BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644735|ref|NP_206905.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(155 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_206905.1| (NC_000915) conserved hypothetical protein... 321 1e-87
ref|NP_222818.1| (NC_000921) putative [Helicobacter pylori ... 304 2e-82
pdb|1J6X|B Chain B, Crystal Structure Of Helicobacter Pylor... 292 7e-79
ref|NP_372658.1| (NC_002758) autoinducer-2 production prote... 231 2e-60
ref|NP_464813.1| (NC_003210) conserved hypothetical protein... 219 6e-57
ref|NP_470663.1| (NC_003212) conserved hypothetical protein... 219 1e-56
gb|AAM48492.1| (AF084044) putative LuxS [Listeria monocytog... 219 1e-56
ref|NP_561094.1| (NC_003366) autoinducer-2 production prote... 138 2e-32
ref|NP_390945.1| (NC_000964) ytjB [Bacillus subtilis] >gi|7... 136 6e-32
pdb|1J98|A Chain A, The 1.2 Angstrom Structure Of Bacillus ... 132 1e-30
pdb|1IE0|A Chain A, Crystal Structure Of Luxs 132 1e-30
ref|NP_244219.1| (NC_002570) BH3353~unknown conserved prote... 130 6e-30
ref|NP_296108.1| (NC_001263) conserved hypothetical protein... 128 2e-29
ref|NP_658824.1| (NC_003995) LuxS, LuxS protein [Bacillus a... 126 7e-29
pdb|1INN|A Chain A, Crystal Structure Of D. Radiodurans Lux... 122 1e-27
ref|NP_266422.1| (NC_002662) HYPOTHETICAL PROTEIN [Lactococ... 122 2e-27
ref|NP_269689.1| (NC_002737) autoinducer-2 production prote... 118 2e-26
ref|NP_607700.1| (NC_003485) LuxS [Streptococcus pyogenes M... 118 2e-26
gb|AAG28749.1|AF295118_1 (AF295118) LuxS [Streptococcus pyo... 118 2e-26
ref|NP_344874.1| (NC_003028) autoinducer-2 production prote... 117 4e-26
sp|Q9Z5X1|LUXS_VIBHA Autoinducer-2 production protein luxS ... 117 4e-26
ref|NP_230208.1| (NC_002505) autoinducer-2 production prote... 117 5e-26
ref|NP_289238.1| (NC_002655) orf, hypothetical protein [Esc... 115 2e-25
gb|AAK15466.1|AF305637_1 (AF305637) autoinducer-2 synthase ... 114 4e-25
ref|NP_406766.1| (NC_003143) autoinducer-2 production prote... 114 4e-25
ref|NP_417172.1| (NC_000913) orf, hypothetical protein [Esc... 113 6e-25
gb|AAK85153.1| (AY044337) autoinducer 2 synthetase-like pro... 111 3e-24
ref|NP_282345.1| (NC_002163) hypothetical protein Cj1198 [C... 107 3e-23
ref|NP_461743.1| (NC_003197) quorum sensing protein, produc... 107 3e-23
ref|NP_457215.1| (NC_003198) autoinducer-2 production prote... 105 2e-22
ref|NP_438651.1| (NC_000907) conserved hypothetical protein... 104 4e-22
ref|NP_283287.1| (NC_003116) conserved hypothetical protein... 103 6e-22
ref|NP_274974.1| (NC_003112) conserved hypothetical protein... 103 8e-22
ref|NP_245991.1| (NC_002663) unknown [Pasteurella multocida... 103 8e-22
gb|AAL82730.1| (AY078283) autoinducer-2 synthase; LuxS [Cam... 103 8e-22
pdb|1J6W|A Chain A, Crystal Structure Of Haemophilus Influe... 97 6e-20
sp|O50164|LUXS_BORBU Autoinducer-2 production protein luxS ... 75 2e-13
ref|NP_212511.1| (NC_001318) conserved hypothetical protein... 75 2e-13
ref|NP_349544.1| (NC_003030) Uncharacterized conserved prot... 65 2e-10
gb|AAB40286.1| (U83186) ygaG [Escherichia coli] 62 3e-09
>ref|NP_206905.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
sp|O24931|LUXS_HELPY Autoinducer-2 production protein luxS (AI-2 synthesis protein)
pir||A64533 conserved hypothetical protein HP0105 - Helicobacter pylori
(strain 26695)
gb|AAD07175.1| (AE000532) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 155
Score = 321 bits (823), Expect = 1e-87
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MKTPKMNVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSL 60
MKTPKMNVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSL
Sbjct: 1 MKTPKMNVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSL 60
Query: 61 EHLVAEIIRNHASYVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPAS 120
EHLVAEIIRNHASYVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPAS
Sbjct: 61 EHLVAEIIRNHASYVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPAS 120
Query: 121 NEKQCGWAANHTLEGAKDLARAFLDKRAEWSEVGV 155
NEKQCGWAANHTLEGAKDLARAFLDKRAEWSEVGV
Sbjct: 121 NEKQCGWAANHTLEGAKDLARAFLDKRAEWSEVGV 155
>ref|NP_222818.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZMW8|LUXS_HELPJ Autoinducer-2 production protein luxS (AI-2 synthesis protein)
pir||C71973 hypothetical protein jhp0097 - Helicobacter pylori (strain J99)
gb|AAD05688.1| (AE001449) putative [Helicobacter pylori J99]
Length = 152
Score = 304 bits (778), Expect = 2e-82
Identities = 145/151 (96%), Positives = 150/151 (99%)
Query: 5 KMNVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLV 64
KMNVESFNLDHTKVKAPYVR+ADRKKGVNGDLIVKYDVRFKQPN+DHMDMPSLHSLEHLV
Sbjct: 2 KMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRFKQPNRDHMDMPSLHSLEHLV 61
Query: 65 AEIIRNHASYVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQ 124
AEIIRNHA+YVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKA EVPASNEKQ
Sbjct: 62 AEIIRNHANYVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKAKEVPASNEKQ 121
Query: 125 CGWAANHTLEGAKDLARAFLDKRAEWSEVGV 155
