BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645653|ref|NP_207829.1| hypothetical protein
[Helicobacter pylori 26695]
(429 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207829.1| (NC_000915) hypothetical protein [Helicoba... 838 0.0
gb|AAD27687.1|AF125197_2 (AF125197) hypothetical protein [H... 810 0.0
ref|NP_223104.1| (NC_000921) putative [Helicobacter pylori ... 801 0.0
gb|AAL77343.1|AF443846_4 (AF443846) putative O-antigen liga... 69 8e-11
gb|AAL77359.1|AF444794_4 (AF444794) putative O-antigen liga... 68 2e-10
gb|AAL77352.1|AF444792_4 (AF444792) putative O-antigen liga... 67 3e-10
ref|NP_299277.1| (NC_002488) conserved hypothetical protein... 62 2e-08
ref|NP_418079.1| (NC_000913) O-antigen ligase; lipopolysacc... 54 3e-06
gb|AAL76927.1|AF443424_1 (AF443424) putative O-antigen liga... 54 4e-06
ref|NP_639090.1| (NC_003902) conserved hypothetical protein... 53 6e-06
gb|AAC69671.1| (AF019746) lipid A-core:surface polymer liga... 53 8e-06
ref|NP_439035.1| (NC_000907) H. influenzae predicted coding... 52 1e-05
ref|NP_229894.1| (NC_002505) conserved hypothetical protein... 52 1e-05
gb|AAL76925.1|AF443422_1 (AF443422) putative O-antigen liga... 52 1e-05
gb|AAL76924.1|AF443421_1 (AF443421) putative O-antigen liga... 52 2e-05
gb|AAL77337.1|AF443845_2 (AF443845) putative O-antigen liga... 49 9e-05
ref|NP_604135.1| (NC_003454) Hypothetical protein [Fusobact... 49 1e-04
ref|NP_520325.1| (NC_003295) PROBABLE TRANSMEMBRANE PROTEIN... 49 1e-04
ref|NP_644103.1| (NC_003919) conserved hypothetical protein... 47 4e-04
gb|AAC69682.1| (AF019747) lipid A-core:surface polymer liga... 46 7e-04
sp|P27243|RFAL_ECOLI O-antigen ligase >gi|281938|pir||D4298... 44 0.003
>ref|NP_207829.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64649 hypothetical protein HP1039 - Helicobacter pylori (strain 26695)
gb|AAD08086.1| (AE000611) H. pylori predicted coding region HP1039 [Helicobacter
pylori 26695]
Length = 429
Score = 838 bits (2164), Expect = 0.0
Identities = 429/429 (100%), Positives = 429/429 (100%)
Query: 1 MLKERLKAFFSADSVFTLIFALFFLTSFKKPLTQVLLIVLMVFLFFRCYFQASLKETFAI 60
MLKERLKAFFSADSVFTLIFALFFLTSFKKPLTQVLLIVLMVFLFFRCYFQASLKETFAI
Sbjct: 1 MLKERLKAFFSADSVFTLIFALFFLTSFKKPLTQVLLIVLMVFLFFRCYFQASLKETFAI 60
Query: 61 NHLKTMSFKWLTLAFLGVFLSIFPNMFNMHDSQTFRYNLFALNMSLTYACGALCLLFASC 120
NHLKTMSFKWLTLAFLGVFLSIFPNMFNMHDSQTFRYNLFALNMSLTYACGALCLLFASC
Sbjct: 61 NHLKTMSFKWLTLAFLGVFLSIFPNMFNMHDSQTFRYNLFALNMSLTYACGALCLLFASC 120
Query: 121 LRIKLNQKILFYSMAVANFINGLLSLVQKIYFNMPRAQGFSTVKEYVVLVSVSILGCYIY 180
LRIKLNQKILFYSMAVANFINGLLSLVQKIYFNMPRAQGFSTVKEYVVLVSVSILGCYIY
Sbjct: 121 LRIKLNQKILFYSMAVANFINGLLSLVQKIYFNMPRAQGFSTVKEYVVLVSVSILGCYIY 180
Query: 181 ALYSHNQKEKLFFTLSVFVGFLVVILSATRSATIAFVITFLILSCFILYAKKSLKPLGYM 240
ALYSHNQKEKLFFTLSVFVGFLVVILSATRSATIAFVITFLILSCFILYAKKSLKPLGYM
Sbjct: 181 ALYSHNQKEKLFFTLSVFVGFLVVILSATRSATIAFVITFLILSCFILYAKKSLKPLGYM 240
Query: 241 VVVSLILSALYVGSNALEKKGAIEQSRVQNQSFEEDLKRYAKKDADSSIGWRLERWKEAL 300
VVVSLILSALYVGSNALEKKGAIEQSRVQNQSFEEDLKRYAKKDADSSIGWRLERWKEAL
Sbjct: 241 VVVSLILSALYVGSNALEKKGAIEQSRVQNQSFEEDLKRYAKKDADSSIGWRLERWKEAL 300
Query: 301 TVLRLRPFFGMAASEKCQRLEEILSLSKSYRAKDLILCYERYDNQIIHILATRGIIGFLI 360
TVLRLRPFFGMAASEKCQRLEEILSLSKSYRAKDLILCYERYDNQIIHILATRGIIGFLI
Sbjct: 301 TVLRLRPFFGMAASEKCQRLEEILSLSKSYRAKDLILCYERYDNQIIHILATRGIIGFLI 360
Query: 361 WLFFLLVIVKIFWSGIKQNSLISFFILMTLAFYLIFGIGFDPFDFFITGSFFVGMIMMAV 420
WLFFLLVIVKIFWSGIKQNSLISFFILMTLAFYLIFGIGFDPFDFFITGSFFVGMIMMAV
Sbjct: 361 WLFFLLVIVKIFWSGIKQNSLISFFILMTLAFYLIFGIGFDPFDFFITGSFFVGMIMMAV 420
Query: 421 FLKKDKSAF 429
FLKKDKSAF
Sbjct: 421 FLKKDKSAF 429
>gb|AAD27687.1|AF125197_2 (AF125197) hypothetical protein [Helicobacter pylori]
Length = 429
Score = 810 bits (2092), Expect = 0.0
Identities = 412/429 (96%), Positives = 420/429 (97%)
Query: 1 MLKERLKAFFSADSVFTLIFALFFLTSFKKPLTQVLLIVLMVFLFFRCYFQASLKETFAI 60
MLKERLKAFFSADSVFTLIFALFFLTSFKKPLTQVLLIVLMVFLFFRCYFQASLKETF I
