BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645643|ref|NP_207819.1| hypothetical protein
[Helicobacter pylori 26695]
(178 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207819.1| (NC_000915) hypothetical protein [Helicoba... 354 3e-97
ref|NP_223114.1| (NC_000921) putative [Helicobacter pylori ... 316 7e-86
ref|NP_347472.1| (NC_003030) Putative beta-D-galactosidase ... 59 2e-08
ref|NP_346130.1| (NC_003028) conserved hypothetical protein... 49 2e-05
ref|NP_246192.1| (NC_002663) unknown [Pasteurella multocida... 46 2e-04
ref|NP_345785.1| (NC_003028) conserved hypothetical protein... 45 3e-04
gb|AAK69522.1|AF282849_3 (AF282849) YiaL [Klebsiella oxytoca] 45 5e-04
ref|NP_462569.1| (NC_003197) putative cytoplasmic protein [... 44 6e-04
ref|NP_461996.1| (NC_003197) putative mannitol dehydrogenas... 44 8e-04
ref|NP_406511.1| (NC_003143) conserved hypothetical protein... 43 0.001
ref|NP_458258.1| (NC_003198) conserved hypothetical protein... 42 0.002
>ref|NP_207819.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||E64648 hypothetical protein HP1029 - Helicobacter pylori (strain 26695)
gb|AAD08084.1| (AE000611) H. pylori predicted coding region HP1029 [Helicobacter
pylori 26695]
Length = 178
Score = 354 bits (908), Expect = 3e-97
Identities = 178/178 (100%), Positives = 178/178 (100%)
Query: 1 MAIFGELSSLGHLFKKTQELEILHEYLKEVMQKGSKANQRVLNLATNTEFQVPLGHGIFS 60
MAIFGELSSLGHLFKKTQELEILHEYLKEVMQKGSKANQRVLNLATNTEFQVPLGHGIFS
Sbjct: 1 MAIFGELSSLGHLFKKTQELEILHEYLKEVMQKGSKANQRVLNLATNTEFQVPLGHGIFS 60
Query: 61 IEQSYCLEHAKESEKGFFESHKKYVDFQLIVKGVEGAKAVGINQAVIKNPYDEKRDLIVY 120
IEQSYCLEHAKESEKGFFESHKKYVDFQLIVKGVEGAKAVGINQAVIKNPYDEKRDLIVY
Sbjct: 61 IEQSYCLEHAKESEKGFFESHKKYVDFQLIVKGVEGAKAVGINQAVIKNPYDEKRDLIVY 120
Query: 121 EPVSEASFLRLHAGMLAIFFENDAHALRFYGESFEKYREEPIFKAVVKAPKGLIKLKL 178
EPVSEASFLRLHAGMLAIFFENDAHALRFYGESFEKYREEPIFKAVVKAPKGLIKLKL
Sbjct: 121 EPVSEASFLRLHAGMLAIFFENDAHALRFYGESFEKYREEPIFKAVVKAPKGLIKLKL 178
>ref|NP_223114.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71939 hypothetical protein jhp0395 - Helicobacter pylori (strain J99)
gb|AAD05970.1| (AE001473) putative [Helicobacter pylori J99]
Length = 178
Score = 316 bits (810), Expect = 7e-86
Identities = 158/178 (88%), Positives = 165/178 (91%)
Query: 1 MAIFGELSSLGHLFKKTQELEILHEYLKEVMQKGSKANQRVLNLATNTEFQVPLGHGIFS 60
MAIFGEL SLGHLFKKTQELEILH YL++VMQKGS+ANQRVLNLA NTEFQVPL HGIFS
Sbjct: 1 MAIFGELGSLGHLFKKTQELEILHGYLQDVMQKGSEANQRVLNLAINTEFQVPLEHGIFS 60
Query: 61 IEQSYCLEHAKESEKGFFESHKKYVDFQLIVKGVEGAKAVGINQAVIKNPYDEKRDLIVY 120
IEQSYCLEHAKE EKGFFESH++YVDFQLI+KGVEGAK IN+AVIK PYDEKRDLIVY
Sbjct: 61 IEQSYCLEHAKEGEKGFFESHRQYVDFQLIIKGVEGAKVADINRAVIKTPYDEKRDLIVY 120
Query: 121 EPVSEASFLRLHAGMLAIFFENDAHALRFYGESFEKYREEPIFKAVVKAPKGLIKLKL 178
EPVSEASFL L AGMLAIF ENDAHALRFYGESFEKYREEPIFKAVVK PKGLIKLKL
Sbjct: 121 EPVSEASFLHLDAGMLAIFLENDAHALRFYGESFEKYREEPIFKAVVKMPKGLIKLKL 178
>ref|NP_347472.1| (NC_003030) Putative beta-D-galactosidase [Clostridium
acetobutylicum]
gb|AAK78812.1|AE007599_8 (AE007599) Putative beta-D-galactosidase [Clostridium
acetobutylicum]
Length = 152
Score = 59.3 bits (142), Expect = 2e-08
