BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645647|ref|NP_207823.1| hypothetical protein
[Helicobacter pylori 26695]
         (131 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207823.1|  (NC_000915) hypothetical protein [Helicoba...   264  1e-70
ref|NP_223110.1|  (NC_000921) putative [Helicobacter pylori ...   179  6e-45

>ref|NP_207823.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||A64649 hypothetical protein HP1033 - Helicobacter pylori (strain 26695)
 gb|AAD08085.1| (AE000611) H. pylori predicted coding region HP1033 [Helicobacter
           pylori 26695]
          Length = 131

 Score =  264 bits (675), Expect = 1e-70
 Identities = 131/131 (100%), Positives = 131/131 (100%)

Query: 1   MYSKILATSFSLFLNSWLKRSKLSSVPFLSKRQISKSVQAIKIDANNNAIKYPPSVDNTV 60
           MYSKILATSFSLFLNSWLKRSKLSSVPFLSKRQISKSVQAIKIDANNNAIKYPPSVDNTV
Sbjct: 1   MYSKILATSFSLFLNSWLKRSKLSSVPFLSKRQISKSVQAIKIDANNNAIKYPPSVDNTV 60

Query: 61  HNKMLSGSLNFNTENTNPKKNPTTTEKWIKFCTFIQAYPKYFKSLLKKLFKPSFGISKAP 120
           HNKMLSGSLNFNTENTNPKKNPTTTEKWIKFCTFIQAYPKYFKSLLKKLFKPSFGISKAP
Sbjct: 61  HNKMLSGSLNFNTENTNPKKNPTTTEKWIKFCTFIQAYPKYFKSLLKKLFKPSFGISKAP 120

Query: 121 VSNLETKRPAI 131
           VSNLETKRPAI
Sbjct: 121 VSNLETKRPAI 131



>ref|NP_223110.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||E71938 hypothetical protein jhp0391 - Helicobacter pylori (strain J99)
 gb|AAD05974.1| (AE001473) putative [Helicobacter pylori J99]
          Length = 91

 Score =  179 bits (453), Expect = 6e-45
 Identities = 88/91 (96%), Positives = 89/91 (97%)

Query: 1  MYSKILATSFSLFLNSWLKRSKLSSVPFLSKRQISKSVQAIKIDANNNAIKYPPSVDNTV 60
          MY KILATSFSLFLNSWLKRSKLSSVPFLSKRQISKSVQAIKIDANN AIKYPPSVDNTV
Sbjct: 1  MYFKILATSFSLFLNSWLKRSKLSSVPFLSKRQISKSVQAIKIDANNKAIKYPPSVDNTV 60

Query: 61 HNKMLSGSLNFNTENTNPKKNPTTTEKWIKF 91
          HN+MLSGSLNFNTENTNPKKNPTTTEKWIKF
Sbjct: 61 HNRMLSGSLNFNTENTNPKKNPTTTEKWIKF 91



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.315    0.129    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,432,707
Number of Sequences: 1026957
Number of extensions: 3106834
Number of successful extensions: 9065
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9063
Number of HSP's gapped (non-prelim): 2
length of query: 131
length of database: 324,149,939
effective HSP length: 107
effective length of query: 24
effective length of database: 214,265,540
effective search space: 5142372960
effective search space used: 5142372960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 90 (39.3 bits)