Sbjct: 1 MLKERLKAFFSADSVFTLIFALFFLTSFKKPLTQVLLIVLMVFLFFRCYFQASLKETFTI 60
Query: 61 NHLKTMSFKWLTLAFLGVFLSIFPNMFNMHDSQTFRYNLFALNMSLTYACGALCLLFASC 120
NHLKTM FKWLTLAFLGVFLSIFPNMFNM+DSQTFRYNLFALNMSLTYACGALCLLFAS
Sbjct: 61 NHLKTMPFKWLTLAFLGVFLSIFPNMFNMYDSQTFRYNLFALNMSLTYACGALCLLFASR 120
Query: 121 LRIKLNQKILFYSMAVANFINGLLSLVQKIYFNMPRAQGFSTVKEYVVLVSVSILGCYIY 180
LRIKLNQK+LFYSM VANFINGLLSLVQKIYFNMPRAQGFSTVKEYVVLVSVSILGCYIY
Sbjct: 121 LRIKLNQKVLFYSMTVANFINGLLSLVQKIYFNMPRAQGFSTVKEYVVLVSVSILGCYIY 180
Query: 181 ALYSHNQKEKLFFTLSVFVGFLVVILSATRSATIAFVITFLILSCFILYAKKSLKPLGYM 240
ALYSHNQKEKLFFTLSVFVGFLVVILSATRSATIAFV TFLILSCFILYAKKSL+PLGYM
Sbjct: 181 ALYSHNQKEKLFFTLSVFVGFLVVILSATRSATIAFVATFLILSCFILYAKKSLRPLGYM 240
Query: 241 VVVSLILSALYVGSNALEKKGAIEQSRVQNQSFEEDLKRYAKKDADSSIGWRLERWKEAL 300
+VVSL+LS LY+GSNALEKKGAIEQSRVQNQSFEEDLKRYAKKDADSSIGWRLERWKEAL
Sbjct: 241 IVVSLVLSTLYMGSNALEKKGAIEQSRVQNQSFEEDLKRYAKKDADSSIGWRLERWKEAL 300
Query: 301 TVLRLRPFFGMAASEKCQRLEEILSLSKSYRAKDLILCYERYDNQIIHILATRGIIGFLI 360
TVLRLRP FGMAASEKCQRLEEILSLSKSYRAKDLILCYERYDNQIIH+LATRGIIGFLI
Sbjct: 301 TVLRLRPLFGMAASEKCQRLEEILSLSKSYRAKDLILCYERYDNQIIHVLATRGIIGFLI 360
Query: 361 WLFFLLVIVKIFWSGIKQNSLISFFILMTLAFYLIFGIGFDPFDFFITGSFFVGMIMMAV 420
WLFFLLVIVKIFWSGIKQNSLIS FIL TLAFYLIFGIGFDPFDFFITGSFFVG+IMMAV
Sbjct: 361 WLFFLLVIVKIFWSGIKQNSLISLFILTTLAFYLIFGIGFDPFDFFITGSFFVGIIMMAV 420
Query: 421 FLKKDKSAF 429
FLKKDKSAF
Sbjct: 421 FLKKDKSAF 429
>ref|NP_223104.1| (NC_000921) putative [Helicobacter pylori J99]
pir||G71937 hypothetical protein jhp0385 - Helicobacter pylori (strain J99)
gb|AAD05962.1| (AE001473) putative [Helicobacter pylori J99]
Length = 429
Score = 801 bits (2068), Expect = 0.0
Identities = 406/424 (95%), Positives = 418/424 (97%)
Query: 6 LKAFFSADSVFTLIFALFFLTSFKKPLTQVLLIVLMVFLFFRCYFQASLKETFAINHLKT 65
+KAFFSADSVFTLIFALFFLTSFKKPLTQVLLIVLMVFLFFRCYFQASLKETF INHLKT
Sbjct: 1 MKAFFSADSVFTLIFALFFLTSFKKPLTQVLLIVLMVFLFFRCYFQASLKETFRINHLKT 60
Query: 66 MSFKWLTLAFLGVFLSIFPNMFNMHDSQTFRYNLFALNMSLTYACGALCLLFASCLRIKL 125
M FKWLTLAFLGVFLSIFPNMFNM+DSQTFRYNLFALNMSLTYACGALCLLF+S LRIKL
Sbjct: 61 MPFKWLTLAFLGVFLSIFPNMFNMYDSQTFRYNLFALNMSLTYACGALCLLFSSRLRIKL 120
Query: 126 NQKILFYSMAVANFINGLLSLVQKIYFNMPRAQGFSTVKEYVVLVSVSILGCYIYALYSH 185
NQK+LFYSMAVANFINGLLSLVQKIYFNMPRAQGFSTVKEYVVLVSVSILGCYIYALYS
Sbjct: 121 NQKVLFYSMAVANFINGLLSLVQKIYFNMPRAQGFSTVKEYVVLVSVSILGCYIYALYSQ 180
Query: 186 NQKEKLFFTLSVFVGFLVVILSATRSATIAFVITFLILSCFILYAKKSLKPLGYMVVVSL 245
NQKEKLFFTLSVFVGFLVVILSATRSATIAFV TFLILSCFILYAKKSLKPLGYMVVVSL
Sbjct: 181 NQKEKLFFTLSVFVGFLVVILSATRSATIAFVATFLILSCFILYAKKSLKPLGYMVVVSL 240
Query: 246 ILSALYVGSNALEKKGAIEQSRVQNQSFEEDLKRYAKKDADSSIGWRLERWKEALTVLRL 305
+LSALYVGSNAL+K+GAI+QSRVQNQ+FEEDLKRYAKKDADSSIGWRLERWKEALTVLRL
Sbjct: 241 VLSALYVGSNALKKRGAIKQSRVQNQTFEEDLKRYAKKDADSSIGWRLERWKEALTVLRL 300
Query: 306 RPFFGMAASEKCQRLEEILSLSKSYRAKDLILCYERYDNQIIHILATRGIIGFLIWLFFL 365
RPFFGMAASEKCQRLEEILSLSKSYRAKDLILCYERYDNQIIH+LATRGIIGFLIWLFFL
Sbjct: 301 RPFFGMAASEKCQRLEEILSLSKSYRAKDLILCYERYDNQIIHVLATRGIIGFLIWLFFL 360
Query: 366 LVIVKIFWSGIKQNSLISFFILMTLAFYLIFGIGFDPFDFFITGSFFVGMIMMAVFLKKD 425
LVIVKIFWSGIKQNSLISFFIL+TLAFYLIFGIGFDPFDFFITGSFFVGM+MM VFLKKD
Sbjct: 361 LVIVKIFWSGIKQNSLISFFILITLAFYLIFGIGFDPFDFFITGSFFVGMVMMVVFLKKD 420
Query: 426 KSAF 429
KSAF
Sbjct: 421 KSAF 424
>gb|AAL77343.1|AF443846_4 (AF443846) putative O-antigen ligase WaaL [Vibrio cholerae]
Length = 398
Score = 69.3 bits (168), Expect = 8e-11
Identities = 65/276 (23%), Positives = 122/276 (43%), Gaps = 32/276 (11%)
Query: 124 KLNQKILFYSMAVANFINGLLSLVQKIYFNMPRAQGFSTVKEYVVLVSVSILGCYIYALY 183
K+N ++++Y +A+A + GL + ++ N+ R + Y + VS +L C L
Sbjct: 109 KINPQMVYYIIAIAAIVCGLNAFYERYVLNIYRVGIATNSIPYALYVSFLVLSCVYLLLN 168
Query: 184 SHNQKEKLFFTLSVFVGFLVVILSATRSATIAF--VITFLILSCFILYAKKSLKPLGYMV 241
S ++ KL ++ + +I++ R + VI +L+++ ++KP+
Sbjct: 169 SQSKVLKLLASIGGVLSLAAIIMTDVRGVILCLPVVIIYLVIT--------TIKPIWKYY 220
Query: 242 VVS----LILSALYVGSNALEKKGAIEQSRVQNQSFEEDLKRYAKKDADSSIGWRLERWK 297
