BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645656|ref|NP_207832.1| hypothetical protein
[Helicobacter pylori 26695]
(348 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207832.1| (NC_000915) hypothetical protein [Helicoba... 714 0.0
ref|NP_223101.1| (NC_000921) putative [Helicobacter pylori ... 687 0.0
ref|NP_282035.1| (NC_002163) hypothetical protein Cj0881c [... 262 4e-69
emb|CAA70008.1| (Y08762) hypothetical protein [Helicobacter... 119 5e-26
gb|AAD27690.1|AF125197_5 (AF125197) hypothetical protein [H... 114 2e-24
ref|NP_389702.1| (NC_000964) yngD [Bacillus subtilis] >gi|7... 63 6e-09
ref|NP_146981.1| (NC_000854) hypothetical protein [Aeropyru... 44 0.002
>ref|NP_207832.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||B64650 hypothetical protein HP1042 - Helicobacter pylori (strain 26695)
gb|AAD08096.1| (AE000612) H. pylori predicted coding region HP1042 [Helicobacter
pylori 26695]
Length = 348
Score = 714 bits (1842), Expect = 0.0
Identities = 348/348 (100%), Positives = 348/348 (100%)
Query: 1 MMQVYHLSHIDLDGYACQLVSKQFFKNIQCYNANYGREVSARIYEILNAIAQSKESEFLI 60
MMQVYHLSHIDLDGYACQLVSKQFFKNIQCYNANYGREVSARIYEILNAIAQSKESEFLI
Sbjct: 1 MMQVYHLSHIDLDGYACQLVSKQFFKNIQCYNANYGREVSARIYEILNAIAQSKESEFLI 60
Query: 61 LVSDLNLNLNEAEYLQDKIQEHRLQNKNIQIQLLDHHISGKEVAESFHWYFLDINRCATK 120
LVSDLNLNLNEAEYLQDKIQEHRLQNKNIQIQLLDHHISGKEVAESFHWYFLDINRCATK
Sbjct: 61 LVSDLNLNLNEAEYLQDKIQEHRLQNKNIQIQLLDHHISGKEVAESFHWYFLDINRCATK 120
Query: 121 IVYEFLKKHYAILEPKNTTWLEPLVEMVNSVDIWDTQGYGFELGKVCMRMINQSSELNRF 180
IVYEFLKKHYAILEPKNTTWLEPLVEMVNSVDIWDTQGYGFELGKVCMRMINQSSELNRF
Sbjct: 121 IVYEFLKKHYAILEPKNTTWLEPLVEMVNSVDIWDTQGYGFELGKVCMRMINQSSELNRF 180
Query: 181 MFDDENRNYKLKLLEEVKNYLFLENAPVAYDNDLFKLKKIALGGDPDAETMDNISSNAQT 240
MFDDENRNYKLKLLEEVKNYLFLENAPVAYDNDLFKLKKIALGGDPDAETMDNISSNAQT
Sbjct: 181 MFDDENRNYKLKLLEEVKNYLFLENAPVAYDNDLFKLKKIALGGDPDAETMDNISSNAQT 240
Query: 241 HLLSLKKHDCSVYYQDKKGFLSYSMGGISVLANLFLTQNPDFDFYMDVNAKGNVSLRANG 300
HLLSLKKHDCSVYYQDKKGFLSYSMGGISVLANLFLTQNPDFDFYMDVNAKGNVSLRANG
Sbjct: 241 HLLSLKKHDCSVYYQDKKGFLSYSMGGISVLANLFLTQNPDFDFYMDVNAKGNVSLRANG 300
Query: 301 NCDVCELSQMCFNGGGHRNASGGKIDGFRESFNYRDIKEQIEEIFNNA 348
NCDVCELSQMCFNGGGHRNASGGKIDGFRESFNYRDIKEQIEEIFNNA
Sbjct: 301 NCDVCELSQMCFNGGGHRNASGGKIDGFRESFNYRDIKEQIEEIFNNA 348
>ref|NP_223101.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71937 hypothetical protein jhp0382 - Helicobacter pylori (strain J99)