CGWAANHTLEGA++LARAFLDKRAEWSEVGV
Sbjct: 122 CGWAANHTLEGAQNLARAFLDKRAEWSEVGV 152
>pdb|1J6X|B Chain B, Crystal Structure Of Helicobacter Pylori Luxs
pdb|1J6X|A Chain A, Crystal Structure Of Helicobacter Pylori Luxs
Length = 160
Score = 292 bits (748), Expect = 7e-79
Identities = 140/151 (92%), Positives = 145/151 (95%)
Query: 5 KMNVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLV 64
K NVESFNLDHTKVKAPYVR+ADRKKGVNGDLIVKYDVRFKQPN+DH D PSLHSLEHLV
Sbjct: 2 KXNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRFKQPNRDHXDXPSLHSLEHLV 61
Query: 65 AEIIRNHASYVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQ 124
AEIIRNHA+YVVDWSP GCQTGFYLTVLNHDNYTEILEVLEKT QDVLKA EVPASNEKQ
Sbjct: 62 AEIIRNHANYVVDWSPXGCQTGFYLTVLNHDNYTEILEVLEKTXQDVLKAKEVPASNEKQ 121
Query: 125 CGWAANHTLEGAKDLARAFLDKRAEWSEVGV 155
CGWAANHTLEGA++LARAFLDKRAEWSEVGV
Sbjct: 122 CGWAANHTLEGAQNLARAFLDKRAEWSEVGV 152
>ref|NP_372658.1| (NC_002758) autoinducer-2 production protein [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_375241.1| (NC_002745) autoinducer-2 production protein LuxS [Staphylococcus
aureus subsp. aureus N315]
ref|NP_646875.1| (NC_003923) autoinducer-2 production protein LuxS [Staphylococcus
aureus subsp. aureus MW2]
sp|Q99SC5|LUXS_STAAM Autoinducer-2 production protein luxS (AI-2 synthesis protein)
dbj|BAB43220.1| (AP003136) autoinducer-2 production protein LuxS [Staphylococcus
aureus subsp. aureus N315]
dbj|BAB58296.1| (AP003364) autoinducer-2 production protein [Staphylococcus aureus
subsp. aureus Mu50]
dbj|BAB95923.1| (AP004829) autoinducer-2 production protein LuxS [Staphylococcus
aureus subsp. aureus MW2]
Length = 156
Score = 231 bits (588), Expect = 2e-60
Identities = 104/149 (69%), Positives = 128/149 (85%)
Query: 5 KMNVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLV 64
KMNVESFNLDHTKV AP++R+A +G+NGD+I KYD+RFKQPN++HMDMP LHSLEHL+
Sbjct: 3 KMNVESFNLDHTKVVAPFIRLAGTMEGLNGDVIHKYDIRFKQPNKEHMDMPGLHSLEHLM 62
Query: 65 AEIIRNHASYVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQ 124
AE IRNH+ VVD SPMGCQTGFY++ +NHDNY ++L ++E T+ DVL ATEVPA NE Q
Sbjct: 63 AENIRNHSDKVVDLSPMGCQTGFYVSFINHDNYDDVLNIVEATLNDVLNATEVPACNEVQ 122
Query: 125 CGWAANHTLEGAKDLARAFLDKRAEWSEV 153
CGWAA+H+LEGAK +A+AFLDKR EW +V
Sbjct: 123 CGWAASHSLEGAKTIAQAFLDKRNEWHDV 151
>ref|NP_464813.1| (NC_003210) conserved hypothetical protein [Listeria monocytogenes
EGD-e]
sp|Q8Y7I9|LUXS_LISMO Autoinducer-2 production protein luxS (AI-2 synthesis protein)
emb|CAC99366.1| (AL591978) conserved hypothetical protein [Listeria monocytogenes]
Length = 155
Score = 219 bits (559), Expect = 6e-57
Identities = 102/149 (68%), Positives = 123/149 (82%)
Query: 5 KMNVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLV 64
KMNVESFNLDHTKVKAP+VR+A K GV+GD I KYDVRFKQPN++HM+MP+LHSLEHL+
Sbjct: 4 KMNVESFNLDHTKVKAPFVRLAGTKVGVHGDEIYKYDVRFKQPNKEHMEMPALHSLEHLM 63
Query: 65 AEIIRNHASYVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQ 124
AE+ RNH +VD SPMGCQTGFY++ +NH +Y + LE++ T+ DVL ATEVPA NE Q
Sbjct: 64 AELARNHTDKLVDISPMGCQTGFYVSFINHSDYDDALEIIATTLTDVLVATEVPACNEVQ 123
Query: 125 CGWAANHTLEGAKDLARAFLDKRAEWSEV 153
CGWAA+H+LEGAK LA FL KR+EW V
Sbjct: 124 CGWAASHSLEGAKALAEEFLAKRSEWKNV 152
>ref|NP_470663.1| (NC_003212) conserved hypothetical protein [Listeria innocua]
sp|Q92C64|LUXS_LISIN Autoinducer-2 production protein luxS (AI-2 synthesis protein)
emb|CAC96558.1| (AL596168) conserved hypothetical protein [Listeria innocua]
Length = 155
Score = 219 bits (557), Expect = 1e-56
Identities = 101/149 (67%), Positives = 123/149 (81%)
Query: 5 KMNVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLV 64
KMNVESFNLDHTKVKAP+VR+A K GV+GD I KYDVRFKQPN++HM+MP+LHSLEHL+
Sbjct: 4 KMNVESFNLDHTKVKAPFVRLAGTKVGVHGDEIYKYDVRFKQPNKEHMEMPALHSLEHLM 63
Query: 65 AEIIRNHASYVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQ 124
AE+ RNH +VD SPMGCQTGFY++ +NH++Y + LE+L T+ DVL A VPA NE Q
Sbjct: 64 AELARNHTDKLVDISPMGCQTGFYMSFINHNDYDDALEILATTLTDVLAADSVPACNEVQ 123
Query: 125 CGWAANHTLEGAKDLARAFLDKRAEWSEV 153
CGWAA+H+LEGAK+LA FL KR+EW V
Sbjct: 124 CGWAASHSLEGAKELAEEFLAKRSEWKNV 152
>gb|AAM48492.1| (AF084044) putative LuxS [Listeria monocytogenes]
Length = 155
Score = 219 bits (557), Expect = 1e-56
Identities = 102/149 (68%), Positives = 122/149 (81%)
Query: 5 KMNVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLV 64
KMNVESFNLDHTKVKAP+VR+A K GV+GD I KYDVRFKQPN++HM+MP+LHSLEHL+
Sbjct: 4 KMNVESFNLDHTKVKAPFVRLAGTKVGVHGDEIYKYDVRFKQPNKEHMEMPALHSLEHLM 63
Query: 65 AEIIRNHASYVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQ 124
AE+ RNH +VD SPMGCQTGFY++ +NH +Y + LE++ T+ DVL ATEVPA NE Q
Sbjct: 64 AELARNHTDKLVDISPMGCQTGFYVSFINHSDYDDALEIIATTLTDVLVATEVPACNEVQ 123
Query: 125 CGWAANHTLEGAKDLARAFLDKRAEWSEV 153
CGWAA+H LEGAK LA FL KR+EW V
Sbjct: 124 CGWAASHRLEGAKALAEEFLAKRSEWKNV 152
>ref|NP_561094.1| (NC_003366) autoinducer-2 production protein [Clostridium
perfringens]
sp|Q9XDU6|LUXS_CLOPE Autoinducer-2 production protein luxS (AI-2 synthesis protein)
pir||T43793 conserved hypothetical protein [imported] - Clostridium perfringens