V S ++LS ++ E IEQ+ + ++ + D SSIG RL+ W
Sbjct: 221 VASILSIILLSGVFYTIFQPEINARIEQT-------QNEIALIKQGDLSSSIGVRLDLWM 273
Query: 298 EALTVLRLRPFFGMAASEKCQRLEEILSLSKSYRAKDLILCYERYDNQIIHILATRGIIG 357
+ ++ P FG+ S L S S NQ + +LA GI+G
Sbjct: 274 HGVEIIAQNPLFGVGDSG--------LQASISKMTNPGAAMQPHLHNQYLDLLARYGIVG 325
Query: 358 FL-IWLFFLLVIVKIFWSGIKQ--NSLISFFILMTL 390
L I+LF L +I + S + N L++ ++M +
Sbjct: 326 TLVIFLFCLALIFNLNNSAFEYIGNPLVNSMLMMLI 361
>gb|AAL77359.1|AF444794_4 (AF444794) putative O-antigen ligase WaaL [Vibrio cholerae]
Length = 403
Score = 68.2 bits (165), Expect = 2e-10
Identities = 84/394 (21%), Positives = 169/394 (42%), Gaps = 50/394 (12%)
Query: 5 RLKAFFSADSVFTLIFALFFLTSFKKPLTQVLLIVLMVFLFFRCYFQASLKETFAINHLK 64
+L+ FF + L+ +F + K L++++ IV++ L ++ ++KE
Sbjct: 10 KLEEFFFLSPLIVLLIFIFNIADTKYILSRLIPIVIIYALI---KYRNAIKENLHSQIRL 66
Query: 65 TMSFKWLTLAFLGVFLSIFPNMFNMHDSQTFRYNLFALNMSLTYACGALCLLFASCLRIK 124
++ L + ++ I + F++ + L SL Y L+F RI
Sbjct: 67 FLACGLLVVVTFSLYHFIRDDEFSLPRT---------LIASLAY------LIFVPWKRI- 110
Query: 125 LNQKILFYSMAVANFINGLLSLVQKIYFNMPRAQGFSTVKEYVVLVSVSILGCYIYALYS 184
N ++++Y +A+A + GL + ++ N+ R + Y + VS +L C L S
Sbjct: 111 -NPQMVYYIIAIAAIVCGLNAFYERYVLNIYRVGIATNPIPYALYVSFLVLSCIYLLLNS 169
Query: 185 HNQKEKLFFTLSVFVGFLVVILSATRSAT--IAFVITFLILSCFILYAKKSLKPLGYMVV 242
++ KL ++ + +I++ R + VI +L+++ L K Y V
Sbjct: 170 QSKVLKLLASIGGVLSLAAIIMTDVRGVILFLPVVIIYLVITTIKLRWK-------YYVA 222
Query: 243 VSL---ILSALYVGSNALEKKGAIEQSRVQNQSFEEDLKRYAKKDADSSIGWRLERWKEA 299
++L +LS ++ + + I Q+ ++++ + D SSIG RL+ W
Sbjct: 223 LTLSVTVLSGVFYATFQSDINARIAQT-------QDEIALIKQGDLSSSIGIRLDLWMHG 275
Query: 300 LTVLRLRPFFGMAASEKCQRLEEILSLSKSYRAKDLILCYERYDNQIIHILATRGIIGFL 359
+ ++ P FG+ S L S S NQ + LA GI+G +
Sbjct: 276 VEIIAQNPLFGVGDSG--------LQGSISKMTNPGAAMQPHLHNQYLDFLARYGIVGTM 327
Query: 360 I-WLFFLLVIVKIFWSGIKQ--NSLISFFILMTL 390
+ +LF L + + + SG + N L++ ++M +
Sbjct: 328 VMFLFCLALFLNLNNSGFEYIGNPLVNSMLMMLI 361
>gb|AAL77352.1|AF444792_4 (AF444792) putative O-antigen ligase WaaL [Vibrio cholerae]
Length = 403
Score = 67.4 bits (163), Expect = 3e-10
Identities = 59/247 (23%), Positives = 108/247 (42%), Gaps = 21/247 (8%)
Query: 125 LNQKILFYSMAVANFINGLLSLVQKIYFNMPRAQGFSTVKEYVVLVSVSILGCYIYALYS 184
+N K+++Y +A+A + GL + ++ N+ R + Y + S +L C L S
Sbjct: 110 INPKLMYYIIAIAAIVCGLNAFYERYVLNIYRVGISTNPIPYALYASFLVLSCVYLLLNS 169
Query: 185 HNQKEKLFFTLSVFVGFLVVILSATRSAT--IAFVITFLILSCFILYAKKSLKPLGYMVV 242
++ KL ++ + +I++ R + VI +L+++ ++KP +
Sbjct: 170 QSKTLKLLASIGGSLSLAAIIMTDVRGVILYLPVVIIYLVIT--------TIKP-RWKYY 220
Query: 243 VSLILSALYVGSNALEKKGAIEQSRVQNQSFEEDLKRYAKKDADSSIGWRLERWKEALTV 302
V+LILS + S A +R+ ++++ + D SSIG RL+ W + +
Sbjct: 221 VALILSVTVLSSVFYATFQADINARIAQT--QDEIALIKQGDLSSSIGIRLDLWMLGVEI 278
Query: 303 LRLRPFFGMAASEKCQRLEEILSLSKSYRAKDLILCYERYDNQIIHILATRGIIGFLIWL 362
+ P FG+ S L S S NQ + +LA GI+G LI L
Sbjct: 279 IAQNPLFGVGDSG--------LQASISKMTNPGAAIQPHLHNQYLDLLARYGIVGTLIIL 330
Query: 363 FFLLVIV 369
F L ++
Sbjct: 331 LFCLALI 337
>ref|NP_299277.1| (NC_002488) conserved hypothetical protein [Xylella fastidiosa
9a5c]
pir||E82611 conserved hypothetical protein XF1995 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF84797.1|AE004019_3 (AE004019) conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 423
Score = 61.6 bits (148), Expect = 2e-08
Identities = 69/287 (24%), Positives = 131/287 (45%), Gaps = 23/287 (8%)
Query: 143 LLSLVQKIYFNMPRAQGFSTVKEYVVLVSVSILGCYIYALYSHNQKEKLFFTLSVFVGFL 202
LL V +I RA+G+ +VL V+ + I +++ ++ L +L +
Sbjct: 142 LLLAVIQILRGETRAEGWVNA---IVLADVT-MALTIMVVFARPKQSWLLPSLVLLACSA 197
Query: 203 VVILSATRSATIAFVITFLILSCFILYAKKSLKPLGYMVVVSLILSALYVGSNALEKKGA 262
V++LS +R +A + L+L+ + +A ++ L ++ L+L G+ ALE
Sbjct: 198 VIVLSGSRGVLLAMAVVLLVLTMTVRWASLRVRLL---LLAGLVLGG---GALALEVPQV 251
Query: 263 IEQSRVQNQSFEEDLKRYAKKDADSSIGWRLERWKEALTVLRLRPFFGMAASEKCQRLEE 322
EQ R+ + D++R D+DSS G RLER + A +P G+ + +
Sbjct: 252 TEQMRLVE--LQADMRRLESGDSDSSTGARLERLQVAYATFLSKPLMGVGIGQ----FDR 305
