKIRN
Sbjct: 1 MPKHLLPHSKDYLYPHDYNGYIKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN 54
>emb|CAC00808.1| (AL390935) probable hypothetical 48.4 Kd protein [Leishmania major]
Length = 190
Score = 84.7 bits (208), Expect = 2e-15
Identities = 43/132 (32%), Positives = 80/132 (60%), Gaps = 3/132 (2%)
Query: 11 SLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERPILLFNA 70
++++ +GQ+HL+G PL A +S +GPPGVGKT+LA+++A + + +A
Sbjct: 21 NIDEVIGQQHLLGPGKPLRVAFESGEPHSMILWGPPGVGKTTLARLMADAFDAEFIALSA 80
Query: 71 TDFKLEDLR---LKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQ 127
++D+R + + Y+ + +VF+DE HR NK+QQ+ LP +E +GA+T+
Sbjct: 81 VLSGVKDIREAVERAEQYRAHGRRTLVFVDEVHRFNKSQQDAFLPHVESGLFTFIGATTE 140
Query: 128 DPNYSLSHAIRS 139
+P++ ++ A+ S
Sbjct: 141 NPSFEVNGALLS 152
>ref|NP_224590.1| (NC_000922) Holliday Junction Helicase [Chlamydophila pneumoniae
CWL029]
pir||D72084 holliday junction helicase - Chlamydophila pneumoniae (strain
CWL029)
gb|AAD18533.1| (AE001623) Holliday Junction Helicase [Chlamydophila pneumoniae
CWL029]
Length = 337
Score = 79.7 bits (195), Expect = 5e-14
Identities = 68/210 (32%), Positives = 99/210 (46%), Gaps = 29/210 (13%)
Query: 7 LNPKSLEDFLGQEHLVGK-DAPLFKALQSKHFP-HAFFYGPPGVGKTSLAQIIAYMLERP 64
L PK LE+F GQ HL + D L ALQ P H F+GPPG+GKTSLA I+AY + +
Sbjct: 18 LRPKGLEEFYGQHHLKERLDLFLCAALQRGEVPGHCLFFGPPGLGKTSLAHIVAYTVGKG 77
Query: 65 ILLFNATD-FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHA---- 119
++L + K DL L + Q V FIDE HR+ K +E+L ME
Sbjct: 78 LVLASGPQLIKPSDLLGLLTSLQE---GDVFFIDEIHRMGKVAEEYLYSAMEDFKVDITI 134
Query: 120 ----------------LILGASTQDPNYSLSHAIRSR-SFIFELTPLNKSDLDRLCAKAL 162
++GA+T+ + LS +R+R +F L+ + DL + ++
Sbjct: 135 DSGPGARSVRVDLAPFTLVGATTR--SGMLSEPLRARFAFSARLSYYSDQDLKEILVRSS 192
Query: 163 TLLKKQIEPGAKTYLLNNSAGDARALLNLL 192
LL + + A + S G R +LL
Sbjct: 193 HLLGIEADSSALLEIAKRSRGTPRLANHLL 222
>ref|NP_300447.1| (NC_002491) holliday junction helicase [Chlamydophila pneumoniae
J138]
ref|NP_444913.1| (NC_002179) Holliday junction DNA helicase RuvB [Chlamydophila
pneumoniae AR39]
sp|Q9Z8F3|RUVB_CHLPN Holliday junction DNA helicase ruvB
pir||A81586 Holliday junction DNA helicase RuvB CP0365 [imported] -
Chlamydophila pneumoniae (strain AR39)
gb|AAF38214.1| (AE002198) Holliday junction DNA helicase RuvB [Chlamydophila
pneumoniae AR39]
dbj|BAA98598.1| (AP002546) holliday junction helicase [Chlamydophila pneumoniae
J138]
Length = 337
Score = 79.7 bits (195), Expect = 5e-14
Identities = 68/210 (32%), Positives = 99/210 (46%), Gaps = 29/210 (13%)
Query: 7 LNPKSLEDFLGQEHLVGK-DAPLFKALQSKHFP-HAFFYGPPGVGKTSLAQIIAYMLERP 64
L PK LE+F GQ HL + D L ALQ P H F+GPPG+GKTSLA I+AY + +
Sbjct: 18 LRPKGLEEFYGQHHLKERLDLFLCAALQRGEVPGHCLFFGPPGLGKTSLAHIVAYTVGKG 77
Query: 65 ILLFNATD-FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHA---- 119
++L + K DL L + Q V FIDE HR+ K +E+L ME
Sbjct: 78 LVLASGPQLIKPSDLLGLLTSLQE---GDVFFIDEIHRMGKVAEEYLYSAMEDFKVDITI 134
Query: 120 ----------------LILGASTQDPNYSLSHAIRSR-SFIFELTPLNKSDLDRLCAKAL 162
++GA+T+ + LS +R+R +F L+ + DL + ++
Sbjct: 135 DSGPGARSVRVDLAPFTLVGATTR--SGMLSEPLRTRFAFSARLSYYSDQDLKEILVRSS 192
Query: 163 TLLKKQIEPGAKTYLLNNSAGDARALLNLL 192
LL + + A + S G R +LL
Sbjct: 193 HLLGIEADSSALLEIAKRSRGTPRLANHLL 222
>ref|NP_275384.1| (NC_000916) replication factor C, small subunit
[Methanothermobacter thermautotrophicus]
[Methanothermobacter thermautotrophicus str. Delta H]
pir||B69130 replication factor C, small subunit - Methanobacterium
thermoautotrophicum (strain Delta H)
gb|AAB84747.1| (AE000811) replication factor C, small subunit [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 321
Score = 77.0 bits (188), Expect = 3e-13
Identities = 76/277 (27%), Positives = 124/277 (44%), Gaps = 39/277 (14%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLA-----QIIAYMLER 63
P+ L+D +GQEH++ + L + ++ K P+ F GP GVGKT+ A +I+ +
Sbjct: 14 PQKLDDIVGQEHIIPR---LKRYVEEKSMPNLMFTGPAGVGKTTAALALAREILGEYWRQ 70
Query: 64 PILLFNATDFK-LEDLRLKLKNYQNTLLKPV------VFIDETHRLNKTQQEFLLPIME- 115
L NA+D + ++ +R +KN+ LKPV +F+DE + K Q L ME
Sbjct: 71 NFLELNASDARGIDTVRTSIKNF--CRLKPVGAPFRIIFLDEVDNMTKDAQHALRREMEM 128
Query: 116 --KDHALILGASTQDPNYS--LSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIEP 171
K + IL NYS + I+SR IF PL + + + E
Sbjct: 129 YTKTSSFILSC-----NYSSKIIDPIQSRCAIFRFLPLKGHQIIKRLEYIAEKENLEYEA 183
Query: 172 GAKTYLLNNSAGDARALLNLLDLSAKIEDPITLKTLQSL----RPHSLN-------DGSY 220
A ++ + GD R +NLL +A + + IT ++ + RP + DG +
Sbjct: 184 HALETIVYFAEGDLRKAINLLQSAASLGEKITESSIYDVVSRARPKDVRKMIKTILDGKF 243
Query: 221 SDDTHYNLTSALIKSLRGSDENASIYY-LARLIAGGE 256
+ +++ + G D IY L+RL GE
Sbjct: 244 MEARDMLREIMVLQGISGEDMVTQIYQELSRLAMEGE 280
>ref|NP_296689.1| (NC_002620) Holliday junction DNA helicase RuvB [Chlamydia
muridarum]
sp|Q9PKZ8|RUVB_CHLMU Holliday junction DNA helicase ruvB
pir||E81717 Holliday junction DNA helicase RuvB TC0310 [imported] - Chlamydia
muridarum (strain Nigg)
gb|AAF39175.1| (AE002298) Holliday junction DNA helicase RuvB [Chlamydia
muridarum]
Length = 330
Score = 75.5 bits (184), Expect = 1e-12
Identities = 68/210 (32%), Positives = 99/210 (46%), Gaps = 29/210 (13%)
Query: 7 LNPKSLEDFLGQEHLVGK-DAPLFKALQSKHFP-HAFFYGPPGVGKTSLAQIIAYMLERP 64
L PK L +F GQ+ L + D L A+Q K P H FYGPPG+GKTSLA I+A + +
Sbjct: 18 LRPKKLTEFYGQKQLKERLDLFLRAAVQRKEVPGHCLFYGPPGLGKTSLAHIMANTVGKG 77
Query: 65 ILLFNATD-FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEK---DHAL 120
+++ + K DL L Q V FIDE HR+ KT +E+L P ME D L
Sbjct: 78 LVIASGPQLLKPSDLIGLLTGLQE---GDVFFIDEIHRMGKTAEEYLYPAMEDFKVDITL 134
Query: 121 -----------------ILGASTQDPNYSLSHAIRSR-SFIFELTPLNKSDLDRLCAKAL 162
++GA+T+ LS +R+R +F + N+ DL + +++
Sbjct: 135 DSGPGARSVRLDLAPFTLVGATTRAG--MLSEPLRTRFAFTGRVDYYNEEDLVAILSRSA 192
Query: 163 TLLKKQIEPGAKTYLLNNSAGDARALLNLL 192
LL + + + G R NLL
Sbjct: 193 QLLSIEANKETLLEIARRARGTPRLANNLL 222
>ref|NP_360170.1| (NC_003103) holliday junction DNA helicase RuvB [Rickettsia
conorii]
gb|AAL03071.1| (AE008615) holliday junction DNA helicase RuvB [Rickettsia conorii]
Length = 354
Score = 73.9 bits (180), Expect = 3e-12
Identities = 64/211 (30%), Positives = 97/211 (45%), Gaps = 31/211 (14%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSK--HFPHAFFYGPPGVGKTSLAQIIAYMLERP 64
+ P L++F+GQ+ + + KA +S+ H H FYGPPG+GKT+LA+II+ +
Sbjct: 30 IRPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGLGKTTLAKIISNEIGGN 89
Query: 65 ILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEK-DHA 119
F +T K+ DL L N + V+FIDE HRLN +E L P ME +
Sbjct: 90 ---FKSTSGPAILKVADLAAILTNLEK---NDVLFIDEIHRLNTAVEEVLYPAMEDFELD 143
Query: 120 LILGASTQD-------PNYS----------LSHAIRSRSFI-FELTPLNKSDLDRLCAKA 161
+I+G + P ++ LS+ +R R I L N +L ++ +A
Sbjct: 144 IIIGEGSAARSVKITLPKFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNTGELKKVLNRA 203
Query: 162 LTLLKKQIEPGAKTYLLNNSAGDARALLNLL 192
LL + + S G R L LL
Sbjct: 204 SKLLDIDLTDSGSEEIAKRSRGTPRIALRLL 234
>sp|Q92I87|RUVB_RICCN Holliday junction DNA helicase ruvB
Length = 342
Score = 73.9 bits (180), Expect = 3e-12
Identities = 64/211 (30%), Positives = 97/211 (45%), Gaps = 31/211 (14%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSK--HFPHAFFYGPPGVGKTSLAQIIAYMLERP 64
+ P L++F+GQ+ + + KA +S+ H H FYGPPG+GKT+LA+II+ +
Sbjct: 18 IRPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGLGKTTLAKIISNEIGGN 77
Query: 65 ILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEK-DHA 119
F +T K+ DL L N + V+FIDE HRLN +E L P ME +
Sbjct: 78 ---FKSTSGPAILKVADLAAILTNLEK---NDVLFIDEIHRLNTAVEEVLYPAMEDFELD 131
Query: 120 LILGASTQD-------PNYS----------LSHAIRSRSFI-FELTPLNKSDLDRLCAKA 161
+I+G + P ++ LS+ +R R I L N +L ++ +A
Sbjct: 132 IIIGEGSAARSVKITLPKFTLIGATTRLGLLSNPLRDRFGIPMRLNFYNTGELKKVLNRA 191
Query: 162 LTLLKKQIEPGAKTYLLNNSAGDARALLNLL 192
LL + + S G R L LL
Sbjct: 192 SKLLDIDLTDSGSEEIAKRSRGTPRIALRLL 222
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 73.6 bits (179), Expect = 4e-12
Identities = 74/265 (27%), Positives = 118/265 (43%), Gaps = 42/265 (15%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKA--LQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP 64
L PKSL++F+GQE++ K + +A ++ + H GPPG+GKT+LA IIA L+
Sbjct: 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN 78
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEK------- 116
I + + K D+ L + + V+FIDE HRLNK +E L +E
Sbjct: 79 IHVTSGPVLVKQGDMAAILTSLER---GDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMI 135
Query: 117 -------------DHALILGASTQDPNYSLSHAIRSR-SFIFELTPLNKSDLDRLCAKAL 162
++GA+T+ + LS +RSR I EL +L + +A
Sbjct: 136 GKGPSAKSIRIDIQPFTLVGATTR--SGLLSSPLRSRFGIILELDFYTVKELKEIIKRAA 193
Query: 163 TLLKKQIEPGAKTYLLNNSAGDARALLNL---------LDLSAKIEDPITLKTLQSLRPH 213
+L+ +IE A + S G R + L + + +I I LKT++ L
Sbjct: 194 SLMDVEIEDAAAEMIAKRSRGTGRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLN-- 251
Query: 214 SLNDGSYSDDTHYNLTSALIKSLRG 238
D D+ + +I+ RG
Sbjct: 252 --IDDEGLDEFDRKILKTIIEIYRG 274
>ref|NP_229528.1| (NC_000853) Holliday junction DNA helicase [Thermotoga maritima]
sp|Q56313|RUVB_THEMA Holliday junction DNA helicase ruvB
pir||A72217 Holliday junction DNA helicase - Thermotoga maritima (strain MSB8)
pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
gb|AAB03727.1| (U38840) RuvB protein [Thermotoga maritima]
gb|AAD36795.1|AE001812_5 (AE001812) Holliday junction DNA helicase [Thermotoga maritima]
Length = 334
Score = 73.2 bits (178), Expect = 5e-12
Identities = 74/265 (27%), Positives = 118/265 (43%), Gaps = 42/265 (15%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKA--LQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP 64
L PKSL++F+GQE++ K + +A ++ + H GPPG+GKT+LA IIA L+
Sbjct: 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN 78
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEK------- 116
I + + K D+ L + + V+FIDE HRLNK +E L +E
Sbjct: 79 IHVTSGPVLVKQGDMAAILTSLER---GDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMI 135
Query: 117 -------------DHALILGASTQDPNYSLSHAIRSR-SFIFELTPLNKSDLDRLCAKAL 162
++GA+T+ + LS +RSR I EL +L + +A
Sbjct: 136 GKGPSAKSIRIDIQPFTLVGATTR--SGLLSSPLRSRFGIILELDFYTVKELKEIIKRAA 193
Query: 163 TLLKKQIEPGAKTYLLNNSAGDARALLNL---------LDLSAKIEDPITLKTLQSLRPH 213
+L+ +IE A + S G R + L + + +I I LKT++ L
Sbjct: 194 SLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLN-- 251
Query: 214 SLNDGSYSDDTHYNLTSALIKSLRG 238
D D+ + +I+ RG
Sbjct: 252 --IDDEGLDEFDRKILKTIIEIYRG 274
>ref|NP_207850.1| (NC_000915) Holliday junction DNA helicase (ruvB) [Helicobacter
pylori 26695]
sp|O25699|RUVB_HELPY Holliday junction DNA helicase ruvB
pir||C64652 DNA-binding protein ruvB - Helicobacter pylori (strain 26695)
gb|AAD08100.1| (AE000613) Holliday junction DNA helicase (ruvB) [Helicobacter
pylori 26695]
Length = 336
Score = 72.4 bits (176), Expect = 8e-12
Identities = 67/211 (31%), Positives = 94/211 (43%), Gaps = 31/211 (14%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAYMLERP 64
L P EDF+GQE + A + + H F+GPPG+GKTS++ IIA +E
Sbjct: 21 LRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHAL--- 120
I + A K DL L N Q K ++FIDE HRL+ +E L P ME D L
Sbjct: 81 IKITAAPMIEKSGDLAAILTNLQ---AKDILFIDEIHRLSPAIEEVLYPAME-DFRLDII 136
Query: 121 ------------------ILGASTQDPNYSLSHAIRSR-SFIFELTPLNKSDLDRLCAKA 161
++GA+T+ LS+ +R R F + N S+L + KA
Sbjct: 137 IGSGPAAQTIKIDLPPFTLIGATTRAG--MLSNPLRDRFGMSFRMQFYNPSELALIIKKA 194
Query: 162 LTLLKKQIEPGAKTYLLNNSAGDARALLNLL 192
L + I+ + + S G R L LL
Sbjct: 195 AVKLNQDIKQESADEIAKRSRGTPRIALRLL 225
>sp|O14003|RFC3_SCHPO Activator 1 40 kDa subunit (Replication factor C 40 kDa subunit)
(Replication factor C3)
pir||T43410 replication factor C chain Rfc3 - fission yeast
(Schizosaccharomyces pombe)
emb|CAB38106.1| (AJ012839) replication factor C subunit [Schizosaccharomyces pombe]
dbj|BAA82745.1| (AB017039) Rfc3 [Schizosaccharomyces pombe]
dbj|BAA82746.1| (AB017040) Rfc3 [Schizosaccharomyces pombe]
Length = 342
Score = 72.4 bits (176), Expect = 8e-12
Identities = 57/216 (26%), Positives = 97/216 (44%), Gaps = 14/216 (6%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP---- 64
P +LED + + ++ + L K + S PH FYGPPG GKTS A + P
Sbjct: 31 PANLEDVVSHKDII---STLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYGPNYRN 87
Query: 65 -ILLFNATDFK-LEDLRLKLKNYQNT-----LLKPVVFIDETHRLNKTQQEFLLPIMEKD 117
++ NA+D + ++ +R ++KN+ +T ++ +DE + Q L ++EK
Sbjct: 88 QLMELNASDDRGIDAVREQIKNFASTRQIFASTFKMIILDEADAMTLAAQNALRRVIEKY 147
Query: 118 HALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIEPGAKTYL 177
+ + +S AI+SR F PL ++++ + I+P AK +
Sbjct: 148 TKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSEHCNIDPDAKMAV 207
Query: 178 LNNSAGDARALLNLLDLSAKIEDPITLKTLQSLRPH 213
L S GD R LN+L D I + + + H
Sbjct: 208 LRLSKGDMRKALNILQACHAAYDHIDVSAIYNCVGH 243
>ref|NP_604114.1| (NC_003454) Holliday junction DNA helicase ruvB [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gb|AAL95413.1| (AE010627) Holliday junction DNA helicase ruvB [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
Length = 332
Score = 72.0 bits (175), Expect = 1e-11
Identities = 43/112 (38%), Positives = 64/112 (56%), Gaps = 6/112 (5%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKHF--PHAFFYGPPGVGKTSLAQIIAYMLERP 64
L PKS ++++GQE+L K + KA Q ++ H YGPPG+GKT+LA +IA ++
Sbjct: 20 LRPKSFDEYIGQENLKEKMSISIKAAQKRNMVVDHILLYGPPGLGKTTLAGVIANEMKAN 79
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115
+ + + K DL L + + ++FIDE HRLN T +E L P ME
Sbjct: 80 LKITSGPILEKAGDLAAILTSLEEN---DILFIDEIHRLNSTVEEILYPAME 128
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 72.0 bits (175), Expect = 1e-11
Identities = 63/213 (29%), Positives = 102/213 (47%), Gaps = 28/213 (13%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYML-----ER 63
P+ L+D +GQEH+V + L +++ PH F GPPGVGKT+ A +A L
Sbjct: 21 PQRLDDIVGQEHIVKR---LKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRH 77
Query: 64 PILLFNATDFK-LEDLRLKLKNYQNTLLKP-------VVFIDETHRLNKTQQEFLLPIME 115
L NA+D + + +R K+K + T KP ++F+DE L + Q+ L ME
Sbjct: 78 NFLELNASDERGINVIREKVKEFART--KPIGGASFKIIFLDEADALTQDAQQALRRTME 135
Query: 116 KDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQ-----IE 170
+ + + + + + I+SR IF PL D+ AK L + + E
Sbjct: 136 MFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDI----AKRLRYIAENEGLELTE 191
Query: 171 PGAKTYLLNNSAGDARALLNLLDLSAKIEDPIT 203
G + +L + GD R +N+L +A ++ IT
Sbjct: 192 EGLQA-ILYIAEGDMRRAINILQAAAALDKKIT 223
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 72.0 bits (175), Expect = 1e-11
Identities = 74/263 (28%), Positives = 115/263 (43%), Gaps = 38/263 (14%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKA--LQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP 64
L PKSL++F+GQE++ K + +A ++ + H GPPG+GKT+LA IIA L+
Sbjct: 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN 78
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEK---DHAL 120
I + + K D+ L + + V+FIDE HRLNK +E L +E D +
Sbjct: 79 IHVTSGPVLVKQGDMAAILTSLER---GDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMI 135
Query: 121 ILGASTQDPNYS---------------LSHAIRSR-SFIFELTPLNKSDLDRLCAKALTL 164
G S + LS +RSR I EL +L + +A +L
Sbjct: 136 GKGPSAKSIRIDIQPFTLVGATVRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASL 195
Query: 165 LKKQIEPGAKTYLLNNSAGDARALLNL---------LDLSAKIEDPITLKTLQSLRPHSL 215
+ +IE A + S G R + L + + +I I LKT++ L
Sbjct: 196 MDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLN---- 251
Query: 216 NDGSYSDDTHYNLTSALIKSLRG 238
D D+ + +I+ RG
Sbjct: 252 IDDEGLDEFDRKILKTIIEIYRG 274
>ref|NP_223085.1| (NC_000921) HOLLIDAY JUNCTION DNA HELICASE RUVB [Helicobacter
pylori J99]
sp|Q9ZM57|RUVB_HELPJ Holliday junction DNA helicase ruvB
pir||F71942 holliday junction DNA helicase ruvb - Helicobacter pylori (strain
J99)
gb|AAD05938.1| (AE001471) HOLLIDAY JUNCTION DNA HELICASE RUVB [Helicobacter pylori
J99]
Length = 336
Score = 72.0 bits (175), Expect = 1e-11
Identities = 72/240 (30%), Positives = 106/240 (44%), Gaps = 38/240 (15%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAYMLERP 64
L P EDF+GQE + A + + H F+GPPG+GKTS++ IIA +E
Sbjct: 21 LRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHAL--- 120
I + A K DL L N Q K ++FIDE HRL+ +E L P ME D L
Sbjct: 81 IKITAAPMIEKSGDLAAILTNLQ---AKDILFIDEIHRLSPAIEEVLYPAME-DFRLDII 136
Query: 121 ------------------ILGASTQDPNYSLSHAIRSR-SFIFELTPLNKSDLDRLCAKA 161
++GA+T+ LS+ +R R F + + S+L + KA
Sbjct: 137 IGSGPAAQTIKIDLPPFTLIGATTRAG--MLSNPLRDRFGMSFRMQFYSPSELSLIIKKA 194
Query: 162 LTLLKKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIEDPITLKTLQ----SLRPHSLND 217
L + I+ + + S G R L LL ++ D +K S+ H+LN+
Sbjct: 195 AAKLNQDIKEESADEIAKRSRGTPRIALRLL---KRVRDFALVKNSSLMDLSITLHALNE 251
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 72.0 bits (175), Expect = 1e-11
Identities = 73/265 (27%), Positives = 118/265 (43%), Gaps = 42/265 (15%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKA--LQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP 64
L PKSL++F+GQE++ K + +A ++ + H GPPG+GKT+LA IIA L+
Sbjct: 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN 78
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEK------- 116
I + + K D+ L + + V+FIDE HRLNK +E L +E
Sbjct: 79 IHVTSGPVLVKQGDMAAILTSLER---GDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMI 135
Query: 117 -------------DHALILGASTQDPNYSLSHAIRSR-SFIFELTPLNKSDLDRLCAKAL 162
++G++T+ + LS +RSR I EL +L + +A
Sbjct: 136 GKGPSAKSIRIDIQPFTLVGSTTR--SGLLSSPLRSRFGIILELDFYTVKELKEIIKRAA 193
Query: 163 TLLKKQIEPGAKTYLLNNSAGDARALLNL---------LDLSAKIEDPITLKTLQSLRPH 213
+L+ +IE A + S G R + L + + +I I LKT++ L
Sbjct: 194 SLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLN-- 251
Query: 214 SLNDGSYSDDTHYNLTSALIKSLRG 238
D D+ + +I+ RG
Sbjct: 252 --IDDEGLDEFDRKILKTIIEIYRG 274
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 72.0 bits (175), Expect = 1e-11
Identities = 73/265 (27%), Positives = 118/265 (43%), Gaps = 42/265 (15%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKA--LQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP 64
L PKSL++F+GQE++ K + +A ++ + H GPPG+G+T+LA IIA L+
Sbjct: 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGRTTLAHIIASELQTN 78
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEK------- 116
I + + K D+ L + + V+FIDE HRLNK +E L +E
Sbjct: 79 IHVTSGPVLVKQGDMAAILTSLER---GDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMI 135
Query: 117 -------------DHALILGASTQDPNYSLSHAIRSR-SFIFELTPLNKSDLDRLCAKAL 162
++GA+T+ + LS +RSR I EL +L + +A
Sbjct: 136 GKGPSAKSIRIDIQPFTLVGATTR--SGLLSSPLRSRFGIILELDFYTVKELKEIIKRAA 193
Query: 163 TLLKKQIEPGAKTYLLNNSAGDARALLNL---------LDLSAKIEDPITLKTLQSLRPH 213
+L+ +IE A + S G R + L + + +I I LKT++ L
Sbjct: 194 SLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLN-- 251
Query: 214 SLNDGSYSDDTHYNLTSALIKSLRG 238
D D+ + +I+ RG
Sbjct: 252 --IDDEGLDEFDRKILKTIIEIYRG 274
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 70.9 bits (172), Expect = 2e-11
Identities = 73/265 (27%), Positives = 117/265 (43%), Gaps = 42/265 (15%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKA--LQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP 64
L PKSL++F+GQE++ K + +A ++ + H GPPG+GKT+LA IIA L+
Sbjct: 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN 78
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEK------- 116
I + + K D+ L + + V+FIDE HRLNK +E L +E
Sbjct: 79 IHVTSGPVLVKQGDMAAILTSLER---GDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMI 135
Query: 117 -------------DHALILGASTQDPNYSLSHAIRSR-SFIFELTPLNKSDLDRLCAKAL 162
++GA+T+ + LS +RS I EL +L + +A
Sbjct: 136 GKGPSAKSIRIDIQPFTLVGATTR--SGLLSSPLRSAFGIILELDFYTVKELKEIIKRAA 193
Query: 163 TLLKKQIEPGAKTYLLNNSAGDARALLNL---------LDLSAKIEDPITLKTLQSLRPH 213
+L+ +IE A + S G R + L + + +I I LKT++ L
Sbjct: 194 SLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLN-- 251
Query: 214 SLNDGSYSDDTHYNLTSALIKSLRG 238
D D+ + +I+ RG
Sbjct: 252 --IDDEGLDEFDRKILKTIIEIYRG 274
>sp|Q93LP2|RUVB_BURCE Holliday junction DNA helicase ruvB
gb|AAK64609.1| (AY036067) RuvB [Burkholderia cepacia]
Length = 355
Score = 70.5 bits (171), Expect = 3e-11
Identities = 63/213 (29%), Positives = 98/213 (45%), Gaps = 35/213 (16%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKHFP--HAFFYGPPGVGKTSLAQIIAYMLERP 64