dbj|BAA81641.1| (AB028629) hypothetical protein [Clostridium perfringens]
dbj|BAB79884.1| (AP003185) autoinducer-2 production protein [Clostridium
perfringens]
Length = 151
Score = 138 bits (348), Expect = 2e-32
Identities = 69/140 (49%), Positives = 94/140 (66%)
Query: 6 MNVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVA 65
+ VESF LDHTKVKAPYVR A K G GD++ K+D+RF QPN++ + +H+LEH +A
Sbjct: 2 VKVESFELDHTKVKAPYVRKAGIKIGPKGDIVSKFDLRFVQPNKELLSDKGMHTLEHFLA 61
Query: 66 EIIRNHASYVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQC 125
+R V+D SPMGC+TGFYLT + +I+E LE ++ VL+ E+PA+NE QC
Sbjct: 62 GFMREKLDDVIDISPMGCKTGFYLTSFGDIDVKDIIEALEYSLSKVLEQEEIPAANELQC 121
Query: 126 GWAANHTLEGAKDLARAFLD 145
G A H+LE AK A+ L+
Sbjct: 122 GSAKLHSLELAKSHAKQVLE 141
>ref|NP_390945.1| (NC_000964) ytjB [Bacillus subtilis]
sp|O34667|LUXS_BACSU Autoinducer-2 production protein luxS (AI-2 synthesis protein)
pir||A69994 hypothetical protein ytjB - Bacillus subtilis
gb|AAC00235.1| (AF008220) YtjB [Bacillus subtilis]
emb|CAB15045.1| (Z99119) ytjB [Bacillus subtilis]
Length = 157
Score = 136 bits (343), Expect = 6e-32
Identities = 71/148 (47%), Positives = 96/148 (63%), Gaps = 5/148 (3%)
Query: 7 NVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAE 66
+VESF LDH V APYVR K ++ K+D+RF QPN+ M ++H+LEHL+A
Sbjct: 3 SVESFELDHNAVVAPYVRHCGVHKVGTDGVVNKFDIRFCQPNKQAMKPDTIHTLEHLLAF 62
Query: 67 IIRNHASY-----VVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASN 121
IR+HA ++D SPMGCQTG+YL V EI+++LE TM++ ++ TE+PA+N
Sbjct: 63 TIRSHAEKYDHFDIIDISPMGCQTGYYLVVSGEPTSAEIVDLLEDTMKEAVEITEIPAAN 122
Query: 122 EKQCGWAANHTLEGAKDLARAFLDKRAE 149
EKQCG A H LEGAK L R +L + E
Sbjct: 123 EKQCGQAKLHDLEGAKRLMRFWLSQDKE 150
>pdb|1J98|A Chain A, The 1.2 Angstrom Structure Of Bacillus Subtilis Luxs
pdb|1JVI|A Chain A, The 2.2 Angstrom Resolution Structure Of Bacillus Subtilis
LuxsRIBOSILHOMOCYSTEINE COMPLEX
pdb|1JQW|A Chain A, The 2.3 Angstrom Resolution Structure Of Bacillus Subtilis
LuxsHOMOCYSTEINE COMPLEX
Length = 157
Score = 132 bits (332), Expect = 1e-30
Identities = 70/148 (47%), Positives = 95/148 (63%), Gaps = 5/148 (3%)
Query: 7 NVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAE 66
+VESF LDH V APYVR K ++ K+D+RF QPN+ M ++H+LEHL+A
Sbjct: 3 SVESFELDHNAVVAPYVRHCGVHKVGTDGVVNKFDIRFCQPNKQAMKPDTIHTLEHLLAF 62
Query: 67 IIRNHASY-----VVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASN 121
IR+HA ++D SPMG QTG+YL V EI+++LE TM++ ++ TE+PA+N
Sbjct: 63 TIRSHAEKYDHFDIIDISPMGXQTGYYLVVSGETTSAEIVDLLEDTMKEAVEITEIPAAN 122
Query: 122 EKQCGWAANHTLEGAKDLARAFLDKRAE 149
EKQCG A H LEGAK L R +L + E
Sbjct: 123 EKQCGQAKLHDLEGAKRLMRFWLSQDKE 150
>pdb|1IE0|A Chain A, Crystal Structure Of Luxs
Length = 157
Score = 132 bits (332), Expect = 1e-30
Identities = 70/148 (47%), Positives = 95/148 (63%), Gaps = 5/148 (3%)
Query: 7 NVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAE 66
+VESF LDH V APYVR K ++ K+D+RF QPN+ M ++H+LEHL+A
Sbjct: 3 SVESFELDHNAVVAPYVRHCGVHKVGTDGVVNKFDIRFCQPNKQAMKPDTIHTLEHLLAF 62
Query: 67 IIRNHASY-----VVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASN 121
IR+HA ++D SPMG QTG+YL V EI+++LE TM++ ++ TE+PA+N
Sbjct: 63 TIRSHAEKYDHFDIIDISPMGXQTGYYLVVSGEPTSAEIVDLLEDTMKEAVEITEIPAAN 122
Query: 122 EKQCGWAANHTLEGAKDLARAFLDKRAE 149
EKQCG A H LEGAK L R +L + E
Sbjct: 123 EKQCGQAKLHDLEGAKRLMRFWLSQDKE 150
>ref|NP_244219.1| (NC_002570) BH3353~unknown conserved protein [Bacillus halodurans]
sp|Q9K7K8|LUXS_BACHD Autoinducer-2 production protein luxS (AI-2 synthesis protein)
dbj|BAB07072.1| (AP001518) BH3353~unknown conserved protein [Bacillus halodurans]
Length = 158
Score = 130 bits (326), Expect = 6e-30
Identities = 74/143 (51%), Positives = 93/143 (64%), Gaps = 7/143 (4%)
Query: 8 VESFNLDHTKVKAPYVR-VADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAE 66
VESF LDHT VKAP+VR K G NG+ + K+D+RF QPN+ M +H+LEHL+A
Sbjct: 4 VESFELDHTIVKAPFVRPCGTHKVGTNGE-VNKFDIRFFQPNKQAMKPDVIHTLEHLLAL 62
Query: 67 IIRNHASY-----VVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASN 121
IR A V+D SPMGCQTGFYL + EI++VLE+TM+ L+ EVPA+N
Sbjct: 63 NIRKFAEAYDHFDVIDLSPMGCQTGFYLIMSGKPTVEEIIDVLEQTMKYSLELEEVPAAN 122
Query: 122 EKQCGWAANHTLEGAKDLARAFL 144
EKQCG A H L+GAK L +L
Sbjct: 123 EKQCGQAKLHDLDGAKKLMTYWL 145
>ref|NP_296108.1| (NC_001263) conserved hypothetical protein [Deinococcus
radiodurans]
sp|Q9RRU8|LUXS_DEIRA Autoinducer-2 production protein luxS (AI-2 synthesis protein)
pir||D75280 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF11932.1|AE002069_6 (AE002069) conserved hypothetical protein [Deinococcus radiodurans]
Length = 158
Score = 128 bits (321), Expect = 2e-29
Identities = 65/141 (46%), Positives = 91/141 (64%), Gaps = 1/141 (0%)
Query: 7 NVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAE 66
NVESF+LDHTKVKAPYVR+A K GD I KYD+RF QPNQ +D ++H+LEHL+A
Sbjct: 6 NVESFDLDHTKVKAPYVRLAGVKTTPKGDQISKYDLRFLQPNQGAIDPAAIHTLEHLLAG 65
Query: 67 IIRNHASYVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATE-VPASNEKQC 125
+R+H VVD SPMGC+TG Y+ V+ + +++ E ++D + +P +E +C