Query: 323 ILSLSKSYRAKD-LILCYERY-DNQIIHILATRGIIGFLIWLF-----FLLVIVKIFWSG 375
++L R + L+ C+ R+ N + AT+G+ G L L F+L++ G
Sbjct: 306 AMTLLPVCRGDEWLVRCHLRHAHNDLAEWAATQGVPGLLAILAIYGVPFVLLLRLYAAGG 365
Query: 376 IKQNSLISFFILMTLAFYLIFGIGFDPFDFFITGSFFVGMIMMAVFL 422
K + +M +A Y++ G+ F ++ SF+ + + + L
Sbjct: 366 RKSFRGPAATGVMLVAAYMLCGMTQSMFSHQMSTSFYAVAVGVCIGL 412
>ref|NP_418079.1| (NC_000913) O-antigen ligase; lipopolysaccharide core biosynthesis
[Escherichia coli K12]
pir||S47843 rfaL protein - Escherichia coli
gb|AAB18599.1| (U00039) rfaL [Escherichia coli]
gb|AAC76646.1| (AE000440) O-antigen ligase; lipopolysaccharide core biosynthesis
[Escherichia coli K12]
Length = 419
Score = 54.3 bits (129), Expect = 3e-06
Identities = 91/410 (22%), Positives = 171/410 (41%), Gaps = 60/410 (14%)
Query: 25 LTSFK----KPLTQVLLIVLMVFLFFRCYFQ---ASLKETFAIN---------------- 61
LTSFK KP T ++L + + C+F A + TF+I
Sbjct: 2 LTSFKLHSLKPYTLKSSMILEIITYILCFFSMIIAFVDNTFSIKIYNITAIVCLLSLILR 61
Query: 62 ------HLKTMSFKWLTLAFLGVFLSIFPNMFNMHDSQTFRYNLFA-LNMSLTYACGALC 114
++K + L++ +G+ I+ + F + D+ FR + LN + + G+
Sbjct: 62 GRQENYNIKNLILP-LSIFLIGLLDLIWYSAFKV-DNSPFRATYHSYLNTAKIFIFGSFI 119
Query: 115 LLFASCLRIKLNQKILFYSMAVANF-INGLLSLVQKIYFN--MPRAQGFSTVKEYVVLVS 171
+ ++K ++ + Y++ +F I G + I+ N + G +T Y ++
Sbjct: 120 VFLTLTSQLKSKKESVLYTLYSLSFLIAGYAMYINSIHENDRISFGVGTATGAAYSTMLI 179
Query: 172 VSILGCYIYALYSHNQKEKLFFTLSVFVGFLVVILSATRSATIAFVITFLILSCFILYAK 231
+ G I LY+ LF S V + V+ L+ TR+ + F I + ++ I Y
Sbjct: 180 GIVSGVAI--LYTKKNHPFLFLLNSCAVLY-VLALTQTRATLLLFPI--ICVAALIAYYN 234
Query: 232 KSLKPLGYMVVVSLILSALYVGSNALEKKGAIEQSRVQNQSFE--EDLKRYAKKDADSSI 289
KS K +V+ + + A V I +QN+ E DL Y ++ +S+
Sbjct: 235 KSPKKFTSSIVLLIAILASIV---------IIFNKPIQNRYNEALNDLNSYTNANSVTSL 285
Query: 290 GWRLERWKEALTVLRLRPFFGMAASEKCQRLEEILSLSKSYRAKDLILCYERYDNQIIHI 349
G RL ++ L + PF +A + + + +++ R L N+II
Sbjct: 286 GARLAMYEIGLNIFIKSPFSFRSAESRAESMNLLVAEHNRLRGA-LEFSNVHLHNEIIEA 344
Query: 350 LATRGIIGFLIWLFFLLVIVKIFWSGIKQNSLISFFILMTLAFYLIFGIG 399
+ +G++G LF + +F+ K+ +L +++TL I GIG
Sbjct: 345 GSLKGLMGIFSTLF---LYFSLFYIAYKKRAL--GLLILTLG---IVGIG 386
>gb|AAL76927.1|AF443424_1 (AF443424) putative O-antigen ligase WaaL [Vibrio cholerae]
gb|AAL76928.1|AF443425_1 (AF443425) putative O-antigen ligase WaaL [Vibrio cholerae]
Length = 399
Score = 53.9 bits (128), Expect = 4e-06
Identities = 72/292 (24%), Positives = 115/292 (38%), Gaps = 17/292 (5%)
Query: 133 SMAVANFINGLLSLVQKIYFNMPRAQGFSTVKEYVVLVSVSILGCYIYALYSHNQKEKLF 192
S +A+F ++ Q NMPR GF + L + L + L K +
Sbjct: 111 STILASFGALAFAVYQFFILNMPRVDGFLFSINFGYLAAA--LAIISFGLSFTQTHFKHY 168
Query: 193 FTLSVFVGFLVVILSATRSATIAFVITFLILSCFILYAKKSLKPLGYMVVVSLILSALYV 252
F LS + IL+ TR A + + F++ + K + L + +V L+LSA Y
Sbjct: 169 FYLSALAATVATILTLTRGAILTLPLVFMLFFIVNVRKLKFKQTLFFTLVGFLLLSASYQ 228
Query: 253 GSNALEKKGAIEQSRVQNQSFEEDLKRYAKKDADSSIGWRLERWKEALTVLRLRPFFGMA 312
S + Q RV FE A +S G RL+ W AL + P G
Sbjct: 229 ISPRI-------QERVDFTIFEISGIASNNVHAAASSGGRLQLWYAALEAFKRNPILGTT 281
Query: 313 ASEKCQRLEEILSLSKSYRAKDLILCYER--YDNQIIHILATRGIIGFLIWLFFLLVIVK 370
SE R + L K + + R +Q +A+ G G L L++
Sbjct: 282 YSE---RESLNIELFKEGKVDEWTSTVPRGHAHSQYFEAIASNGTFGILAIFAMLVLPFG 338
Query: 371 IFWSGI-KQNSLISFFILMTLAFYLIFGIGFDPFDFFITGSFFVGMIMMAVF 421
+F + K S IS + + ++IF + P + G+F+ M+A+F
Sbjct: 339 LFLNDYRKTGSPISQTGYLFVFGFIIFCLTEAPLQANLIGTFY--GFMVAIF 388
>ref|NP_639090.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM43002.1| (AE012495) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 429
Score = 53.1 bits (126), Expect = 6e-06
Identities = 64/301 (21%), Positives = 129/301 (42%), Gaps = 31/301 (10%)
Query: 127 QKILFYSMAVANFINGLLSLVQKIYFNMPRAQGFSTVKEYVVLVSVSILGCYIYALYSHN 186
+++ + A+A +L + ++ RA+G++ +V ++++ + A++
Sbjct: 123 RQVWLWRGALAGVFAAMLVAILQVMNGAERAEGWTNA---IVFADIALM-LLVVAIFCRP 178
Query: 187 QKEKLFFTLSVFVGFLVVILSATRSATIAFVITFLILSCFILYAKKSLKPL----GYMVV 242
+ + + V++LS +R ++ ++T +L + ++ L G +V