gb|AAD05965.1| (AE001473) putative [Helicobacter pylori J99]
Length = 347
Score = 687 bits (1772), Expect = 0.0
Identities = 333/347 (95%), Positives = 340/347 (97%)
Query: 2 MQVYHLSHIDLDGYACQLVSKQFFKNIQCYNANYGREVSARIYEILNAIAQSKESEFLIL 61
MQVYHLSHIDLDGYACQLVSKQFFKNIQCYNANYGREVSARIYEILNAIAQSKESEFLIL
Sbjct: 1 MQVYHLSHIDLDGYACQLVSKQFFKNIQCYNANYGREVSARIYEILNAIAQSKESEFLIL 60
Query: 62 VSDLNLNLNEAEYLQDKIQEHRLQNKNIQIQLLDHHISGKEVAESFHWYFLDINRCATKI 121
VSDLNLNLNEAEYLQDKIQEHRLQNK+IQIQLLDHHISGKEVAESFHWYFLD NRCATKI
Sbjct: 61 VSDLNLNLNEAEYLQDKIQEHRLQNKDIQIQLLDHHISGKEVAESFHWYFLDTNRCATKI 120
Query: 122 VYEFLKKHYAILEPKNTTWLEPLVEMVNSVDIWDTQGYGFELGKVCMRMINQSSELNRFM 181
VYEFLKK+YAILE KNT WLEPLVEMVNSVDIWDTQGYGFELGKVCMRMI QSSELNRFM
Sbjct: 121 VYEFLKKYYAILESKNTLWLEPLVEMVNSVDIWDTQGYGFELGKVCMRMITQSSELNRFM 180
Query: 182 FDDENRNYKLKLLEEVKNYLFLENAPVAYDNDLFKLKKIALGGDPDAETMDNISSNAQTH 241
FDDENRNYKLKLLEEVKNYLFLENAPVAYDNDLFKLKKIALGGDP ETMDNISSN QTH
Sbjct: 181 FDDENRNYKLKLLEEVKNYLFLENAPVAYDNDLFKLKKIALGGDPTTETMDNISSNVQTH 240
Query: 242 LLSLKKHDCSVYYQDKKGFLSYSMGGISVLANLFLTQNPDFDFYMDVNAKGNVSLRANGN 301
LLSLKKHDCSVYYQDKKGFLSYSMGGISVLANLFLTQNPDFDFY+DVN+KGNVSLRANGN
Sbjct: 241 LLSLKKHDCSVYYQDKKGFLSYSMGGISVLANLFLTQNPDFDFYIDVNSKGNVSLRANGN 300
Query: 302 CDVCELSQMCFNGGGHRNASGGKIDGFRESFNYRDIKEQIEEIFNNA 348
CDVCELSQMCFNGGGHRNASGGKIDGF+ESFNY+DIKEQ+EEIFNNA
Sbjct: 301 CDVCELSQMCFNGGGHRNASGGKIDGFKESFNYKDIKEQVEEIFNNA 347
>ref|NP_282035.1| (NC_002163) hypothetical protein Cj0881c [Campylobacter jejuni]
pir||B81361 hypothetical protein Cj0881c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73140.1| (AL139076) hypothetical protein Cj0881c [Campylobacter jejuni]
Length = 348
Score = 262 bits (670), Expect = 4e-69
Identities = 141/348 (40%), Positives = 212/348 (60%), Gaps = 14/348 (4%)
Query: 2 MQVYHLSHIDLDGYACQLVSKQFFKNIQCYNANYGREVSARIYEILNAIAQSKE-SEFLI 60
M++YHLSH DLDGYACQ + +FK+++ YN+NYG+E++ I+ I + + + +I
Sbjct: 1 MKIYHLSHTDLDGYACQFIVNFYFKSVKFYNSNYGKEINENFNSIIGDIEKDENFGKAII 60
Query: 61 LVSDLNLNLNEAEYLQDKIQEHRLQNKNIQIQLLDHHISGKEVAESFHWYFLDINRCATK 120
L++DLNLNLN+ E + +E KN +I LLDHH SG+E A+ + WY LD RCATK
Sbjct: 61 LITDLNLNLNQCEEFEKICKE-----KNTKIFLLDHHQSGEECAQKYSWYLLDSKRCATK 115
Query: 121 IVYEFLKKHYA-ILEPKNTTWLEPLVEMVNSVDIWDTQGYGFELGKVCMRMINQSSELNR 179
IVY+F K +LE L V++VN+VDIW ++ FELGKV + +I + E+NR
Sbjct: 116 IVYDFFSKICTPVLE------LSKFVDVVNAVDIWLSEDENFELGKVFLGLIANAKEINR 169