Sbjct: 66 YMRDHLEGVVDVSPMGCRTGMYMAVIGEPDEQGVMKAFEAALKDTAGHDQPIPGVSELEC 125
Query: 126 GWAANHTLEGAKDLARAFLDK 146
G +H L A+ AR LD+
Sbjct: 126 GNYRDHDLAAARQHARDVLDQ 146
>ref|NP_658824.1| (NC_003995) LuxS, LuxS protein [Bacillus anthracis A2012] [Bacillus
anthracis str. A2012]
Length = 157
Score = 126 bits (317), Expect = 7e-29
Identities = 66/145 (45%), Positives = 92/145 (62%), Gaps = 5/145 (3%)
Query: 7 NVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAE 66
+VESF LDHT VKAPYVR + ++ K+D+RF QPN+ M +H+LEHL+A
Sbjct: 3 SVESFELDHTIVKAPYVRHCGVHNVGSDGIVNKFDIRFCQPNKQAMKPDVIHTLEHLLAF 62
Query: 67 IIRNHASY-----VVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASN 121
+R + ++D SPMGCQTG+YL V EI+++LE T++D ++ TE+PA+N
Sbjct: 63 NLRKYIDRYPHFDIIDISPMGCQTGYYLVVSGTPTVREIIDLLELTLKDAVQITEIPAAN 122
Query: 122 EKQCGWAANHTLEGAKDLARAFLDK 146
E QCG A H LEGAK L +L +
Sbjct: 123 ETQCGQAKLHDLEGAKRLMNFWLSQ 147
>pdb|1INN|A Chain A, Crystal Structure Of D. Radiodurans Luxs, P21
pdb|1J6V|A Chain A, Crystal Structure Of D. Radiodurans Luxs, C2
pdb|1INN|B Chain B, Crystal Structure Of D. Radiodurans Luxs, P21
Length = 166
Score = 122 bits (306), Expect = 1e-27
Identities = 64/141 (45%), Positives = 87/141 (61%), Gaps = 1/141 (0%)
Query: 7 NVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAE 66
NVESF+LDHTKVKAPYVR+A K GD I KYD+RF QPNQ +D ++H+LEHL+A
Sbjct: 6 NVESFDLDHTKVKAPYVRLAGVKTTPKGDQISKYDLRFLQPNQGAIDPAAIHTLEHLLAG 65
Query: 67 IIRNHASYVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATE-VPASNEKQC 125
R+H VVD SP GC+TG Y V+ + + + E ++D + +P +E +C
Sbjct: 66 YXRDHLEGVVDVSPXGCRTGXYXAVIGEPDEQGVXKAFEAALKDTAGHDQPIPGVSELEC 125
Query: 126 GWAANHTLEGAKDLARAFLDK 146
G +H L A+ AR LD+
Sbjct: 126 GNYRDHDLAAARQHARDVLDQ 146
>ref|NP_266422.1| (NC_002662) HYPOTHETICAL PROTEIN [Lactococcus lactis subsp. lactis]
sp|Q9CIU0|LUXS_LACLA Autoinducer-2 production protein luxS (AI-2 synthesis protein)
gb|AAK04364.1|AE006264_3 (AE006264) HYPOTHETICAL PROTEIN [Lactococcus lactis subsp. lactis]
Length = 158
Score = 122 bits (305), Expect = 2e-27
Identities = 59/143 (41%), Positives = 92/143 (64%), Gaps = 4/143 (2%)
Query: 8 VESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEI 67
VESF LDHTKV APYVR+ + G GD+I +DVRF QPN + + M +LH++EH +A +
Sbjct: 4 VESFQLDHTKVLAPYVRLIGSETGPKGDVITNFDVRFVQPNANAIGMAALHTIEHSMASL 63
Query: 68 IRNHASYVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKA----TEVPASNEK 123
IR+ ++D+SP GCQTGF++ + + EI +V++ +++++ VP EK
Sbjct: 64 IRDRIDGMIDFSPFGCQTGFHMIMWGEHSSEEIAKVIKSSLEELASDEFGWDNVPGVAEK 123
Query: 124 QCGWAANHTLEGAKDLARAFLDK 146
+CG NH+L GAK+ ++ L +
Sbjct: 124 ECGNYRNHSLFGAKEWSKKILSE 146
>ref|NP_269689.1| (NC_002737) autoinducer-2 production protein [Streptococcus
pyogenes] [Streptococcus pyogenes M1 GAS]
sp|Q99YL7|LUXS_STRPY Autoinducer-2 production protein luxS (AI-2 synthesis protein)
gb|AAK34410.1| (AE006595) autoinducer-2 production protein [Streptococcus pyogenes
M1 GAS]
Length = 160
Score = 118 bits (296), Expect = 2e-26
Identities = 57/147 (38%), Positives = 95/147 (63%), Gaps = 3/147 (2%)
Query: 3 TPKMNVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEH 62
T ++ VESF LDHT VKAPYVR+ + G GD I +DVR QPNQ+ ++ LH++EH
Sbjct: 2 TKEVIVESFELDHTIVKAPYVRLISEEFGPKGDRITNFDVRLVQPNQNSIETAGLHTIEH 61
Query: 63 LVAEIIRNHASYVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDV---LKATEVPA 119
L+A++IR ++D SP GC+TGF+L + + T+I +V++ +++++ + +VP
Sbjct: 62 LLAKLIRQRIDGMIDCSPFGCRTGFHLIMWGKHSSTDIAKVIKSSLEEIATGITWEDVPG 121
Query: 120 SNEKQCGWAANHTLEGAKDLARAFLDK 146
+ + CG +H+L AK+ A+ +D+
Sbjct: 122 TTLESCGNYKDHSLFAAKEWAQLIIDQ 148
>ref|NP_607700.1| (NC_003485) LuxS [Streptococcus pyogenes MGAS8232]
gb|AAL98199.1| (AE010077) LuxS [Streptococcus pyogenes MGAS8232]
Length = 190
Score = 118 bits (296), Expect = 2e-26
Identities = 57/147 (38%), Positives = 95/147 (63%), Gaps = 3/147 (2%)
Query: 3 TPKMNVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEH 62
T ++ VESF LDHT VKAPYVR+ + G GD I +DVR QPNQ+ ++ LH++EH
Sbjct: 32 TKEVIVESFELDHTIVKAPYVRLISEEFGPKGDRITNFDVRLVQPNQNSIETAGLHTIEH 91
Query: 63 LVAEIIRNHASYVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDV---LKATEVPA 119
L+A++IR ++D SP GC+TGF+L + + T+I +V++ +++++ + +VP
Sbjct: 92 LLAKLIRQRIDGMIDCSPFGCRTGFHLIMWGKHSSTDIAKVIKSSLEEIATGITWEDVPG 151
Query: 120 SNEKQCGWAANHTLEGAKDLARAFLDK 146
+ + CG +H+L AK+ A+ +D+
Sbjct: 152 TTLESCGNYKDHSLFAAKEWAQLIIDQ 178
>gb|AAG28749.1|AF295118_1 (AF295118) LuxS [Streptococcus pyogenes]
Length = 170
Score = 118 bits (296), Expect = 2e-26
Identities = 57/147 (38%), Positives = 95/147 (63%), Gaps = 3/147 (2%)
Query: 3 TPKMNVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEH 62
T ++ VESF LDHT VKAPYVR+ + G GD I +DVR QPNQ+ ++ LH++EH
Sbjct: 12 TKEVIVESFELDHTIVKAPYVRLISEEFGPKGDRITNFDVRLVQPNQNSIETAGLHTIEH 71
Query: 63 LVAEIIRNHASYVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDV---LKATEVPA 119
L+A++IR ++D SP GC+TGF+L + + T+I +V++ +++++ + +VP
Sbjct: 72 LLAKLIRQRIDGMIDCSPFGCRTGFHLIMWGKHSSTDIAKVIKSSLEEIATGITWEDVPG 131
Query: 120 SNEKQCGWAANHTLEGAKDLARAFLDK 146