L P+ L+D++GQE + G+ +A + + P H +GPPG+GKT+LA IIA E
Sbjct: 29 LRPRQLDDYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGPPGLGKTTLAHIIA--REMG 86
Query: 65 ILLFNATDFKLE---DLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHAL- 120
+ L + LE DL L N + V+FIDE HRL+ +E L P +E D+ +
Sbjct: 87 VNLRQTSGPVLERAGDLAALLTNLE---ANDVLFIDEIHRLSPVVEEILYPALE-DYQID 142
Query: 121 --------------------ILGASTQDPNYSLSHAIRSR-SFIFELTPLNKSDLDRLCA 159
++GA+T+ L++ +R R + L + L R+
Sbjct: 143 IMIGEGPAARSVKLDLQPFTLVGATTRAG--MLTNPLRDRFGIVARLEFYDAEQLSRIVR 200
Query: 160 KALTLLKKQIEPGAKTYLLNNSAGDARALLNLL 192
++ LL QI+P + S G R LL
Sbjct: 201 RSAALLNAQIDPNGALEIAKRSRGTPRIANRLL 233
>ref|NP_219543.1| (NC_000117) Holliday Junction Helicase [Chlamydia trachomatis]
sp|O84044|RUVB_CHLTR Holliday junction DNA helicase ruvB
pir||C71565 DNA-binding protein ruvB - Chlamydia trachomatis (serotype D,
strain UW3/Cx)
gb|AAC67630.1| (AE001278) Holliday Junction Helicase [Chlamydia trachomatis]
Length = 334
Score = 69.3 bits (168), Expect = 7e-11
Identities = 45/112 (40%), Positives = 61/112 (54%), Gaps = 6/112 (5%)
Query: 7 LNPKSLEDFLGQEHLVGK-DAPLFKALQSKHFP-HAFFYGPPGVGKTSLAQIIAYMLERP 64
L PK L +F GQ+ L + D L A+Q P H FYGPPG+GKTSLA I+A + +
Sbjct: 18 LRPKKLTEFCGQKQLKERLDLFLRAAVQRNEVPGHCLFYGPPGLGKTSLAHIMANTIGKG 77
Query: 65 ILLFNATD-FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115
+++ + K DL L Q + FIDE HR+ K +E+L P ME
Sbjct: 78 LVIASGPQLLKPSDLIGLLTGLQE---GDIFFIDEIHRMGKAAEEYLYPAME 126
>ref|NP_014109.1| (NC_001146) RFC is a DNA binding protein and ATPase that acts as a
processivity factor for DNA polymerases delta and
epsilon and loads proliferating cell nuclear antigen
(PCNA) on DNA; Rfc3p [Saccharomyces cerevisiae]
sp|P38629|RFC3_YEAST ACTIVATOR 1 40 KD SUBUNIT (REPLICATION FACTOR C 40 KD SUBUNIT)
pir||A36988 replication factor C chain RFC3 [validated] - yeast (Saccharomyces
cerevisiae)
gb|AAA34969.1| (L18755) replication factor C [Saccharomyces cerevisiae]
gb|AAC49062.1| (U26029) Rfc3p [Saccharomyces cerevisiae]
gb|AAC49110.1| (U23084) replication factor C, 40 kDa subunit [Saccharomyces
cerevisiae]
emb|CAA96207.1| (Z71566) ORF YNL290w [Saccharomyces cerevisiae]
Length = 340
Score = 68.6 bits (166), Expect = 1e-10
Identities = 53/205 (25%), Positives = 97/205 (46%), Gaps = 15/205 (7%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYML-----ER 63
P++L++ GQ ++ + K + PH FYGPPG GKTS +A +
Sbjct: 21 PETLDEVYGQNEVI---TTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSN 77
Query: 64 PILLFNATDFK-LEDLRLKLKNYQNTLLK-----PVVFIDETHRLNKTQQEFLLPIMEKD 117
+L NA+D + ++ +R ++K++ +T ++ +DE + Q L ++E+
Sbjct: 78 MVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERY 137
Query: 118 HALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIEPGAKTYL 177
+ + L+ A+ SR F PL + ++R A L K ++ P A+ L
Sbjct: 138 TKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKAL 197
Query: 178 LNNSAGDARALLNLL-DLSAKIEDP 201
+ S GD R +LN+L A +++P
Sbjct: 198 IELSNGDMRRVLNVLQSCKATLDNP 222
>emb|CAA07618.1| (AJ007712) replication factor C subunit [Arxula adeninivorans]
Length = 338
Score = 68.6 bits (166), Expect = 1e-10
Identities = 65/255 (25%), Positives = 110/255 (42%), Gaps = 31/255 (12%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYML-----ER 63
P +L++ G E ++ + K ++ PH F+GPPG GKT+ +A +
Sbjct: 25 PTTLDEVAGHEGVI---TTIKKFVEEGKLPHLLFHGPPGTGKTTTIIAVARQIYGKNYRN 81
Query: 64 PILLFNATDFK-LEDLRLKLKNYQNTLLK-----PVVFIDETHRLNKTQQEFLLPIMEKD 117
IL NA+D + ++ +R ++K + +T +V +DE + Q L I+EK
Sbjct: 82 MILELNASDERGIDVVRDQIKTFASTRQIFSSGFKLVILDEADAMTNAAQNALRRIIEKY 141
Query: 118 HALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIEPGAKTYL 177
A + + L+ A+ SR F +PL + + A + + P A L
Sbjct: 142 SAHTRFCILANYTHKLNPALLSRCTRFRFSPLKEDAIKHRLAHVIEQESVDLSPEAFQSL 201
Query: 178 LNNSAGDARALLNLL-------DLSAKIEDPITLKTLQSLRPHSLN-------DGSYSDD 223
L+ S+GD R LN+L D +I + + + S RP + DGS+
Sbjct: 202 LHLSSGDMRRALNVLQACYASVDAGEQISEELVYDCVGSPRPADIRTVLQAVLDGSWESA 261
Query: 224 THYNLTSALIKSLRG 238
H T + IK +G
Sbjct: 262 LH---TFSYIKQSKG 273
>ref|NP_294319.1| (NC_001263) Holliday junction DNA helicase [Deinococcus
radiodurans]
sp|Q9X719|RUVB_DEIRA Holliday junction DNA helicase ruvB
pir||D75498 Holliday junction DNA helicase - Deinococcus radiodurans (strain
R1)
gb|AAF10176.1|AE001918_1 (AE001918) Holliday junction DNA helicase [Deinococcus radiodurans]
Length = 333
Score = 67.0 bits (162), Expect = 4e-10
Identities = 45/117 (38%), Positives = 62/117 (52%), Gaps = 5/117 (4%)
Query: 2 SLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAY 59
+L + L PK+L +++GQE L K +A + + H +GPPG+GKT+LA IIAY
Sbjct: 6 NLDAALRPKTLTEYVGQEKLKDKLGVYLQAARGRREALDHTLLFGPPGLGKTTLAHIIAY 65
Query: 60 MLERPILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115
L I + + K DL L N V+FIDE HRL + +E L P ME
Sbjct: 66 ELGVNIRVTSGPAIEKPGDLAAILTNSLEE--GDVLFIDEIHRLGRVAEEHLYPAME 120
>dbj|BAA76366.1| (D84298) ruvB protein [Deinococcus radiodurans]
Length = 311
Score = 67.0 bits (162), Expect = 4e-10
Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 6/117 (5%)
Query: 2 SLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAY 59
+L + L PK+L +++GQE L K +A + + H +GPPG+GKT+LA IIAY
Sbjct: 6 NLDAALRPKTLTEYVGQEKLKDKLGVYLQAARGRREALDHTLLFGPPGLGKTTLAHIIAY 65
Query: 60 MLERPILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115
L I + + K DL + + + V+FIDE HRL + +E L P ME
Sbjct: 66 ELGVNIRVTSGPAIEKPGDLAILTNSLEE---GDVLFIDEIHRLGRVAEEHLYPAME 119
>ref|NP_220767.1| (NC_000963) HOLLIDAY JUNCTION DNA HELICASE RUVB (ruvB) [Rickettsia
prowazekii]
sp|Q9ZDE5|RUVB_RICPR Holliday junction DNA helicase ruvB
pir||A71696 holliday junction DNA helicase ruvb (ruvB) RP386 - Rickettsia
prowazekii
emb|CAA14843.1| (AJ235271) HOLLIDAY JUNCTION DNA HELICASE RUVB (ruvB) [Rickettsia
prowazekii]
Length = 342
Score = 67.0 bits (162), Expect = 4e-10
Identities = 63/211 (29%), Positives = 94/211 (43%), Gaps = 31/211 (14%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSK--HFPHAFFYGPPGVGKTSLAQIIAYMLERP 64
+ P L++F+GQ+ + KA +S+ H H FYGPPG+GKT+LA+II+ +
Sbjct: 18 IRPSYLKEFVGQQQIKENLLVFIKAAKSRNEHLDHTLFYGPPGLGKTTLAKIISNEIGGN 77
Query: 65 ILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEK-DHA 119
F +T K DL L N + V+FIDE HRLN +E L ME +
Sbjct: 78 ---FKSTAGPAIIKAADLASILTNLEK---NDVLFIDEIHRLNTLVEEVLYSAMEDFELD 131
Query: 120 LILGASTQD-------PNYSL----------SHAIRSRSFI-FELTPLNKSDLDRLCAKA 161
+I+G + P ++L S+ +R R I L N +L ++ +A
Sbjct: 132 IIIGEGSAARPVKITLPKFTLIGATTRFGLISNPLRDRFGIPMRLNFYNTEELKQVLNRA 191
Query: 162 LTLLKKQIEPGAKTYLLNNSAGDARALLNLL 192
LL + + S G R L LL
Sbjct: 192 SKLLDIDLTDSGSEEIAKRSRGTPRIALRLL 222
>ref|NP_342275.1| (NC_002754) Activator 1, replication factor C, small subunit (rfc)
[Sulfolobus solfataricus]
emb|CAB57535.1| (Y18930) activator 1, replication factor C, small subunit
[Sulfolobus solfataricus]
gb|AAK41065.1| (AE006700) Activator 1, replication factor C, small subunit (rfc)
[Sulfolobus solfataricus]
Length = 330
Score = 66.6 bits (161), Expect = 5e-10
Identities = 60/228 (26%), Positives = 103/228 (44%), Gaps = 27/228 (11%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYML-----ER 63
PK+L+D + Q ++ + L K ++ K+ PH F GPPG GKT+ A + + L
Sbjct: 16 PKTLDDIVNQREIIDR---LKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGDNYTE 72
Query: 64 PILLFNATDFK-LEDLRLKLKNYQNTLLK-----PVVFIDETHRLNKTQQEFLLPIME-- 115
L NA+D + ++ +R K+K + T++ VV +DE + Q+ L ME
Sbjct: 73 YFLELNASDERGIDVIRNKVKEFARTVIPGDIPFKVVLLDEADNMTADAQQALRRTMELY 132
Query: 116 -KDHALILGASTQDPNY--SLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIEPG 172
++ IL NY + I+SR+ +F PL K D+ K + +
Sbjct: 133 TENTRFILAC-----NYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIYIAKNEKAEYDQK 187
Query: 173 AKTYLLNNSAGDARALLNLLDLSA---KIEDPITLKTLQSLRPHSLND 217
A + + + GD R +N+L ++ KI K L +P + +
Sbjct: 188 ALETIYDITMGDMRKSINILQAASAYGKISVEAVFKVLGLAQPKEVRE 235
>ref|NP_376359.1| (NC_003106) 327aa long hypothetical replication factor C small
subunit [Sulfolobus tokodaii]
dbj|BAB65468.1| (AP000982) 327aa long hypothetical replication factor C small
subunit [Sulfolobus tokodaii]
Length = 327
Score = 65.9 bits (159), Expect = 8e-10
Identities = 61/228 (26%), Positives = 104/228 (44%), Gaps = 27/228 (11%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYML-----ER 63
P+SL+D + Q+ +V + L + ++ K+ PH F GPPG GKT+ A + + L +
Sbjct: 15 PRSLDDIVNQKDIVER---LKRFVKDKNMPHLLFSGPPGTGKTTAALALVHDLYGDNYRQ 71
Query: 64 PILLFNATDFK-LEDLRLKLKNYQNTLLK-----PVVFIDETHRLNKTQQEFLLPIME-- 115
L NA+D + ++ +R K+K + T+ VV +DE + Q+ L ME
Sbjct: 72 YFLELNASDERGIDVIRNKVKEFARTVAGGNVPFKVVLLDEADNMTADAQQALRRTMELY 131
Query: 116 -KDHALILGASTQDPNY--SLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIEPG 172
+ IL NY + I+SR+ +F PL K D+ A K + +
Sbjct: 132 TETTRFILAC-----NYLSKIIEPIQSRTALFRFYPLKKEDVVARLAYIAKNEKVEYDQK 186
Query: 173 AKTYLLNNSAGDARALLNLLDLSA---KIEDPITLKTLQSLRPHSLND 217
A + + + GD R +N+L S+ K+ K L +P + +
Sbjct: 187 ALETIYDITQGDMRKAINILQASSVYGKVTVEAVYKVLGLAQPKEIRE 234
>ref|NP_422030.1| (NC_002696) Holliday junction DNA helicase RuvB [Caulobacter
crescentus CB15]
sp|Q9A3G8|RUVB_CAUCR Holliday junction DNA helicase ruvB
gb|AAK25198.1| (AE005987) Holliday junction DNA helicase RuvB [Caulobacter
crescentus CB15]
Length = 346
Score = 65.9 bits (159), Expect = 8e-10
Identities = 48/122 (39%), Positives = 64/122 (52%), Gaps = 13/122 (10%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAYMLERP 64
L P++L +F+GQE G +A + + H +GPPG+GKT+LAQI+A L
Sbjct: 21 LRPQTLAEFVGQEQAKGNLRVFIEAAKGRGEALDHVLLFGPPGLGKTTLAQIVARELG-- 78
Query: 65 ILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHAL 120
+ F AT K DL L N + V+FIDE HRL+ +E L P ME DH L
Sbjct: 79 -VNFRATSGPVLNKPGDLAAILTNLE---ANDVLFIDEIHRLSSNVEEILYPAME-DHVL 133
Query: 121 IL 122
L
Sbjct: 134 DL 135
>ref|NP_147997.1| (NC_000854) replication factor C subunit [Aeropyrum pernix]
pir||C72633 probable replication factor C subunit APE1522 - Aeropyrum pernix
(strain K1)
dbj|BAA80521.1| (AP000061) 346aa long hypothetical replication factor C subunit
[Aeropyrum pernix]
Length = 346
Score = 65.9 bits (159), Expect = 8e-10
Identities = 52/199 (26%), Positives = 92/199 (46%), Gaps = 14/199 (7%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYML-----ER 63
P+SL+D + Q+H+V + L + ++ ++ PH F GPPG GKT+ A +A+ L +
Sbjct: 36 PRSLDDIVDQKHVVER---LKQFVKQRNMPHLLFAGPPGTGKTTAAHALAHDLFGENYRQ 92
Query: 64 PILLFNATDFK-LEDLRLKLKNYQNTLLKP-----VVFIDETHRLNKTQQEFLLPIMEKD 117
+L NA+D + + +R K+K + + P +V +DE + Q+ L +ME
Sbjct: 93 YMLELNASDERGINVIREKVKEFARSRTPPEIPFKIVLLDEADNMTSDAQQALRRLMELY 152
Query: 118 HALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIEPGAKTYL 177
++ + + I+SR F PL+K D+ E A +
Sbjct: 153 SSVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQDVIERLRYIAENEGVDYEEEALDAI 212
Query: 178 LNNSAGDARALLNLLDLSA 196
S GD R +N+L ++
Sbjct: 213 YEISEGDMRKAINVLQAAS 231
>ref|NP_356898.1| (NC_003063) AGR_L_2225p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_534216.1| (NC_003305) Holliday junction DNA helicase RuvB [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAK89683.1| (AE008311) AGR_L_2225p [Agrobacterium tumefaciens str. C58
(Cereon)]
gb|AAL44532.1| (AE009303) Holliday junction DNA helicase RuvB [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 346
Score = 65.1 bits (157), Expect = 1e-09
Identities = 45/119 (37%), Positives = 62/119 (51%), Gaps = 12/119 (10%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAYM 60
+ + L P+SL+DF GQ +A +++ H F GPPG+GKT+LAQI+A
Sbjct: 17 IDTTLRPQSLDDFTGQAEARANLKVFIEAAKNRGEALDHVLFVGPPGLGKTTLAQIMAKE 76
Query: 61 LERPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115
L + F +T K DL L N + + V+FIDE HRLN +E L P ME
Sbjct: 77 LG---VNFKSTSGPVIAKAGDLAALLTNLEE---RDVLFIDEIHRLNPAVEEILYPAME 129
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 64.7 bits (156), Expect = 2e-09
Identities = 41/112 (36%), Positives = 63/112 (55%), Gaps = 5/112 (4%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKHFP--HAFFYGPPGVGKTSLAQIIAYMLERP 64
L PK+L++++GQE L K +A +++ P H +GPPG+GKT+LA +IA+ L
Sbjct: 6 LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN 65
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115
+ + + K DL L N ++FIDE HRL++ +E L P ME
Sbjct: 66 LRVTSGPAIEKPGDLAAILANSLEE--GDILFIDEIHRLSRQAEEHLYPAME 115
>dbj|BAA76480.2| (AB015236) RuvB [Thermus thermophilus]
Length = 324
Score = 64.7 bits (156), Expect = 2e-09
Identities = 41/112 (36%), Positives = 63/112 (55%), Gaps = 5/112 (4%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKHFP--HAFFYGPPGVGKTSLAQIIAYMLERP 64
L PK+L++++GQE L K +A +++ P H +GPPG+GKT+LA +IA+ L
Sbjct: 6 LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN 65
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115
+ + + K DL L N ++FIDE HRL++ +E L P ME
Sbjct: 66 LRVTSGPAIEKPGDLAAILANSLEE--GDILFIDEIHRLSRQAEEHLYPAME 115
>pir||T11851 ruvB Protein - Thermus aquaticus thermophilus
Length = 324
Score = 64.7 bits (156), Expect = 2e-09
Identities = 41/112 (36%), Positives = 63/112 (55%), Gaps = 5/112 (4%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKHFP--HAFFYGPPGVGKTSLAQIIAYMLERP 64
L PK+L++++GQE L K +A +++ P H +GPPG+GKT+LA +IA+ L
Sbjct: 6 LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN 65
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115
+ + + K DL L N ++FIDE HRL++ +E L P ME
Sbjct: 66 LRVTSGPAIEKPGDLAAILANSLEE--GDILFIDEIHRLSRQAEEHLYPAME 115
>ref|NP_372165.1| (NC_002758) holliday junction DNA helicase [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_374754.1| (NC_002745) holliday junction DNA helicase [Staphylococcus aureus
subsp. aureus N315]
ref|NP_646408.1| (NC_003923) holliday junction DNA helicase [Staphylococcus aureus
subsp. aureus MW2]
sp|Q99TL2|RUVB_STAAM Holliday junction DNA helicase ruvB
dbj|BAB42733.1| (AP003134) holliday junction DNA helicase [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB57803.1| (AP003363) holliday junction DNA helicase [Staphylococcus aureus
subsp. aureus Mu50]
dbj|BAB95456.1| (AP004827) holliday junction DNA helicase [Staphylococcus aureus
subsp. aureus MW2]
Length = 334
Score = 64.7 bits (156), Expect = 2e-09
Identities = 62/210 (29%), Positives = 90/210 (42%), Gaps = 29/210 (13%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKHFP--HAFFYGPPGVGKTSLAQIIAYMLERP 64
L P L ++GQ + KA + +H P H +GPPG+GKT+L+ IIA +E
Sbjct: 21 LRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN 80
Query: 65 ILLFNATDFKLE-DLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEK------- 116
I + + DL L Q V+FIDE HRL+ +E L P ME
Sbjct: 81 IRTVSGPSLERPGDLAAILSGLQP---GDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIII 137
Query: 117 ---DHA----------LILGASTQDPNYSLSHAIRSRSFI-FELTPLNKSDLDRLCAKAL 162
D A ++GA+T+ SL+ +R R + L N+SDL + +
Sbjct: 138 GKGDEARSIRIDLPPFTLVGATTRAG--SLTGPLRDRFGVHLRLEYYNESDLKEIIIRTA 195
Query: 163 TLLKKQIEPGAKTYLLNNSAGDARALLNLL 192
+L I+ + L S G R LL
Sbjct: 196 EVLGTGIDEESAIELAKRSRGTPRVANRLL 225
>sp|Q56214|RUVB_THETH Holliday junction DNA helicase ruvB
gb|AAB03726.2| (U22817) RuvB Protein [Thermus thermophilus]
Length = 324
Score = 64.7 bits (156), Expect = 2e-09
Identities = 41/112 (36%), Positives = 63/112 (55%), Gaps = 5/112 (4%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKHFP--HAFFYGPPGVGKTSLAQIIAYMLERP 64
L PK+L++++GQE L K +A +++ P H +GPPG+GKT+LA +IA+ L
Sbjct: 6 LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN 65
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115
+ + + K DL L N ++FIDE HRL++ +E L P ME
Sbjct: 66 LRVTSGPAIEKPGDLAAILANSLEE--GDILFIDEIHRLSRQAEEHLYPAME 115
>ref|NP_609399.1| (NM_135555) RfC3 gene product [Drosophila melanogaster]
gb|AAF63387.1|AF247499_1 (AF247499) replication factor C subunit 3 [Drosophila melanogaster]
gb|AAM51048.1| (AY119188) SD11293p [Drosophila melanogaster]
Length = 332
Score = 63.9 bits (154), Expect = 3e-09
Identities = 53/206 (25%), Positives = 89/206 (42%), Gaps = 15/206 (7%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP---- 64
P L+D + E ++ + + + + K PH FYGPPG GKTS A L P
Sbjct: 19 PSGLDDLISHEEII---STITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSPQQFK 75
Query: 65 --ILLFNATDFK-LEDLRLKLKNYQNTL-----LKPVVFIDETHRLNKTQQEFLLPIMEK 116
+L NA+D + + +R ++ N+ +T ++ +DE + Q L I+EK
Sbjct: 76 SMVLELNASDDRGIGIVRGQILNFASTRTIFCDTFKLIILDEADAMTNDAQNALRRIIEK 135
Query: 117 DHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIEPGAKTY 176
+ + + A++SR F PL++ + K + QI K
Sbjct: 136 YTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRA 195
Query: 177 LLNNSAGDARALLNLLDLSAKIEDPI 202
LL + GD R +LN+L + D +
Sbjct: 196 LLTLAKGDMRKVLNVLQSTVMAFDTV 221
>ref|NP_245913.1| (NC_002663) RuvB [Pasteurella multocida]
sp|P57892|RUVB_PASMU Holliday junction DNA helicase ruvB
gb|AAK03060.1| (AE006137) RuvB [Pasteurella multocida]
Length = 335
Score = 63.5 bits (153), Expect = 4e-09
Identities = 62/211 (29%), Positives = 92/211 (43%), Gaps = 31/211 (14%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKA--LQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP 64
+ PK L D++GQ H+ + A +A L+ H +GPPG+GKT+LA I+A+ +
Sbjct: 23 IRPKLLNDYVGQPHVCEQMAIFIQAAKLRQDALDHLLIFGPPGLGKTTLANIVAHEMGVN 82
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHAL--- 120
I + K DL L N + V+FIDE HRL+ +E L P ME D+ L
Sbjct: 83 IRTTSGPVLEKAGDLAAMLTNLEP---HDVLFIDEIHRLSPAIEEVLYPAME-DYQLDIM 138
Query: 121 ------------------ILGASTQDPNYSLSHAIRSR-SFIFELTPLNKSDLDRLCAKA 161
++GA+T+ SL+ +R R + L DL + A++
Sbjct: 139 IGEGPAARSIKLDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLEFYAVEDLTSIVARS 196
Query: 162 LTLLKKQIEPGAKTYLLNNSAGDARALLNLL 192
L I A + S G R LL
Sbjct: 197 ANCLNLSISDTACYEIARRSRGTPRIANRLL 227
>sp|Q9L9C3|RUVB_RHIET Holliday junction DNA helicase ruvB
gb|AAF36814.1|AF175525_2 (AF175525) RuvB; Holliday junction binding protein; Holliday branch
migration protein [Rhizobium etli]
Length = 346
Score = 63.2 bits (152), Expect = 5e-09
Identities = 44/115 (38%), Positives = 60/115 (51%), Gaps = 12/115 (10%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAYMLERP 64
L P+SL++F GQ +A +++ H F GPPG+GKT+LAQI+A L
Sbjct: 21 LRPQSLDEFTGQAEARANLKVFIEAAKNRGEALDHVLFVGPPGLGKTTLAQIMAKELG-- 78
Query: 65 ILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115
+ F +T K DL L N + + V+FIDE HRLN +E L P ME
Sbjct: 79 -VNFRSTSGPVIAKAGDLAALLTNLEE---RDVLFIDEIHRLNPAVEEILYPAME 129
>ref|NP_348901.1| (NC_003030) Holliday junction specific DNA helicase, subunit ruvB
[Clostridium acetobutylicum]
sp|Q97GT1|RUVB_CLOAB Holliday junction DNA helicase ruvB
gb|AAK80241.1|AE007729_8 (AE007729) Holliday junction specific DNA helicase, subunit ruvB
[Clostridium acetobutylicum]
Length = 349
Score = 63.2 bits (152), Expect = 5e-09
Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 37/214 (17%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAYMLERP 64
L P+ L +++GQ + K +A + + H FYGPPG+GKT+LA IIA +
Sbjct: 20 LRPQKLNEYIGQSKVKEKMDIFIRAAKKRGEALDHVLFYGPPGLGKTTLANIIAKEMGGN 79
Query: 65 ILLFNATDFK----LEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHAL 120
+ + + + L + L Y V+FIDE HRLN++ +E L P ME D+AL
Sbjct: 80 LKVTSGPAIERAGDLAAILTGLSEYD------VLFIDEIHRLNRSVEEILYPAME-DYAL 132
Query: 121 IL----GASTQD-----PNYSLSHA----------IRSRSFIFELTPL---NKSDLDRLC 158
+ GA+ + P ++L A +R R + L P+ N +L +
Sbjct: 133 DIIIGKGAAAKSIRLDLPKFTLIGATTRVGLLTAPLRDRFGV--LCPMEFYNDEELKEII 190
Query: 159 AKALTLLKKQIEPGAKTYLLNNSAGDARALLNLL 192
++ ++L I+ A + S G R LL
Sbjct: 191 VRSSSILDIDIDEDAALEIAMRSRGTPRIANRLL 224
>ref|NP_622807.1| (NC_003869) Holliday junction resolvasome helicase subunit
[Thermoanaerobacter tengcongensis]
gb|AAM24411.1| (AE013080) Holliday junction resolvasome helicase subunit
[Thermoanaerobacter tengcongensis]
Length = 338
Score = 63.2 bits (152), Expect = 5e-09
Identities = 59/208 (28%), Positives = 94/208 (44%), Gaps = 25/208 (12%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKHFP--HAFFYGPPGVGKTSLAQIIAYMLERP 64
L P+ L +++GQE + + +A + + P H YGPPG+GKT+LA +I+ +
Sbjct: 20 LRPRWLSEYIGQEKIKQELKIYIEAAKKRGEPLDHVLLYGPPGLGKTTLATVISNEMGVG 79
Query: 65 ILLFNATDFKLE-DLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEK---DHAL 120
