BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645660|ref|NP_207836.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(146 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207836.1| (NC_000915) conserved hypothetical protein... 286 3e-77
ref|NP_223098.1| (NC_000921) putative [Helicobacter pylori ... 278 9e-75
ref|NP_281349.1| (NC_002163) hypothetical protein Cj0138 [C... 93 5e-19
ref|NP_348423.1| (NC_003030) Uncharacterized protein, YhbC ... 89 6e-18
ref|NP_562606.1| (NC_003366) conserved hypothetical protein... 86 7e-17
ref|NP_623015.1| (NC_003869) conserved hypothetical protein... 79 1e-14
ref|NP_253434.1| (NC_002516) conserved hypothetical protein... 75 2e-13
gb|AAC45133.1| (U85643) 15 kDa protein [Pseudomonas syringa... 72 1e-12
ref|NP_602814.1| (NC_003454) Hypothetical cytosolic protein... 72 1e-12
ref|NP_406957.1| (NC_003143) conserved hypothetical protein... 69 6e-12
ref|NP_389541.1| (NC_000964) alternate gene name: ymxA~simi... 69 1e-11
ref|NP_243283.1| (NC_002570) BH2417~unknown conserved prote... 67 3e-11
ref|NP_213179.1| (NC_000918) hypothetical protein [Aquifex ... 66 7e-11
ref|NP_645965.1| (NC_003923) conserved hypotehtical protein... 65 1e-10
ref|NP_371789.1| (NC_002758) conserved hypothetical protein... 65 1e-10
ref|NP_289746.1| (NC_002655) orf, hypothetical protein [Esc... 65 2e-10
ref|NP_657785.1| (NC_003995) DUF150, Uncharacterized BCR, Y... 64 4e-10
ref|NP_229575.1| (NC_000853) conserved hypothetical protein... 63 6e-10
ref|NP_220926.1| (NC_000963) unknown [Rickettsia prowazekii... 61 2e-09
ref|NP_230290.1| (NC_002505) conserved hypothetical protein... 60 3e-09
sp|P03843|YHBC_ECOLI Hypothetical protein yhbC >gi|42143|em... 60 4e-09
ref|NP_353125.1| (NC_003062) AGR_C_138p [Agrobacterium tume... 60 4e-09
ref|NP_457670.1| (NC_003198) conserved hypothetical protein... 59 9e-09
ref|NP_540885.1| (NC_003317) protein associated with nus op... 58 2e-08
ref|NP_487868.1| (NC_003272) hypothetical protein [Nostoc s... 58 2e-08
ref|NP_470694.1| (NC_003212) conserved hypothetical protein... 57 3e-08
ref|NP_245698.1| (NC_002663) unknown [Pasteurella multocida... 57 4e-08
ref|NP_106195.1| (NC_002678) hypothetical protein [Mesorhiz... 55 2e-07
ref|NP_464846.1| (NC_003210) conserved hypothetical protein... 54 2e-07
ref|NP_266919.1| (NC_002662) conserved hypothetical protein... 54 3e-07
ref|NP_637863.1| (NC_003902) conserved hypothetical protein... 54 3e-07
ref|NP_439434.1| (NC_000907) conserved hypothetical protein... 54 4e-07
ref|NP_360455.1| (NC_003103) unknown [Rickettsia conorii] >... 53 5e-07
ref|NP_643000.1| (NC_003919) conserved hypothetical protein... 53 6e-07
ref|NP_384342.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN... 52 1e-06
ref|NP_269749.1| (NC_002737) conserved hypothetical protein... 51 2e-06
ref|NP_358071.1| (NC_003098) Conserved hypothetical protein... 50 4e-06
ref|NP_345068.1| (NC_003028) conserved hypothetical protein... 50 4e-06
pdb|1IB8|A Chain A, Solution Structure And Function Of A Co... 49 9e-06
emb|CAB36567.1| (AL035472) hypothetical protein MLCB596.11 ... 49 9e-06
ref|NP_297526.1| (NC_002488) conserved hypothetical protein... 48 2e-05
ref|NP_217358.1| (NC_000962) hypothetical protein Rv2842c [... 48 2e-05
ref|NP_440014.1| (NC_000911) hypothetical protein [Synechoc... 45 1e-04
ref|NP_212933.1| (NC_001318) conserved hypothetical protein... 43 5e-04