+ + CG +H+L AK+ A+ +D+
Sbjct: 132 TTLESCGNYKDHSLFAAKEWAQLIIDQ 158
>ref|NP_344874.1| (NC_003028) autoinducer-2 production protein [Streptococcus
pneumoniae TIGR4]
ref|NP_357902.1| (NC_003098) Autoinducer-2 production protein [Streptococcus
pneumoniae R6]
sp|Q97SJ9|LUXS_STRPN Autoinducer-2 production protein luxS (AI-2 synthesis protein)
gb|AAK74514.1| (AE007346) autoinducer-2 production protein [Streptococcus
pneumoniae TIGR4]
gb|AAK99112.1| (AE008411) Autoinducer-2 production protein [Streptococcus
pneumoniae R6]
Length = 160
Score = 117 bits (293), Expect = 4e-26
Identities = 55/142 (38%), Positives = 90/142 (62%), Gaps = 3/142 (2%)
Query: 8 VESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEI 67
VESF LDHT VKAPYVR+ + G GD+I YD+R QPN+D + LH++EHL+A++
Sbjct: 7 VESFELDHTIVKAPYVRLIGEETGPKGDIISNYDIRLVQPNEDSIPTAGLHTIEHLLAKL 66
Query: 68 IRNHASYVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKAT---EVPASNEKQ 124
IR ++D SP GC+TGF++ + +I V++ +++++ + T +VP + +
Sbjct: 67 IRTRIDGMIDCSPFGCRTGFHMIMWGRHTSAKIAAVIKDSLKEIAETTTWEDVPGTTIES 126
Query: 125 CGWAANHTLEGAKDLARAFLDK 146
CG +H+L AK+ A+ L++
Sbjct: 127 CGNYKDHSLFSAKEWAKLILEQ 148
>sp|Q9Z5X1|LUXS_VIBHA Autoinducer-2 production protein luxS (AI-2 synthesis protein)
gb|AAD17292.1| (AF120098) autoinducer-2 production protein LuxS [Vibrio harveyi]
Length = 172
Score = 117 bits (293), Expect = 4e-26
Identities = 58/145 (40%), Positives = 91/145 (62%), Gaps = 7/145 (4%)
Query: 8 VESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEI 67
++SF +DHT++ AP VRVA + GD I +D+RF PN+D + +H+LEHL A
Sbjct: 4 LDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGF 63
Query: 68 IRNHAS----YVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKA---TEVPAS 120
+RNH + ++D SPMGC+TGFY++++ + ++ + M+DVLK ++P
Sbjct: 64 MRNHLNGDSVEIIDISPMGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPEL 123
Query: 121 NEKQCGWAANHTLEGAKDLARAFLD 145
NE QCG AA H+L+ AK +A+ L+
Sbjct: 124 NEYQCGTAAMHSLDEAKQIAKNILE 148
>ref|NP_230208.1| (NC_002505) autoinducer-2 production protein [Vibrio cholerae]
sp|Q9KUG4|LUXS_VIBCH Autoinducer-2 production protein luxS (AI-2 synthesis protein)
pir||F82309 autoinducer-2 production protein VC0557 [imported] - Vibrio
cholerae (group O1 strain N16961)
gb|AAF93725.1| (AE004141) autoinducer-2 production protein [Vibrio cholerae]
Length = 172
Score = 117 bits (292), Expect = 5e-26
Identities = 59/141 (41%), Positives = 88/141 (61%), Gaps = 7/141 (4%)
Query: 8 VESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEI 67
++SF +DHT++ AP VRVA + GD I +D+RF PN+D + +H+LEHL A
Sbjct: 4 LDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGF 63
Query: 68 IRNHAS----YVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKA---TEVPAS 120
+RNH + ++D SPMGC+TGFY++++ ++ + MQDVLK ++P
Sbjct: 64 MRNHLNGSQVEIIDISPMGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPEL 123
Query: 121 NEKQCGWAANHTLEGAKDLAR 141
NE QCG AA H+LE AK +A+
Sbjct: 124 NEYQCGTAAMHSLEEAKAIAK 144
>ref|NP_289238.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
ref|NP_311576.1| (NC_002695) autoinducer production protein LuxSE.c. [Escherichia
coli O157:H7]
sp|Q8X902|LUXS_ECO57 Autoinducer-2 production protein luxS (AI-2 synthesis protein)
gb|AAG57796.1|AE005497_7 (AE005497) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
dbj|BAB36972.1| (AP002562) autoinducer production protein LuxSE.c. [Escherichia
coli O157:H7]
Length = 171
Score = 115 bits (287), Expect = 2e-25
Identities = 57/146 (39%), Positives = 93/146 (63%), Gaps = 7/146 (4%)
Query: 8 VESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEI 67
++SF +DHT+++AP VRVA +GD I +D+RF PN++ M +H+LEHL A
Sbjct: 4 LDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGF 63
Query: 68 IRNHAS----YVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKA---TEVPAS 120
+RNH + ++D SPMGC+TGFY++++ + + +V + M+DVLK ++P
Sbjct: 64 MRNHLNGNGVEIIDISPMGCRTGFYMSLIGTPDEQRVADVWKAAMEDVLKVQDQNQIPEL 123
Query: 121 NEKQCGWAANHTLEGAKDLARAFLDK 146
N QCG H+L+ A+D+AR+ L++
Sbjct: 124 NVYQCGTYQMHSLQEAQDIARSILER 149
>gb|AAK15466.1|AF305637_1 (AF305637) autoinducer-2 synthase LuxS [Vibrio vulnificus]
gb|AAK95612.1|AF401230_2 (AF401230) autoinducer-2 synthase LuxS [Vibrio vulnificus]
Length = 172
Score = 114 bits (284), Expect = 4e-25
Identities = 57/144 (39%), Positives = 89/144 (61%), Gaps = 7/144 (4%)
Query: 8 VESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEI 67
++SF +DHT++ AP VRVA + GD I +D+RF PN+D + +H+LEHL A
Sbjct: 4 LDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGF 63
Query: 68 IRNHAS----YVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKA---TEVPAS 120
+R H + ++D SPMGC+TGFY++++ + ++ +M+DVLK ++P
Sbjct: 64 MRKHLNGASVEIIDISPMGCRTGFYMSLIGAPSEQDVASAWTASMEDVLKVESQNKIPEL 123
Query: 121 NEKQCGWAANHTLEGAKDLARAFL 144
NE QCG AA H+L+ AK +A+ L
Sbjct: 124 NEYQCGTAAMHSLDEAKQIAQNIL 147
>ref|NP_406766.1| (NC_003143) autoinducer-2 production protein [Yersinia pestis]
sp|Q8ZBU3|LUXS_YERPE Autoinducer-2 production protein luxS (AI-2 synthesis protein)