Sbjct: 179 NGQVRWLLGAAVAAVAVIVLSGSRGVWLSLLVTLGVLVWGAPWQSARMRLLAFVGGAVVC 238
Query: 243 VSLILSALYVGSNALEKKGAIEQSRVQNQSFEEDLKRYAKKDADSSIGWRLERWKEALTV 302
V L+LS G EQ R+ + D +RY DADSS G R+ER A
Sbjct: 239 VGLVLSV----------PGLTEQLRIGE--LQSDFQRYEVGDADSSAGARIERLHVAWDT 286
Query: 303 LRLRPFFGMAASEKCQRLEEI-LSLSKSYRAKDLILCYERY-DNQIIHILATRGIIGFLI 360
L+ P G+ + E+ L ++ L+ C+ + N + AT+GI G L+
Sbjct: 287 LQAHPLTGVGVGRFDDAMRELPLCAGDTW----LLRCHLGHAHNDLAEWGATQGIPGLLL 342
Query: 361 WLFFLLVIVKIF-----WSGIKQNSLISFFILMTLAFYLIFGIGFDPFDFFITGSFFVGM 415
+ V + +F SG +Q + +M + Y + G+ F ++ SF+ M
Sbjct: 343 LIAVYGVPLWMFVRLHRRSGQRQFRGPAAAGVMIVISYALCGLTQSMFAHQVSASFYAAM 402
Query: 416 I 416
+
Sbjct: 403 V 403
>gb|AAC69671.1| (AF019746) lipid A-core:surface polymer ligase WaaL [Escherichia
coli]
Length = 417
Score = 52.8 bits (125), Expect = 8e-06
Identities = 82/384 (21%), Positives = 162/384 (41%), Gaps = 33/384 (8%)
Query: 49 YFQASLKETFAINHLKTMSFKWLTLAFLGVFLSIFPNMFNMHDS---QTFRYNLFALNMS 105
YF A+ K+T N + +++L LG+ I+ + + + S +R + ++
Sbjct: 48 YFLATPKKTITNNPTLLI---FISLCLLGIVNIIWYSHYKVSGSVYTNAYRGPMETGKIA 104
Query: 106 LTYACGALCLLFASCLR--IKLNQKILFYSMAVANFINGLLSLVQKIYFNMPR---AQGF 160
L A L L + +R IK + ILF S+A + ++ Q Y N+ R +
Sbjct: 105 LCSAFIFLVLFAKNEMRTKIKFGKLILFASLAT-QLLFFAHAMWQHFYLNVDRVALSASH 163
Query: 161 STVKEYVVLVSVSILGCYIYALYSHNQKEKLFFTLSVFVGFLVVILSATRSATIAFVITF 220
+T Y++L S+L I L S + + +T++ + VI++ TR+A + F
Sbjct: 164 ATTAGYIILFP-SLLAS-ILILKSDFRHKTTLYTINFMLSLCAVIVTETRAAILVFPFFA 221
Query: 221 LILSCFILYAKKSLKPLGYMVVVSLILSALYVGSNALEKKGAIEQSRVQNQSFEEDLKRY 280
LIL Y K + Y + +L+ ++ + L ++ DL Y
Sbjct: 222 LILIVMDSYINKRINYKLYCFITIALLAGVFSFKDTL---------LMRMNDLNNDLVNY 272
Query: 281 AKKDADSSIGWRLERWKEALTVLRLRPFFGMAASEKCQRLEEILSLSKSYRAKDLILCYE 340
+ + +S+G RL ++ L+ G + ++ +++ E L + + L
Sbjct: 273 SHDNTRTSVGARLAMYEVG---LKTYSPIGQSLEKRAEKIHE-LEEKEPRLSGALPYVDS 328
Query: 341 RYDNQIIHILATRGIIGFLIWLFFLLVIVKIFWSGIKQNSLISFFILMTLAFYLIFGIG- 399
N +I L+TRGI G ++ + I+ K+ +IL+ L L+ G+
Sbjct: 329 HLHNDLIDTLSTRGIPGVVLTILAFSAILIYALRTAKEP-----YILILLFSLLVVGLSD 383
Query: 400 FDPFDFFITGSFFVGMIMMAVFLK 423
F + + F+ +I++ + K
Sbjct: 384 VILFSKPVPTAVFITIILLCAYFK 407
>ref|NP_439035.1| (NC_000907) H. influenzae predicted coding region HI0874
[Haemophilus influenzae Rd]
sp|P44067|Y874_HAEIN Hypothetical protein HI0874
pir||D64015 hypothetical protein HI0874 - Haemophilus influenzae (strain Rd
KW20)
gb|AAC22538.1| (U32769) H. influenzae predicted coding region HI0874 [Haemophilus
influenzae Rd]
Length = 399
Score = 52.4 bits (124), Expect = 1e-05
Identities = 74/371 (19%), Positives = 145/371 (38%), Gaps = 35/371 (9%)
Query: 18 LIFALFFLTSFKKPLTQVLLIVLMVFLFFRCYFQASLKETFAINHLKTM-SFKWLTLAFL 76
L+ +LFFLT P +++ + + K +F+ K + SF + FL
Sbjct: 13 LLVSLFFLTILIIPKGYNYAPIILSAIGLIYFIPLKKKLSFSSEDKKLIFSFLFYFFTFL 72
Query: 77 GVFLSIFPNMFNMHDSQTFRYNLFALNMSLTYACGALCLLFASCLRIKLNQKILFYSMAV 136
LSI N + + N S L LLF + + +K + Y++
Sbjct: 73 ---LSIIINKDGIREID---------NPSRLLLFIPLLLLFKN---FPIKRKTILYAIPS 117
Query: 137 ANFINGLLSLVQKIYFN----MPRAQGFSTVKEYVVLVSVSILGCYIYALYSHNQKEKLF 192
+ I G ++L QK P + L + SI+ ++ K LF
Sbjct: 118 SALITGCVALFQKFALGYEKPFPETMHIQMGNIAISLATFSIV-ITLHFFIKKQYKSTLF 176
Query: 193 FTLSVFVGFLVVILSATRSATIAF-VITFLILSCFILYAKKSLKPLGYMVVVSLILSALY 251
+++ + + LS R I V+ +IL + + K L + +++ +
Sbjct: 177 GFVAIILAIMTSALSGARGGWIGLPVVVGIILFLYKEFINKKL--------IITLIAIIT 228
Query: 252 VGSNALEKKGAIEQSRVQNQSFEEDLKRYAKKDADSSIGWRLERWKEALTVLRLRPFFGM 311
+G AL + N + + + K + ++S+G R + W+ AL ++ P FG
Sbjct: 229 IGLTALITSPKFGIEKRYNAAKSDIVSYLEKNNRNTSLGARFDMWENALIAIKEAPIFGH 288
Query: 312 AASEKCQ-RLEEILSLSKSYRAKDLILCYERYDNQIIHILATRGIIGFLIWLFFLLVIVK 370
+ + R +++ KS + L + NQ + RG++GF+ + +L +
Sbjct: 289 GSDGYDEFRHKQV----KSKQMAKTTLNFGSLHNQYLESWVKRGLVGFIALILIILTPIF 344
Query: 371 IFWSGIKQNSL 381
F + ++L
Sbjct: 345 YFIKNLNTHNL 355
>ref|NP_229894.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||G82349 conserved hypothetical protein VC0237 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF93413.1| (AE004112) conserved hypothetical protein [Vibrio cholerae]