Query: 180 FMFDDENRNYKLKLLEEVKNYLFLENAPVAYDNDLFKLKKIALGGDPDAETMDNISSNAQ 239
MF + +Y LL++ ++ ENA + DN +KK D +T+ N+ S
Sbjct: 170 VMFKESQIDYMFFLLDKAWKFIGKENANILLDNATHFIKKDYFARKND-DTLSNLISYFV 228
Query: 240 THLLSLKKHDCSVYYQDKKGFLSYSMGGISVLANLFLTQNPDFDFYMDVNAKGNVSLRAN 299
LS K + S+ Y+ KG L+ ++G SV+ N FL +NPD+DF++DV+++ +S RAN
Sbjct: 229 VEKLSELKENFSIEYEGHKGILTSNIGNTSVIGNDFLVKNPDYDFFIDVSSRKTLSFRAN 288
Query: 300 GNCDVCELSQMCFNGGGHRNASGGKIDGFRESFNYRDIKEQIEEIFNN 347
G DV +++ GGGH+NASGG F++ NY IK QI ++ +
Sbjct: 289 GKIDVSLMAKNLVGGGGHKNASGGLFATFKDGANYNYIKAQIIDLIKS 336
>emb|CAA70008.1| (Y08762) hypothetical protein [Helicobacter pylori]
Length = 58
Score = 119 bits (298), Expect = 5e-26
Identities = 57/58 (98%), Positives = 57/58 (98%)
Query: 1 MMQVYHLSHIDLDGYACQLVSKQFFKNIQCYNANYGREVSARIYEILNAIAQSKESEF 58
MMQVYHLSHIDLDGYACQLVSKQFFKN QCYNANYGREVSARIYEILNAIAQSKESEF
Sbjct: 1 MMQVYHLSHIDLDGYACQLVSKQFFKNTQCYNANYGREVSARIYEILNAIAQSKESEF 58
>gb|AAD27690.1|AF125197_5 (AF125197) hypothetical protein [Helicobacter pylori]
Length = 55
Score = 114 bits (284), Expect = 2e-24
Identities = 54/55 (98%), Positives = 55/55 (99%)
Query: 2 MQVYHLSHIDLDGYACQLVSKQFFKNIQCYNANYGREVSARIYEILNAIAQSKES 56
MQVYHLSHIDLDGYACQLVSKQFFKNIQCYNANYGREVSARIYEILNAIAQSKE+
Sbjct: 1 MQVYHLSHIDLDGYACQLVSKQFFKNIQCYNANYGREVSARIYEILNAIAQSKEN 55
>ref|NP_389702.1| (NC_000964) yngD [Bacillus subtilis]
pir||A69893 hypothetical protein yngD - Bacillus subtilis
emb|CAB13703.1| (Z99113) yngD [Bacillus subtilis]
Length = 399
Score = 62.8 bits (151), Expect = 6e-09
Identities = 79/334 (23%), Positives = 145/334 (42%), Gaps = 55/334 (16%)
Query: 4 VYHL-SHIDLDGYACQLVSKQFF-KNIQC-YNANYGREVSARIYEILNAIAQSKESEFLI 60
+YHL SH DLDG C +V+K F K+++ YN+ G ++A++ L +S + L
Sbjct: 1 MYHLYSHNDLDGVGCGIVAKLAFGKDVEIRYNSVNG--LNAQVQYFLEKAKESNRQDALF 58
Query: 61 LVSDLNLNLNEAEYLQDKIQEHRLQNKNIQIQLLDHHISGKEVAESFHWYFLDIN----- 115
++DL +N E L + + + +++L+DHH + + E W F+ +
Sbjct: 59 -ITDLAVNEENEERLNEYV------HAGGKVKLIDHHKTALHLNEH-EWGFVQVEYDDGR 110
Query: 116 -RCATKIVYEFLKKHYAILEPKNTTWLEPLVEMVNSVDIWDTQGYGFELGKVCMRMINQS 174
AT ++Y +L ++ ++P N L+ E+V D W+ + Y + Q+
Sbjct: 111 LTSATSLLYGYLIEN-GFMKPTNA--LDQFTELVRQYDTWEWERYDQK----------QA 157
Query: 175 SELNRFMFDDENRNYKLKLLEEVKNYLFLENAPVAYDNDLFKLKKIALGGDPDAETMDNI 234
LN F ++ K+++ + + D F D + + +D
Sbjct: 158 KRLNDLFFLLSIDEFEAKMIQRLSTH----------DEFFFD--------DFEEKLLDLE 199