emb|CAC92532.1| (AJ414156) autoinducer-2 production protein [Yersinia pestis]
Length = 171
Score = 114 bits (284), Expect = 4e-25
Identities = 59/146 (40%), Positives = 91/146 (61%), Gaps = 7/146 (4%)
Query: 8 VESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEI 67
++SF +DHT +KAP VRVA K +GD I +D+RF PN++ M +H+LEHL A
Sbjct: 4 LDSFTVDHTIMKAPAVRVAKTMKTPHGDEITVFDLRFCVPNKEVMPEKGIHTLEHLFAGF 63
Query: 68 IRNHAS----YVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATE---VPAS 120
+R+H + ++D SPMGC+TGFY++++ + + + + M DVLK T+ +P
Sbjct: 64 MRDHLNGDGVEIIDISPMGCRTGFYMSLIGTPDEQRVADAWKAAMADVLKVTDQRKIPEL 123
Query: 121 NEKQCGWAANHTLEGAKDLARAFLDK 146
NE QCG H+LE A+ +A+ LD+
Sbjct: 124 NEYQCGTYHMHSLEEAQSIAKDILDR 149
>ref|NP_417172.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
sp|P45578|LUXS_ECOLI Autoinducer-2 production protein luxS (AI-2 synthesis protein)
pir||H65048 hypothetical protein in emrB 3' region - Escherichia coli (strain
K-12)
gb|AAC75734.1| (AE000353) orf, hypothetical protein [Escherichia coli K12]
dbj|BAA16549.1| (D90891) similar to [SwissProt Accession Number P45578]
[Escherichia coli]
dbj|BAA16554.1| (D90892) similar to [SwissProt Accession Number P45578]
[Escherichia coli]
Length = 171
Score = 113 bits (283), Expect = 6e-25
Identities = 56/146 (38%), Positives = 92/146 (62%), Gaps = 7/146 (4%)
Query: 8 VESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEI 67
++SF +DHT+++AP VRVA +GD I +D+RF PN++ M +H+LEHL A
Sbjct: 4 LDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGF 63
Query: 68 IRNHAS----YVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKA---TEVPAS 120
+RNH + ++D SPMGC+TGFY++++ + + + + M+DVLK ++P
Sbjct: 64 MRNHLNGNGVEIIDISPMGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPEL 123
Query: 121 NEKQCGWAANHTLEGAKDLARAFLDK 146
N QCG H+L+ A+D+AR+ L++
Sbjct: 124 NVYQCGTYQMHSLQEAQDIARSILER 149
>gb|AAK85153.1| (AY044337) autoinducer 2 synthetase-like protein LuxS [Proteus
mirabilis]
Length = 171
Score = 111 bits (277), Expect = 3e-24
Identities = 57/144 (39%), Positives = 86/144 (59%), Gaps = 7/144 (4%)
Query: 8 VESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEI 67
++SF +DHT++ AP VRVA K +GD I +D+RF PN+ M +H+LEHL A
Sbjct: 4 LDSFTVDHTRMSAPAVRVAKTMKTPSGDTITVFDLRFTVPNKKAMPEKGIHTLEHLFAGF 63
Query: 68 IRNHAS----YVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATE---VPAS 120
+RNH + ++D SPMGC+TGFY++++ + + + M+DVLK + +P
Sbjct: 64 MRNHLNGEGVEIIDISPMGCRTGFYMSLIGQPDEQRVANAWKAAMEDVLKVKDQNHIPEL 123
Query: 121 NEKQCGWAANHTLEGAKDLARAFL 144
N QCG H+L A+D+AR L
Sbjct: 124 NVYQCGTYEMHSLAEAQDIARDIL 147
>ref|NP_282345.1| (NC_002163) hypothetical protein Cj1198 [Campylobacter jejuni]
sp|Q9PN97|LUXS_CAMJE Autoinducer-2 production protein luxS (AI-2 synthesis protein)
pir||H81325 hypothetical protein Cj1198 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73452.1| (AL139077) hypothetical protein Cj1198 [Campylobacter jejuni]
Length = 164
Score = 107 bits (268), Expect = 3e-23
Identities = 58/145 (40%), Positives = 88/145 (60%), Gaps = 7/145 (4%)
Query: 8 VESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEI 67
++SF +DHTK+ AP VR+A K GD I +D+RF PN+D M H+LEHL A
Sbjct: 4 LDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGF 63
Query: 68 IRNHAS----YVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATE---VPAS 120
+R+H + ++D SPMGC+TGFY++++ + I + E M+DVL ++ +P
Sbjct: 64 MRDHLNSNSVEIIDISPMGCRTGFYMSLIGTPDEKSIAKAWEAAMKDVLSVSDQSKIPEL 123
Query: 121 NEKQCGWAANHTLEGAKDLARAFLD 145
N QCG A H+L+ AK +A+ L+
Sbjct: 124 NIYQCGTCAMHSLDEAKQIAQKVLN 148
>ref|NP_461743.1| (NC_003197) quorum sensing protein, produces autoinducer -
acyl-homoserine lactone-signaling molecules [Salmonella
typhimurium LT2]
sp|Q9L4T0|LUXS_SALTY Autoinducer-2 production protein luxS (AI-2 synthesis protein)
gb|AAF73475.1|AF268390_2 (AF268390) LuxS [Salmonella typhimurium]
gb|AAL21702.1| (AE008828) quorum sensing protein, produces autoinducer -
acyl-homoserine lactone-signaling molecules [Salmonella
typhimurium LT2]
Length = 171
Score = 107 bits (268), Expect = 3e-23
Identities = 55/146 (37%), Positives = 89/146 (60%), Gaps = 7/146 (4%)
Query: 8 VESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEI 67
++SF +DHT+++AP VRVA +GD I +D+RF PN++ M +H+LEHL A
Sbjct: 4 LDSFAVDHTRMQAPAVRVAKTMNTPHGDAITVFDLRFCIPNKEVMPEKGIHTLEHLFAGF 63
Query: 68 IRNHAS----YVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKA---TEVPAS 120
+R+H + ++D SPMGC+TGFY++++ + + + + M DVLK ++P
Sbjct: 64 MRDHLNGNGVEIIDISPMGCRTGFYMSLIGTPDEQRVADAWKAAMADVLKVQDQNQIPEL 123
Query: 121 NEKQCGWAANHTLEGAKDLARAFLDK 146
N QCG H+L A+D+AR L++
Sbjct: 124 NVYQCGTYQMHSLSEAQDIARHILER 149
>ref|NP_457215.1| (NC_003198) autoinducer-2 production protein LuxS [Salmonella
enterica subsp. enterica serovar Typhi]
sp|Q8Z4D7|LUXS_SALTI Autoinducer-2 production protein luxS (AI-2 synthesis protein)
emb|CAD05928.1| (AL627276) autoinducer-2 production protein LuxS [Salmonella
enterica subsp. enterica serovar Typhi]
Length = 171
Score = 105 bits (261), Expect = 2e-22