I + + + DL L N Q ++FIDE HRLN++ +E L P ME D +
Sbjct: 80 IKITSGPAIERSGDLAAILTNLQE---NDILFIDEIHRLNRSVEEILYPAMEDFELDIVI 136
Query: 121 ILGASTQD-----PNYSLSHA----------IRSR-SFIFELTPLNKSDLDRLCAKALTL 164
G S + P ++L A +RSR I L + +L + ++ +
Sbjct: 137 GKGPSARSIRLSLPKFTLIGATTRAALMTSPLRSRFGVINRLDYYSVEELKEIIKRSANI 196
Query: 165 LKKQIEPGAKTYLLNNSAGDARALLNLL 192
L I+ A + S G R LL
Sbjct: 197 LNIGIDEDAAFEIARRSRGTPRIANRLL 224
>ref|NP_405610.1| (NC_003143) Holliday junction DNA helicase [Yersinia pestis]
sp|Q8ZEU5|RUVB_YERPE Holliday junction DNA helicase ruvB
emb|CAC90870.1| (AJ414151) Holliday junction DNA helicase [Yersinia pestis]
Length = 334
Score = 62.8 bits (151), Expect = 7e-09
Identities = 62/218 (28%), Positives = 97/218 (44%), Gaps = 35/218 (16%)
Query: 2 SLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAY 59
S+ + PK L +++GQ H+ + +A + + H +GPPG+GKT+LA IIA
Sbjct: 18 SIDRAIRPKLLTEYVGQPHVREQMEIFIQAAKQRGDALDHVLIFGPPGLGKTTLANIIAN 77
Query: 60 MLERPILLFNATDFKLE---DLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEK 116
E + L + LE DL L N + V+FIDE HRL+ +E L P ME
Sbjct: 78 --EMGVNLRTTSGPVLEKAGDLAAMLTNLEP---HDVLFIDEIHRLSPVVEEILYPAME- 131
Query: 117 DHAL---------------------ILGASTQDPNYSLSHAIRSR-SFIFELTPLNKSDL 154
D+ L ++GA+T+ SL+ +R R + L +DL
Sbjct: 132 DYQLDIMIGEGPAARSIKLDLPPFTLIGATTRAG--SLTSPLRDRFGIVQRLEFYQVADL 189
Query: 155 DRLCAKALTLLKKQIEPGAKTYLLNNSAGDARALLNLL 192
+ + +++ L ++ P L S G R LL
Sbjct: 190 EHIVSRSAKCLGLELTPEGAHQLARRSRGTPRITNRLL 227
>ref|NP_104905.1| (NC_002678) RuvB; Holliday branch migration protein [Mesorhizobium
loti]
sp|Q98F76|RUVB_RHILO Holliday junction DNA helicase ruvB
dbj|BAB50691.1| (AP003003) Holliday branch migration protein; RuvB [Mesorhizobium
loti]
Length = 345
Score = 62.4 bits (150), Expect = 9e-09
Identities = 44/115 (38%), Positives = 60/115 (51%), Gaps = 12/115 (10%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAYMLERP 64
L P++L DF+GQ + +A + ++ H F GPPG+GKT+LAQI+A L
Sbjct: 21 LRPQTLADFVGQAAVRANLKVFIEAAKGRNEALDHVLFVGPPGLGKTTLAQIMARELG-- 78
Query: 65 ILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115
+ F +T K DL L N + V+FIDE HRLN +E L P ME
Sbjct: 79 -VNFRSTSGPVIAKAGDLAALLTNLEE---GDVLFIDEIHRLNPAVEEILYPAME 129
>ref|NP_326489.1| (NC_002771) HOLLIDAY JUNCTION DNA HELICASE RUVB [Mycoplasma
pulmonis]
sp|Q98PR1|RUVB_MYCPU Holliday junction DNA helicase ruvB
emb|CAC13831.1| (AL445565) HOLLIDAY JUNCTION DNA HELICASE RUVB [Mycoplasma
pulmonis]
Length = 315
Score = 62.4 bits (150), Expect = 9e-09
Identities = 60/211 (28%), Positives = 93/211 (43%), Gaps = 31/211 (14%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKHFP--HAFFYGPPGVGKTSLAQIIAYMLERP 64
+ PK+ DF+GQ L + + Q ++ P H FYG PG GKTSLA II+ L
Sbjct: 7 IRPKNFSDFVGQNKLKKLLKVMISSAQVQNRPLDHILFYGNPGTGKTSLASIISNSLNSR 66
Query: 65 ILLF--NATDFKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME------- 115
I N D K + L L +N ++F+DE H +NK +E L I+E
Sbjct: 67 IKYAQGNLLDKKTDILTLFASVEEN----DIIFVDEIHAINKNIEELLYSILEDFVVDIV 122
Query: 116 ---KDHALI----------LGASTQDPNYSLSHAIRSR-SFIFELTPLNKSDLDRLCAKA 161
+ ++ I +GA+TQ +S +R R I +++ D++++
Sbjct: 123 IGVESNSKIMRLNLKPFTFIGATTQINR--ISKPLRDRFGLIGQISNYQVEDIEKIIKNN 180
Query: 162 LTLLKKQIEPGAKTYLLNNSAGDARALLNLL 192
L QI+ A + S R +NLL
Sbjct: 181 SKKLNIQIDEKATNLIALYSQNIPRLAINLL 211
>ref|NP_386855.1| (NC_003047) PROBABLE HOLLIDAY JUNCTION DNA HELICASE PROTEIN
[Sinorhizobium meliloti]
sp|Q92M92|RUVB_RHIME Holliday junction DNA helicase ruvB
emb|CAC47328.1| (AL591791) PROBABLE HOLLIDAY JUNCTION DNA HELICASE PROTEIN
[Sinorhizobium meliloti]
Length = 346
Score = 62.0 bits (149), Expect = 1e-08
Identities = 43/119 (36%), Positives = 62/119 (51%), Gaps = 12/119 (10%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAYM 60
L + + P++L++F GQ +A +++ H F GPPG+GKT+LAQI+A
Sbjct: 17 LDATMRPQTLDEFTGQAEARANLKIFIEAARNRGEALDHVLFVGPPGLGKTTLAQIMAKE 76
Query: 61 LERPILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115
L + F +T K DL L N + + V+FIDE HRLN +E L P ME
Sbjct: 77 LG---VNFRSTSGPVIAKAGDLAALLTNLEE---RDVLFIDEIHRLNPAVEEILYPAME 129
>ref|NP_282508.1| (NC_002163) holliday junction DNA helicase [Campylobacter jejuni]
sp|Q9PMT7|RUVB_CAMJE Holliday junction DNA helicase ruvB
pir||G81280 holliday junction DNA helicase Cj1362 [imported] - Campylobacter
jejuni (strain NCTC 11168)
emb|CAB73789.1| (AL139078) holliday junction DNA helicase [Campylobacter jejuni]
Length = 335
Score = 62.0 bits (149), Expect = 1e-08
Identities = 65/212 (30%), Positives = 90/212 (41%), Gaps = 33/212 (15%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKH---FPHAFFYGPPGVGKTSLAQIIAYMLER 63
L P + + ++GQE + K+ +F A K H F GP G+GKT+LA II+Y +
Sbjct: 20 LRPSNFDGYIGQES-IKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSA 78
Query: 64 PILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHAL-- 120
I A K DL L N ++FIDE HRL+ +E L P ME D+ L
Sbjct: 79 NIKTTAAPMIEKSGDLAAILTNLSE---GDILFIDEIHRLSPAIEEVLYPAME-DYRLDI 134
Query: 121 -------------------ILGASTQDPNYSLSHAIRSR-SFIFELTPLNKSDLDRLCAK 160
++GA+T+ LS+ +R R F L S+L + K
Sbjct: 135 IIGSGPAAQTIKIDLPKFTLIGATTRAG--MLSNPLRDRFGMQFRLEFYKDSELALILQK 192
Query: 161 ALTLLKKQIEPGAKTYLLNNSAGDARALLNLL 192
A L K E A + S R L LL
Sbjct: 193 AALKLNKTCEEKAALEIAKRSRSTPRIALRLL 224
>ref|NP_562863.1| (NC_003366) holliday junction DNA helicase [Clostridium
perfringens]
sp|Q8XJ14|RUVB_CLOPE Holliday junction DNA helicase ruvB
dbj|BAB81653.1| (AP003192) holliday junction DNA helicase [Clostridium perfringens]
Length = 346
Score = 62.0 bits (149), Expect = 1e-08
Identities = 37/111 (33%), Positives = 58/111 (51%), Gaps = 4/111 (3%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAYMLERP 64
L P+ + +++GQ+ + + KA Q + H YGPPG+GKT+LA IIA +
Sbjct: 21 LRPEKINEYIGQDKVKERLNIFIKAAQRREEALDHVILYGPPGLGKTTLANIIANEMGGN 80
Query: 65 ILLFNATDFKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115
+ + + + + NT V+FIDE HRLN++ +E L P ME
Sbjct: 81 LKITSGPAIERAGDLAAILTTLNT--NDVLFIDEIHRLNRSVEEILYPAME 129
>ref|NP_212156.1| (NC_001318) Holliday junction DNA helicase (ruvB) [Borrelia
burgdorferi]
sp|P70828|RUVB_BORBU Holliday junction DNA helicase ruvB
pir||F70102 DNA-binding protein ruvB - Lyme disease spirochete
emb|CAA70097.1| (Y08885) B subunit of RuvAB helicase [Borrelia burgdorferi]
gb|AAC66410.1| (AE001116) Holliday junction DNA helicase (ruvB) [Borrelia
burgdorferi]
Length = 347
Score = 61.6 bits (148), Expect = 1e-08
Identities = 72/261 (27%), Positives = 110/261 (41%), Gaps = 34/261 (13%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAYMLERP 64
L PK EDF GQ ++ + +A + + H F GPPG+GKT+LA IIA+ +
Sbjct: 25 LRPKVFEDFKGQVNVKETLSIFIRASKERDEALDHVFLSGPPGLGKTTLASIIAFEMNAS 84
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEK---DHAL 120
I + +A F K +D+ L K V+FIDE HRL +E L ME D +
Sbjct: 85 IKITSAPAFDKPKDIIGILTGLDE---KSVLFIDEIHRLRPIIEEMLCIAMEDYELDWVI 141
Query: 121 ILGASTQD-----PNYSLSHAIRSRSFI-------------FELTPLNKSDLDRLCAKAL 162
GA+ + P ++L A + FEL ++ +L + +
Sbjct: 142 GQGANARTVRMPLPKFTLIGATTKPGKVTSPLYARFGITARFEL--YSEIELVEIIKRNS 199
Query: 163 TLLKKQIEPGAKTYLLNNSAGDARALLNLL----DLSAKIEDPITLKTLQSLRPHSLN-D 217
+L +IE A L +S G R LL D++ + + S+ L D
Sbjct: 200 LILNIEIEEDAAFLLARSSRGTPRIANRLLRRIRDIAQVTGSLVITSDIVSIGLEMLRID 259
Query: 218 GSYSDDTHYNLTSALIKSLRG 238
G D+ N+ +LI G
Sbjct: 260 GEGLDEQDRNILRSLILKFNG 280
>sp|P09122|DP3X_BACSU DNA polymerase III subunit gamma/tau
Length = 563
Score = 61.6 bits (148), Expect = 1e-08
Identities = 75/299 (25%), Positives = 125/299 (41%), Gaps = 47/299 (15%)
Query: 2 SLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAF-FYGPPGVGKTSLAQI---- 56
+L + P+ ED +GQEH+ L AL K F HA+ F GP G GKTS A+I
Sbjct: 5 ALYRVFRPQRFEDVVGQEHIT---KTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKA 61
Query: 57 -------------------------IAYMLERPILLFNATDFKLEDLRLKLKNYQNTLLK 91
I+ ++E N D ++ D+R K+K + +
Sbjct: 62 VNCEHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGVD-EIRDIRDKVKFAPSAVTY 120
Query: 92 PVVFIDETHRLNKTQQEFLLPIMEK--DHALILGASTQDPNYSLSHAIRSRSFIFELTPL 149
V IDE H L+ LL +E+ +H + + A+T+ L+ I SR F+ +
Sbjct: 121 KVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLT--IISRCQRFDFKRI 178
Query: 150 NKSDLDRLCAKALTLLKKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIEDPITLKTLQS 209
+ K + + Q+E G+ + + + G R L+LLD + I LK +
Sbjct: 179 TSQAIVGRMNKIVDAEQLQVEEGSLEIIASAAHGGMRDALSLLDQAISFSGDI-LKVEDA 237
Query: 210 LRPHSLNDGSYSDDTHYNLTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIF 268
L L G+ S L KSL + + ++ L L+ G++P + ++ +
Sbjct: 238 L----LITGAVSQ----LYIGKLAKSLHDKNVSDALETLNELLQQGKDPAKLIEDMIFY 288
>ref|NP_539251.1| (NC_003317) HOLLIDAY JUNCTION DNA HELICASE RUVB [Brucella
melitensis]
sp|Q8YIV5|RUVB_BRUME Holliday junction DNA helicase ruvB
gb|AAL51515.1| (AE009475) HOLLIDAY JUNCTION DNA HELICASE RUVB [Brucella
melitensis]
Length = 346
Score = 61.6 bits (148), Expect = 1e-08
Identities = 43/115 (37%), Positives = 61/115 (52%), Gaps = 12/115 (10%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKA--LQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP 64
L P++L+DF+GQ +A ++ + H F GPPG+GKT+LAQI+A L
Sbjct: 20 LRPQTLDDFVGQAAARANLKVFIEAAKVRGEALDHVLFVGPPGLGKTTLAQIMAKELG-- 77
Query: 65 ILLFNATD----FKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115
+ F +T K DL L N + + V+FIDE HRL+ +E L P ME
Sbjct: 78 -VNFRSTSGPVIAKAGDLAALLTNLEE---RDVLFIDEIHRLSPAVEEILYPAME 128
>ref|NP_387900.1| (NC_000964) DNA polymerase III (gamma and tau subunits) [Bacillus
subtilis]
pir||S13786 DNA-directed DNA polymerase (EC 2.7.7.7) III chain dnaX - Bacillus
subtilis
dbj|BAA05255.1| (D26185) DNA polymerase III subunit [Bacillus subtilis]
emb|CAA34877.1| (X17014) dnaZX [Bacillus subtilis]
emb|CAB11795.1| (Z99104) DNA polymerase III (gamma and tau subunits) [Bacillus
subtilis]
Length = 563
Score = 61.6 bits (148), Expect = 1e-08
Identities = 75/299 (25%), Positives = 125/299 (41%), Gaps = 47/299 (15%)
Query: 2 SLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAF-FYGPPGVGKTSLAQI---- 56
+L + P+ ED +GQEH+ L AL K F HA+ F GP G GKTS A+I
Sbjct: 5 ALYRVFRPQRFEDVVGQEHIT---KTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKA 61
Query: 57 -------------------------IAYMLERPILLFNATDFKLEDLRLKLKNYQNTLLK 91
I+ ++E N D ++ D+R K+K + +
Sbjct: 62 VNCEHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGVD-EIRDIRDKVKFAPSAVTY 120
Query: 92 PVVFIDETHRLNKTQQEFLLPIMEK--DHALILGASTQDPNYSLSHAIRSRSFIFELTPL 149
V IDE H L+ LL +E+ +H + + A+T+ L+ I SR F+ +
Sbjct: 121 KVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLT--IISRCQRFDFKRI 178
Query: 150 NKSDLDRLCAKALTLLKKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIEDPITLKTLQS 209
+ K + + Q+E G+ + + + G R L+LLD + I LK +
Sbjct: 179 TSQAIVGRMNKIVDAEQLQVEEGSLEIIASAADGGMRDALSLLDQAISFSGDI-LKVEDA 237
Query: 210 LRPHSLNDGSYSDDTHYNLTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIF 268
L L G+ S L KSL + + ++ L L+ G++P + ++ +
Sbjct: 238 L----LITGAVSQ----LYIGKLAKSLHDKNVSDALETLNELLQQGKDPAKLIEDMIFY 288
>emb|CAA29958.1| (X06803) dnaZX-like ORF put. DNA polymerase III [Bacillus subtilis]
Length = 422
Score = 61.6 bits (148), Expect = 1e-08
Identities = 75/299 (25%), Positives = 125/299 (41%), Gaps = 47/299 (15%)
Query: 2 SLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAF-FYGPPGVGKTSLAQI---- 56
+L + P+ ED +GQEH+ L AL K F HA+ F GP G GKTS A+I
Sbjct: 5 ALYRVFRPQRFEDVVGQEHIT---KTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKA 61
Query: 57 -------------------------IAYMLERPILLFNATDFKLEDLRLKLKNYQNTLLK 91
I+ ++E N D ++ D+R K+K + +
Sbjct: 62 VNCEHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGVD-EIRDIRDKVKFAPSAVTY 120
Query: 92 PVVFIDETHRLNKTQQEFLLPIMEK--DHALILGASTQDPNYSLSHAIRSRSFIFELTPL 149
V IDE H L+ LL +E+ +H + + A+T+ L+ I SR F+ +
Sbjct: 121 KVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLT--IISRCQRFDFKRI 178
Query: 150 NKSDLDRLCAKALTLLKKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIEDPITLKTLQS 209
+ K + + Q+E G+ + + + G R L+LLD + I LK +
Sbjct: 179 TSQAIVGRMNKIVDAEQLQVEEGSLEIIASAADGGMRDALSLLDQAISFSGDI-LKVEDA 237
Query: 210 LRPHSLNDGSYSDDTHYNLTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIF 268
L L G+ S L KSL + + ++ L L+ G++P + ++ +
Sbjct: 238 L----LITGAVSQ----LYIGKLAKSLHDKNVSDALETLNELLQQGKDPAKLIEDMIFY 288
>ref|NP_342276.1| (NC_002754) Activator 1, replication factor C (RFC) large subunit
(rfcL) [Sulfolobus solfataricus]
emb|CAB57534.1| (Y18930) replication factor C, large subunit [Sulfolobus
solfataricus]
gb|AAK41066.1| (AE006700) Activator 1, replication factor C (RFC) large subunit
(rfcL) [Sulfolobus solfataricus]
Length = 405
Score = 61.2 bits (147), Expect = 2e-08
Identities = 51/178 (28%), Positives = 90/178 (49%), Gaps = 11/178 (6%)
Query: 43 YGPPGVGKTSLAQIIAYMLERPILLFNATDF-KLEDLRL---KLKNYQNTL--LKPVVFI 96
+GPPGVGKT LA+ +A+ +L NA+D KL+D++ K Y + ++ +
Sbjct: 46 HGPPGVGKTVLAEALAHDYNFELLEMNASDSRKLQDIKSIAEKAAVYGSIFGTKGKLILL 105
Query: 97 DETHRLNKTQQ----EFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKS 152
DE +N + + +L ++EK I+ + N L +R+++ + EL+ L K
Sbjct: 106 DEVDGINVREDTGAIQGILELIEKTKYPIIMTANDPWNPGLRE-LRNKAKMIELSKLGKY 164
Query: 153 DLDRLCAKALTLLKKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIEDPITLKTLQSL 210
L R+ K K + A Y++++S GDAR +N+L + +TL ++SL
Sbjct: 165 PLRRILKKICQAEKIICDDEALNYIIDSSEGDARYAINILQGIGEGYGKVTLNLVESL 222
>ref|NP_231479.1| (NC_002505) Holliday junction DNA helicase RuvB [Vibrio cholerae]
sp|Q9KR02|RUVB_VIBCH Holliday junction DNA helicase ruvB
pir||F82149 Holliday junction DNA helicase RuvB VC1845 [imported] - Vibrio
cholerae (group O1 strain N16961)
gb|AAF94993.1| (AE004260) Holliday junction DNA helicase RuvB [Vibrio cholerae]
Length = 334
Score = 61.2 bits (147), Expect = 2e-08
Identities = 40/112 (35%), Positives = 57/112 (50%), Gaps = 6/112 (5%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAYMLERP 64
+ PK L D+ GQ+H+ + +A Q + H +GPPG+GKT+LA I+A +
Sbjct: 25 IRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGKTTLANIVANEMGVN 84
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115
I + K DL L N + V+FIDE HRL+ +E L P ME
Sbjct: 85 IRTTSGPVLEKAGDLAALLTNLEE---NDVLFIDEIHRLSPMVEEVLYPAME 133
>ref|NP_594540.1| (NC_003424) replication factor C activator 1 41 kd subunit
[Schizosaccharomyces pombe]
sp|Q09843|RFC2_SCHPO Probable activator 1 41 kDa subunit (Replication factor C 41 kDa
subunit)
pir||S62493 replication factor C activator 1 41 kd subunit - fission yeast
(Schizosaccharomyces pombe)
emb|CAA91237.1| (Z64354) replication factor C activator 1 41 kd subunit
[Schizosaccharomyces pombe]
Length = 340
Score = 60.8 bits (146), Expect = 3e-08
Identities = 56/225 (24%), Positives = 93/225 (40%), Gaps = 23/225 (10%)
Query: 6 LLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP- 64
L PK+L+ QE V L K L S + PH FYG PG GKTS ++ L P
Sbjct: 24 LYRPKTLDQVSSQESTV---QVLKKTLLSNNLPHMLFYGSPGTGKTSTILALSRELFGPQ 80
Query: 65 -----ILLFNATDFK-LEDLRLKLKNYQNTLLK-----------PVVFIDETHRLNKTQQ 107
+L NA+D + + +R K+K++ T + ++ +DE + + Q
Sbjct: 81 LMKSRVLELNASDERGISIIREKVKSFAKTTVTNKVDGYPCPPFKIIILDEADSMTQDAQ 140
Query: 108 EFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKK 167
L ME + + + + SR + PL+ ++ +
Sbjct: 141 AALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYRFKPLDNENMVKRLEFIAADQAV 200
Query: 168 QIEPGAKTYLLNNSAGDARALLNLLDLSAKIED--PITLKTLQSL 210
+EPG L+ S GD R + L +A + PIT+ +++ L
Sbjct: 201 SMEPGVVNALVECSGGDMRKAITFLQSAANLHQGTPITISSVEEL 245
>sp|Q9KDI8|RUVB_BACHD Holliday junction DNA helicase ruvB
Length = 333
Score = 60.5 bits (145), Expect = 3e-08
Identities = 61/215 (28%), Positives = 95/215 (43%), Gaps = 39/215 (18%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKA--LQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP 64
+ P S E ++GQE + +A ++ + H YGPPG+GKT+L+ IIA E
Sbjct: 21 IRPHSFEQYIGQEKVKQNLKVFIEAAKMREEALDHVLLYGPPGLGKTTLSTIIAN--ELG 78
Query: 65 ILLFNATDFKLE---DLRLKLKNYQNTLLKP--VVFIDETHRLNKTQQEFLLPIMEKDHA 119
+ + + +E DL L T L+P V+FIDE HRLN+ +E L P ME D+
Sbjct: 79 VQMRTTSGPAIERPGDLAAIL-----TALEPGDVLFIDEIHRLNRMVEEVLYPAME-DYC 132
Query: 120 L---------------------ILGASTQDPNYSLSHAIRSR-SFIFELTPLNKSDLDRL 157
+ ++GA+T+ LS +R R + L N +L +
Sbjct: 133 IDIVIGKGPTARSVRLDLPPFTLVGATTRAG--MLSSPLRDRFGVMARLEYYNVEELTTI 190
Query: 158 CAKALTLLKKQIEPGAKTYLLNNSAGDARALLNLL 192
+ T+ ++E A + S G R LL
Sbjct: 191 IERTATIFDTELERDASIEIARRSRGTPRIANRLL 225
>ref|NP_299188.1| (NC_002488) holliday junction binding protein, DNA helicase
[Xylella fastidiosa 9a5c]
sp|Q9PC79|RUVB_XYLFA Holliday junction DNA helicase ruvB
pir||E82623 holliday junction binding protein, DNA helicase XF1902 [imported] -
Xylella fastidiosa (strain 9a5c)
gb|AAF84708.1|AE004010_5 (AE004010) holliday junction binding protein, DNA helicase [Xylella
fastidiosa 9a5c]
Length = 343
Score = 60.5 bits (145), Expect = 3e-08
Identities = 40/112 (35%), Positives = 60/112 (52%), Gaps = 6/112 (5%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAYMLERP 64
+ PK L D+LGQ+ + + +A +++ H +GPPG+GKT+L+ +IAY L
Sbjct: 20 IRPKRLADYLGQQPVREQMDIYIQATKARAEALDHVLIFGPPGLGKTTLSHVIAYELGVK 79
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115
+ + + K DL L N Q V+FIDE HRL+ +E L P ME
Sbjct: 80 LRVTSGPVIEKAGDLAALLTNLQP---YDVLFIDEIHRLSPVVEEVLYPAME 128
>ref|NP_465057.1| (NC_003210) highly similar to Holliday junction DNA helicase RuvB
[Listeria monocytogenes EGD-e]
sp|Q8Y6Z8|RUVB_LISMO Holliday junction DNA helicase ruvB
emb|CAC99610.1| (AL591979) highly similar to Holliday junction DNA helicase RuvB
[Listeria monocytogenes]
Length = 335
Score = 60.1 bits (144), Expect = 4e-08
Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 10/120 (8%)
Query: 1 MSLTSLLNPKSLEDFLGQEHLVGKDAPLFKA--LQSKHFPHAFFYGPPGVGKTSLAQIIA 58
+S + L P++L ++GQ+ + +A L+++ H YGPPG+GKT+LA +IA
Sbjct: 16 VSFETSLRPQNLSQYIGQDKVKNNLTVFIEAATLRNEALDHVLLYGPPGLGKTTLAMVIA 75
Query: 59 YMLERPILLFNATDFKLE-DLRLKLKNYQNTLLKP--VVFIDETHRLNKTQQEFLLPIME 115
+ I + + DL L T L+P V+FIDE HRL++ +E L P ME
Sbjct: 76 SEMGSQIKTTSGPAIERPGDLATIL-----TSLEPGDVLFIDEIHRLSRAIEEILYPAME 130
>ref|NP_470903.1| (NC_003212) highly similar to Holliday junction DNA helicase RuvB
[Listeria innocua]
sp|Q92BI2|RUVB_LISIN Holliday junction DNA helicase ruvB
emb|CAC96798.1| (AL596169) highly similar to Holliday junction DNA helicase RuvB
[Listeria innocua]
Length = 335
Score = 60.1 bits (144), Expect = 4e-08
Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 10/120 (8%)
Query: 1 MSLTSLLNPKSLEDFLGQEHLVGKDAPLFKA--LQSKHFPHAFFYGPPGVGKTSLAQIIA 58
+S + L P++L ++GQ+ + +A L+++ H YGPPG+GKT+LA +IA
Sbjct: 16 VSFETSLRPQTLSQYIGQDKVKNNLTVFIEAATLRNEALDHVLLYGPPGLGKTTLAMVIA 75
Query: 59 YMLERPILLFNATDFKLE-DLRLKLKNYQNTLLKP--VVFIDETHRLNKTQQEFLLPIME 115
+ I + + DL L T L+P V+FIDE HRL++ +E L P ME
Sbjct: 76 SEMGSEIKTTSGPAIERPGDLATIL-----TSLEPGDVLFIDEIHRLSRAIEEILYPAME 130
>ref|NP_518621.1| (NC_003295) PROBABLE HOLLIDAY JUNCTION DNA HELICASE PROTEIN
[Ralstonia solanacearum]
sp|Q8Y236|RUVB_RALSO Holliday junction DNA helicase ruvB
emb|CAD14028.1| (AL646059) PROBABLE HOLLIDAY JUNCTION DNA HELICASE PROTEIN
[Ralstonia solanacearum]
Length = 357
Score = 60.1 bits (144), Expect = 4e-08
Identities = 60/213 (28%), Positives = 95/213 (44%), Gaps = 35/213 (16%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAYMLERP 64
L PK L++++GQE + G+ A + + H +GPPG+GKT+LA IIA E
Sbjct: 34 LRPKLLDEYVGQEKVRGQLDIFMTAAKKRREALDHVLLFGPPGLGKTTLAHIIA--REMG 91
Query: 65 ILLFNATDFKLE---DLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHAL- 120
+ L + LE DL L N + V+FIDE HRL+ +E L P +E D+ +
Sbjct: 92 VNLRQTSGPVLERPGDLAALLTNLE---ANDVLFIDEIHRLSPVVEEILYPALE-DYQID 147
Query: 121 --------------------ILGASTQDPNYSLSHAIRSR-SFIFELTPLNKSDLDRLCA 159
++GA+T+ L++ +R R + L ++L R+
Sbjct: 148 IMIGEGPAARSVKLDLQPFTLVGATTRAG--MLTNPLRDRFGIVARLEFYTPTELARIVT 205
Query: 160 KALTLLKKQIEPGAKTYLLNNSAGDARALLNLL 192
++ LL +I + S G R LL
Sbjct: 206 RSAGLLDARIAEDGALEIAKRSRGTPRIANRLL 238
>ref|NP_633845.1| (NC_003901) replication factor C subunit [Methanosarcina mazei
Goe1]
gb|AAM31517.1| (AE013419) replication factor C subunit [Methanosarcina mazei Goe1]
Length = 338
Score = 59.7 bits (143), Expect = 6e-08