gb|AAL76923.1|AF443420_1 (AF443420) putative O-antigen ligase WaaL [Vibrio cholerae]
gb|AAL76926.1|AF443423_1 (AF443423) putative O-antigen ligase WaaL [Vibrio cholerae]
Length = 399
Score = 52.0 bits (123), Expect = 1e-05
Identities = 68/292 (23%), Positives = 115/292 (39%), Gaps = 17/292 (5%)
Query: 133 SMAVANFINGLLSLVQKIYFNMPRAQGFSTVKEYVVLVSVSILGCYIYALYSHNQKEKLF 192
S +A+F + Q NMPR GF + L + L + L + K +
Sbjct: 111 STILASFGALAFAFYQFFILNMPRVDGFLFSINFGYLAAA--LAILSFGLSFTQTRFKYY 168
Query: 193 FTLSVFVGFLVVILSATRSATIAFVITFLILSCFILYAKKSLKPLGYMVVVSLILSALYV 252
LSV + IL+ TR A + + F++ + K + L + ++ L++S Y
Sbjct: 169 LYLSVVAATVATILTLTRGAILTLLFVFILFFIVNVRKIKFKQTLVFTLISFLLVSVSYQ 228
Query: 253 GSNALEKKGAIEQSRVQNQSFEEDLKRYAKKDADSSIGWRLERWKEALTVLRLRPFFGMA 312
S + Q RV FE A +S G RL+ W A+ + P +G
Sbjct: 229 FSPRI-------QERVDFTIFEISSIASNNIHAAASSGGRLQLWYAAVEAFKHNPIWGTT 281
Query: 313 ASEKCQRLEEILSLSKSYRAKDLILCYER--YDNQIIHILATRGIIGFLIWLFFLLVIVK 370
SE R + L K + + R +Q +A+ G +G L L++
Sbjct: 282 YSE---RESLNIELFKEGKVDEWTSTVPRGHAHSQYFEAIASNGTLGILAIFAMLILPFG 338
Query: 371 IFWSGI-KQNSLISFFILMTLAFYLIFGIGFDPFDFFITGSFFVGMIMMAVF 421
+F + K S IS + ++IF + P + G+F+ M+A+F
Sbjct: 339 VFLNDYRKTGSPISQTGYLFAFGFIIFCLTEAPLQANLIGTFY--GFMVAIF 388
>gb|AAL76925.1|AF443422_1 (AF443422) putative O-antigen ligase WaaL [Vibrio cholerae]
Length = 399
Score = 52.0 bits (123), Expect = 1e-05
Identities = 68/292 (23%), Positives = 115/292 (39%), Gaps = 17/292 (5%)
Query: 133 SMAVANFINGLLSLVQKIYFNMPRAQGFSTVKEYVVLVSVSILGCYIYALYSHNQKEKLF 192
S +A+F + Q NMPR GF + L + L + L + K +
Sbjct: 111 STILASFGALAFAFYQFFILNMPRVDGFLFSINFGYLAAA--LAILSFGLSFTQTRFKYY 168
Query: 193 FTLSVFVGFLVVILSATRSATIAFVITFLILSCFILYAKKSLKPLGYMVVVSLILSALYV 252
LSV + IL+ TR A + + F++ + K + L + ++ L++S Y
Sbjct: 169 LYLSVVAATVATILTLTRGAILTLLFVFILFFIVNVRKIKFKQTLVFTLISFLLVSVSYQ 228
Query: 253 GSNALEKKGAIEQSRVQNQSFEEDLKRYAKKDADSSIGWRLERWKEALTVLRLRPFFGMA 312
S + Q RV FE A +S G RL+ W A+ + P +G
Sbjct: 229 FSPRI-------QERVDFTIFEISSIASNNIHAAASSGGRLQLWYAAVEAFKHNPIWGTT 281
Query: 313 ASEKCQRLEEILSLSKSYRAKDLILCYER--YDNQIIHILATRGIIGFLIWLFFLLVIVK 370
SE R + L K + + R +Q +A+ G +G L L++
Sbjct: 282 YSE---RESLNIELFKEGKVDEWTSTVPRGHAHSQYFEAIASNGTLGILAIFAMLILPFG 338
Query: 371 IFWSGI-KQNSLISFFILMTLAFYLIFGIGFDPFDFFITGSFFVGMIMMAVF 421
+F + K S IS + ++IF + P + G+F+ M+A+F
Sbjct: 339 VFLNDYRKTGSPISQTGYLFAFGFIIFCLTEAPLQANLIGTFY--GFMVAIF 388
>gb|AAL76924.1|AF443421_1 (AF443421) putative O-antigen ligase WaaL [Vibrio cholerae]
Length = 399
Score = 51.6 bits (122), Expect = 2e-05
Identities = 67/292 (22%), Positives = 116/292 (38%), Gaps = 17/292 (5%)
Query: 133 SMAVANFINGLLSLVQKIYFNMPRAQGFSTVKEYVVLVSVSILGCYIYALYSHNQKEKLF 192
S +A+F + Q NMPR GF + L + L + L + K +
Sbjct: 111 STILASFGALAFAFYQFFILNMPRVDGFLFSINFGYLAAA--LAILSFGLSFTQTRFKYY 168
Query: 193 FTLSVFVGFLVVILSATRSATIAFVITFLILSCFILYAKKSLKPLGYMVVVSLILSALYV 252
LSV + IL+ TR A + + F++ + K + L + ++ L++S Y
Sbjct: 169 LYLSVVAATVATILTLTRGAILTLLFVFILFFIVNVRKIKFKQTLVFTLISFLLVSVSYQ 228
Query: 253 GSNALEKKGAIEQSRVQNQSFEEDLKRYAKKDADSSIGWRLERWKEALTVLRLRPFFGMA 312
S + Q RV FE A +S G RL+ W A+ + P +G
Sbjct: 229 FSPRI-------QERVDFTIFEISSIASNNIHAAASSGGRLQLWYAAVEAFKHNPIWGTT 281
Query: 313 ASEKCQRLEEILSLSKSYRAKDLILCYER--YDNQIIHILATRGIIGFLIWLFFLLVIVK 370
SE R + L K + + R +Q +A+ G +G L L++
Sbjct: 282 YSE---RESLNIELFKEGKVDEWTSTVPRGHAHSQYFEAIASNGTLGILAIFAMLILPFG 338
Query: 371 IFWSGIKQ-NSLISFFILMTLAFYLIFGIGFDPFDFFITGSFFVGMIMMAVF 421
+F + ++ S IS + ++IF + P + G+F+ M+A+F
Sbjct: 339 VFLNDYRKIGSPISQTGYLFAFGFIIFCLTEAPLQANLIGTFY--GFMVAIF 388
>gb|AAL77337.1|AF443845_2 (AF443845) putative O-antigen ligase WaaL [Vibrio cholerae]
Length = 399
Score = 49.3 bits (116), Expect = 9e-05
Identities = 67/292 (22%), Positives = 114/292 (38%), Gaps = 17/292 (5%)
Query: 133 SMAVANFINGLLSLVQKIYFNMPRAQGFSTVKEYVVLVSVSILGCYIYALYSHNQKEKLF 192