Identities = 54/146 (36%), Positives = 88/146 (59%), Gaps = 7/146 (4%)
Query: 8 VESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEI 67
++SF +DHT+++AP VR A +GD I +D+RF PN++ M +H+LEHL A
Sbjct: 4 LDSFAVDHTRMQAPAVRGAKTMNTPHGDAITVFDLRFCIPNKEVMPEKGIHTLEHLFAGF 63
Query: 68 IRNHAS----YVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKA---TEVPAS 120
+R+H + ++D SPMGC+TGFY++++ + + + + M DVLK ++P
Sbjct: 64 MRDHLNGNGVEIIDISPMGCRTGFYMSLIGTPDEQRVADAWKAAMADVLKVQDQNQIPEL 123
Query: 121 NEKQCGWAANHTLEGAKDLARAFLDK 146
N QCG H+L A+D+AR L++
Sbjct: 124 NVYQCGTYQMHSLSEAQDIARHILER 149
>ref|NP_438651.1| (NC_000907) conserved hypothetical protein [Haemophilus influenzae
Rd]
sp|P44007|LUXS_HAEIN Autoinducer-2 production protein luxS (AI-2 synthesis protein)
pir||G64008 hypothetical protein HI0491 - Haemophilus influenzae (strain Rd
KW20)
pdb|1JOE|A Chain A, Crystal Structure Of Autoinducer-2 Production Protein
(Luxs) From Heamophilus Influenzae
pdb|1JOE|B Chain B, Crystal Structure Of Autoinducer-2 Production Protein
(Luxs) From Heamophilus Influenzae
pdb|1JOE|C Chain C, Crystal Structure Of Autoinducer-2 Production Protein
(Luxs) From Heamophilus Influenzae
pdb|1JOE|D Chain D, Crystal Structure Of Autoinducer-2 Production Protein
(Luxs) From Heamophilus Influenzae
gb|AAC22149.1| (U32731) conserved hypothetical protein [Haemophilus influenzae Rd]
Length = 167
Score = 104 bits (259), Expect = 4e-22
Identities = 54/141 (38%), Positives = 85/141 (59%), Gaps = 7/141 (4%)
Query: 8 VESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEI 67
++SF +DHTK+ AP VR+A GD I +D+RF PN++ + +H+LEHL A
Sbjct: 4 LDSFKVDHTKMNAPAVRIAKTMLTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGF 63
Query: 68 IRNHAS----YVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATE---VPAS 120
+R+H + ++D SPMGC+TGFY++++ N ++ E +MQDVL + +P
Sbjct: 64 MRDHLNGDSIEIIDISPMGCRTGFYMSLIGTPNEQKVSEAWLASMQDVLGVQDQASIPEL 123
Query: 121 NEKQCGWAANHTLEGAKDLAR 141
N QCG H+LE A ++A+
Sbjct: 124 NIYQCGSYTEHSLEDAHEIAK 144
>ref|NP_283287.1| (NC_003116) conserved hypothetical protein [Neisseria meningitidis
Z2491]
sp|Q9JWB0|LUXS_NEIMA Autoinducer-2 production protein luxS (AI-2 synthesis protein)
pir||G81963 conserved hypothetical protein NMA0463 [imported] - Neisseria
meningitidis (group A strain Z2491)
emb|CAB83759.1| (AL162753) conserved hypothetical protein [Neisseria meningitidis
Z2491]
Length = 168
Score = 103 bits (257), Expect = 6e-22
Identities = 53/147 (36%), Positives = 89/147 (60%), Gaps = 7/147 (4%)
Query: 8 VESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEI 67
++SF +DHT++ AP VRVA GD I +D+RF PN++ + +H+LEHL A
Sbjct: 4 LDSFKVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFCVPNKEILPEKGIHTLEHLFAGF 63
Query: 68 IRNHAS----YVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKA---TEVPAS 120
+R+H + ++D SPMGC+TGFY++++ + ++ + +MQDVL +++P
Sbjct: 64 MRDHLNGNGVEIIDISPMGCRTGFYMSLIGTPSEQQVADAWLASMQDVLNVKDQSKIPEL 123
Query: 121 NEKQCGWAANHTLEGAKDLARAFLDKR 147
NE QCG H+L A+ +A+ L ++
Sbjct: 124 NEYQCGTYQMHSLAEAQQIAQNVLARK 150
>ref|NP_274974.1| (NC_003112) conserved hypothetical protein [Neisseria meningitidis
MC58]
sp|Q9JXL8|LUXS_NEIMB Autoinducer-2 production protein luxS (AI-2 synthesis protein)
pir||F81020 conserved hypothetical protein NMB1981 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF42309.1| (AE002546) conserved hypothetical protein [Neisseria meningitidis
MC58]
Length = 168
Score = 103 bits (256), Expect = 8e-22
Identities = 53/147 (36%), Positives = 89/147 (60%), Gaps = 7/147 (4%)
Query: 8 VESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEI 67
++SF +DHT++ AP VRVA GD I +D+RF PN++ + +H+LEHL A
Sbjct: 4 LDSFKVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFCVPNKEILPGKGIHTLEHLFAGF 63
Query: 68 IRNHAS----YVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKA---TEVPAS 120
+R+H + ++D SPMGC+TGFY++++ + ++ + +MQDVL +++P
Sbjct: 64 MRDHLNGNGVEIIDISPMGCRTGFYMSLIGTPSEQQVADAWLASMQDVLNVKDQSKIPEL 123
Query: 121 NEKQCGWAANHTLEGAKDLARAFLDKR 147
NE QCG H+L A+ +A+ L ++
Sbjct: 124 NEYQCGTYQMHSLAEAQQIAQNVLARK 150
>ref|NP_245991.1| (NC_002663) unknown [Pasteurella multocida]
sp|P57901|LUXS_PASMU Autoinducer-2 production protein luxS (AI-2 synthesis protein)
gb|AAK03138.1| (AE006146) unknown [Pasteurella multocida]
Length = 168
Score = 103 bits (256), Expect = 8e-22
Identities = 52/146 (35%), Positives = 87/146 (58%), Gaps = 7/146 (4%)
Query: 8 VESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEI 67
++SF +DHT++KAP VR+A GD I +D+RF PN++ + +H+LEHL A
Sbjct: 4 LDSFKVDHTRMKAPAVRIAKTMTTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGF 63
Query: 68 IRNHAS----YVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVL---KATEVPAS 120
+R+H + ++D SPMGC+TGFY++++ N ++ + +M+DVL ++P
Sbjct: 64 MRDHLNGTEVEIIDISPMGCRTGFYMSLIGTPNEQQVADAWLASMRDVLLVKDQAQIPEL 123
Query: 121 NEKQCGWAANHTLEGAKDLARAFLDK 146
N QCG H+L A+ +A L++
Sbjct: 124 NAFQCGTYTEHSLAEAQQIAHNVLER 149
>gb|AAL82730.1| (AY078283) autoinducer-2 synthase; LuxS [Campylobacter coli]
Length = 151