Identities = 58/217 (26%), Positives = 96/217 (43%), Gaps = 25/217 (11%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAY------MLE 62
P L GQE + + L + +K+ PH F GPPGVGKT+ A IA +
Sbjct: 21 PVRLNQVAGQEETIER---LMSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGEDLWR 77
Query: 63 RPILLFNATDFK-LEDLRLKLKNYQNTLLK-----PVVFIDETHRLNKTQQEFLLPIMEK 116
NA+D + ++ +R K+KN+ T ++F+DE L Q L MEK
Sbjct: 78 ENFTELNASDERGIDIVRNKIKNFAKTAPMGGAPFKIIFLDEADALTSDAQSALRRTMEK 137
Query: 117 DHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQ----IEPG 172
+ + + + + I+SR ++ L+ D+ + L + K+ I G
Sbjct: 138 FSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLS----DKAIRERLEYIAKEQDLSITDG 193
Query: 173 AKTYLLNNSAGDARALLNLLDLSA--KIEDPITLKTL 207
L+ + GD R +N L +A +E PI+ +T+
Sbjct: 194 GYEALIYVAQGDMRKAVNSLQAAAFIDVEKPISRETI 230
>ref|NP_438478.1| (NC_000907) Holliday junction DNA helicase (ruvB) [Haemophilus
influenzae Rd]
sp|P44631|RUVB_HAEIN Holliday junction DNA helicase ruvB
pir||B64061 DNA-binding protein ruvB - Haemophilus influenzae (strain Rd KW20)
gb|AAC21975.1| (U32716) Holliday junction DNA helicase (ruvB) [Haemophilus
influenzae Rd]
Length = 335
Score = 59.3 bits (142), Expect = 7e-08
Identities = 61/211 (28%), Positives = 92/211 (42%), Gaps = 31/211 (14%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKA--LQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP 64
+ PK L D++GQ + + KA L+ H +GPPG+GKT+LA I+A +
Sbjct: 23 IRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMGVN 82
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHAL--- 120
I + K DL L N + V+FIDE HRL+ +E L P ME D+ L
Sbjct: 83 IRTTSGPVLEKAGDLAAMLTNLEP---HDVLFIDEIHRLSPAIEEVLYPAME-DYQLDIM 138
Query: 121 ------------------ILGASTQDPNYSLSHAIRSR-SFIFELTPLNKSDLDRLCAKA 161
++GA+T+ SL+ +R R + L + DL + A++
Sbjct: 139 IGEGPAARSIKLDLPPFTLVGATTRAG--SLTSPLRDRFGIVQRLEFYSVEDLTSIVARS 196
Query: 162 LTLLKKQIEPGAKTYLLNNSAGDARALLNLL 192
L ++E A + S G R LL
Sbjct: 197 AGCLNLELEQQAAFEVARRSRGTPRIANRLL 227
>gb|EAA09454.1| (AAAB01008900) agCP15104 [Anopheles gambiae str. PEST]
Length = 346
Score = 59.3 bits (142), Expect = 7e-08
Identities = 53/221 (23%), Positives = 94/221 (41%), Gaps = 15/221 (6%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP---- 64
P L D + E ++G + K ++ + PH FYGPPG GKTS A L +P
Sbjct: 36 PAKLNDLISHEEIIGT---INKFIKEEQLPHLLFYGPPGTGKTSTILACARQLYKPQSFG 92
Query: 65 --ILLFNATDFK-LEDLRLKLKNYQN--TLLK---PVVFIDETHRLNKTQQEFLLPIMEK 116
+L NA+D + + +R ++ ++ + T+ K ++ +DE + Q L I+EK
Sbjct: 93 SMVLELNASDDRGINIVRGQILDFASTRTIFKGGYKLIILDEADAMTNDAQNALRRIIEK 152
Query: 117 DHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIEPGAKTY 176
+ + + AI+SR F PL+ + + + K
Sbjct: 153 YTENVRFCIICNYLSKIIPAIQSRCTRFRFAPLSPDQILPRLEHVVEAEGIDVTDDGKKA 212
Query: 177 LLNNSAGDARALLNLLDLSAKIEDPITLKTLQSLRPHSLND 217
L+ + GD R +LN+L + +T + + H L +
Sbjct: 213 LMTLAGGDMRKVLNVLQSTWMAYKKVTEVNVYNCVGHPLKE 253
>ref|NP_274267.1| (NC_003112) Holliday junction DNA helicase RuvB [Neisseria
meningitidis MC58]
sp|Q9JZ86|RUVB_NEIMB Holliday junction DNA helicase ruvB
pir||H81105 Holliday junction DNA helicase RuvB NMB1243 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF41624.1| (AE002472) Holliday junction DNA helicase RuvB [Neisseria
meningitidis MC58]
Length = 343
Score = 59.3 bits (142), Expect = 7e-08
Identities = 61/217 (28%), Positives = 95/217 (43%), Gaps = 35/217 (16%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAYM 60
L L PK+L+D++GQ+ + A +A + + H +GPPG+GKT+LA IIA
Sbjct: 28 LERALRPKTLDDYIGQDKAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTLAHIIA-- 85
Query: 61 LERPILLFNATDFKLE---DLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKD 117
E + L + LE DL L N V+FIDE HRL+ +E L P +E D
Sbjct: 86 KELGVNLRQTSGPVLERAGDLAALLTNLDP---HDVLFIDEIHRLSPVVEEILYPALE-D 141
Query: 118 HAL---------------------ILGASTQDPNYSLSHAIRSR-SFIFELTPLNKSDLD 155
+ L ++GA+T+ L++ +R R + L DL
Sbjct: 142 YRLDIMIGEGPAARSVKIDLPPFTLIGATTRAG--MLTNPLRDRFGIVSRLEFYENRDLT 199
Query: 156 RLCAKALTLLKKQIEPGAKTYLLNNSAGDARALLNLL 192
+ +++ LL+ + + S G R LL
Sbjct: 200 TIVSRSAQLLQLDMSEEGAEEIAKRSRGTPRIANRLL 236
>ref|NP_486934.1| (NC_003272) Holliday junction DNA helicase [Nostoc sp. PCC 7120]
sp|Q8YT32|RUVB_ANASP Holliday junction DNA helicase ruvB
dbj|BAB74593.1| (AP003591) Holliday junction DNA helicase [Nostoc sp. PCC 7120]
Length = 366
Score = 58.9 bits (141), Expect = 1e-07
Identities = 59/213 (27%), Positives = 97/213 (44%), Gaps = 35/213 (16%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAYMLERP 64
+ P+ D++GQ+ L KA +S+ H YGPPG+GKT++A I+A +
Sbjct: 49 IRPQRFADYIGQKDLKDVLDIAIKAAKSRGEVLDHLLLYGPPGLGKTTMAMILASEMGVN 108
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKP--VVFIDETHRLNKTQQEFLLPIMEKDHAL- 120
+ +A + D+ L N LKP ++FIDE HRL++ +E L P ME D+ L
Sbjct: 109 YKITSAPALERPRDIVGLLVN-----LKPGDILFIDEIHRLSRMTEEILYPAME-DYRLD 162
Query: 121 --------------------ILGASTQDPNYSLSHAIRSR-SFIFELTPLNKSDLDRLCA 159
++GA+T+ +L+ +R R I +L +L ++
Sbjct: 163 ITVGKGSSARIRSIPLSKFTLVGATTRVG--ALTSPLRDRFGLIQKLRFYEVDELSQIVL 220
Query: 160 KALTLLKKQIEPGAKTYLLNNSAGDARALLNLL 192
++ LL+ Q+ T + S G R LL
Sbjct: 221 RSAQLLQTQVTDDGATEIARRSRGTPRIANRLL 253
>ref|NP_012602.1| (NC_001142) RFC is a DNA binding protein and ATPase that acts as a
processivity factor for DNA polymerases delta and
epsilon and loads proliferating cell nuclear antigen
(PCNA) on DNA; Rfc2p [Saccharomyces cerevisiae]
sp|P40348|RFC2_YEAST ACTIVATOR 1 41 KD SUBUNIT (REPLICATION FACTOR C 41 KD SUBUNIT)
pir||S45531 replication factor C chain RFC2 - yeast (Saccharomyces cerevisiae)
dbj|BAA05858.1| (D28499) Rfc2 protein [Saccharomyces cerevisiae]
gb|AAC49061.1| (U26028) Rfc2p [Saccharomyces cerevisiae]
emb|CAA89596.1| (Z49568) ORF YJR068w [Saccharomyces cerevisiae]
gb|AAB39294.1| (L47993) ORF YJR068w [Saccharomyces cerevisiae]
Length = 353
Score = 58.5 bits (140), Expect = 1e-07
Identities = 61/216 (28%), Positives = 94/216 (43%), Gaps = 35/216 (16%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP---- 64
PK+L++ Q+H V L K L+S + PH FYGPPG GKTS + L P
Sbjct: 33 PKNLDEVTAQDHAV---TVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMK 89
Query: 65 --ILLFNATDFK-LEDLRLKLKNYQN-TLLKP--------------VVFIDETHRLNKTQ 106
IL NA+D + + +R K+KN+ T+ KP ++ +DE +
Sbjct: 90 SRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADA 149
Query: 107 QEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSD-LDRLCAKALTLL 165
Q L ME + + + + SR F L+ S+ +DR L +
Sbjct: 150 QSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDR-----LRFI 204
Query: 166 KKQ----IEPGAKTYLLNNSAGDARALLNLLDLSAK 197
+Q + G +L+ SAGD R + LL ++K
Sbjct: 205 SEQENVKCDDGVLERILDISAGDLRRGITLLQSASK 240
>ref|NP_625797.1| (NC_003888) holliday junction DNA helicase [Streptomyces coelicolor
A3(2)]
sp|Q9L291|RUVB_STRCO Holliday junction DNA helicase ruvB
emb|CAB70920.1| (AL137778) holliday junction DNA helicase [Streptomyces coelicolor
A3(2)]
Length = 357
Score = 58.5 bits (140), Expect = 1e-07
Identities = 56/213 (26%), Positives = 99/213 (46%), Gaps = 25/213 (11%)
Query: 2 SLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFP--HAFFYGPPGVGKTSLAQIIAY 59
++ + L PK L +F+GQE + + + +A +++ H G PG+GKT+L+ IIA
Sbjct: 27 AVEAALRPKDLGEFIGQEKVREQLDLVLRAARARGATADHVLLSGAPGLGKTTLSMIIAA 86
Query: 60 MLERPILLFNATDFK-LEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDH 118
+E PI + + + DL L + Q V+F+DE HR+++ +E L ME
Sbjct: 87 EMEAPIRITSGPAIQHAGDLAAILSSLQE---GEVLFLDEIHRMSRPAEEMLYMAMEDFR 143
Query: 119 ALIL-----GAST---QDPNYSLSHA----------IRSR-SFIFELTPLNKSDLDRLCA 159
++ GA+ + P ++L A +R R F + ++L+R+
Sbjct: 144 VDVIVGKGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYGPAELERVIH 203
Query: 160 KALTLLKKQIEPGAKTYLLNNSAGDARALLNLL 192
++ LL +I+P + S G R LL
Sbjct: 204 RSAGLLDVEIDPTGAAEIAGRSRGTPRIANRLL 236
>ref|NP_376358.1| (NC_003106) 413aa long hypothetical replication factor C large
subunit [Sulfolobus tokodaii]
dbj|BAB65467.1| (AP000982) 413aa long hypothetical replication factor C large
subunit [Sulfolobus tokodaii]
Length = 413
Score = 58.5 bits (140), Expect = 1e-07
Identities = 52/186 (27%), Positives = 87/186 (45%), Gaps = 13/186 (6%)
Query: 36 HFPHAFFYGPPGVGKTSLAQIIAYMLERPILLFNATDFK-LEDLRLKLKNYQNT-----L 89
++ YGPPGVGKT+LA+ +A + + NA+D + L D+R + T +
Sbjct: 13 NYKAVLLYGPPGVGKTTLAEALARDYKLELFEMNASDSRNLNDIRTMAERASITGTIFGI 72
Query: 90 LKPVVFIDETHRLNKTQQ----EFLLPIMEK-DHALILGASTQDPNYSLSHAIRSRSFIF 144
++ +DE LN + +L ++ K + +IL A+ DP +R+ +
Sbjct: 73 KGKLILLDEVDGLNARADAGAIDAILELINKTKYPIILTAN--DPWDPSLRPLRNAVKMI 130
Query: 145 ELTPLNKSDLDRLCAKALTLLKKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIEDPITL 204
EL L K L R+ K K E A +++ S GDAR +N+L A+ +TL
Sbjct: 131 ELKRLTKYPLKRILKKICEAEKITCEDEALDFIIEQSEGDARYAINMLQGVAEGYGRVTL 190
Query: 205 KTLQSL 210
++L
Sbjct: 191 DMAKNL 196
>ref|NP_288297.1| (NC_002655) Holliday junction helicase subunit A; branch migration;
repair [Escherichia coli O157:H7 EDL933]
ref|NP_310597.1| (NC_002695) Holliday junction helicase subunit A [Escherichia coli
O157:H7]
ref|NP_416374.1| (NC_000913) Holliday junction helicase subunit A; branch migration;
repair [Escherichia coli K12]
sp|P08577|RUVB_ECOLI Holliday junction DNA helicase ruvB
pir||BVECVB DNA-binding protein ruvB - Escherichia coli
emb|CAA30120.1| (X07091) ruvB gene product (AA 1 - 336) [Escherichia coli]
gb|AAA24613.1| (M21298) ruvB protein [Escherichia coli]
dbj|BAA15671.1| (D90829) Holliday junction DNA helicase RuvB. [Escherichia coli]
gb|AAC74930.1| (AE000280) Holliday junction helicase subunit A; branch migration;
repair [Escherichia coli K12]
gb|AAG56850.1|AE005408_8 (AE005408) Holliday junction helicase subunit A; branch migration;
repair [Escherichia coli O157:H7 EDL933]
dbj|BAB35993.1| (AP002559) Holliday junction helicase subunit A [Escherichia coli
O157:H7]
Length = 336
Score = 58.5 bits (140), Expect = 1e-07
Identities = 42/114 (36%), Positives = 59/114 (50%), Gaps = 10/114 (8%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKA--LQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP 64
+ PK LE+++GQ + + KA L+ H +GPPG+GKT+LA I+A E
Sbjct: 23 IRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVAN--EMG 80
Query: 65 ILLFNATDFKLE---DLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115
+ L + LE DL L N + V+FIDE HRL+ +E L P ME
Sbjct: 81 VNLRTTSGPVLEKAGDLAAMLTNLEP---HDVLFIDEIHRLSPVVEEVLYPAME 131
>ref|NP_558807.1| (NC_003364) replication factor C small subunit [Pyrobaculum
aerophilum]
gb|AAL62989.1| (AE009782) replication factor C small subunit [Pyrobaculum
aerophilum]
Length = 329
Score = 58.2 bits (139), Expect = 2e-07
Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 36/210 (17%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIA------YMLE 62
P+S ++ + E + A L + +++ + PH FYGPPG GKT++A ++A Y E
Sbjct: 12 PRSFDEVVDLEEV---KARLREFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGEYWRE 68
Query: 63 RPILLFNATDFKLEDLRLKLKNYQNTLLKPV-------VFIDETHRLNKTQQEFLLPIME 115
+ L + + + +R ++K + T PV V +DE + Q+ L IME
Sbjct: 69 NTLELNASDERGINVIRERVKEFART--APVGKAPFKLVILDEADNMTSDAQQALRRIME 126
Query: 116 ---KDHALILGASTQDPNY--SLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKK--- 167
++ IL A NY + I SR +F +P+ +S L A+ L + K
Sbjct: 127 IYAQNTRFILLA-----NYVSRIIDPIISRCAVFRFSPMPRS----LMAERLKFIAKNEG 177
Query: 168 -QIEPGAKTYLLNNSAGDARALLNLLDLSA 196
++ A + S GD R +NLL ++A
Sbjct: 178 VELREDAINMIYELSEGDMRKAINLLQVAA 207
>ref|NP_284146.1| (NC_003116) putative Holliday junction DNA helicase [Neisseria
meningitidis Z2491]
sp|Q9JUB0|RUVB_NEIMA Holliday junction DNA helicase ruvB
pir||E81910 probable Holliday junction DNA helicase NMA1412 [imported] -
Neisseria meningitidis (group A strain Z2491)
emb|CAB84652.1| (AL162755) putative Holliday junction DNA helicase [Neisseria
meningitidis Z2491]
Length = 343
Score = 58.2 bits (139), Expect = 2e-07
Identities = 43/118 (36%), Positives = 60/118 (50%), Gaps = 10/118 (8%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAYM 60
L L PK+L+D++GQ + A +A + + H +GPPG+GKT+LA IIA
Sbjct: 28 LERALRPKTLDDYIGQHKAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTLAHIIA-- 85
Query: 61 LERPILLFNATDFKLE---DLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115
E + L + LE DL L N V+FIDE HRL+ +E L P +E
Sbjct: 86 KELGVNLRQTSGPVLERAGDLAALLTNLDP---HDVLFIDEIHRLSPVVEEILYPALE 140
>ref|NP_638370.1| (NC_003902) holliday junction binding protein, DNA helicase
[Xanthomonas campestris pv. campestris str. ATCC 33913]
gb|AAM42294.1| (AE012415) holliday junction binding protein, DNA helicase
[Xanthomonas campestris pv. campestris str. ATCC 33913]
Length = 346
Score = 58.2 bits (139), Expect = 2e-07
Identities = 39/112 (34%), Positives = 59/112 (51%), Gaps = 6/112 (5%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAYMLERP 64
+ PK L D+LGQ+ + + +A +++ H +GPPG+GKT+L+ +IA L
Sbjct: 22 IRPKRLADYLGQQPVRDQMEIYIQAAKARGEAMDHVLIFGPPGLGKTTLSHVIANELGVS 81
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115
+ + + K DL L N Q V+FIDE HRL+ +E L P ME
Sbjct: 82 LRVTSGPVIEKAGDLAALLTNLQP---HDVLFIDEIHRLSPVVEEVLYPAME 130
>ref|NP_240900.1| (NC_002570) DNA polymerase III gamma and tau subunits [Bacillus
halodurans]
dbj|BAB03753.1| (AP001507) DNA polymerase III gamma and tau subunits [Bacillus
halodurans]
Length = 564
Score = 57.8 bits (138), Expect = 2e-07
Identities = 75/316 (23%), Positives = 134/316 (41%), Gaps = 50/316 (15%)
Query: 2 SLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAF-FYGPPGVGKTSLAQIIAY- 59
+L + P+ L+D +GQEH+ L AL + F HA+ F GP G GKTS A+IIA
Sbjct: 5 ALYRVWRPQKLQDVVGQEHIT---KTLQNALVQEKFSHAYLFSGPRGTGKTSAAKIIAKA 61
Query: 60 ----------------------------MLERPILLFNATDFKLEDLRLKLKNYQNTLLK 91
++E N D ++ D+R +K + +
Sbjct: 62 INCEQAPIAEPCNECRACKGITSGSIVDVMEIDAASNNGVD-EIRDIRDHVKFAPSEVRY 120
Query: 92 PVVFIDETHRLNKTQQEFLLPIMEK--DHALILGASTQDPNYSLSHAIRSRSFIFELTPL 149
V IDE H L LL +E+ HA+ + A+T+ L+ I SR F+ +
Sbjct: 121 KVYIIDEVHMLTTGAFNALLKTLEEPPSHAIFILATTEPHKIPLT--IISRCQRFDFKRI 178
Query: 150 NKSDLDRLCAKALTLLKKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIEDP-ITLKTLQ 208
+ L + LT + E A + + G R L+LLD + D +T++ +
Sbjct: 179 SNDALVGRMKEILTHEGIEAEDEALVLVARAAEGGMRDSLSLLDQAISFADERVTVEDVL 238
Query: 209 SLRPHSLNDGSYSDDTHYNLTSALIKSLRGSDENASIYYLARLIAGGENP-EFIARRLVI 267
++ G+ S + + + +++S + + ++ + +L+A G++P F+ +
Sbjct: 239 AI------TGAVS----HEVLTQVVESAQKGETAEALQLVNQLLANGKDPLRFVEDLIYY 288
Query: 268 FASEDIGNANPNALNL 283
+ + A P A L
Sbjct: 289 YRDLMLFKAAPEASQL 304
>ref|NP_070884.1| (NC_000917) activator 1, replication factor C, 35 KD subunit
[Archaeoglobus fulgidus]
pir||C69507 activator 1, replication factor C, 35 KD subunit homolog -
Archaeoglobus fulgidus
gb|AAB89191.1| (AE000961) activator 1, replication factor C, 35 KD subunit
[Archaeoglobus fulgidus]
Length = 319
Score = 57.8 bits (138), Expect = 2e-07
Identities = 58/229 (25%), Positives = 100/229 (43%), Gaps = 28/229 (12%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYML-----ER 63
P++L++ +GQ+ ++ + L ++ K+ PH F GPPG GKT+ A +A L
Sbjct: 13 PRTLDEVVGQDEVIQR---LKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRD 69
Query: 64 PILLFNATDFK-LEDLRLKLKNYQNT-----LLKPVVFIDETHRLNKTQQEFLLPIME-- 115
+ NA+D + ++ +R K+K + T ++F+DE L Q L ME
Sbjct: 70 NFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMY 129
Query: 116 -KDHALILGASTQDPNY--SLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIEPG 172
K IL NY + I+SR +F P+ K + + + +I
Sbjct: 130 SKSCRFILSC-----NYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITED 184
Query: 173 AKTYLLNNSAGDARALLNLLDLSAKIEDPITLKTLQSL----RPHSLND 217
L+ S GD R +N L +A I + + T+ + RP + +
Sbjct: 185 GLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQITATARPEEMTE 233
>ref|NP_645250.1| (NC_003923) DNA polymerase III gamma and tau subunits
[Staphylococcus aureus subsp. aureus MW2]
dbj|BAB94298.1| (AP004823) DNA polymerase III gamma and tau subunits
[Staphylococcus aureus subsp. aureus MW2]
Length = 565
Score = 57.8 bits (138), Expect = 2e-07
Identities = 77/310 (24%), Positives = 129/310 (40%), Gaps = 55/310 (17%)
Query: 2 SLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAF-FYGPPGVGKTSLAQIIAYM 60
+L + P+S ED +GQEH+ L A+ + HA+ F GP G GKTS+A++ A
Sbjct: 5 ALYRMYRPQSFEDVVGQEHVT---KTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFA-- 59
Query: 61 LERPILLFNATD--------------------------------FKLEDLRLKLKNYQNT 88
+ I N+TD ++ ++R K+K +
Sbjct: 60 --KAINCLNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSE 117
Query: 89 LLKPVVFIDETHRLNKTQQEFLLPIMEKD--HALILGASTQDPNYSLSHAIRSRSFIFEL 146
L V IDE H L LL +E+ HA+ + A+T+ + R++ F F+
Sbjct: 118 LKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKA 177
Query: 147 TPLNKSDLDRLCAKALTLLKKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIEDPITLKT 206
LN+ ++RL A + + E A ++ S G R L+++D + D T
Sbjct: 178 ISLNQI-VERLKFVA-DAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTL--T 233
Query: 207 LQSLRPHSLN-DGSYSDDTHYNLTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRL 265
LQ +LN GS D+ +L +++ D AS + I G+ + +
Sbjct: 234 LQD----ALNVTGSVHDEALDHLFDDIVQ----GDVQASFKKYHQFITEGKEVNRLINDM 285
Query: 266 VIFASEDIGN 275
+ F + I N
Sbjct: 286 IYFVRDTIMN 295
>ref|NP_643455.1| (NC_003919) holliday junction binding protein DNA helicase
[Xanthomonas axonopodis pv. citri str. 306]
gb|AAM37991.1| (AE011958) holliday junction binding protein DNA helicase
[Xanthomonas axonopodis pv. citri str. 306]
Length = 346
Score = 57.8 bits (138), Expect = 2e-07
Identities = 39/112 (34%), Positives = 59/112 (51%), Gaps = 6/112 (5%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAYMLERP 64
+ PK L D+LGQ+ + + +A +++ H +GPPG+GKT+L+ +IA L
Sbjct: 22 IRPKRLADYLGQQPVREQMEIYIQAAKARGEAMDHVLIFGPPGLGKTTLSHVIANELGVS 81
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115
+ + + K DL L N Q V+FIDE HRL+ +E L P ME
Sbjct: 82 LRVTSGPVIEKAGDLAALLTNLQP---HDVLFIDEIHRLSPVVEEVLYPAME 130
>ref|NP_390651.1| (NC_000964) Holliday junction resolvasome helicase subunit
[Bacillus subtilis]
Length = 336
Score = 57.4 bits (137), Expect = 3e-07
Identities = 42/117 (35%), Positives = 65/117 (54%), Gaps = 16/117 (13%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLF---KALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLER 63
L P++L ++GQ H V ++ +F ++ + H YGPPG+GKT+LA I+A E
Sbjct: 23 LRPQNLAQYIGQ-HKVKENLRVFIDAAKMRQETLDHVLLYGPPGLGKTTLASIVAN--EM 79
Query: 64 PILLFNATDFKLE---DLRLKLKNYQNTLLKP--VVFIDETHRLNKTQQEFLLPIME 115
+ + + +E DL L T L+P V+FIDE HRL+++ +E L P ME
Sbjct: 80 GVXMRTTSGPAIERPGDLAAIL-----TALEPGDVLFIDEIHRLHRSIEEVLYPAME 131
>sp|O32055|RUVB_BACSU Holliday junction DNA helicase ruvB
emb|CAB75331.1| (Y15896) RuvB protein [Bacillus subtilis]
Length = 334
Score = 57.4 bits (137), Expect = 3e-07
Identities = 43/117 (36%), Positives = 65/117 (54%), Gaps = 16/117 (13%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLF---KALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLER 63
L P++L ++GQ H V ++ +F ++ + H YGPPG+GKT+LA I+A E
Sbjct: 21 LRPQNLAQYIGQ-HKVKENLRVFIDAAKMRQETLDHVLLYGPPGLGKTTLASIVAN--EM 77
Query: 64 PILLFNATDFKLE---DLRLKLKNYQNTLLKP--VVFIDETHRLNKTQQEFLLPIME 115
+ L + +E DL L T L+P V+FIDE HRL+++ +E L P ME
Sbjct: 78 GVELRTTSGPAIERPGDLAAIL-----TALEPGDVLFIDEIHRLHRSIEEVLYPAME 129
>pir||JC5477 DNA-binding protein ruvB - Pseudomonas aeruginosa
Length = 352
Score = 57.0 bits (136), Expect = 4e-07
Identities = 59/217 (27%), Positives = 94/217 (43%), Gaps = 35/217 (16%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAYM 60
L + P L D++GQ + + A + + H +GPPG+GKT+LA IIA
Sbjct: 20 LDRAIRPLKLADYIGQPSVREQMELFIHAARGRQEALDHTLIFGPPGLGKTTLANIIAQ- 78
Query: 61 LERPILLFNATDFKLE---DLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKD 117
E + + + + LE DL L N + V+F+DE HRL+ +E L P ME D
Sbjct: 79 -EMGVSIKSTSGPVLERPGDLAALLTNLE---AGDVLFVDEIHRLSPIVEEVLYPAME-D 133
Query: 118 HAL---------------------ILGASTQDPNYSLSHAIRSR-SFIFELTPLNKSDLD 155
L ++GA+T+ L++ +R R + L N DL
Sbjct: 134 FQLDIMIGEGPAVRSIKLDLPPFTLVGATTRAG--MLTNPLRDRFGIVQRLEFYNVEDLA 191
Query: 156 RLCAKALTLLKKQIEPGAKTYLLNNSAGDARALLNLL 192
+ +++ +L +IEP + + G R LL
Sbjct: 192 TIVSRSAGILGLEIEPQGAAEIAKRARGTPRIANRLL 228
>ref|NP_442280.1| (NC_000911) Holliday junction DNA helicase; RuvB [Synechocystis sp.