Query: 235 SSNAQTHLLSLKKHDCSVYYQDKKGFLSYSMGGISVLANLFLTQNPDFDFYMDVNAKGN- 293
+ +L K+ + + + ++ S L N NP D Y+ + + G+
Sbjct: 200 DEKIERYLRRKKREMVQTFVHEHCVGIVHAESYHSELGNRLGKDNPHLD-YIAILSMGSK 258
Query: 294 -VSLRA-NGNCDVCELSQMCFNGGGHRNASGGKI 325
VSLR + DV E++ + GGGH ASG I
Sbjct: 259 RVSLRTIHDYIDVSEIAGR-YGGGGHAKASGCSI 291
>ref|NP_146981.1| (NC_000854) hypothetical protein [Aeropyrum pernix]
pir||A72767 hypothetical protein APE0124 - Aeropyrum pernix (strain K1)
dbj|BAA79035.1| (AP000058) 332aa long hypothetical protein [Aeropyrum pernix]
Length = 332
Score = 44.3 bits (103), Expect = 0.002
Identities = 75/332 (22%), Positives = 137/332 (40%), Gaps = 54/332 (16%)
Query: 4 VYHLSHIDLDGYACQLVSKQFFKNIQCYNANYGREVSARIYEILNAIAQSKE---SEFLI 60
++ ++H DLDG V+ + + + Y V A Y + N+I + LI
Sbjct: 8 LFIITHTDLDGIGAGAVAVRLLGRV---DGGY-TVVFAEPYNLHNSIEDILDHLGKGDLI 63
Query: 61 LVSDLNLNLNEAEYLQDKIQEHRLQNKNIQIQLLDHHISGKEVAESFHW----YFLDINR 116
++SDL N D + +K + ++ DHHI + E +D +
Sbjct: 64 IISDLGANRESLPRAADLLAS--ATSKGVAVKWFDHHIWSNDELELLRRAGVEVTVDTST 121
Query: 117 CATKIVYEFLKKHYAILEPKNTTWLEPLVEMVNSVDIWDTQGYGFELGKVCMRMINQSSE 176
CAT +V +L +++ V+ V S D+W + L R++ + ++
Sbjct: 122 CATGVVARYLTPD------GGDGFIKQFVDAVCSADLWK---WTHPLSGKLFRVVGERNQ 172
Query: 177 LNRFMFDDENRNYKLKLLEEVKNYLFLENAPVAYDNDLFKLKKIALGGDPDAETMDNISS 236
+ +K K+L + A V +D +L K L G + E +
Sbjct: 173 ---------DMEWKHKVLAKFA-------AGVMWDEELEK----RLEGYVNEELRGY--T 210
Query: 237 NAQTHLLSLKKHDCSVY--YQDKKGFLSYSMGGISVLANLFLTQNPDFDFYMDVNAKGNV 294
A + +++K HD + Y++ +G S SM G +L + D + V + G +
Sbjct: 211 TAIKNAVTIKIHDLRIASTYKNFRGPPSSSMIGALLLHRY------NADIAIIVRSDGGL 264
Query: 295 SLRANGNCDVCELSQMCFNGGGHRNASGGKID 326
SLR+ +V +++ GGGH A+G KI+
Sbjct: 265 SLRSR-RVNVQPIARE-LGGGGHPKAAGAKIE 294
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.320 0.137 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 224,549,614
Number of Sequences: 1026957
Number of extensions: 9466925
Number of successful extensions: 29235
Number of sequences better than 1.0e-02: 7
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 29224
Number of HSP's gapped (non-prelim): 8
length of query: 348
length of database: 324,149,939
effective HSP length: 122
effective length of query: 226
effective length of database: 198,861,185
effective search space: 44942627810
effective search space used: 44942627810
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 98 (42.4 bits)