S +A+F ++ Q NMPR GF + L + L + L + K +
Sbjct: 111 STILASFGALAFAVYQFFILNMPRVDGFLFSINFGYLAAA--LAIISFGLSFTQTQLKHY 168
Query: 193 FTLSVFVGFLVVILSATRSATIAFVITFLILSCFILYAKKSLKPLGYMVVVSLILSALYV 252
LS + L+ TR A + + F++ + K + L + +V L+LSA Y
Sbjct: 169 LYLSAIAATVATTLTLTRGAILTLPLVFMLFFIVNVRKLKFKQTLFFTLVGILLLSASYQ 228
Query: 253 GSNALEKKGAIEQSRVQNQSFEEDLKRYAKKDADSSIGWRLERWKEALTVLRLRPFFGMA 312
S + Q RV FE A +S G RL+ W AL + G
Sbjct: 229 ISPRI-------QERVDFTIFEISSIASNNVHAAASSGGRLQLWYAALEAFKRNQILGTT 281
Query: 313 ASEKCQRLEEILSLSKSYRAKDLILCYER--YDNQIIHILATRGIIGFLIWLFFLLVIVK 370
SE R + L K + + R +Q +A+ G +G L L++
Sbjct: 282 YSE---RESLNIELFKEGKVDEWTSTVPRGHAHSQYFEAIASNGSLGILAIFAMLILPFA 338
Query: 371 IFWSGIKQNSL-ISFFILMTLAFYLIFGIGFDPFDFFITGSFFVGMIMMAVF 421
+F + ++ IS + + ++IF + P + G+F+ M+A+F
Sbjct: 339 VFLNDYRKTGCPISQTGFLFIFGFIIFCLTEAPLQANLIGTFY--GFMVAIF 388
>ref|NP_604135.1| (NC_003454) Hypothetical protein [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gb|AAL95434.1| (AE010629) Hypothetical protein [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 365
Score = 48.9 bits (115), Expect = 1e-04
Identities = 50/229 (21%), Positives = 103/229 (44%), Gaps = 29/229 (12%)
Query: 178 YIYALYSHNQKEKLFFTLSVFVGFLVVILSATRSATIA-FVITFLILSCFILYAKKSLKP 236
Y + S + K+ +F + + F+ + S +R+ ++ F++ FL L + KKS+K
Sbjct: 127 YTFEKISEDFKKYIFLLSASILPFIALGKSGSRAGALSLFLVIFLYLIFKVFKEKKSIKF 186
Query: 237 LGYMVVVSLILSALYVGSNALEKKGAIEQSRVQNQSFEEDLKRYAKKDADSSIGWRLERW 296
+ + ++ ++L+ L++ EK Q+ +N S E+ R+ W
Sbjct: 187 VSVITII-ILLTGLFLPKEYKEKLKTSFQT-TENISNED----------------RIVMW 228
Query: 297 KEALTVLRLRPFFGMAASEK-----CQRLEEILSLSKSYRAKDLIL-CYERYDNQIIHIL 350
K + + + P FG+ + +K Q+ E + R + + + + N I
Sbjct: 229 KAGIEIFKENPIFGIGSYKKGIYPHVQKYVEENVNDEQLRGEFINRDRFAKLHNMYIDFF 288
Query: 351 ATRGIIGFLIWLF-FLLVIVKIFWSGIKQNSLISFFILMTLAFYLIFGI 398
GI+G L +F F+L+ + F S + S+ +FF ++ FY +G+
Sbjct: 289 VQNGILGLLYLVFLFVLIPFEFFKSEKNKESIAAFF---SMIFYCSYGL 334
>ref|NP_520325.1| (NC_003295) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
emb|CAD15911.1| (AL646068) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
Length = 435
Score = 48.5 bits (114), Expect = 1e-04
Identities = 54/229 (23%), Positives = 100/229 (43%), Gaps = 24/229 (10%)
Query: 197 VFVGFLVVILSATRSATIAFVITFLILSCFILYAKKSLKPLGYMVVVSLI----LSALYV 252
+ G + +L+ +R +A + F++L + A+ KP + V+V + + LY
Sbjct: 198 LLAGLVASLLTGSRGGWVA--LPFILL--LVAVARGRDKPARWRVLVPAVAVLGVVVLYA 253
Query: 253 GSNALEKKGAIEQSRVQNQSFEEDLKRYAKKDADSSIGWRLERWKEALTVLRLRPFFGMA 312
S + ++ I V DL +YA+ D+SIG RL+ ++ AL ++ P FG+
Sbjct: 254 VSGTIHER--IHMVWV-------DLAQYAQGQKDTSIGIRLQIYQAALMLIPKHPIFGLG 304
Query: 313 ASEKCQRLEEILSLSKSYRAKDLILCYERYDNQIIHILATRGIIGFLIWLFFLLVIVKIF 372
L+ ++ + A L NQ++ A G++G L + LV +
Sbjct: 305 PGGFADSLQALVDAGR-MSATAAQLGRGEAHNQLLAYTANFGLVGGLSIVAIHLVPGLLC 363
Query: 373 WSGIK-----QNSLISFFILMTLAFYLIFGIGFDPFDFFITGSFFVGMI 416
W +K + LAF+ +FG+ + F +T SF+ +I
Sbjct: 364 WRCLKAAAAPMRRAALMGAVFALAFF-VFGLTVEIFTLKMTASFYAAVI 411
>ref|NP_644103.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM38639.1| (AE012028) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 425
Score = 47.0 bits (110), Expect = 4e-04
Identities = 60/294 (20%), Positives = 122/294 (41%), Gaps = 21/294 (7%)
Query: 135 AVANFINGLLSLVQKIYFNMPRAQGFSTVKEYVVLVSVSILGCYIYALYSHNQKEKLFFT 194
A+A +L + ++ RA+GF+ +V ++++ + ++ +
Sbjct: 131 ALAGVFAAMLIALLQVMNGADRAEGFTNA---IVFADIALM-LLVVVVFCRPPGNVRWLV 186
Query: 195 LSVFVGFLVVILSATRSATIAFVITFLILSCFILYAKKSLKPLGYMVVVSLILSALYVGS 254
+ V++LS +R +A + T +L + ++ +++ I SA+
Sbjct: 187 GAAVATVAVIVLSGSRGVWLALLATLGVLIWGAPWHSTRMR------LLTFIGSAVLAMG 240
Query: 255 NALEKKGAIEQSRVQNQSFEEDLKRYAKKDADSSIGWRLERWKEALTVLRLRPFFGMAAS 314
L G +Q R+ + DL+RY D+DSS G R+ER A + P G+
Sbjct: 241 VVLSVPGLTDQMRLGE--LQSDLQRYEVGDSDSSAGARIERLHVAWDTVTAHPLTGVGVG 298
Query: 315 EKCQRLEEILSLSKSYRAKDLILCYERY-DNQIIHILATRGIIGFLIWLFFLLVIVKIF- 372
++++ + + L+ C+ + N + AT+G+ G L+ L V + +F