PCC 6803]
sp|Q57396|RUVB_SYNY3 Holliday junction DNA helicase ruvB
pir||S76504 DNA-binding protein ruvB - Synechocystis sp. (strain PCC 6803)
dbj|BAA10350.1| (D64002) Holliday junction DNA helicase; RuvB [Synechocystis sp.
PCC 6803]
gb|AAA96396.1| (U38892) RuvB [Synechocystis sp.]
Length = 361
Score = 57.0 bits (136), Expect = 4e-07
Identities = 57/213 (26%), Positives = 88/213 (40%), Gaps = 35/213 (16%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAYMLERP 64
L P+ L D++GQ L +A Q + H YGPPG+GKT+LA I+A ++
Sbjct: 42 LRPQRLADYIGQRDLKEVLRIAIQAAQGRQEAIDHLLLYGPPGLGKTTLALILAEEMQVR 101
Query: 65 ILLFNATDFK----LEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEK---- 116
+ A + + L L L+ ++FIDE HRLN+ +E L P ME
Sbjct: 102 CKITAAPALERPRDITGLLLALQP------GDILFIDEIHRLNRLTEELLYPAMEDFRLD 155
Query: 117 ----------------DHALILGASTQDPNYSLSHAIRSR-SFIFELTPLNKSDLDRLCA 159
H ++GA+T+ SL+ +R R I L +L ++
Sbjct: 156 ITMGKGQSAKVRSLKLAHFTLVGATTKVG--SLTSPLRDRFGLIQRLRFYEVDELQQIIL 213
Query: 160 KALTLLKKQIEPGAKTYLLNNSAGDARALLNLL 192
+ +L I P + + G R LL
Sbjct: 214 RTAGILSVSISPTGAEAIAMRARGTPRIANRLL 246
>ref|NP_249658.1| (NC_002516) Holliday junction DNA helicase RuvB [Pseudomonas
aeruginosa]
sp|Q51426|RUVB_PSEAE Holliday junction DNA helicase ruvB
pir||A83525 Holliday junction DNA helicase RuvB PA0967 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG04356.1|AE004530_9 (AE004530) Holliday junction DNA helicase RuvB [Pseudomonas
aeruginosa]
Length = 352
Score = 57.0 bits (136), Expect = 4e-07
Identities = 59/217 (27%), Positives = 94/217 (43%), Gaps = 35/217 (16%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAYM 60
L + P L D++GQ + + A + + H +GPPG+GKT+LA IIA
Sbjct: 20 LDRAIRPLKLADYIGQPSVREQMELFIHAARGRQEALDHTLIFGPPGLGKTTLANIIAQ- 78
Query: 61 LERPILLFNATDFKLE---DLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKD 117
E + + + + LE DL L N + V+F+DE HRL+ +E L P ME D
Sbjct: 79 -EMGVSIKSTSGPVLERPGDLAALLTNLE---AGDVLFVDEIHRLSPIVEEVLYPAME-D 133
Query: 118 HAL---------------------ILGASTQDPNYSLSHAIRSR-SFIFELTPLNKSDLD 155
L ++GA+T+ L++ +R R + L N DL
Sbjct: 134 FQLDIMIGEGPAARSIKLDLPPFTLVGATTRAG--MLTNPLRDRFGIVQRLEFYNVEDLA 191
Query: 156 RLCAKALTLLKKQIEPGAKTYLLNNSAGDARALLNLL 192
+ +++ +L +IEP + + G R LL
Sbjct: 192 TIVSRSAGILGLEIEPQGAAEIAKRARGTPRIANRLL 228
>ref|NP_653973.1| (NC_003995) AAA, ATPase family associated with various cellular
activities (AAA) [Bacillus anthracis A2012] [Bacillus
anthracis str. A2012]
Length = 562
Score = 57.0 bits (136), Expect = 4e-07
Identities = 66/283 (23%), Positives = 122/283 (42%), Gaps = 49/283 (17%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAF-FYGPPGVGKTSLAQI----------- 56
P+ ED +GQ+H+ L AL + HA+ F GP G GKT++A++
Sbjct: 12 PQKFEDVVGQKHVT---KTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAP 68
Query: 57 ------------------IAYMLERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFIDE 98
I+ +LE N D ++ D+R K+K + + V IDE
Sbjct: 69 VAEPCNECPSCLGITQGSISDVLEIDAASNNGVD-EIRDIRDKVKYAPSAVEYKVYIIDE 127
Query: 99 THRLNKTQQEFLLPIMEK--DHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDR 156
H L+ LL +E+ H + + A+T+ + + I SR FE ++ +D+
Sbjct: 128 VHMLSMGAFNALLKTLEEPPGHVIFILATTEP--HKIPPTIISRCQRFEFRKISVNDIVE 185
Query: 157 LCAKALTLLKKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIEDP-ITLKTLQSLRPHSL 215
+ +T Q+E A + + G R L+L+D + D +T + + ++
Sbjct: 186 RLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDERVTTEDVLAV----- 240
Query: 216 NDGSYSDDTHYNLTSALIKSLRGSDENASIYYLARLIAGGENP 258
GS S N L++ +R +D + ++ + ++ G++P
Sbjct: 241 -TGSVSQQYLGN----LVECIRENDVSRALRIIDEMMGKGKDP 278
>dbj|BAA11819.1| (D83138) Holliday junction specific DNA helicase [Pseudomonas
aeruginosa]
Length = 352
Score = 57.0 bits (136), Expect = 4e-07
Identities = 59/217 (27%), Positives = 94/217 (43%), Gaps = 35/217 (16%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAYM 60
L + P L D++GQ + + A + + H +GPPG+GKT+LA IIA
Sbjct: 20 LDRAIRPLKLADYIGQPSVREQMELFIHAARGRQEALDHTLIFGPPGLGKTTLANIIAQ- 78
Query: 61 LERPILLFNATDFKLE---DLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKD 117
E + + + + LE DL L N + V+F+DE HRL+ +E L P ME D
Sbjct: 79 -EMGVSIKSTSGPVLERPGDLAALLTNLE---AGDVLFVDEIHRLSPIVEEVLYPAME-D 133
Query: 118 HAL---------------------ILGASTQDPNYSLSHAIRSR-SFIFELTPLNKSDLD 155
L ++GA+T+ L++ +R R + L N DL
Sbjct: 134 FQLDIMIGEGPAGRSIKLDLPPFTLVGATTRAG--MLTNPLRDRFGIVQRLEFYNVEDLA 191
Query: 156 RLCAKALTLLKKQIEPGAKTYLLNNSAGDARALLNLL 192
+ +++ +L +IEP + + G R LL
Sbjct: 192 TIVSRSAGILGLEIEPQGAAEIAKRARGTPRIANRLL 228
>ref|NP_559445.1| (NC_003364) replication factor C small subunit [Pyrobaculum
aerophilum]
gb|AAL63627.1| (AE009832) replication factor C small subunit [Pyrobaculum
aerophilum]
Length = 319
Score = 56.6 bits (135), Expect = 5e-07
Identities = 58/234 (24%), Positives = 102/234 (42%), Gaps = 32/234 (13%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIA------YMLE 62
P+S ++ + E + A L + +++ + PH FYGPPG GKT++A ++A Y E
Sbjct: 12 PRSFDEVVDLEEV---KARLRQFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGEYWRE 68
Query: 63 RPILLFNATDFKLEDLRLKLKNYQNTLLKPV-------VFIDETHRLNKTQQEFLLPIME 115
+ L + + + +R ++K + T PV V +DE + Q+ L IME
Sbjct: 69 NTLELNASDERGINVIRERVKEFART--APVGKAPFKLVILDEADNMTSDAQQALRRIME 126
Query: 116 ---KDHALILGASTQDPNY--SLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIE 170
++ IL A NY + I+SR+ + +PL K + ++
Sbjct: 127 IYAQNTRFILLA-----NYVSGIIEPIQSRTVMIRFSPLPKEAVFARLRYIAENEGVKVS 181
Query: 171 PGAKTYLLNNSAGDARALLNLLDLSAKIEDPIT----LKTLQSLRPHSLNDGSY 220
A + + GD R +N L ++A + +T K L + P L + Y
Sbjct: 182 DDALEAIYEFTQGDMRRAINALQIAATVSKAVTEEVVAKALGMVSPRLLRETLY 235
>ref|NP_002907.1| (NM_002916) replication factor C (activator 1) 4 (37kD) [Homo
sapiens]
sp|P35249|AC12_HUMAN Activator 1 37 kDa subunit (Replication factor C 37 kDa subunit)
(A1 37 kDa subunit) (RF-C 37 kDa subunit) (RFC37)
gb|AAB09785.1| (M87339) replication factor C, 37-kDa subunit [Homo sapiens]
gb|AAH17452.1|AAH17452 (BC017452) replication factor C (activator 1) 4 (37kD) [Homo
sapiens]
gb|AAH24022.1| (BC024022) replication factor C (activator 1) 4 (37kD) [Homo
sapiens]
Length = 363
Score = 56.2 bits (134), Expect = 6e-07
Identities = 60/213 (28%), Positives = 91/213 (42%), Gaps = 30/213 (14%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP---- 64
PK +++ QE +V A L K+L+ P+ FYGPPG GKTS A L P
Sbjct: 46 PKCVDEVAFQEEVV---AVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFR 102
Query: 65 --ILLFNATDFK-LEDLRLKLKNYQNTLL-------KP-----VVFIDETHRLNKTQQEF 109
+L NA+D + ++ +R K+KN+ + KP +V +DE + Q
Sbjct: 103 LRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAA 162
Query: 110 LLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPL-NKSDLDRLCAKALTLLKKQ 168
L MEK+ + + + SR F PL +K RL L + KK+
Sbjct: 163 LRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRL----LDIAKKE 218
Query: 169 ---IEPGAKTYLLNNSAGDARALLNLLDLSAKI 198
I YL+ S GD R + L + ++
Sbjct: 219 NVKISDEGIAYLVKVSEGDLRKAITFLQSATRL 251
>ref|XP_113422.1| (XM_113422) replication factor C (activator 1) 4 (37kD) [Homo
sapiens]
Length = 363
Score = 56.2 bits (134), Expect = 6e-07
Identities = 60/213 (28%), Positives = 91/213 (42%), Gaps = 30/213 (14%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP---- 64
PK +++ QE +V A L K+L+ P+ FYGPPG GKTS A L P
Sbjct: 46 PKCVDEVAFQEEVV---AVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFR 102
Query: 65 --ILLFNATDFK-LEDLRLKLKNYQNTLL-------KP-----VVFIDETHRLNKTQQEF 109
+L NA+D + ++ +R K+KN+ + KP +V +DE + Q
Sbjct: 103 LRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAA 162
Query: 110 LLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPL-NKSDLDRLCAKALTLLKKQ 168
L MEK+ + + + SR F PL +K RL L + KK+
Sbjct: 163 LRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRL----LDIAKKE 218
Query: 169 ---IEPGAKTYLLNNSAGDARALLNLLDLSAKI 198
I YL+ S GD R + L + ++
Sbjct: 219 NVKISDEGIAYLVKVSEGDLRKAITFLQSATRL 251
>pir||A45253 activator 1 37K chain - human
Length = 363
Score = 56.2 bits (134), Expect = 6e-07
Identities = 60/213 (28%), Positives = 92/213 (43%), Gaps = 30/213 (14%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP---- 64
PK +++ QE +V A L K+L+ P+ FYGPPG GKTS A L P
Sbjct: 46 PKCVDEVAFQEEVV---AVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFR 102
Query: 65 --ILLFNATDFK-LEDLRLKLKNYQNTLL-------KP-----VVFIDETHRLNKTQQEF 109
+L NA+D + ++ +R K+KN+ + KP +V +DE + Q
Sbjct: 103 LRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAA 162
Query: 110 LLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPL-NKSDLDRLCAKALTLLKKQ 168
L MEK+ + + + SR F PL +K RL L + KK+
Sbjct: 163 LRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRL----LDIAKKE 218
Query: 169 IEPGAK---TYLLNNSAGDARALLNLLDLSAKI 198
P + YL+ S GD R + L + ++
Sbjct: 219 NVPISHRGIAYLVKVSEGDLRKAITFLQSATRL 251
>ref|NP_584594.1| (NC_003229) DNA REPLICATION FACTOR (ACTIVATOR 1) 36 kDa SUBUNIT
[Encephalitozoon cuniculi]
emb|CAD25098.1| (AL590442) DNA REPLICATION FACTOR (ACTIVATOR 1) 36 kDa SUBUNIT
[Encephalitozoon cuniculi]
Length = 283
Score = 55.8 bits (133), Expect = 8e-07
Identities = 48/162 (29%), Positives = 72/162 (43%), Gaps = 11/162 (6%)
Query: 1 MSLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYM 60
M T PKS + F G EHL + + + P+ YGPPG GKT+ A ++A
Sbjct: 1 MLWTEKYRPKSTDAFEGPEHLKN----ILRNSSGRGHPNLLLYGPPGTGKTTFAHLLASQ 56
Query: 61 LERPILLFNATDFK-LEDLRLKLKNYQNTLLK-PVVFIDETHRLNKTQQEFLLPIMEKDH 118
L NA+D + + +R K+K Y +TL K V +DE L Q L ++E
Sbjct: 57 K----LELNASDERGISVIREKIKVYASTLGKDKTVILDECENLTSDAQHCLRRVIEDSV 112
Query: 119 ALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAK 160
T P+ + +RSR + TP L+ + +K
Sbjct: 113 NTRFIFITNYPS-KIIGPLRSRLVSVKFTPTESKILENIGSK 153
>sp|P34429|AC11_CAEEL Putative activator 1 36 kDa subunit (Replication factor C 36 kDa
subunit) (A1 36 kDa subunit) (RF-C 36 kDa subunit)
(RFC36)
pir||S44809 F44B9.8 protein - Caenorhabditis elegans
Length = 447
Score = 55.8 bits (133), Expect = 8e-07
Identities = 56/240 (23%), Positives = 100/240 (41%), Gaps = 41/240 (17%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP---- 64
P L++ + E +V + K ++++ PH FYGPPG GKT+ A + P
Sbjct: 37 PSKLDELVAHEQIVKTYILVTKFIENRTLPHLLFYGPPGTGKTTTVLAAARQMYSPTKMA 96
Query: 65 --ILLFNATDFK-LEDLRLKLKNY------------QNTLLKP--VVFIDETHRLNKTQQ 107
+L NA+D + ++ +R + N+ NT P +V +DE + K Q
Sbjct: 97 SMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTVPFKLVILDEADAMTKDAQ 156
Query: 108 EFLLPIMEKDHA------------LILGASTQDPNY--------SLSHAIRSRSFIFELT 147
L + + D+ ++ T + + S+ AI+SR F
Sbjct: 157 NALRRLDKTDYEQNIIIHNVNIYFRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFA 216
Query: 148 PLNKSDLDRLCAKALTLLKKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIEDPITLKTL 207
PL++ + + + ++ P K LL S GD R ++N L +A D ++ T+
Sbjct: 217 PLDQKLIVPRLEYIVETEQLKMTPDGKDALLIVSKGDMRTVINTLQSTAMSFDTVSENTV 276
>gb|AAB82595.1| (AF025391) DNA polymerase III holoenzyme tau subunit [Thermus
thermophilus]
Length = 529
Score = 55.5 bits (132), Expect = 1e-06
Identities = 59/229 (25%), Positives = 105/229 (45%), Gaps = 34/229 (14%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAF-FYGPPGVGKTSLAQIIAYML----ER 63
P + ++ +GQEH+ PL KA++ A+ F GP GVGKT+ A+++A + E
Sbjct: 10 PLTFQEVVGQEHV---KEPLLKAIREGRLAQAYLFSGPRGVGKTTTARLLAMAVGCQGED 66
Query: 64 P-------------------ILLFNATDFKLEDLR-LKLKNYQNTLLKP--VVFIDETHR 101
P + + A++ +ED+R L+ + + L P V +DE H
Sbjct: 67 PPCGVCPHCQAVQRGAHPDVVEIDAASNNSVEDVRELRERIHLAPLSAPRKVFILDEAHM 126
Query: 102 LNKTQQEFLLPIMEK--DHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCA 159
L+K+ LL +E+ H L + A+T+ + I SR+ F L + ++
Sbjct: 127 LSKSAFNALLKTLEEPPPHVLFVFATTEPER--MPPTILSRTQHFRFRRLTEEEIAFKLR 184
Query: 160 KALTLLKKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIEDPITLKTLQ 208
+ L + ++ E A L + G R +LL+ +E P+T K ++
Sbjct: 185 RILEAVGREAEEEALLLLARLADGALRDAESLLERFLLLEGPLTRKEVE 233
>gb|AAF52944.1| (AE003628) RfC3 gene product [Drosophila melanogaster]
Length = 297
Score = 55.1 bits (131), Expect = 1e-06
Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 12/177 (6%)
Query: 38 PHAFFYGPPGVGKTSLAQIIAYMLERP------ILLFNATDFK-LEDLRLKLKNYQNTL- 89
PH FYGPPG GKTS A L P +L NA+D + + +R ++ N+ +T
Sbjct: 10 PHLLFYGPPGTGKTSTILACARQLYSPQQFKSMVLELNASDDRGIGIVRGQILNFASTRT 69
Query: 90 ----LKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFE 145
++ +DE + Q L I+EK + + + A++SR F
Sbjct: 70 IFCDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFR 129
Query: 146 LTPLNKSDLDRLCAKALTLLKKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIEDPI 202
PL++ + K + QI K LL + GD R +LN+L + D +
Sbjct: 130 FAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVLQSTVMAFDTV 186
>ref|XP_148470.1| (XM_148470) similar to CG8142 gene product [Mus musculus]
Length = 370
Score = 55.1 bits (131), Expect = 1e-06
Identities = 68/259 (26%), Positives = 113/259 (43%), Gaps = 39/259 (15%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP---- 64
PK +++ Q+ +V A L K+L+ P+ FYGPPG GKTS A L P
Sbjct: 46 PKCVDEVAFQDEVV---AVLRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFR 102
Query: 65 --ILLFNATDFK-LEDLRLKLKNYQNTLL-------KP-----VVFIDETHRLNKTQQEF 109
+L NA+D + ++ +R K+KN+ + KP +V +DE + Q
Sbjct: 103 LRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAA 162
Query: 110 LLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPL-NKSDLDRLCAKALTLLKKQ 168
L MEK+ + + + SR F PL +K +RL A K+
Sbjct: 163 LRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIA---EKEN 219
Query: 169 IEPGAK--TYLLNNSAGDARALLNLLDLSAKI-------EDPITLKTLQSLRPHSLNDGS 219
++ G + YL+ S GD R + L + ++ ED IT + + P + DG
Sbjct: 220 VKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVIT--DIAGVIPAATIDGI 277
Query: 220 YS--DDTHYNLTSALIKSL 236
++ ++ A++K+L
Sbjct: 278 FTACHSGSFDKLEAVVKNL 296
>gb|AAH03335.1|AAH03335 (BC003335) Similar to replication factor C (activator 1) 4 (37kD)
[Mus musculus]
Length = 364
Score = 55.1 bits (131), Expect = 1e-06
Identities = 68/259 (26%), Positives = 113/259 (43%), Gaps = 39/259 (15%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP---- 64
PK +++ Q+ +V A L K+L+ P+ FYGPPG GKTS A L P
Sbjct: 46 PKCVDEVAFQDEVV---AVLRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFR 102
Query: 65 --ILLFNATDFK-LEDLRLKLKNYQNTLL-------KP-----VVFIDETHRLNKTQQEF 109
+L NA+D + ++ +R K+KN+ + KP +V +DE + Q
Sbjct: 103 LRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAA 162
Query: 110 LLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPL-NKSDLDRLCAKALTLLKKQ 168
L MEK+ + + + SR F PL +K +RL A K+
Sbjct: 163 LRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIA---EKEN 219
Query: 169 IEPGAK--TYLLNNSAGDARALLNLLDLSAKI-------EDPITLKTLQSLRPHSLNDGS 219
++ G + YL+ S GD R + L + ++ ED IT + + P + DG
Sbjct: 220 VKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVIT--DIAGVIPAATIDGI 277
Query: 220 YS--DDTHYNLTSALIKSL 236
++ ++ A++K+L
Sbjct: 278 FTACHSGSFDKLEAVVKNL 296
>ref|NP_658448.1| (NC_003995) AAA, ATPase family associated with various cellular
activities (AAA) [Bacillus anthracis A2012] [Bacillus
anthracis str. A2012]
Length = 333
Score = 55.1 bits (131), Expect = 1e-06
Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 14/116 (12%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKA--LQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP 64
L P++L ++GQ+ +A ++ + H YGPPG+GKT+LA IIA E
Sbjct: 21 LRPQTLRQYIGQDKAKHNLEVFIEAAKMREETLDHVLLYGPPGLGKTTLANIIAN--EMG 78
Query: 65 ILLFNATDFKLE---DLRLKLKNYQNTLLKP--VVFIDETHRLNKTQQEFLLPIME 115
+ + + +E DL L T L+P V+FIDE HRL+++ +E L P ME
Sbjct: 79 VNVRTTSGPAIERPGDLAAVL-----TSLQPGDVLFIDEIHRLHRSIEEVLYPAME 129
>ref|NP_073030.1| (NC_000908) Holliday junction DNA helicase (ruvB) [Mycoplasma
genitalium]
sp|Q49425|RUVB_MYCGE Holliday junction DNA helicase ruvB
pir||G64239 Holliday junction DNA helicase ruvB homolog - Mycoplasma genitalium
gb|AAC71584.1| (U39717) Holliday junction DNA helicase (ruvB) [Mycoplasma
genitalium]
Length = 307
Score = 55.1 bits (131), Expect = 1e-06
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 12/113 (10%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKA--LQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERPIL 66
P + ++F+G++ ++ + KA L H YGPPGVGKT+LA++IA L+ +
Sbjct: 8 PNTFDEFVGKQEIISQIQLSIKASKLNKTQLDHILLYGPPGVGKTTLARLIANELKTKLQ 67
Query: 67 LFNATDFKLEDLRLKLKNYQN--TLLK--PVVFIDETHRLNKTQQEFLLPIME 115
+ + K ++ N +L+K V+FIDE H + E + P+M+
Sbjct: 68 IIQGGHLQ------KPSDFLNAISLIKKGDVLFIDEIHAVAPNVMELMYPVMD 114
>ref|NP_597056.1| (NC_003238) REPLICATION FACTOR C (ACTIVATOR 1) 37kDa SUBUNIT
[Encephalitozoon cuniculi]
emb|CAD27104.1| (AL590451) REPLICATION FACTOR C (ACTIVATOR 1) 37kDa SUBUNIT
[Encephalitozoon cuniculi]
Length = 309
Score = 54.7 bits (130), Expect = 2e-06
Identities = 54/215 (25%), Positives = 99/215 (45%), Gaps = 23/215 (10%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYML- 61
L + P ++D +G E + + + ++S+ PH F GPPG GKT+ A+I+A L
Sbjct: 4 LVNKYQPSEIQDIVGNEATMELVSLM---IESRDMPHLLFTGPPGTGKTTCAKILARRLL 60
Query: 62 --ERPILLFNATDFK-LEDLRLKLKNYQNTLLK----PVVFIDETHRLNKTQQEFLLPIM 114
+ +L NA+D + ++ +R +K++ +K ++ +DE + T Q+ + +M
Sbjct: 61 GNKEGLLELNASDERGIDTVRTTIKSFAQRRVKDCEFKIIILDEADSMTTTAQQAMRRVM 120
Query: 115 EKDHA-----LILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQI 169
E + LI T+ + I+SR I + +S + + + +I
Sbjct: 121 EIHSSECRFILICNVFTK-----IFEPIQSRCAILRFDRIEQSVILKRLKEISEGEGIRI 175
Query: 170 EPGAKTYLLNNSAGDARALLNLLDLSAKIEDPITL 204
A ++ S GD R LN+ L A I P T+
Sbjct: 176 TAEALDLVVELSDGDMRQSLNI--LQACINSPGTV 208
>ref|NP_498750.1| (NM_066349) ARPA [Caenorhabditis elegans]
gb|AAK95878.1|L23648_8 (L23648) Hypothetical protein F44B9.8 [Caenorhabditis elegans]
Length = 388
Score = 54.7 bits (130), Expect = 2e-06
Identities = 57/240 (23%), Positives = 100/240 (40%), Gaps = 44/240 (18%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP---- 64
P L++ + E +V L K ++++ PH FYGPPG GKT+ A + P
Sbjct: 37 PSKLDELVAHEQIV---KTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARQMYSPTKMA 93
Query: 65 --ILLFNATDFK-LEDLRLKLKNY------------QNTLLKP--VVFIDETHRLNKTQQ 107
+L NA+D + ++ +R + N+ NT P +V +DE + K Q
Sbjct: 94 SMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTVPFKLVILDEADAMTKDAQ 153
Query: 108 EFLLPIMEKDHA------------LILGASTQDPNY--------SLSHAIRSRSFIFELT 147
L + + D+ ++ T + + S+ AI+SR F
Sbjct: 154 NALRRLDKTDYEQNIIIHNVNIYFRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFA 213
Query: 148 PLNKSDLDRLCAKALTLLKKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIEDPITLKTL 207
PL++ + + + ++ P K LL S GD R ++N L +A D ++ T+
Sbjct: 214 PLDQKLIVPRLEYIVETEQLKMTPDGKDALLIVSKGDMRTVINTLQSTAMSFDTVSENTV 273
>ref|NP_662513.1| (NC_002932) Holliday junction DNA helicase RuvB [Chlorobium tepidum
TLS]
gb|AAM72855.1| (AE012918) Holliday junction DNA helicase RuvB [Chlorobium tepidum
TLS]
Length = 344
Score = 54.7 bits (130), Expect = 2e-06
Identities = 67/265 (25%), Positives = 108/265 (40%), Gaps = 42/265 (15%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAYMLERP 64
+ P+ + DF GQ+ L+ A + + H GPPG+GKT+LA IIA +
Sbjct: 21 IRPQKMGDFAGQKKLIDNLKVFITAARKRGEALDHVLLSGPPGLGKTTLAHIIAAEMGGS 80
Query: 65 ILLFNATDFKLEDLRLKLKNYQNTLLK-PVVFIDETHRLNKTQQEFLLPIMEK------- 116
I + T L D L ++ K ++FIDE HRL +E+L ME
Sbjct: 81 IKI---TSGPLIDKAGNLAGLLTSMKKGDILFIDEIHRLAPAVEEYLYSAMEDYRIDILL 137
Query: 117 -------------DHALILGASTQDPNYSLSHAIRSRSFI-FELTPLNKSDLDRLCAKAL 162
+ ++GA+T+ L+ +R+R I L N L + +A
Sbjct: 138 DSGPASRAVQLKLEPFTLVGATTRAG--LLTSPLRARFGINSRLDYYNPELLQSIIIRAA 195
Query: 163 TLLKKQIEPGAKTYLLNNSAGDARALLNLLDLS---------AKIEDPITLKTLQSLRPH 213
+L I+ A + S G R LL + A I + +TL+SL
Sbjct: 196 GILNIGIDEDAAMEIARRSRGTPRIANRLLRRARDFAQVAGDASISLAVARRTLESL--- 252
Query: 214 SLNDGSYSDDTHYNLTSALIKSLRG 238
+++G DD + A+++ G