Identities = 38/119 (31%), Positives = 57/119 (46%), Gaps = 12/119 (10%)
Query: 35 SKANQRVLNLATNTEFQVPLGHGIFSIE--------QSYCLEHAKESEKGFFESHKKYVD 86
+K +R NT+ Q L G + I+ QSY K+ + FESH+KY+D
Sbjct: 16 NKEMERAFEFLKNTDIQ-KLSDGKYEIDSDNVYASVQSY---ETKDKSEKKFESHEKYID 71
Query: 87 FQLIVKGVEGAKAVGINQAVIKNPYDEKRDLIVYEPVSEASFLRLHAGMLAIFFENDAH 145
Q IVKG E + I ++ Y +++D+I Y+ +S + L IFF ND H
Sbjct: 72 IQYIVKGKEFIEWSPIQNLSVEEAYSDEKDVIFYKDGKLSSKINLEDNYFCIFFPNDGH 130
>ref|NP_346130.1| (NC_003028) conserved hypothetical protein [Streptococcus
pneumoniae TIGR4]
ref|NP_359128.1| (NC_003098) Hypothetical protein [Streptococcus pneumoniae R6]
gb|AAC44392.1| (U43526) ORF-1 [Streptococcus pneumoniae]
gb|AAK75770.1| (AE007462) conserved hypothetical protein [Streptococcus pneumoniae
TIGR4]
gb|AAL00339.1| (AE008522) Hypothetical protein [Streptococcus pneumoniae R6]
Length = 150
Score = 49.3 bits (116), Expect = 2e-05
Identities = 29/104 (27%), Positives = 48/104 (45%), Gaps = 8/104 (7%)
Query: 66 CLEHAKESEKG-FFESHKKYVDFQLIVKGVEGAKAVGINQAVIKNPYDEKRDLIVYEPVS 124
C + + + G FFE+H+KY+D L+++ E + YDE++D+ +Y
Sbjct: 50 CFTYLADGQAGAFFETHQKYLDIHLVLENEEAMAVTSPENVSVTQEYDEEKDIELYTGKV 109
Query: 125 EASFLRLHAGMLAIFFENDAHALRFYGESFEKYREEPIFKAVVK 168
E + L AG I F D H + + +EP+ K V K
Sbjct: 110 E-QLVHLRAGECLITFPEDLHQPKV------RINDEPVKKVVFK 146
>ref|NP_246192.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK03339.1| (AE006164) unknown [Pasteurella multocida]
Length = 158
Score = 45.8 bits (107), Expect = 2e-04
Identities = 24/68 (35%), Positives = 34/68 (49%), Gaps = 1/68 (1%)
Query: 79 ESHKKYVDFQLIVKGVEG-AKAVGINQAVIKNPYDEKRDLIVYEPVSEASFLRLHAGMLA 137
E H+ Y+D Q + G E A+ + I PYD RD++ Y+ V L + G A
Sbjct: 63 EVHRHYIDVQYLHSGFERIGVAIDLGNNDIAKPYDATRDILFYQNVENEVQLIMRPGHFA 122
Query: 138 IFFENDAH 145
IFF +D H
Sbjct: 123 IFFPSDVH 130
>ref|NP_345785.1| (NC_003028) conserved hypothetical protein [Streptococcus
pneumoniae TIGR4]
gb|AAK75425.1| (AE007431) conserved hypothetical protein [Streptococcus pneumoniae
TIGR4]
Length = 152
Score = 45.4 bits (106), Expect = 3e-04
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 66 CLEHAKESEKG-FFESHKKYVDFQLIVKGVEGAKAVGINQAVIKNPYDEKRDLIVYEPVS 124
C+ + + G FE+HKKY+D ++V+ E +A + P+ E++D+ Y+
Sbjct: 50 CMTYLADGVPGDIFETHKKYLDIHIVVENTEKMAVTSPVRAQSRVPFSEEKDIAFYDS-K 108
Query: 125 EASFLRLHAGMLAIFFENDAHALRFYGESFEKYREEPIFKAVVK 168
+ + L G + + FE D H + + +E + K V+K
Sbjct: 109 DYQIVELLPGNMLVTFEEDLHQPKIH------CNDETVKKLVIK 146
>gb|AAK69522.1|AF282849_3 (AF282849) YiaL [Klebsiella oxytoca]
Length = 154
Score = 44.7 bits (104), Expect = 5e-04
Identities = 38/138 (27%), Positives = 55/138 (39%), Gaps = 12/138 (8%)
Query: 37 ANQRVLNLATNTEFQVPLGHGIFSIEQSYCLEHA-----KESEKGFFESHKKYVDFQLIV 91
A +R L+ T+F L G+ I+ +++ + E H++Y+D Q +
Sbjct: 17 AIERALDFLRTTDFHA-LAPGVVEIDGQNIFAQVIDLTTRDAAENRPEVHRRYLDIQFLA 75
Query: 92 KGVEGAK-AVGINQAVIKNPYDEKRDLIVYEPVSEASFLRLHAGMLAIFFENDAHALRFY 150
G E A+ I E+RD+I Y SF + G AIFF D H
Sbjct: 76 SGEEKIGIAIDTGNNQISESLLEQRDIIFYHDSEHESFFEMTPGNYAIFFPQDVHR---- 131
Query: 151 GESFEKYREEPIFKAVVK 168
K PI K VVK
Sbjct: 132 -PGCNKTVATPIRKIVVK 148
>ref|NP_462569.1| (NC_003197) putative cytoplasmic protein [Salmonella typhimurium