Sbjct: 299 RFDDAMQDLPACAAD---PALVRCHLGHAHNDLAEWGATQGVPGLLLLLAVYGVPLWLFV 355
Query: 373 ----WSGIKQNSLISFFILMTLAFYLIFGIGFDPFDFFITGSFFVGMIMMAVFL 422
SG KQ + +M + Y + G+ F + SF+ + + V L
Sbjct: 356 RLHRCSGQKQFRGPAAAGVMIVISYALCGLTQSMFAHQVAASFYTATLGVLVGL 409
>gb|AAC69682.1| (AF019747) lipid A-core:surface polymer ligase WaaL [Escherichia
coli]
Length = 417
Score = 46.2 bits (108), Expect = 7e-04
Identities = 75/382 (19%), Positives = 155/382 (39%), Gaps = 38/382 (9%)
Query: 61 NHLKTMSFKWLTLAFLGVFLSIFPNMFNMHDSQTFRYNLFALNMSLTYACGALCLLFASC 120
N+ K + L L LG I+ + D L +L L S
Sbjct: 56 NYNKNVIILILGLLLLGAMNLIWYEFYKTEDVVYRNAYRGYLESGKLLVFSSLTFLLLSK 115
Query: 121 LRIKLNQKILFYSMAVANFINGLLSLVQKIYFNMPRA-----------QGFSTVKEYVVL 169
+ + N+K+ F S + I + Q IY + R G +T+ YV+
Sbjct: 116 NKFRQNEKLHFISAILVQIIMLCRAYYQGIYLHADRIPLSAMNGNIGQMGAATIAAYVIT 175
Query: 170 VSVSILGCYIYALYSHNQKEKLFFTLSVFVGFLVVILSATRSATIAFVITFLILSCFILY 229
+ ++ ++ K LF+ + + F V+++ TR+A F + +++
Sbjct: 176 FT-TLYSSIVFIKMKSKYKWFLFYA-NFALSFAAVMMTGTRAAIFTFPLMIMVILFLQHR 233
Query: 230 AKKSLKPLGYMVVVSLILSALYVGSNALEKKGAIEQSRVQNQSFEEDLKRYA-KKDADSS 288
+K G V L+L+ + + ++++ S + D+ YA K ++ SS
Sbjct: 234 DQKVFLFKGLSGVFILLLACGLIFNKEIDRR---------INSLKADVISYATKNNSQSS 284
Query: 289 IGWRLERWKEALTVLRLRP--FFGMAASEKCQRLEEILSLSKSYRAKDLILCYERYDNQI 346
+G R + + P F + ++ ++++ + + + Y L L + N+I
Sbjct: 285 VGARFAMVNAGI---KGSPDGFNWQSLEQRAEKIKALSAENNIYSGALLFLDVHMH-NEI 340
Query: 347 IHILATRGIIGFLIWLFFLLVIVKIFWSGIKQNSLISFFILMTLAFYLIFGIGFDPFDFF 406
+ L+T+G IG L+ + F + ++ + I++ + +L+ A ++FGI D
Sbjct: 341 VESLSTKGKIGLLVLIMFYVAMI---YYCIREK---KYILLVFPASIMLFGIS-DVITHA 393
Query: 407 --ITGSFFVGMIMMAVFLKKDK 426
I S+ V + + FL K++
Sbjct: 394 KPIPASWIVCLFLSISFLSKNE 415
>sp|P27243|RFAL_ECOLI O-antigen ligase
pir||D42981 RfaL - Escherichia coli
gb|AAA24524.1| (M95398) rfaL [Escherichia coli]
Length = 419
Score = 44.3 bits (103), Expect = 0.003
Identities = 86/410 (20%), Positives = 166/410 (39%), Gaps = 60/410 (14%)
Query: 25 LTSFK----KPLTQVLLIVLMVFLFFRCYFQ---ASLKETFAIN---------------- 61
LTSFK KP T ++L + + C+F A + TF+I
Sbjct: 2 LTSFKLHSLKPYTLKSSMILEIITYILCFFSMIIAFVDNTFSIKIYNITAIVCLLSLILR 61
Query: 62 ------HLKTMSFKWLTLAFLGVFLSIFPNMFNMHDSQTFRYNLFA-LNMSLTYACGALC 114
++K + L++ +G+ I+ + F + D+ FR + LN + + G+
Sbjct: 62 GRQENYNIKNLILP-LSIFLIGLLDLIWYSAFKV-DNSPFRATYHSYLNTAKIFIFGSFI 119
Query: 115 LLFASCLRIKLNQKILFYSMAVANF-INGLLSLVQKIYFN--MPRAQGFSTVKEYVVLVS 171
+ ++K ++ + Y++ +F I G + I+ N + G +T Y ++
Sbjct: 120 VFLTLTSQLKSKKESVLYTLYSLSFLIAGYAMYINSIHENDRISFGVGTATGAAYSTMLI 179
Query: 172 VSILGCYIYALYSHNQKEKLFFTLSVFVGFLVVILSATRSATIAFVITFLILSCFILYAK 231
+ G I LY+ + F L+ G L + +S + + ++ I Y
Sbjct: 180 GIVSGVAI--LYT-KKNHPFLFLLNSCAGTLCSGANTNQSNPTP--VPYNCVAALIAYYN 234
Query: 232 KSLKPLGYMVVVSLILSALYVGSNALEKKGAIEQSRVQNQSFE--EDLKRYAKKDADSSI 289
KS K +V+ + + A V I +QN+ E DL Y ++ +S+
Sbjct: 235 KSPKKFTSSIVLLIAILASIV---------IIFNKPIQNRYNEALNDLNSYTNANSVTSL 285
Query: 290 GWRLERWKEALTVLRLRPFFGMAASEKCQRLEEILSLSKSYRAKDLILCYERYDNQIIHI 349
G RL ++ L + PF +A + + + +++ R L N+II
Sbjct: 286 GARLAMYEIGLNIFIKSPFSFTSAESRAESMNLLVAEHNRLRGA-LEFSNVHLHNEIIER 344
Query: 350 LATRGIIGFLIWLFFLLVIVKIFWSGIKQNSLISFFILMTLAFYLIFGIG 399
+ +G++G LF + +F+ K+ +L +++TL I GIG
Sbjct: 345 GSLKGLMGIFSTLF---LYFSLFYIAYKKRAL--GLLILTLG---IVGIG 386
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.334 0.145 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 230,116,322
Number of Sequences: 1026957
Number of extensions: 8767010
Number of successful extensions: 50841
Number of sequences better than 1.0e-02: 21
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 50809
Number of HSP's gapped (non-prelim): 24
length of query: 429
length of database: 324,149,939
effective HSP length: 124
effective length of query: 305
effective length of database: 196,807,271
effective search space: 60026217655
effective search space used: 60026217655
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 99 (42.7 bits)