Sbjct: 253 EIDEGGL-DDMDKKILEAIVRKFNG 276
>ref|NP_473096.1| (NC_000910) replication factor C, 40 kDa subunit (replication
activator) [Plasmodium falciparum]
pir||H71604 replication factor C, 40 kDa subunit (replication activator)
PFB0840w - malaria parasite (Plasmodium falciparum)
gb|AAC71957.1| (AE001420) replication factor C, 40 kDa subunit (replication
activator) [Plasmodium falciparum 3D7]
Length = 330
Score = 54.3 bits (129), Expect = 2e-06
Identities = 62/249 (24%), Positives = 104/249 (40%), Gaps = 39/249 (15%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYML------- 61
PK L+D + Q + V L + +++K+ PH F+GPPG GKTS +A+ L
Sbjct: 12 PKRLDDIVHQNNAV---MMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFGKENIS 68
Query: 62 ERPILLFNATDFKLEDLRLKLKNYQNTLLK---------------PVVFIDETHRLNKTQ 106
ER + L + D + +R K+K Y + +V +DE + +
Sbjct: 69 ERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPSWKLVVLDEADMMTEDA 128
Query: 107 QEFLLPIMEKDHALILGASTQDPNYSLSHAIRSR--SFIFELTPLN--KSDLDRLCAKAL 162
Q L I+E + + + +S I SR + F+ P+N K L +C
Sbjct: 129 QSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIKKEKLLYICQNE- 187
Query: 163 TLLKKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIEDPITLKTLQSLRPHSLNDGSYSD 222
I A ++ + GD R +++L L + I ITL ++ + G SD
Sbjct: 188 ---NIDIVDDALEKIIETTEGDLRRAVSILQLCSCINTKITLNSVLDV------SGLPSD 238
Query: 223 DTHYNLTSA 231
+ Y + A
Sbjct: 239 NIVYKIIDA 247
>gb|AAG37987.1|AF071409_1 (AF071409) replication factor C subunit 2; RFC2 [Plasmodium
falciparum]
Length = 330
Score = 54.3 bits (129), Expect = 2e-06
Identities = 62/249 (24%), Positives = 104/249 (40%), Gaps = 39/249 (15%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYML------- 61
PK L+D + Q + V L + +++K+ PH F+GPPG GKTS +A+ L
Sbjct: 12 PKRLDDIVHQNNAV---MMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFGKENIS 68
Query: 62 ERPILLFNATDFKLEDLRLKLKNYQNTLLK---------------PVVFIDETHRLNKTQ 106
ER + L + D + +R K+K Y + +V +DE + +
Sbjct: 69 ERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPSWKLVVLDEADMMTEDA 128
Query: 107 QEFLLPIMEKDHALILGASTQDPNYSLSHAIRSR--SFIFELTPLN--KSDLDRLCAKAL 162
Q L I+E + + + +S I SR + F+ P+N K L +C
Sbjct: 129 QSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIKKEKLLYICQNE- 187
Query: 163 TLLKKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIEDPITLKTLQSLRPHSLNDGSYSD 222
I A ++ + GD R +++L L + I ITL ++ + G SD
Sbjct: 188 ---NIDIVDDALEKIIETTEGDLRRAVSILQLCSCINTKITLNSVLDV------SGLPSD 238
Query: 223 DTHYNLTSA 231
+ Y + A
Sbjct: 239 NIVYKIIDA 247
>ref|NP_325880.1| (NC_002771) DNA POLYMERASE III SUBUNIT GAMMA AND TAU [Mycoplasma
pulmonis]
emb|CAC13222.1| (AL445563) DNA POLYMERASE III SUBUNIT GAMMA AND TAU [Mycoplasma
pulmonis]
Length = 836
Score = 53.9 bits (128), Expect = 3e-06
Identities = 75/317 (23%), Positives = 134/317 (41%), Gaps = 45/317 (14%)
Query: 2 SLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAF-FYGPPGVGKTSLAQIIAYM 60
+L + P + ++ GQ+H+V A L + + H + F GP G GKTS+A+I A
Sbjct: 26 ALYRVYRPTTFDEVNGQDHIV---ATLKNIILTNKISHGYLFNGPRGTGKTSVAKIFATA 82
Query: 61 LE--------RP--------------ILLFNATDFKLEDLRLKLKNYQNTLLK---PVVF 95
L P I + A++ ++D+R + ++ LK +
Sbjct: 83 LNCIHKNDDFNPCQICIENSNKNIDIIEMDAASNNSVDDVRRLNEELKSLPLKGEYRIYI 142
Query: 96 IDETHRLNKTQQEFLLPIMEK--DHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSD 153
IDE H K+ LL +E+ H + + A+T+ ++ + + I SR F ++
Sbjct: 143 IDEVHMFTKSAFNALLKSLEEPPKHVIFIFATTE--SHKIPNTILSRVQRFNFRRISNDV 200
Query: 154 LDRLCAKALTLLKKQIEPGAKTYLLNNSAGDARALLNLLD-LSAKIEDPITLKTLQSLRP 212
+ A L K EP + Y+ + ++G R L++ D S + ITLK L +
Sbjct: 201 IIGHLANILEKEKINYEPKSLVYIASLASGSFRDALSIADQASIYGQGKITLKNLIT--- 257
Query: 213 HSLNDGSYSDDTHYNLTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASED 272
+ G S+++ NL + + +L + N L G +PE++ L+ +
Sbjct: 258 ---SFGISSNESVINLINNTVFNLYEAINN-----LDEFKKNGADPEYLLISLINIIKDF 309
Query: 273 IGNANPNALNLAASCLF 289
I N L+ A F
Sbjct: 310 IVFKKTNNLSFLALLSF 326
>ref|NP_371002.1| (NC_002758) DNA polymerase III gamma and tau subunits
[Staphylococcus aureus subsp. aureus Mu50]
ref|NP_373688.1| (NC_002745) DNA polymerase III gamma and tau subunits
[Staphylococcus aureus subsp. aureus N315]
dbj|BAB41666.1| (AP003130) DNA polymerase III gamma and tau subunits
[Staphylococcus aureus subsp. aureus N315]
dbj|BAB56640.1| (AP003359) DNA polymerase III gamma and tau subunits
[Staphylococcus aureus subsp. aureus Mu50]
Length = 565
Score = 53.9 bits (128), Expect = 3e-06
Identities = 72/310 (23%), Positives = 124/310 (39%), Gaps = 55/310 (17%)
Query: 2 SLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAF-FYGPPGVGKTSLAQIIAYM 60
+L + P+S ED +GQEH+ L A+ + HA+ F GP G GKTS+A++ A
Sbjct: 5 ALYRMYRPQSFEDVVGQEHVT---KTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFA-- 59
Query: 61 LERPILLFNATD--------------------------------FKLEDLRLKLKNYQNT 88
+ I N+TD ++ ++R K+K +
Sbjct: 60 --KAINCLNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSE 117
Query: 89 LLKPVVFIDETHRLNKTQQEFLLPIMEKD--HALILGASTQDPNYSLSHAIRSRSFIFEL 146
V IDE H L LL +E+ HA+ + A+T+ + + I SR+ F+
Sbjct: 118 SKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEP--HKIPPTIISRAQRFDF 175
Query: 147 TPLNKSDLDRLCAKALTLLKKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIEDPITLKT 206
++ + + + E A ++ S G R L+++D + D T
Sbjct: 176 KAISLDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTL--T 233
Query: 207 LQSLRPHSLN-DGSYSDDTHYNLTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRL 265
LQ +LN GS D+ +L +++ D AS + I G+ + +
Sbjct: 234 LQD----ALNVTGSVHDEALDHLFDDIVQ----GDVQASFKKYHQFITEGKEVNRLINDM 285
Query: 266 VIFASEDIGN 275
+ F + I N
Sbjct: 286 IYFVRDTIMN 295
>dbj|BAB16441.1| (AB045677) OsRFC 37 kDa subunit [Oryza sativa (japonica
cultivar-group)]
Length = 339
Score = 53.9 bits (128), Expect = 3e-06
Identities = 51/209 (24%), Positives = 84/209 (39%), Gaps = 22/209 (10%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP---- 64
P+ ++D QE +V L LQ+ PH FYGPPG GKT+ A IAY L P
Sbjct: 17 PRQVKDVAHQEEVV---RVLTTTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGPELYK 73
Query: 65 --ILLFNATDFK-LEDLRLKLKNYQNTLL------------KPVVFIDETHRLNKTQQEF 109
+L NA+D + + +R K+K++ + ++ +DE + + Q
Sbjct: 74 SRVLELNASDDRGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDAQNA 133
Query: 110 LLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQI 169
L ME + + + + SR F PL++ + +
Sbjct: 134 LRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEGLSL 193
Query: 170 EPGAKTYLLNNSAGDARALLNLLDLSAKI 198
+ A L S GD R + L +A++
Sbjct: 194 DAQALATLSTISNGDLRRAITYLQSAARL 222
>ref|NP_350296.1| (NC_003030) Lon-like ATP-dependent protease [Clostridium
acetobutylicum]
gb|AAK81636.1|AE007867_3 (AE007867) Lon-like ATP-dependent protease [Clostridium
acetobutylicum]
Length = 634
Score = 53.9 bits (128), Expect = 3e-06
Identities = 69/302 (22%), Positives = 109/302 (35%), Gaps = 95/302 (31%)
Query: 2 SLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYML 61
S+ SLL P++ + +GQE + L L S + H YGPPGVGKT+ A+I +
Sbjct: 162 SIQSLLRPQTFSEIVGQERAI---KALVSKLASPYPQHIILYGPPGVGKTTAARIALEEV 218
Query: 62 ERPILLFNATDFKLE---------DLRLKLKNYQNTLLKP-------------------- 92
++ T FK + LR + N LL
Sbjct: 219 KK----LKYTPFKKDANFVEVDGATLRWDPREITNPLLGSVHDPIYQGSKRDLAETGVPE 274
Query: 93 ------------VVFIDETHRLNKTQQEFLLPIMEKDHA--------------------- 119
V+FIDE L+ Q LL ++E
Sbjct: 275 PKSGLVTDAHGGVLFIDEIGELDVMLQNKLLKVLEDKKVEFSSSYYDPDDENVPKYIKYF 334
Query: 120 ---------LILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIE 170
+++GA+T+DP+ ++ A+RSR PL+ SD+ + A L +E
Sbjct: 335 FEKGAPADFVLIGATTKDPS-EINSALRSRCTEVYFEPLSSSDIMDIIDNAADKLNVLLE 393
Query: 171 PGAKTYLLNNSAGDARALLNLLD----------------LSAKIEDPITLKTLQSLRPHS 214
G K + + RA+ L D + K++D T+ + L P+
Sbjct: 394 DGVKELISRYTIQGRRAINILADVYGYVLYSQGLEPSDKVEIKVKDVETIVGISRLTPYE 453
Query: 215 LN 216
N
Sbjct: 454 KN 455
>ref|NP_456461.1| (NC_003198) Holliday junction DNA helicase [Salmonella enterica
subsp. enterica serovar Typhi]
ref|NP_460851.1| (NC_003197) Holliday junction helicase, subunit B [Salmonella
typhimurium LT2]
sp|Q8XF35|RUVB_SALTY Holliday junction DNA helicase ruvB
gb|AAL20810.1| (AE008784) Holliday junction helicase, subunit B [Salmonella
typhimurium LT2]
emb|CAD05645.1| (AL627272) Holliday junction DNA helicase [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 336
Score = 53.5 bits (127), Expect = 4e-06
Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 10/114 (8%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAYMLERP 64
+ PK L +++GQ + + +A + + H +GPPG+GKT+LA I+A E
Sbjct: 23 IRPKLLAEYVGQPQVRSQMEIFIQAAKRRGDALDHLLIFGPPGLGKTTLANIVAN--EMG 80
Query: 65 ILLFNATDFKLE---DLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115
+ L + LE DL L N + V+FIDE HRL+ +E L P ME
Sbjct: 81 VNLRTTSGPVLEKAGDLAAMLTNLEP---HDVLFIDEIHRLSPVVEEVLYPAME 131
>emb|CAC12618.1| (AL445067) probable replication factor C, 40 KD subunit
[Thermoplasma acidophilum]
Length = 330
Score = 53.1 bits (126), Expect = 5e-06
Identities = 55/205 (26%), Positives = 89/205 (42%), Gaps = 24/205 (11%)
Query: 4 TSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYML-- 61
T PKSL + G++ + K L ++ K PH F G G GKTS A +A L
Sbjct: 18 TEKYRPKSLSEIYGEDENIQK---LKSFVEKKEIPHLLFAGSVGTGKTSTAIALAIELFG 74
Query: 62 ----ERPILLFNATDFKLEDLRLKLKNY-----QNTLLKPVVFIDETHRLNKTQQEFLLP 112
E + + + + ++ +R K+K+ N L ++F+DE +L Q L
Sbjct: 75 DSWKENMVEMNASNENGIDVIRNKIKDIARIKPSNPLGFKILFLDEADQLTAEAQAALRR 134
Query: 113 IMEKDHALILGASTQ---DPNYS--LSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKK 167
ME I +T+ NYS + I+SR+ + P+ + R +
Sbjct: 135 TME-----IYSETTRFIFSCNYSSKIIPPIQSRTVVMRFRPVPDEYISRKLQEIAKNEGF 189
Query: 168 QIEPGAKTYLLNNSAGDARALLNLL 192
QI+ + L+ SAGD R +N+L
Sbjct: 190 QIDEESMHALVEVSAGDMRKAINVL 214
>ref|NP_177871.1| (NM_106396) putative replication factor C [Arabidopsis thaliana]
gb|AAG51681.1|AC010704_25 (AC010704) putative replication factor C; 24844-22715 [Arabidopsis
thaliana]
gb|AAL38893.1| (AY065452) putative replication factor C [Arabidopsis thaliana]
gb|AAM51357.1| (AY117282) putative replication factor C [Arabidopsis thaliana]
Length = 369
Score = 53.1 bits (126), Expect = 5e-06
Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 16/208 (7%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP---- 64
P+SL+D ++ + + PH YGPPG GKTS +A L P
Sbjct: 47 PQSLDDVAAHRDIIDT---IDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGPKYRN 103
Query: 65 -ILLFNATDFK-LEDLRLKLKNYQNT-------LLKPVVFIDETHRLNKTQQEFLLPIME 115
IL NA+D + ++ +R +++++ +T +V +DE + K Q L ++E
Sbjct: 104 MILELNASDDRGIDVVRQQIQDFASTQSFSLGKSSVKLVLLDEADAMTKDAQFALRRVIE 163
Query: 116 KDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIEPGAKT 175
K A + + A++SR F PL+ + + + + +
Sbjct: 164 KYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDGVHMSQRLKHVIEAERLVVSDCGLA 223
Query: 176 YLLNNSAGDARALLNLLDLSAKIEDPIT 203
L+ S GD R LN+L + IT
Sbjct: 224 ALVRLSNGDMRKALNILQSTHMASKEIT 251
>ref|NP_394950.1| (NC_002578) ATPase involved in DNA replication [Thermoplasma
acidophilum]
Length = 318
Score = 53.1 bits (126), Expect = 5e-06
Identities = 55/205 (26%), Positives = 89/205 (42%), Gaps = 24/205 (11%)
Query: 4 TSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYML-- 61
T PKSL + G++ + K L ++ K PH F G G GKTS A +A L
Sbjct: 6 TEKYRPKSLSEIYGEDENIQK---LKSFVEKKEIPHLLFAGSVGTGKTSTAIALAIELFG 62
Query: 62 ----ERPILLFNATDFKLEDLRLKLKNY-----QNTLLKPVVFIDETHRLNKTQQEFLLP 112
E + + + + ++ +R K+K+ N L ++F+DE +L Q L
Sbjct: 63 DSWKENMVEMNASNENGIDVIRNKIKDIARIKPSNPLGFKILFLDEADQLTAEAQAALRR 122
Query: 113 IMEKDHALILGASTQ---DPNYS--LSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKK 167
ME I +T+ NYS + I+SR+ + P+ + R +
Sbjct: 123 TME-----IYSETTRFIFSCNYSSKIIPPIQSRTVVMRFRPVPDEYISRKLQEIAKNEGF 177
Query: 168 QIEPGAKTYLLNNSAGDARALLNLL 192
QI+ + L+ SAGD R +N+L
Sbjct: 178 QIDEESMHALVEVSAGDMRKAINVL 202
>ref|NP_217108.1| (NC_000962) ruvB [Mycobacterium tuberculosis H37Rv]
ref|NP_337169.1| (NC_002755) Holliday junction DNA helicase RuvB [Mycobacterium
tuberculosis CDC1551]
sp|Q50629|RUVB_MYCTU Holliday junction DNA helicase ruvB
pir||G70726 DNA-binding protein ruvB - Mycobacterium tuberculosis (strain
H37RV)
emb|CAB01285.1| (Z77724) ruvB [Mycobacterium tuberculosis H37Rv]
gb|AAK46983.1| (AE007100) Holliday junction DNA helicase RuvB [Mycobacterium
tuberculosis CDC1551]
Length = 344
Score = 52.8 bits (125), Expect = 7e-06
Identities = 54/210 (25%), Positives = 93/210 (43%), Gaps = 29/210 (13%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKHFP--HAFFYGPPGVGKTSLAQIIAYMLERP 64
L P+SL +F+GQ + + + + +++ H GPPG+GKTSLA IIA L
Sbjct: 24 LRPRSLREFIGQPRVREQLQLVIEGAKNRGGTPDHILLSGPPGLGKTSLAMIIAAELGSS 83
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHA---- 119
+ + + + DL L N + V+FIDE HR+ + +E L ME
Sbjct: 84 LRVTSGPALERAGDLAAML---SNLVEHDVLFIDEIHRIARPAEEMLYLAMEDFRVDVVV 140
Query: 120 ----------------LILGASTQDPNYSLSHAIRSR-SFIFELTPLNKSDLDRLCAKAL 162
++GA+T+ + +L+ +R R F + ++L+R+ A++
Sbjct: 141 GKGPGATSIPLEVAPFTLVGATTR--SGALTGPLRDRFGFTAHMDFYEPAELERVLARSA 198
Query: 163 TLLKKQIEPGAKTYLLNNSAGDARALLNLL 192
+L ++ A + S G R LL
Sbjct: 199 GILGIELGADAGAEIARRSRGTPRIANRLL 228
>gb|AAK19840.1|AF331924_5 (AF038651) Holliday junction DNA-helicase RuvB [Corynebacterium
glutamicum]
Length = 363
Score = 52.4 bits (124), Expect = 9e-06
Identities = 36/112 (32%), Positives = 56/112 (49%), Gaps = 6/112 (5%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKHF--PHAFFYGPPGVGKTSLAQIIAYMLERP 64
L PKSL +F+GQ + + + + +++ H GPPG+GKT++A IIA L
Sbjct: 46 LRPKSLTEFIGQPKVRDQLSLVLTGAKNRGVVPDHVLLSGPPGLGKTTMAMIIAQELGTS 105
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115
+ + + + DL L N V+FIDE HR+ + +E L ME
Sbjct: 106 LRMTSGPALERAGDLAAMLSNLME---GDVLFIDEIHRIARPAEEMLYMAME 154
>ref|NP_600872.1| (NC_003450) COG2255:Holliday junction resolvasome helicase subunit
[Corynebacterium glutamicum]
Length = 363
Score = 52.4 bits (124), Expect = 9e-06
Identities = 36/112 (32%), Positives = 56/112 (49%), Gaps = 6/112 (5%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKHF--PHAFFYGPPGVGKTSLAQIIAYMLERP 64
L PKSL +F+GQ + + + + +++ H GPPG+GKT++A IIA L
Sbjct: 46 LRPKSLTEFIGQPKVRDQLSLVLTGAKNRGVVPDHVLLSGPPGLGKTTMAMIIAQELGTS 105
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115
+ + + + DL L N V+FIDE HR+ + +E L ME
Sbjct: 106 LRMTSGPALERAGDLAAMLSNLME---GDVLFIDEIHRIARPAEEMLYMAME 154
>dbj|BAB99053.1| (AP005279) Holliday junction resolvasome helicase subunit
[Corynebacterium glutamicum ATCC 13032]
Length = 360
Score = 52.4 bits (124), Expect = 9e-06
Identities = 36/112 (32%), Positives = 56/112 (49%), Gaps = 6/112 (5%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKHF--PHAFFYGPPGVGKTSLAQIIAYMLERP 64
L PKSL +F+GQ + + + + +++ H GPPG+GKT++A IIA L
Sbjct: 43 LRPKSLTEFIGQPKVRDQLSLVLTGAKNRGVVPDHVLLSGPPGLGKTTMAMIIAQELGTS 102
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115
+ + + + DL L N V+FIDE HR+ + +E L ME
Sbjct: 103 LRMTSGPALERAGDLAAMLSNLME---GDVLFIDEIHRIARPAEEMLYMAME 151
>ref|NP_472180.1| (NC_003212) highly similar to DNA polymerase III (gamma and tau
subunits) [Listeria innocua]
emb|CAC98078.1| (AL596173) highly similar to DNA polymerase III (gamma and tau
subunits) [Listeria innocua]
Length = 579
Score = 52.4 bits (124), Expect = 9e-06
Identities = 72/300 (24%), Positives = 120/300 (40%), Gaps = 49/300 (16%)
Query: 2 SLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAF-FYGPPGVGKTSLAQIIAY- 59
+L + P+S +D +GQEH+ L A+ HA+ F GP G GKTS A+I A
Sbjct: 5 ALYRVFRPQSFQDVVGQEHVT---KTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKA 61
Query: 60 ----------------------------MLERPILLFNATDFKLEDLRLKLKNYQNTLLK 91
+LE N + ++ D+R K+K
Sbjct: 62 INCEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVE-EIRDIREKVKYAPTVAKY 120
Query: 92 PVVFIDETHRLNKTQQEFLLPIMEK--DHALILGASTQDPNYSLSHAIRSRSFIFELTPL 149
V IDE H L+ LL +E+ H + + A+T+ + L I SR F+ +
Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEP--HKLPLTIISRVQRFDFKRI 178
Query: 150 NKSDLDRLCAKALTLLKKQIEPGAKTYLLNNSAGDARALLNLLD-LSAKIEDPITLKTLQ 208
D+ L K + A + + G R L+LLD + + + +T++
Sbjct: 179 TTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDAL 238
Query: 209 SLRPHSLNDGSYSDDTHYNLTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIF 268
+ GS + NL + L+ + D +I L L+A G++P + L++F
Sbjct: 239 EI------TGSVAQ----NLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVF 288
>gb|AAG37985.1|AF069296_1 (AF069296) replication factor C3 [Plasmodium falciparum]
Length = 344
Score = 52.4 bits (124), Expect = 9e-06
Identities = 58/224 (25%), Positives = 95/224 (41%), Gaps = 32/224 (14%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYML-----ER 63
P L D + E ++ + + + +Q PH +GPPG GKTS + L
Sbjct: 21 PNVLNDIISHEQVI---STIKRFVQKGELPHLLLHGPPGTGKTSTILAVCKELYGDKRSS 77
Query: 64 PILLFNATDFK-LEDLRLKLKNY----------QNTLLKPVVFIDETHRLNKTQQEFLLP 112
+L NA+D + + +R ++K + + T LK ++ +DE + Q +
Sbjct: 78 FVLELNASDDRGINVIRDQIKTFAESKNHYTTCEKTTLK-LIILDEADHMTYPAQNAMRR 136
Query: 113 IMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQ---I 169
IME + + ++ AI+SR F PL K + KAL + K + +
Sbjct: 137 IMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLKKEYMKN---KALDIAKSENVNL 193
Query: 170 EPGAKTYLLNNSAGDARALLNLL---DLSAK---IEDPITLKTL 207
G L+ GD R +LN L LS K I++ + L TL
Sbjct: 194 TEGGIDSLIRVGHGDMRRILNCLQVVSLSHKNLVIDENVILSTL 237
>sp|Q9AE09|RUVB_CORGL Holliday junction DNA helicase ruvB
Length = 343
Score = 52.4 bits (124), Expect = 9e-06
Identities = 36/112 (32%), Positives = 56/112 (49%), Gaps = 6/112 (5%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKHF--PHAFFYGPPGVGKTSLAQIIAYMLERP 64
L PKSL +F+GQ + + + + +++ H GPPG+GKT++A IIA L
Sbjct: 26 LRPKSLTEFIGQPKVRDQLSLVLTGAKNRGVVPDHVLLSGPPGLGKTTMAMIIAQELGTS 85
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115
+ + + + DL L N V+FIDE HR+ + +E L ME
Sbjct: 86 LRMTSGPALERAGDLAAMLSNLME---GDVLFIDEIHRIARPAEEMLYMAME 134
>ref|NP_301423.1| (NC_002677) Holliday junction helicase component [Mycobacterium
leprae]
sp|P40833|RUVB_MYCLE Holliday junction DNA helicase ruvB
emb|CAC29991.1| (AL583918) Holliday junction helicase component [Mycobacterium
leprae]
Length = 349
Score = 52.4 bits (124), Expect = 9e-06
Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKHFP--HAFFYGPPGVGKTSLAQIIAYMLERP 64
L P+SL +F+GQ + + + + +++ H GPPG+GKTSLA IIA L
Sbjct: 25 LRPRSLREFIGQPRVREQLQLVIEGAKNRGATPDHILLSGPPGLGKTSLAMIIAAELGSS 84
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115
+ + + + DL + L N + V+FIDE HR+ + +E L ME
Sbjct: 85 LRMTSGPALERAGDLAVML---SNLVEHDVLFIDEIHRIARPAEEMLYLAME 133
>ref|NP_466226.1| (NC_003210) highly similar to DNA polymerase III (gamma and tau
subunits) [Listeria monocytogenes EGD-e]
emb|CAD00917.1| (AL591984) highly similar to DNA polymerase III (gamma and tau
subunits) [Listeria monocytogenes]
Length = 579
Score = 52.4 bits (124), Expect = 9e-06
Identities = 72/300 (24%), Positives = 120/300 (40%), Gaps = 49/300 (16%)
Query: 2 SLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAF-FYGPPGVGKTSLAQIIAY- 59
+L + P+S +D +GQEH+ L A+ HA+ F GP G GKTS A+I A
Sbjct: 5 ALYRVFRPQSFQDVVGQEHVT---KTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKA 61
Query: 60 ----------------------------MLERPILLFNATDFKLEDLRLKLKNYQNTLLK 91
+LE N + ++ D+R K+K
Sbjct: 62 INCEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVE-EIRDIREKVKYAPTVAKY 120
Query: 92 PVVFIDETHRLNKTQQEFLLPIMEK--DHALILGASTQDPNYSLSHAIRSRSFIFELTPL 149
V IDE H L+ LL +E+ H + + A+T+ + L I SR F+ +
Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEP--HKLPLTIISRVQRFDFKRI 178
Query: 150 NKSDLDRLCAKALTLLKKQIEPGAKTYLLNNSAGDARALLNLLD-LSAKIEDPITLKTLQ 208
D+ L K + A + + G R L+LLD + + + +T++
Sbjct: 179 TTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDAL 238