Score = 103 bits (256), Expect = 8e-22
Identities = 54/140 (38%), Positives = 85/140 (60%), Gaps = 7/140 (5%)
Query: 13 LDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEIIRNHA 72
+DHTK+ AP VR+A K GD I +D+RF PN+D M H+LEHL A +R+H
Sbjct: 2 VDHTKMPAPAVRLAKTMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHL 61
Query: 73 S----YVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKA---TEVPASNEKQC 125
+ ++D SPMGC+TGFY++++ + + + E M+D+L +++P N QC
Sbjct: 62 NSDLVEIIDISPMGCRTGFYMSLIGIPDEKSVAKAWEAAMKDILNVSDQSQIPELNIYQC 121
Query: 126 GWAANHTLEGAKDLARAFLD 145
G A H+L+ AK++A+ L+
Sbjct: 122 GTCAMHSLDEAKEIAQKVLN 141
>pdb|1J6W|A Chain A, Crystal Structure Of Haemophilus Influenzae Luxs
pdb|1J6W|B Chain B, Crystal Structure Of Haemophilus Influenzae Luxs
Length = 175
Score = 97.1 bits (240), Expect = 6e-20
Identities = 52/141 (36%), Positives = 80/141 (55%), Gaps = 7/141 (4%)
Query: 8 VESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEI 67
++SF +DHTK AP VR+A GD I +D+RF PN++ + +H+LEHL A
Sbjct: 4 LDSFKVDHTKXNAPAVRIAKTXLTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGF 63
Query: 68 IRNHAS----YVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATE---VPAS 120
R+H + ++D SP GC+TGFY +++ N ++ E + QDVL + +P
Sbjct: 64 XRDHLNGDSIEIIDISPXGCRTGFYXSLIGTPNEQKVSEAWLASXQDVLGVQDQASIPEL 123
Query: 121 NEKQCGWAANHTLEGAKDLAR 141
N QCG H+LE A ++A+
Sbjct: 124 NIYQCGSYTEHSLEDAHEIAK 144
>sp|O50164|LUXS_BORBU Autoinducer-2 production protein luxS (AI-2 synthesis protein)
Length = 157
Score = 75.1 bits (183), Expect = 2e-13
Identities = 40/135 (29%), Positives = 79/135 (57%), Gaps = 7/135 (5%)
Query: 8 VESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPN-QDHMDMPSLHSLEHLVAE 66
+ SF +DHTK+ P + V+ RK + D+R K PN + ++ ++H++EH+ A
Sbjct: 4 ITSFTIDHTKLN-PGIYVS-RKDTFENVIFTTIDIRIKAPNIEPIIENAAIHTIEHIGAT 61
Query: 67 IIRNHASY---VVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATE-VPASNE 122
++RN+ + +V + PMGC+TGFYL + ++++++ +++ +E +P +++
Sbjct: 62 LLRNNEVWTEKIVYFGPMGCRTGFYLIIFGDYESKDLVDLVSWLFSEIVNFSEPIPGASD 121
Query: 123 KQCGWAANHTLEGAK 137
K+CG H L+ AK
Sbjct: 122 KECGNYKEHNLDMAK 136
>ref|NP_212511.1| (NC_001318) conserved hypothetical protein [Borrelia burgdorferi]
pir||H70146 conserved hypothetical protein BB0377 - Lyme disease spirochete
gb|AAC66762.1| (AE001143) conserved hypothetical protein [Borrelia burgdorferi]
Length = 173
Score = 75.1 bits (183), Expect = 2e-13
Identities = 40/135 (29%), Positives = 79/135 (57%), Gaps = 7/135 (5%)
Query: 8 VESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPN-QDHMDMPSLHSLEHLVAE 66
+ SF +DHTK+ P + V+ RK + D+R K PN + ++ ++H++EH+ A
Sbjct: 20 ITSFTIDHTKLN-PGIYVS-RKDTFENVIFTTIDIRIKAPNIEPIIENAAIHTIEHIGAT 77
Query: 67 IIRNHASY---VVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATE-VPASNE 122
++RN+ + +V + PMGC+TGFYL + ++++++ +++ +E +P +++
Sbjct: 78 LLRNNEVWTEKIVYFGPMGCRTGFYLIIFGDYESKDLVDLVSWLFSEIVNFSEPIPGASD 137
Query: 123 KQCGWAANHTLEGAK 137
K+CG H L+ AK
Sbjct: 138 KECGNYKEHNLDMAK 152
>ref|NP_349544.1| (NC_003030) Uncharacterized conserved protein fron YGAG family,
predicted metal-dependent enzyme [Clostridium
acetobutylicum]
sp|Q97F13|LUXS_CLOAB Autoinducer-2 production protein luxS (AI-2 synthesis protein)
gb|AAK80884.1|AE007791_4 (AE007791) Uncharacterized conserved protein fron YGAG family,
predicted metal-dependent enzyme [Clostridium
acetobutylicum]
Length = 158
Score = 65.1 bits (157), Expect = 2e-10
Identities = 40/125 (32%), Positives = 71/125 (56%), Gaps = 9/125 (7%)
Query: 8 VESFNLDHTKVKAPYVRVADRKKGVNGDLIVK-YDVRFKQPNQDH-MDMPSLHSLEHLVA 65
+ SF ++H ++ P V V+ + K GD+++ +D+R PN++ M+ +H++EHL A
Sbjct: 4 IASFTVNHLTLQ-PGVYVSRKDKF--GDVVITTFDIRMTSPNEEPVMNTAEVHTIEHLGA 60
Query: 66 EIIRNHASYV---VDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLK-ATEVPASN 121
+RNH +Y V + PMGC+TGFYL + +I+ +L + + + EVP +
Sbjct: 61 TFLRNHGTYAEKTVYFGPMGCRTGFYLILQGDYTSNDIVPLLREMYKFIADFKGEVPGAA 120
Query: 122 EKQCG 126
+ CG
Sbjct: 121 ARDCG 125
>gb|AAB40286.1| (U83186) ygaG [Escherichia coli]
Length = 76
Score = 61.6 bits (148), Expect = 3e-09
Identities = 28/64 (43%), Positives = 43/64 (66%)
Query: 8 VESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEI 67
++SF +DHT+++AP VRVA +G+ I +D+RF PN++ M +H+LEHL A
Sbjct: 4 LDSFTVDHTRMEAPAVRVAKTMNTPHGEAITVFDLRFCVPNKEVMPERGIHTLEHLFAGF 63
Query: 68 IRNH 71
+RNH
Sbjct: 64 MRNH 67
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.317 0.132 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,577,417
Number of Sequences: 1026957
Number of extensions: 3635809
Number of successful extensions: 8717
Number of sequences better than 1.0e-02: 40
Number of HSP's better than 0.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 8631
Number of HSP's gapped (non-prelim): 40
length of query: 155
length of database: 324,149,939
effective HSP length: 111
effective length of query: 44
effective length of database: 210,157,712
effective search space: 9246939328
effective search space used: 9246939328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 92 (40.0 bits)