LT2]
gb|AAL22528.1| (AE008870) putative cytoplasmic protein [Salmonella typhimurium
LT2]
Length = 154
Score = 44.3 bits (103), Expect = 6e-04
Identities = 37/138 (26%), Positives = 58/138 (41%), Gaps = 12/138 (8%)
Query: 37 ANQRVLNLATNTEFQVPLGHGIFSIEQSYCLEH-----AKESEKGFFESHKKYVDFQLIV 91
A ++ L+ NT+F+ L G+ I+ +++ + E H++Y+D Q +
Sbjct: 17 AIEQALDFLRNTDFRT-LEPGVVEIDGKNIFAQIIDMTTRDAAENRPEVHRRYLDIQFLA 75
Query: 92 KGVEG-AKAVGINQAVIKNPYDEKRDLIVYEPVSEASFLRLHAGMLAIFFENDAHALRFY 150
G E A+ I E+RD+I Y SF+ + G A+FF D H
Sbjct: 76 WGEEKIGVAIDTGNNQISESLLEQRDIIFYHDSEHESFIEMIPGSYALFFPQDVHR---- 131
Query: 151 GESFEKYREEPIFKAVVK 168
K PI K VVK
Sbjct: 132 -PGCNKSIATPIRKIVVK 148
>ref|NP_461996.1| (NC_003197) putative mannitol dehydrogenase [Salmonella typhimurium
LT2]
gb|AAL21955.1| (AE008841) putative mannitol dehydrogenase [Salmonella typhimurium
LT2]
Length = 157
Score = 43.9 bits (102), Expect = 8e-04
Identities = 33/121 (27%), Positives = 51/121 (41%), Gaps = 8/121 (6%)
Query: 53 PLGHGIFSIEQSYCLEHAKESEKGF---FESHKKYVDFQLIVKGVEGAKAVGINQAVIKN 109
P G S +S+ + E+ E HKKY+D Q+++ G E IK
Sbjct: 34 PAGRYELSFPESFLMISEGETHSSLNRKAELHKKYIDVQILLSGYEEIGYSNKIDTRIKE 93
Query: 110 PYDEKRDLIVYEPVSEASFLRLHAGMLAIFFENDAHALRFYGESFEKYREEPIFKAVVKA 169
D+I E V+ F+ L+ G A+F+ N H + + P+ KA+VK
Sbjct: 94 LEHLPDDIIFPECVANEQFVTLNPGDFALFYPNQVHR-----PLCTRGKPAPVKKAIVKI 148
Query: 170 P 170
P
Sbjct: 149 P 149
>ref|NP_406511.1| (NC_003143) conserved hypothetical protein [Yersinia pestis]
emb|CAC92262.1| (AJ414154) conserved hypothetical protein [Yersinia pestis]
Length = 151
Score = 43.1 bits (100), Expect = 0.001
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 72 ESEKGFFESHKKYVDFQLIVKGVEGAKAVGINQAVIKNPYDEKRDLIVYEPVSEASFLRL 131
ES+K E H+ Y D QL++ G+EG + + PY D + + + S LR+
Sbjct: 54 ESKKA--ELHRTYADVQLLISGIEGIEYSTLTPTEHLEPYHPDDDYQLIADIPDKSQLRM 111
Query: 132 HAGMLAIFFENDAH 145
GM A+F + H
Sbjct: 112 LPGMFAVFLPGEPH 125
>ref|NP_458258.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
emb|CAD07959.1| (AL627281) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 154
Score = 42.4 bits (98), Expect = 0.002
Identities = 29/91 (31%), Positives = 39/91 (41%), Gaps = 6/91 (6%)
Query: 79 ESHKKYVDFQLIVKGVEG-AKAVGINQAVIKNPYDEKRDLIVYEPVSEASFLRLHAGMLA 137
E H++Y+D Q + G E A+ I E+RD+I Y SF+ + G A
Sbjct: 63 EVHRRYLDIQFLAWGEEKIGVAIDTGNNQISESLLEQRDIIFYHDSEHESFIEMIPGSYA 122
Query: 138 IFFENDAHALRFYGESFEKYREEPIFKAVVK 168
+FF D H K PI K VVK
Sbjct: 123 LFFPQDVHR-----PGCNKSIATPIRKIVVK 148
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.320 0.138 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,117,762
Number of Sequences: 1026957
Number of extensions: 4077595
Number of successful extensions: 9850
Number of sequences better than 1.0e-02: 11
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 9842
Number of HSP's gapped (non-prelim): 11
length of query: 178
length of database: 324,149,939
effective HSP length: 113
effective length of query: 65
effective length of database: 208,103,798
effective search space: 13526746870
effective search space used: 13526746870
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 93 (40.4 bits)