Query: 209 SLRPHSLNDGSYSDDTHYNLTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIF 268
+ GS + NL + L+ + D +I L L+A G++P + L++F
Sbjct: 239 EI------TGSVAQ----NLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVF 288
>dbj|BAB16439.1| (AB038319) replication factor C 36kDa subunit [Oryza sativa
(japonica cultivar-group)]
Length = 367
Score = 52.0 bits (123), Expect = 1e-05
Identities = 51/209 (24%), Positives = 85/209 (40%), Gaps = 17/209 (8%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYML-----ER 63
P+SL D +V + + PH YGPPG GKTS +A L
Sbjct: 46 PQSLGDVAAHRDIVDT---IDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGSQYGN 102
Query: 64 PILLFNATDFK-LEDLRLKLKNYQNT--------LLKPVVFIDETHRLNKTQQEFLLPIM 114
IL NA+D + ++ +R +++++ + +V +DE + K Q L ++
Sbjct: 103 MILELNASDERGIDVVRQQIQDFASARSLSFGAKQSVKMVLLDEADAMTKDAQFALRRVI 162
Query: 115 EKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIEPGAK 174
EK A + + A++SR F PL+ + + + ++ G
Sbjct: 163 EKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGTHVRERLKHIIQSEGLDVDDGGL 222
Query: 175 TYLLNNSAGDARALLNLLDLSAKIEDPIT 203
T L+ S GD R LN+L + IT
Sbjct: 223 TALVRLSNGDMRKALNILQSTHMASKQIT 251
>ref|NP_563551.1| (NC_003366) probable ATP-dependent proteinase La [Clostridium
perfringens]
dbj|BAB82341.1| (AP003194) probable ATP-dependent proteinase La [Clostridium
perfringens]
Length = 619
Score = 52.0 bits (123), Expect = 1e-05
Identities = 61/263 (23%), Positives = 100/263 (37%), Gaps = 79/263 (30%)
Query: 2 SLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYML 61
++ SLL P S ++ +GQE V L L S + H YGPPGVGKT+ A+I
Sbjct: 148 NIMSLLRPDSFDEVVGQERAVKS---LLSKLASPYPQHIILYGPPGVGKTTAARIALETA 204
Query: 62 ERPILLFNATDFKLED---------LRLKLKNYQNTLL---------------------- 90
++ +T F LR + N LL
Sbjct: 205 KK----LKSTPFDDRSKFIEVNGTTLRWDPREITNPLLGSVHDPIYQGSKRDLAEIGVPE 260
Query: 91 -KP---------VVFIDETHRLNKTQQEFLLPIMEKDHA--------------------- 119
KP ++FIDE L++ Q LL ++E
Sbjct: 261 PKPGLVTEAHGGILFIDEIGELDEILQNKLLKVLEDKRVEFSSSYYDPDDENTPKYIKYL 320
Query: 120 ---------LILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIE 170
+++GA+T++P ++ A+RSR PL+ D++++ A L ++E
Sbjct: 321 FDKGAPADFVLIGATTREPG-EINPALRSRCTEVYFEPLSSRDIEKIVLNAAKKLNVKLE 379
Query: 171 PGAKTYLLNNSAGDARALLNLLD 193
G + + + + RA+ L D
Sbjct: 380 EGLEKKIASYTIEGRRAVNILAD 402
>ref|NP_110225.1| (NC_000912) Holliday junction DNA helicase RuvB [Mycoplasma
pneumoniae]
sp|P75242|RUVB_MYCPN Holliday junction DNA helicase ruvB
pir||S73632 Holliday junction DNA helicase ruvB - Mycoplasma pneumoniae
(strain ATCC 29342)
gb|AAB95954.1| (AE000028) Holliday junction DNA helicase RuvB [Mycoplasma
pneumoniae]
Length = 307
Score = 51.6 bits (122), Expect = 2e-05
Identities = 31/120 (25%), Positives = 60/120 (49%), Gaps = 12/120 (10%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKA--LQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERPIL 66
P + +F+G++ ++ + KA + H YGPPGVGKT+LA++IA + +
Sbjct: 8 PNNFAEFVGKQEIINQIQLSIKASRINKAQLDHILLYGPPGVGKTTLARLIASEMNTKLQ 67
Query: 67 LFNATDFKLEDLRLKLKNYQN--TLLK--PVVFIDETHRLNKTQQEFLLPIMEKDHALIL 122
+ + + ++ N +L+K V+F+DE H + + E + P+M+ +L
Sbjct: 68 IIQGGHLQ------RPSDFLNAVSLIKKGDVLFVDEIHAVAPSVMELMFPVMDDFRVQVL 121
>ref|NP_218601.1| (NC_000919) Holliday junction DNA helicase (ruvB) [Treponema
pallidum]
sp|P96115|RUVB_TREPA Holliday junction DNA helicase ruvB
pir||H71359 DNA-binding protein TP0162 - syphilis spirochete
gb|AAC65150.1| (AE001200) Holliday junction DNA helicase (ruvB) [Treponema
pallidum]
Length = 350
Score = 51.2 bits (121), Expect = 2e-05
Identities = 42/113 (37%), Positives = 55/113 (48%), Gaps = 8/113 (7%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAYML--E 62
L P+ L+DFLGQE +A + ++ H F GPPG+GKT+LA I A L E
Sbjct: 24 LRPRLLKDFLGQEKTKRNLRLFIQAARDRNESLDHLFLIGPPGLGKTTLAHITACELGVE 83
Query: 63 RPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115
+ A D K +DL L + V F+DE HRL +E L ME
Sbjct: 84 CKVTGAPALD-KPKDLAGILTALSE---RSVFFVDEIHRLKPAIEEMLYIAME 132
>ref|NP_564148.1| (NM_102018) putative replication factor [Arabidopsis thaliana]
gb|AAL07059.1| (AY056210) putative replication factor [Arabidopsis thaliana]
gb|AAL32715.1| (AY062637) Similar replication factor C, 37-kDa subunit
[Arabidopsis thaliana]
gb|AAM61276.1| (AY084702) putative replication factor [Arabidopsis thaliana]
Length = 339
Score = 51.2 bits (121), Expect = 2e-05
Identities = 50/210 (23%), Positives = 85/210 (39%), Gaps = 23/210 (10%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP---- 64
PK ++D QE +V L LQ+ PH FYGPPG GKT+ A IA+ L P
Sbjct: 17 PKQVKDVAHQEEVV---RVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGPELYK 73
Query: 65 --ILLFNATDFK-LEDLRLKLKNYQNTLLK-------------PVVFIDETHRLNKTQQE 108
+L NA+D + + +R K+K++ + ++ +DE + + Q
Sbjct: 74 SRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTEDAQN 133
Query: 109 FLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQ 168
L ME + + + + SR F PL++ +
Sbjct: 134 ALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEGLS 193
Query: 169 IEPGAKTYLLNNSAGDARALLNLLDLSAKI 198
++ A + L + S GD R + L + ++
Sbjct: 194 LDGEALSTLSSISQGDLRRAITYLQSATRL 223
>ref|NP_573245.1| (NM_133017) CG8142 gene product [Drosophila melanogaster]
gb|AAL39743.1| (AY069598) LD35209p [Drosophila melanogaster]
Length = 353
Score = 50.8 bits (120), Expect = 3e-05
Identities = 51/211 (24%), Positives = 87/211 (41%), Gaps = 21/211 (9%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSL-----AQIIAYMLER 63
P++++D + Q +V A L K ++ P+ YGPPG GKTS QI M +
Sbjct: 38 PRNVDDVVEQSEVV---AVLRKCVEGGDLPNMLLYGPPGTGKTSTILAASRQIFGDMFKD 94
Query: 64 PILLFNATDFK-LEDLRLKLKNYQN---TLLKP---------VVFIDETHRLNKTQQEFL 110
IL NA+D + + +R K+KN+ + ++P ++ +DE + Q L
Sbjct: 95 RILELNASDERGINVVRTKIKNFSQLSASSVRPDGKPCPPFKIIILDEADSMTHAAQSAL 154
Query: 111 LPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIE 170
MEK+ + + I SR F L + + + +IE
Sbjct: 155 RRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGEDKVIDRLKYICEMEGVKIE 214
Query: 171 PGAKTYLLNNSAGDARALLNLLDLSAKIEDP 201
A ++ S GD R + L +++ P
Sbjct: 215 DDAYKSIVKISGGDLRRAITTLQSCYRLKGP 245
>ref|NP_584556.1| (NC_003229) DNA REPLICATION FACTOR C (ACTIVATOR 1) SUBUNIT
[Encephalitozoon cuniculi]
emb|CAD25060.1| (AL590442) DNA REPLICATION FACTOR C (ACTIVATOR 1) SUBUNIT
[Encephalitozoon cuniculi]
Length = 305
Score = 50.4 bits (119), Expect = 3e-05
Identities = 57/222 (25%), Positives = 96/222 (42%), Gaps = 16/222 (7%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLE 62
LT P SL + +G +V L + P+ FYGPPG GKT+ + IA L
Sbjct: 5 LTEKYRPGSLLEVVGNREVVSS---LQSISSAGRIPNMLFYGPPGTGKTTSIRAIANNLP 61
Query: 63 R-PILLFNATDFK-LEDLRLKLKNYQNTLLK--PVVFIDETHRLNKTQQEFLLPIMEKDH 118
R +L NA+D + + +R +K + +T K +V +DE +++ Q L I+E
Sbjct: 62 RTSVLELNASDERGIATVRETIKEFASTYSKTMKLVILDEADMMSRDAQNALRRIIEDFS 121
Query: 119 ALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSD--LDRLCAKALTLLKKQIEPGAKTY 176
A + + I SR F P+ ++ ++ +C + K G K
Sbjct: 122 ANTRFCLIANHLRKIISPILSRCTKFRFGPIGDTENRIEEICKRESI---KYTPEGIKA- 177
Query: 177 LLNNSAGDARALLN-LLDLSAKI--EDPITLKTLQSLRPHSL 215
+ S GD R +N + +SA + D ++ + P S+
Sbjct: 178 VSRISMGDMRKAVNDIQGISASLGQVDESNVRRFNGIAPSSV 219
>gb|AAD41422.1|AC007727_11 (AC007727) Similar to gb|M87339 replication factor C, 37-kDa
subunit from Homo sapiens and is a member of PF|00004
ATPases associated with various cellular activities.
[Arabidopsis thaliana]
Length = 319
Score = 50.4 bits (119), Expect = 3e-05
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP---- 64
PK ++D QE +V L LQ+ PH FYGPPG GKT+ A IA+ L P
Sbjct: 17 PKQVKDVAHQEEVV---RVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGPELYK 73
Query: 65 --ILLFNATDFK-LEDLRLKLKNY 85
+L NA+D + + +R K+K++
Sbjct: 74 SRVLELNASDDRGINVVRTKIKDF 97
>ref|NP_031396.1| (NM_007370) replication factor C (activator 1) 5 (36.5kD) [Homo
sapiens]
sp|P40937|AC11_HUMAN Activator 1 36 kDa subunit (Replication factor C 36 kDa subunit)
(A1 36 kDa subunit) (RF-C 36 kDa subunit) (RFC36)
gb|AAB09784.1| (L07540) replication factor C, 36-kDa subunit [Homo sapiens]
gb|AAH01866.1|AAH01866 (BC001866) replication factor C (activator 1) 5 (36.5kD) [Homo
sapiens]
gb|AAH13961.1|AAH13961 (BC013961) Similar to replication factor C (activator 1) 5 (36.5kD)
[Homo sapiens]
Length = 340
Score = 50.4 bits (119), Expect = 3e-05
Identities = 51/219 (23%), Positives = 92/219 (41%), Gaps = 15/219 (6%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP---- 64
P++L D + + ++ + + K + PH YGPPG GKTS A L +
Sbjct: 28 PQTLNDLISHQDIL---STIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFG 84
Query: 65 --ILLFNATDFK-LEDLRLKLKNYQN--TLLK---PVVFIDETHRLNKTQQEFLLPIMEK 116
+L NA+D + ++ +R + ++ + T+ K +V +DE + + Q L ++EK
Sbjct: 85 SMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEK 144
Query: 117 DHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIEPGAKTY 176
+ + A++SR F PL + + K I
Sbjct: 145 FTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKA 204
Query: 177 LLNNSAGDARALLNLLDLSAKIEDPITLKTLQSLRPHSL 215
L+ S+GD R LN+L + +T +T+ + H L
Sbjct: 205 LVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPL 243
>ref|NP_613293.1| (NC_003551) Replication factor C (ATPase involved in DNA
replication) intein containing [Methanopyrus kandleri
AV19]
gb|AAM01223.1| (AE010302) Replication factor C (ATPase involved in DNA
replication) intein containing [Methanopyrus kandleri
AV19]
Length = 635
Score = 50.1 bits (118), Expect = 5e-05
Identities = 45/171 (26%), Positives = 80/171 (46%), Gaps = 21/171 (12%)
Query: 62 ERPILLFNATDFKLEDLRLKLKNYQNTLLKP-------VVFIDETHRLNKTQQEFLLPIM 114
E P+LL N+ + ++ +R K+KN+ T +P ++F+DE L + Q+ L IM
Sbjct: 380 EVPVLLHNSDERGIDVIRTKVKNFART--RPMGGARFKIIFLDEADNLTRDSQQALRRIM 437
Query: 115 E--KDHALILGASTQDPNYS--LSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIE 170
E D + A+ NYS + I+SR +F+ T L +S + K +I
Sbjct: 438 EMYSDACRFILAA----NYSSAIIDPIQSRCVVFKFTKLPESAIKERLRKIAESEGVEIT 493
Query: 171 PGAKTYLLNNSAGDARALLNLLDLSA----KIEDPITLKTLQSLRPHSLND 217
A ++ S GD R +N+L +A +I++ + + RP + +
Sbjct: 494 EDALDAIVYVSEGDMRRAINVLQAAAALGREIDEDTVFQIAATARPEEVRE 544
>ref|NP_498521.1| (NM_066120) Replication factor C [Caenorhabditis elegans]
sp|P53016|AC12_CAEEL PUTATIVE ACTIVATOR 1 37 KD SUBUNIT (REPLICATION FACTOR C 37 KD
SUBUNIT) (A1 37 KD SUBUNIT) (RF-C 37 KD SUBUNIT) (RFC37)
pir||T16219 hypothetical protein F31E3.3 - Caenorhabditis elegans
gb|AAA81689.1| (U40935) C. elegans RFC-4 protein (corresponding sequence F31E3.3)
[Caenorhabditis elegans]
Length = 334
Score = 49.7 bits (117), Expect = 6e-05
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 20/132 (15%)
Query: 1 MSLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYM 60
++ T PK+L+D Q+ +V L ALQ + PH FYGPPG GKTS A
Sbjct: 15 LTWTEKYRPKTLDDIAYQDEVV---TMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCRQ 71
Query: 61 L------ERPILLFNATDFK-LEDLRLKLKNY----------QNTLLKPVVFIDETHRLN 103
L +L NA+D + + +R K++++ ++ L ++ +DE +
Sbjct: 72 LFPKNIFHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVLKLKIIILDEVDAMT 131
Query: 104 KTQQEFLLPIME 115
+ Q + ++E
Sbjct: 132 REAQAAMRRVIE 143
>gb|EAA08477.1| (AAAB01008879) agCP2869 [Anopheles gambiae str. PEST]
Length = 373
Score = 49.7 bits (117), Expect = 6e-05
Identities = 52/202 (25%), Positives = 82/202 (39%), Gaps = 21/202 (10%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTS-----LAQIIAYMLER 63
PKS++D + Q +V A L ++L + P+ YGPPG GKTS Q+ M +
Sbjct: 56 PKSVDDVVEQAEVV---AVLRESLSTTDLPNLLLYGPPGTGKTSTILAAARQLFGDMFKE 112
Query: 64 PILLFNATDFK-LEDLRLKLKNY-------QNTLLKP-----VVFIDETHRLNKTQQEFL 110
IL NA+D + + +R K+K + T KP +V +DE + Q L
Sbjct: 113 RILELNASDDRGIAVIRNKVKTFAQLTASGTRTDGKPCPPFKIVILDEADAMTHAAQAAL 172
Query: 111 LPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIE 170
MEK+ + + I SR F PL + + ++
Sbjct: 173 RRTMEKETKTTRFCLVCNYVSRIIEPITSRCTKFRFKPLGEEKIIERLRYICDQEGVTVD 232
Query: 171 PGAKTYLLNNSAGDARALLNLL 192
G +++ S GD R + L
Sbjct: 233 DGVYKDIVDISGGDLRRAITTL 254
>ref|NP_615630.1| (NC_003552) replication factor C, small subunit [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM04110.1| (AE010728) replication factor C, small subunit [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 338
Score = 49.3 bits (116), Expect = 8e-05
Identities = 50/203 (24%), Positives = 84/203 (40%), Gaps = 15/203 (7%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAY------MLE 62
P L GQ+ + + L + +K+ PH F GPPGVGKT+ A IA +
Sbjct: 21 PVRLNQVAGQDETIER---LKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGEDLWR 77
Query: 63 RPILLFNATDFK-LEDLRLKLKNYQNT-----LLKPVVFIDETHRLNKTQQEFLLPIMEK 116
NA+D + ++ +R K+KN+ T ++F+DE L Q L ME+
Sbjct: 78 ENFTELNASDERGIDIVRNKIKNFAKTAPIGGAPFKIIFLDEADALTADAQSALRRTMER 137
Query: 117 DHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIEPGAKTY 176
+ + + + + I+SR ++ L+ + I G
Sbjct: 138 FSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDEAIKERLEYIAGDQGLSITEGGYEA 197
Query: 177 LLNNSAGDARALLNLLDLSAKIE 199
L+ + GD R +N L +A I+
Sbjct: 198 LIYVAQGDMRKAVNSLQAAAFID 220
>dbj|BAB60660.1| (AP000996) replication factor C subunit [Thermoplasma volcanium]
Length = 330
Score = 49.3 bits (116), Expect = 8e-05
Identities = 56/231 (24%), Positives = 93/231 (40%), Gaps = 25/231 (10%)
Query: 4 TSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYML-- 61
T PKSL + G++ + K L ++ K PH F G G GKTS A +A L
Sbjct: 18 TEKYRPKSLSEIYGEDENIQK---LKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELFG 74
Query: 62 ----ERPILLFNATDFKLEDLRLKLKNY-----QNTLLKPVVFIDETHRLNKTQQEFLLP 112
E I + + + ++ +R K+K+ N L ++F+DE +L Q L
Sbjct: 75 ESWKENFIEMNASNENGIDVIRNKIKDIARIRPSNPLGFKILFLDEADQLTAEAQAALRR 134
Query: 113 IMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQ---- 168
ME + + + I+SR+ + P+ D K L + K
Sbjct: 135 TMEMYSETTRFVFACNYSSKIIPPIQSRTVVMRFRPVQ----DEFIKKKLNEIAKNEGFT 190
Query: 169 IEPGAKTYLLNNSAGDARALLNLLD---LSAKIEDPITLKTLQSLRPHSLN 216
I+ + ++ S GD R +N+L S +I + + P S+N
Sbjct: 191 IDDESMEAMVEVSGGDMRKAINVLQAVYTSGEISPKKIYEIIGYASPESVN 241
>ref|NP_112010.1| (NC_002689) ATPase involved in DNA replication [Thermoplasma
volcanium]
Length = 318
Score = 49.3 bits (116), Expect = 8e-05
Identities = 56/231 (24%), Positives = 93/231 (40%), Gaps = 25/231 (10%)
Query: 4 TSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYML-- 61
T PKSL + G++ + K L ++ K PH F G G GKTS A +A L
Sbjct: 6 TEKYRPKSLSEIYGEDENIQK---LKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELFG 62
Query: 62 ----ERPILLFNATDFKLEDLRLKLKNY-----QNTLLKPVVFIDETHRLNKTQQEFLLP 112
E I + + + ++ +R K+K+ N L ++F+DE +L Q L
Sbjct: 63 ESWKENFIEMNASNENGIDVIRNKIKDIARIRPSNPLGFKILFLDEADQLTAEAQAALRR 122
Query: 113 IMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQ---- 168
ME + + + I+SR+ + P+ D K L + K
Sbjct: 123 TMEMYSETTRFVFACNYSSKIIPPIQSRTVVMRFRPVQ----DEFIKKKLNEIAKNEGFT 178
Query: 169 IEPGAKTYLLNNSAGDARALLNLLD---LSAKIEDPITLKTLQSLRPHSLN 216
I+ + ++ S GD R +N+L S +I + + P S+N
Sbjct: 179 IDDESMEAMVEVSGGDMRKAINVLQAVYTSGEISPKKIYEIIGYASPESVN 229
>ref|NP_523915.1| (NM_079191) Replication-factor-C 40kD subunit [Drosophila
melanogaster]
sp|P53034|AC14_DROME Activator 1 40 kDa subunit (Replication factor C 40 kDa subunit)
(A1 40 kDa subunit) (RF-C 40 kDa subunit) (RFC40)
pir||S55020 replication factor C 40K chain homolog - fruit fly (Drosophila
melanogaster)
gb|AAB60241.1| (U15967) rfc40 [Drosophila melanogaster]
gb|AAF47843.1| (AE003480) RfC40 gene product [Drosophila melanogaster]
gb|AAM11182.1| (AY094829) LD40483p [Drosophila melanogaster]
Length = 331
Score = 48.5 bits (114), Expect = 1e-04
Identities = 65/269 (24%), Positives = 116/269 (42%), Gaps = 33/269 (12%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYML-----ER 63
P ++ +G E V + L + P+ GPPGVGKT+ Q +A +L +
Sbjct: 24 PVKFKEIVGNEDTVAR---LSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDSYKE 80
Query: 64 PILLFNATDFK-LEDLRLKLKNY-QNTLLKP-----VVFIDETHRLNKTQQEFLLPIMEK 116
+L NA++ + ++ +R K+K + Q + P +V +DE + + Q+ L ME
Sbjct: 81 AVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALRRTMEI 140
Query: 117 DHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLK----KQIEPG 172
+ A + + + I+SR + T L+ + ++ AK + + K E G
Sbjct: 141 YSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDA---QVLAKLIEVAKWEKLNYTEDG 197
Query: 173 AKTYLLNNSAGDARALLNLLDLSAKIEDPITLKTLQSLRPHSLNDGSYSDDTHYNLTSAL 232
+ ++ + GD R LN L +A+ IT + N D+ H L +
Sbjct: 198 LEA-IVFTAQGDMRQGLNNLQSTAQGFGDITAE----------NVFKVCDEPHPKLLEEM 246
Query: 233 IKSLRGSDENASIYYLARLIAGGENPEFI 261
I +D + + LA+L G +PE I
Sbjct: 247 IHHCAANDIHKAYKILAKLWKLGYSPEDI 275
>pir||S72734 DNA-binding protein ruvB - Mycobacterium leprae
gb|AAA17098.1| (U00011) ruvB; holliday junction DNA helicase ruvB; B1177_C3_227
[Mycobacterium leprae]
Length = 369
Score = 48.1 bits (113), Expect = 2e-04
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 10 KSLEDFLGQEHLVGKDAPLFKALQSKHFP--HAFFYGPPGVGKTSLAQIIAYMLERPILL 67
+SL +F+GQ + + + + +++ H GPPG+GKTSLA IIA L + +
Sbjct: 48 RSLREFIGQPRVREQLQLVIEGAKNRGATPDHILLSGPPGLGKTSLAMIIAAELGSSLRM 107
Query: 68 FNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115
+ + DL + L N + V+FIDE HR+ + +E L ME
Sbjct: 108 TSGPALERAGDLAVML---SNLVEHDVLFIDEIHRIARPAEEMLYLAME 153
>ref|NP_218238.1| (NC_000962) dnaZX [Mycobacterium tuberculosis H37Rv]
ref|NP_338379.1| (NC_002755) DNA polymerase III, gamma and tau subunits
[Mycobacterium tuberculosis CDC1551]
sp|O69688|DP3X_MYCTU DNA polymerase III subunit gamma/tau
pir||B70796 probable DNA POLYMERASE III SUBUNITS GAMMA - Mycobacterium
tuberculosis (strain H37RV)
emb|CAA18043.1| (AL022121) dnaZX [Mycobacterium tuberculosis H37Rv]
gb|AAK48193.1| (AE007178) DNA polymerase III, gamma and tau subunits
[Mycobacterium tuberculosis CDC1551]
Length = 578
Score = 48.1 bits (113), Expect = 2e-04
Identities = 73/303 (24%), Positives = 122/303 (40%), Gaps = 54/303 (17%)
Query: 1 MSLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAF-FYGPPGVGKTSLAQIIAY 59
M+L P S + +GQEH+ APL AL + HA+ F GP G GKTS A+I+A
Sbjct: 1 MALYRKYRPASFAEVVGQEHVT---APLSVALDAGRINHAYLFSGPRGCGKTSSARILAR 57
Query: 60 ML--------------ERPILLFNATDFKLEDLRLKLKNY----------QNTLLKPV-- 93
L E + L ++ + L ++ PV
Sbjct: 58 SLNCAQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQS 117
Query: 94 ---VFI-DETHRLNKTQQEFLLPIMEK--DHALILGASTQDPNYSLSHAIRSRSFIFELT 147
VFI DE H + LL I+E+ +H + + A+T+ + R+ + F L
Sbjct: 118 RYRVFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLL 177
Query: 148 P--LNKSDLDRLCAKALTLLKKQIEPGAKTYLLNNSAGDARALLNLLD--LSAKIEDPIT 203
P ++ L R+C + ++ + P ++ G R L++LD L+ + +T
Sbjct: 178 PPRTMRALLARICEQEGVVVDDAVYP----LVIRAGGGSPRDTLSVLDQLLAGAADTHVT 233
Query: 204 LKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSDENASIYYLARLIAGGENPEFIAR 263
++L + D + DD + +L D A + +I GG +P A
Sbjct: 234 Y--TRALGLLGVTDVALIDDA--------VDALAACDAAALFGAIESVIDGGHDPRRFAT 283
Query: 264 RLV 266
L+
Sbjct: 284 DLL 286
>ref|NP_606369.1| (NC_003485) putative Holliday junction DNA helicase, subunit B
[Streptococcus pyogenes MGAS8232]
gb|AAL96868.1| (AE009957) putative Holliday junction DNA helicase, subunit B
[Streptococcus pyogenes MGAS8232]
Length = 354
Score = 47.8 bits (112), Expect = 2e-04
Identities = 54/212 (25%), Positives = 93/212 (43%), Gaps = 33/212 (15%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAYMLERP 64
L P+ L +++GQ+ + + A +A + + H +GPPG+GKT++A +IA L
Sbjct: 42 LRPQYLHEYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPGLGKTTMAFVIANELGVN 101
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKP--VVFIDETHRLNKTQQEFLLPIMEKDHA-- 119
+ + K DL L L+P ++FIDE HR+ + +E L ME +
Sbjct: 102 LKQTSGPAVEKAGDLVAILNE-----LEPGDILFIDEIHRMPMSVEEVLYSAMEDFYIDI 156
Query: 120 ------------------LILGASTQDPNYSLSHAIRSRSFIF-ELTPLNKSDLDRLCAK 160
++GA+T+ LS+ +R+R I + + DL + +
Sbjct: 157 MIGAGDTSRSIHLDLPPFTLIGATTRAG--MLSNPLRARFGITGHMEYYQEKDLTEIVER 214
Query: 161 ALTLLKKQIEPGAKTYLLNNSAGDARALLNLL 192
T+ + +I+ A L S G R LL
Sbjct: 215 TATIFEIKIDHEAARKLACRSRGTPRIANRLL 246
>ref|XP_132348.1| (XM_132348) similar to data source:SPTR, source key:P40937,
evidence:ISS~homolog to ACTIVATOR 1 36 KDA SUBUNIT
(REPLICATION FACTOR C 36 KDA SUBUNIT) (A1 36 KDA
SUBUNIT) (RF-C 36 KDA SUBUNIT) (RFC36)~putative [Mus
musculus]
dbj|BAB27652.1| (AK011489) data source:SPTR, source key:P40937,
evidence:ISS~homolog to ACTIVATOR 1 36 KDA SUBUNIT
(REPLICATION FACTOR C 36 KDA SUBUNIT) (A1 36 KDA
SUBUNIT) (RF-C 36 KDA SUBUNIT) (RFC36)~putative [Mus
musculus]
Length = 339
Score = 47.8 bits (112), Expect = 2e-04
Identities = 50/219 (22%), Positives = 91/219 (40%), Gaps = 15/219 (6%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP---- 64
P++L D + + ++ + + K + PH YGPPG GKTS A L +
Sbjct: 27 PQTLADLISHQDIL---STIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFG 83
Query: 65 --ILLFNATDFK-LEDLRLKLKNYQN--TLLK---PVVFIDETHRLNKTQQEFLLPIMEK 116
+L NA+D + ++ +R + ++ + T+ K +V +DE + + Q L ++EK
Sbjct: 84 SMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEK 143
Query: 117 DHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIEPGAKTY 176
+ + A++SR F PL + + I
Sbjct: 144 FTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDGMKA 203
Query: 177 LLNNSAGDARALLNLLDLSAKIEDPITLKTLQSLRPHSL 215
L+ S+GD R LN+L + +T +T+ + H L
Sbjct: 204 LVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPL 242
>ref|NP_268453.1| (NC_002737) putative Holliday junction DNA helicase, subunit B
[Streptococcus pyogenes] [Streptococcus pyogenes M1 GAS]
sp|Q9A1Y1|RUVB_STRPY Holliday junction DNA helicase ruvB
gb|AAK33175.1| (AE006476) putative Holliday junction DNA helicase, subunit B
[Streptococcus pyogenes M1 GAS]
Length = 332
Score = 47.8 bits (112), Expect = 2e-04
Identities = 54/212 (25%), Positives = 93/212 (43%), Gaps = 33/212 (15%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAYMLERP 64
L P+ L +++GQ+ + + A +A + + H +GPPG+GKT++A +IA L
Sbjct: 20 LRPQYLHEYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPGLGKTTMAFVIANELGVN 79
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKP--VVFIDETHRLNKTQQEFLLPIMEKDHA-- 119
+ + K DL L L+P ++FIDE HR+ + +E L ME +
Sbjct: 80 LKQTSGPAVEKAGDLVAILNE-----LEPGDILFIDEIHRMPMSVEEVLYSAMEDFYIDI 134
Query: 120 ------------------LILGASTQDPNYSLSHAIRSRSFIF-ELTPLNKSDLDRLCAK 160
++GA+T+ LS+ +R+R I + + DL + +
Sbjct: 135 MIGAGDTSRSIHLDLPPFTLIGATTRAG--MLSNPLRARFGITGHMEYYQEKDLTEIVER 192
Query: 161 ALTLLKKQIEPGAKTYLLNNSAGDARALLNLL 192
T+ + +I+ A L S G R LL
Sbjct: 193 TATIFEIKIDHEAARKLACRSRGTPRIANRLL 224
>ref|NP_275383.1| (NC_000916) replication factor C, large subunit
[Methanothermobacter thermautotrophicus]
[Methanothermobacter thermautotrophicus str. Delta H]
pir||A69130 replication factor C, large subunit - Methanobacterium
thermoautotrophicum (strain Delta H)
gb|AAB84746.1| (AE000811) replication factor C, large subunit [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 479
Score = 47.8 bits (112), Expect = 2e-04
Identities = 52/215 (24%), Positives = 92/215 (42%), Gaps = 17/215 (7%)
Query: 1 MSLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQS-KHFPHAFFYGPPGVGKTSLAQIIAY 59
MS T P S ++ +G + ++ + KA ++ K GPPG GKT+LA II
Sbjct: 1 MSWTEKYRPGSFDEVVGNQKVIAEIKEWIKAWKAGKPQKPLLLVGPPGTGKTTLAHIIGK 60
Query: 60 MLERPILLFNATDFKLEDLRLK-------LKNYQNTLLKPVVFIDETHRLNKTQ-----Q 107
+ L NA+D + +D ++ ++ N LK ++ +DE ++ + Q
Sbjct: 61 EFSDTLEL-NASDRRSQDALMRSAGEASATRSLFNHDLK-LIILDEVDGIHGNEDRGGVQ 118
Query: 108 EFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKK 167
I E H ++L A+ DP +I+ R + L ++ S + +
Sbjct: 119 AINRIIKESRHPMVLTAN--DPYSKRLQSIKPRCRVLNLRKVHTSSIAAALRRICRAEGI 176
Query: 168 QIEPGAKTYLLNNSAGDARALLNLLDLSAKIEDPI 202
+ L S GD R+ +N L+ A+ E+ I
Sbjct: 177 ECPDDVLRELAKRSRGDLRSAINDLEAMAEGEERI 211
>ref|NP_594412.1| (NC_003424) Replication factor C 36 KD subunit; activator 1 36 kd
subunit [Schizosaccharomyces pombe]
emb|CAB92098.1| (AL356333) Replication factor C 36 KD subunit; activator 1 36 kd
subunit [Schizosaccharomyces pombe]
Length = 142
Score = 47.4 bits (111), Expect = 3e-04
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP---- 64
P +LED + + ++ + L K + S PH FYGPPG GKTS A + P
Sbjct: 31 PANLEDVVSHKDII---STLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYGPNYRN 87
Query: 65 -ILLFNATDFK-LEDLRLKLKNYQNT 88
++ NA+D + ++ +R ++KN+ +T
Sbjct: 88 QLMELNASDDRGIDAVREQIKNFAST 113
>ref|NP_633450.1| (NC_003901) replication factor C subunit [Methanosarcina mazei
Goe1]
gb|AAM31122.1| (AE013376) replication factor C subunit [Methanosarcina mazei Goe1]
Length = 341
Score = 47.0 bits (110), Expect = 4e-04
Identities = 76/318 (23%), Positives = 122/318 (37%), Gaps = 66/318 (20%)
Query: 11 SLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYML-----ERPI 65
+LE LG EH V L + +QS+ PH FYGP GKT+ A +A L +
Sbjct: 13 TLERLLGNEHAV---KTLSELVQSRTLPHLIFYGPENSGKTTAALALARQLYGDTWKNNF 69
Query: 66 LLFNATDFKLEDLRLKLKN---------------YQNTL------------LKP------ 92
FNA+DF + R +++ Y++ + + P
Sbjct: 70 AYFNASDFFNQGKRYLVRDRRFVRFIGTDDPKKIYKSVIDIFKEIINEYAGMAPLDADYK 129
Query: 93 VVFIDETHRLNKTQQEFLLPIMEKDHALI-LGASTQDPNYSLSHAIRSRS----FIFELT 147
+++ID L+ Q L IMEK A ST P+ +S +RSR F +
Sbjct: 130 LIYIDNAESLSSDAQHALRRIMEKYSATCRFILSTTRPSKLIS-PLRSRGLQVFFAYVSD 188
Query: 148 PLNKSDLDRLCAKALTLLKKQIEPGAKTYLLNNSAGDARALLNLLDL------SAKIEDP 201
L K L+R+ ++ GA +L S G+ + L L SA+I +
Sbjct: 189 SLVKPHLERIALSE----DLELSDGALDAILYLSKGNIARAVQTLQLAALKAESAEITEE 244
Query: 202 ITLKTLQSLRPHSLND-------GSYSDDTHYNLTSALIKSLRGSDENASIYYLARLIAG 254
I + R +++ G + + K L G+D + LI
Sbjct: 245 IVFEATMKGRDETVDSLLEAALAGDFPRGRQLIDEMIIEKGLSGTDILEGL--SEALIDS 302
Query: 255 GENPEFIARRLVIFASED 272
GE + +AR ++ + D
Sbjct: 303 GERDKDVARLIIEISDAD 320
>ref|NP_344797.1| (NC_003028) Holliday junction DNA helicase RuvB [Streptococcus
pneumoniae TIGR4]
sp|Q97SR6|RUVB_STRPN Holliday junction DNA helicase ruvB
gb|AAK74437.1| (AE007339) Holliday junction DNA helicase RuvB [Streptococcus
pneumoniae TIGR4]
Length = 332
Score = 46.2 bits (108), Expect = 7e-04
Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 10/114 (8%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKA--LQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP 64
L P+ L +++GQ+ + + +A ++ + H +GPPG+GKT++A +IA L
Sbjct: 20 LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKP--VVFIDETHRLNKTQQEFLLPIME 115
+ + K DL L + L+P V+FIDE HRL + +E L ME
Sbjct: 80 LKQTSGPVIEKAGDLVAILND-----LEPGDVLFIDEIHRLPMSVEEVLYSAME 128
>ref|NP_247879.1| (NC_000909) activator 1 (replication factor C), 53 KD subunit
[Methanococcus jannaschii] [Methanocaldococcus
jannaschii]
pir||D64410 replication factor C large chain homolog - Methanococcus jannaschii
gb|AAB98888.1| (U67532) activator 1 (replication factor C), 53 KD subunit
[Methanococcus jannaschii] [Methanocaldococcus
jannaschii]
Length = 516
Score = 46.2 bits (108), Expect = 7e-04
Identities = 61/293 (20%), Positives = 119/293 (39%), Gaps = 28/293 (9%)
Query: 1 MSLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFY-GPPGVGKTSLAQIIAY 59
+S PKSL+D G E + K ++ P GPPG GKT+LA +A
Sbjct: 2 LSWVEKYRPKSLKDVAGHEKVKEKLKTWIESYLKGETPKPILLVGPPGCGKTTLAYALAN 61
Query: 60 MLERPILLFNATDFKLEDLRLKLKNYQNTL-----LKPVVFIDETHRLNKTQ-----QEF 109
++ NA+D + K+ + T K ++ +DE ++ + E
Sbjct: 62 DYGFEVIELNASDKRNSSAIKKVVGHAATSSSIFGKKFLIVLDEVDGISGKEDAGGVSEL 121
Query: 110 LLPIMEKDHALILGASTQDPNYSLSHAIRS---RSFIFELTPLNKSDLDRLCAKALTLLK 166
+ I + + +IL A N + + +IRS + +L P++ + + ++ K
Sbjct: 122 IKVIKKAKNPIILTA-----NDAYAPSIRSLLPYVEVIQLNPVHTNSVYKVLKKIAEKEG 176
Query: 167 KQIEPGAKTYLLNNSAGDARALLNLLDLSAKIEDPITLKTLQSLRPHSLNDGSYSD---- 222
++ + +SAGD R+ +N L+ A + ++ + Q L P + + D
Sbjct: 177 LDVDDKTLKMIAQHSAGDLRSAINDLEALA-LSGDLSYEAAQKL-PDRKREANIFDALRV 234
Query: 223 ---DTHYNLTSALIKSLRGSDENASIYYLARLIAGGENPEFIARRLVIFASED 272
THY + + + ++ + + + + E PE +AR + D
Sbjct: 235 ILKTTHYGIATTALMNVDETPDVVIEWIAENVPKEYEKPEEVARAFEYLSKAD 287
>ref|NP_615114.1| (NC_003552) replication factor C subunit [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM03594.1| (AE010671) replication factor C subunit [Methanosarcina acetivorans
str. C2A] [Methanosarcina acetivorans C2A]
Length = 344
Score = 45.8 bits (107), Expect = 9e-04
Identities = 81/317 (25%), Positives = 124/317 (38%), Gaps = 62/317 (19%)
Query: 10 KSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYML-----ERP 64
++LE LG EH V L + LQS PH FYGP GKT+ + +A L +
Sbjct: 15 ETLEGMLGNEHAV---RTLSELLQSGTLPHLIFYGPENSGKTTASLALARELYGETWKNN 71
Query: 65 ILLFNATDFKLEDLRLKLKN---------------YQNT--LLKPVV------------- 94
+ FNA+DF + R +++ Y++ + K VV
Sbjct: 72 FVYFNASDFFDQGKRYLVRDKRFVRILGTDDPKKIYKSVIDIFKEVVNEYAGMASIDADY 131
Query: 95 ---FIDETHRLNKTQQEFLLPIMEK-DHALILGASTQDPNYSLSHAIRSRS----FIFEL 146
+ID L+ Q L IMEK ST P+ +S +RSR F +
Sbjct: 132 KIIYIDNAESLSSDAQHALRRIMEKYSSTCRFILSTTRPSKLIS-PLRSRGLQVFFAYVP 190
Query: 147 TPLNKSDLDRLC-AKALTLLKKQIEPGAKTYLLNNSAGDARALLNLLDL---SAKIEDPI 202
L K+ L+R+ A+ L L ++ A YL + A L L L A+I + I
Sbjct: 191 DSLLKTHLERIALAEKLKLSDGALD--AVLYLAKGNVARAVQTLQLAALRSEGAEITEEI 248
Query: 203 TLKTLQSLRPHSLND-------GSYSDDTHYNLTSALIKSLRGSDENASIYYLARLIAGG 255
+ R ++++ G ++ + K L G+D + LI G
Sbjct: 249 VYEATMKGRDETIDELLEAALAGDFARGRQLIDGMIIEKGLSGTDIFEGL--SEALIDSG 306
Query: 256 ENPEFIARRLVIFASED 272
E IAR +V + D
Sbjct: 307 ETDADIARLIVSISEAD 323
>ref|NP_357832.1| (NC_003098) Branch migration of Holliday structures [Streptococcus
pneumoniae R6]
gb|AAK99042.1| (AE008405) Branch migration of Holliday structures [Streptococcus
pneumoniae R6]
Length = 332
Score = 45.8 bits (107), Expect = 9e-04
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 10/114 (8%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKA--LQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP 64
L P+ L +++GQ+ + + +A ++ + H +GPPG+GKT++A +IA L
Sbjct: 20 LRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVN 79
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKP--VVFIDETHRLNKTQQEFLLPIME 115
+ + K DL L L+P V+FIDE HRL + +E L ME
Sbjct: 80 LKQTSGPVIEKAGDLVAILNE-----LEPGDVLFIDEIHRLPMSVEEVLYSAME 128
>ref|NP_500069.1| (NM_067668) DNA replication factor [Caenorhabditis elegans]
gb|AAB88360.1| (AF036699) C. elegans RFC-2 protein (corresponding sequence
F58F6.4) [Caenorhabditis elegans]
Length = 334
Score = 45.8 bits (107), Expect = 9e-04
Identities = 45/197 (22%), Positives = 84/197 (41%), Gaps = 17/197 (8%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSK-HFPHAFFYGPPGVGKTS-----LAQIIAYMLE 62
PK L D +G E++V + K + + + P+ GPPG GKT+ +++ ++
Sbjct: 18 PKVLADIVGNENIVER----LKVIGHEGNVPNIVLSGPPGCGKTTSVWALARELLGDKVK 73
Query: 63 RPILLFNATDFK-LEDLRLKLKNYQNTLL------KPVVFIDETHRLNKTQQEFLLPIME 115
+L NA+D + ++ +R ++K + T + ++ +DE + Q+ L ME
Sbjct: 74 EAVLELNASDERGIDVVRHRIKTFAQTKVTLPEGRHKIIILDEADSMTDGAQQALRRTME 133
Query: 116 KDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIEPGAKT 175
A + + + I+SR + T L+ L + K + G
Sbjct: 134 MYTKTTRFALACNQSEKIIEPIQSRCALLRYTKLSPVQLLTRVKEVAKAEKVNYDDGGLE 193
Query: 176 YLLNNSAGDARALLNLL 192
+L + GD R LN L
Sbjct: 194 AILFTAQGDMRQALNNL 210
>gb|AAC45724.1| (U55214) RuvB' [Treponema pallidum]
Length = 82
Score = 43.9 bits (102), Expect = 0.003
Identities = 24/54 (44%), Positives = 31/54 (56%), Gaps = 2/54 (3%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIA 58
L P+ L+DFLGQE +A + ++ H F GPPGVGKT+LA I A
Sbjct: 24 LRPRLLKDFLGQEKTKRNLRLFIQAARDRNESLDHLFLIGPPGVGKTTLAHITA 77
>ref|NP_142123.1| (NC_000961) replication factor C subunit [Pyrococcus horikoshii]
pir||G71231 probable replication factor C subunit - Pyrococcus horikoshii
dbj|BAA29182.1| (AP000001) 468aa long hypothetical replication factor C subunit
[Pyrococcus horikoshii]
Length = 468
Score = 43.5 bits (101), Expect = 0.004
Identities = 39/190 (20%), Positives = 79/190 (41%), Gaps = 10/190 (5%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHA---FFYGPPGVGKTSLAQIIAYMLERPI 65
P+ L + + QE + K ++ + P GPPG GKT+ +A+ +
Sbjct: 12 PRKLSEIVNQEQALEKVRAWIESWLHGNPPKKKALLLAGPPGSGKTTTVYALAHEYNFEV 71
Query: 66 LLFNATDFKLEDLRLKLKNYQNTL-----LKPVVFIDETHRLNKTQQEFLLPIMEKDHAL 120
+ NA+D + + + T+ + ++F+DE + + + +++K
Sbjct: 72 IELNASDERTYNKIARYVQAAYTMDIMGKRRKIIFLDEADNIEPSGAPEIAKLIDKARNP 131
Query: 121 ILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIEPGAKTYLLNN 180
I+ A+ + + IR R+ + E LN+ D+ + L + T +
Sbjct: 132 IIMAANH--YWEVPKEIRDRAELVEYKRLNQRDVISALVRILKREGITVPKEILTEIAKR 189
Query: 181 SAGDARALLN 190
S+GD RA +N
Sbjct: 190 SSGDLRAAIN 199
>ref|NP_248426.1| (NC_000909) activator 1 (replication factor C), 35 KD subunit
[Methanococcus jannaschii] [Methanocaldococcus
jannaschii]
pir||E64477 replication factor C homolog - Methanococcus jannaschii
gb|AAB99433.1| (U67583) activator 1 (replication factor C), 35 KD subunit
[Methanococcus jannaschii] [Methanocaldococcus
jannaschii]
Length = 1847
Score = 43.5 bits (101), Expect = 0.004
Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGK 50
PK+L+D +GQ+ +V + L K ++ K PH F GPPGVGK
Sbjct: 15 PKTLDDIVGQDEIVKR---LKKYVEKKSMPHLLFSGPPGVGK 53
>ref|NP_070024.1| (NC_000917) activator 1, replication factor C, 53 KD subunit
[Archaeoglobus fulgidus]
pir||B69399 activator 1, replication factor C, 53 KD subunit homolog -
Archaeoglobus fulgidus
gb|AAB90051.1| (AE001022) activator 1, replication factor C, 53 KD subunit
[Archaeoglobus fulgidus]
Length = 479
Score = 43.1 bits (100), Expect = 0.006
Identities = 48/216 (22%), Positives = 92/216 (42%), Gaps = 23/216 (10%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERPILLF 68
PK+LE+ + + ++ + K+ + P GPPGVGKTSLA +A + +
Sbjct: 9 PKTLEEVVADKSIITRVIKWAKSWKRGSKP-LLLAGPPGVGKTSLALALANTMGWEAVEL 67
Query: 69 NATD---FKLEDLRLKLKNYQNTLLK------------PVVFIDETHRLNKTQ----QEF 109
NA+D +++ + + + T+ ++ +DE ++K + +
Sbjct: 68 NASDQRSWRVIERIVGEGAFNETISDEGEFLSSRIGKLKLIILDEVDNIHKKEDVGGEAA 127
Query: 110 LLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQI 169
L+ ++++ A L DP Y LS +R+ + L K + R+ + ++
Sbjct: 128 LIRLIKRKPAQPLILIANDP-YKLSPELRNLCEMINFKRLTKQQVARVLERIALKEGIKV 186
Query: 170 EPGAKTYLLNNSAGDARALLNLLDLSAKIEDPITLK 205
+ + N+ GD RA +N D A E LK
Sbjct: 187 DKSVLLKIAENAGGDLRAAIN--DFQALAEGKEELK 220
>ref|NP_077667.1| (NC_002687) EsV-1-182 [Ectocarpus siliculosus virus]
gb|AAK14596.1|AF204951_181 (AF204951) EsV-1-182 [Ectocarpus siliculosus virus]
Length = 326
Score = 43.1 bits (100), Expect = 0.006
Identities = 48/204 (23%), Positives = 82/204 (39%), Gaps = 24/204 (11%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYML------E 62
P+ + D + +HL L A ++ PH F+GPPG GKTS +A L
Sbjct: 10 PRRVRDVVHHDHL---KRVLNGAEKTGDLPHLLFHGPPGTGKTSTILALARTLLGEGNMR 66
Query: 63 RPILLFNATDFK-LEDLRLKLKNYQNTLLK---------PVVFIDETHRLNKTQQEFLLP 112
+L NA+D + L+ +R K+K + + +V +DE + Q L
Sbjct: 67 ERVLELNASDERGLDVVRDKIKTFSKMSISSFQPGCPPFKLVILDEADTMTADAQSALRR 126
Query: 113 IMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPL----NKSDLDRLCAKALTLLKKQ 168
ME + + + + SR F + L K L +C + ++ +
Sbjct: 127 TMETHSVVTRFCLVCNYVSKIIAPLASRCAKFRFSTLAPKSMKGRLLHICERE-NIIFEN 185
Query: 169 IEPGAKTYLLNNSAGDARALLNLL 192
++ +S GD R+ +NLL
Sbjct: 186 CSRSVLDAIVKSSRGDMRSAVNLL 209
>ref|NP_224011.1| (NC_000921) ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
sp|Q9ZJL3|LON_HELPJ ATP-dependent protease La
pir||A71825 endopeptidase La (EC 3.4.21.53) - Helicobacter pylori (strain J99)
gb|AAD06875.1| (AE001552) ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 42.4 bits (98), Expect = 0.009
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 14/78 (17%)
Query: 42 FYGPPGVGKTSLAQIIAYMLERPILLFNATDFK-LEDLRLKLKNYQNTL----------- 89
FYGPPGVGKTSLA IA +ERP++ + + +LR + Y ++
Sbjct: 365 FYGPPGVGKTSLANSIAKAIERPLVRIALGGLEDVNELRGHRRTYIGSMPGRIVQGLIEA 424
Query: 90 --LKPVVFIDETHRLNKT 105
+ PV+ +DE +++++
Sbjct: 425 KKMNPVMVLDEIDKVDRS 442
>ref|NP_562307.1| (NC_003366) Lon-like ATP-dependent protease [Clostridium
perfringens]
dbj|BAB81097.1| (AP003190) Lon-like ATP-dependent protease [Clostridium
perfringens]
Length = 570
Score = 42.4 bits (98), Expect = 0.009
Identities = 24/55 (43%), Positives = 31/55 (55%), Gaps = 3/55 (5%)
Query: 3 LTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQII 57
LT P +LE+ +GQE + L AL + H YGPPGVGKT+ A+II
Sbjct: 59 LTEKSRPSNLEEIIGQEKGI---KALKAALCGPNPQHVIIYGPPGVGKTAAARII 110
>ref|NP_208170.1| (NC_000915) ATP-dependent protease (lon) [Helicobacter pylori
26695]
sp|P55995|LON_HELPY ATP-dependent protease La
pir||C64692 endopeptidase La (EC 3.4.21.53) - Helicobacter pylori (strain
26695)
gb|AAD08421.1| (AE000638) ATP-dependent protease (lon) [Helicobacter pylori 26695]
Length = 835
Score = 42.4 bits (98), Expect = 0.009
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 14/78 (17%)
Query: 42 FYGPPGVGKTSLAQIIAYMLERPILLFNATDFK-LEDLRLKLKNYQNTL----------- 89
FYGPPGVGKTSLA IA +ERP++ + + +LR + Y ++
Sbjct: 365 FYGPPGVGKTSLANSIAKAIERPLVRIALGGLEDVNELRGHRRTYIGSMPGRIVQGLIEA 424
Query: 90 --LKPVVFIDETHRLNKT 105
+ PV+ +DE +++++
Sbjct: 425 KKMNPVMVLDEIDKVDRS 442
>ref|NP_577821.1| (NC_003413) replication factor C, large subunit [Pyrococcus
furiosus DSM 3638]
dbj|BAA88155.1| (AB034755) replication factor C large subunit [Pyrococcus furiosus]
gb|AAL80216.1| (AE010135) replication factor C, large subunit [Pyrococcus furiosus
DSM 3638]
Length = 479
Score = 42.4 bits (98), Expect = 0.009
Identities = 43/196 (21%), Positives = 83/196 (41%), Gaps = 22/196 (11%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHA---FFYGPPGVGKTSLAQIIAYMLERPI 65
PK L + + QE + K ++ H P GPPG GKT+ +A +
Sbjct: 12 PKKLSEIVNQEEAIEKVRAWIESWLHGHPPKKKALLLAGPPGSGKTTTVYALANEYNFEV 71
Query: 66 LLFNATDFKLEDLRLKLKNYQNTLL--------KPVVFIDETHRLNKTQQEFLLPIMEKD 117
+ NA+D + + K+ Y + ++F+DE + + + + +++K
Sbjct: 72 IELNASDERTYE---KISRYVQAAYTMDILGKRRKIIFLDEADNIEPSGAKEIAKLIDKA 128
Query: 118 HALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQIEPGAKTYL 177
I+ A+ + + + IR ++ + E L + D + + +LK++ K L
Sbjct: 129 KNPIIMAANK--YWEVPKEIREKAELVEYKRLTQRD---VMNALIRILKREGITVPKEIL 183
Query: 178 L---NNSAGDARALLN 190
L S+GD RA +N
Sbjct: 184 LEIAKRSSGDLRAAIN 199
>ref|NP_268363.1| (NC_002662) DNA helicase RuvB [Lactococcus lactis subsp. lactis]
sp|Q9CDL3|RUVB_LACLA Holliday junction DNA helicase ruvB
gb|AAK06304.1|AE006449_10 (AE006449) DNA helicase RuvB [Lactococcus lactis subsp. lactis]
Length = 324
Score = 42.4 bits (98), Expect = 0.009
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 8/113 (7%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKH--FPHAFFYGPPGVGKTSLAQIIAYMLERP 64
L P+ ++GQ+ + + KA + + H +GPPG+GKT++A +IA L
Sbjct: 11 LRPQFFNQYIGQDKVKEQLEIFIKAAKMREEVLDHVLLFGPPGLGKTTMAFVIANELGVN 70
Query: 65 ILLFNATDFKLEDLRLKLKNYQNTLLKP--VVFIDETHRLNKTQQEFLLPIME 115
I + + + N L+P V+FIDE HR+ +E L ME
Sbjct: 71 IKQTAGPAIEKPGDLVAILNE----LEPGDVLFIDEIHRMPMQVEEVLYSAME 119
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.319 0.137 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 250,553,543
Number of Sequences: 1026957
Number of extensions: 10310340
Number of successful extensions: 29559
Number of sequences better than 1.0e-02: 224
Number of HSP's better than 0.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 153
Number of HSP's that attempted gapping in prelim test: 29110
Number of HSP's gapped (non-prelim): 249
length of query: 391
length of database: 324,149,939
effective HSP length: 123
effective length of query: 268
effective length of database: 197,834,228
effective search space: 53019573104
effective search space used: 53019573104
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 98 (42.4 bits)