ref|NP_418865.1| (NC_002696) conserved hypothetical protein... 42 0.001
ref|NP_219328.1| (NC_000919) conserved hypothetical protein... 40 0.004
ref|NP_629831.1| (NC_003888) hypothetical protein SC5H4.27 ... 39 0.007
>ref|NP_207836.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
sp|O25687|YA46_HELPY Hypothetical protein HP1046
pir||F64650 conserved hypothetical protein HP1046 - Helicobacter pylori
(strain 26695)
gb|AAD08091.1| (AE000612) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 146
Score = 286 bits (732), Expect = 3e-77
Identities = 146/146 (100%), Positives = 146/146 (100%)
Query: 1 MTKKIEEKIGGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60
MTKKIEEKIGGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL
Sbjct: 1 MTKKIEEKIGGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60
Query: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLTNKESFQAVLKDANDLSA 120
LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLTNKESFQAVLKDANDLSA
Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLTNKESFQAVLKDANDLSA 120
Query: 121 DFELEDHAIKSVEYKDLKKVKTLFEW 146
DFELEDHAIKSVEYKDLKKVKTLFEW
Sbjct: 121 DFELEDHAIKSVEYKDLKKVKTLFEW 146
>ref|NP_223098.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZM44|YA46_HELPJ Hypothetical protein JHP0379
pir||G71940 hypothetical protein jhp0379 - Helicobacter pylori (strain J99)
gb|AAD05958.1| (AE001472) putative [Helicobacter pylori J99]
Length = 146
Score = 278 bits (710), Expect = 9e-75
Identities = 142/146 (97%), Positives = 144/146 (98%)
Query: 1 MTKKIEEKIGGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60
MTKKIEEKI GVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL
Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60
Query: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLTNKESFQAVLKDANDLSA 120
LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKL NKESFQAVLKDANDLSA
Sbjct: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLINKESFQAVLKDANDLSA 120
Query: 121 DFELEDHAIKSVEYKDLKKVKTLFEW 146
DFEL++HAIKSVEYKDLKKVKTLFEW
Sbjct: 121 DFELDNHAIKSVEYKDLKKVKTLFEW 146
>ref|NP_281349.1| (NC_002163) hypothetical protein Cj0138 [Campylobacter jejuni]
pir||B81431 hypothetical protein Cj0138 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB72622.1| (AL139074) hypothetical protein Cj0138 [Campylobacter jejuni]
Length = 140
Score = 92.8 bits (229), Expect = 5e-19
Identities = 51/131 (38%), Positives = 76/131 (57%), Gaps = 2/131 (1%)
Query: 17 GYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPLLDVCDFIQDAYILEVS 76
G YD LV EN + + R+ ++ G V+LD C ++SEI+SP+ DV + Y LEVS
Sbjct: 11 GLSFYDDELVSENGRKIYRIYVQK-EGGVNLDDCARLSEILSPIFDVESPVNGEYFLEVS 69
Query: 77 SMGLERTLKTPKHFKLSLGEKVEVKLTNKESFQAVLKDANDLSADFE-LEDHAIKSVEYK 135
S GLER L +HF S+GE V++ KE F+A + +D + E LE+ ++ +
Sbjct: 70 SPGLERKLSKIEHFAKSIGELVKITTNEKEKFEAKIIAVDDENITLENLENKEKTTINFN 129
Query: 136 DLKKVKTLFEW 146
D+KK +T EW
Sbjct: 130 DIKKARTFVEW 140
>ref|NP_348423.1| (NC_003030) Uncharacterized protein, YhbC family [Clostridium
acetobutylicum]
gb|AAK79763.1|AE007689_1 (AE007689) Uncharacterized protein, YhbC family [Clostridium
acetobutylicum]
Length = 149
Score = 89.4 bits (220), Expect = 6e-18
Identities = 56/144 (38%), Positives = 81/144 (55%), Gaps = 5/144 (3%)
Query: 1 MTKKIEEKIGGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60
M K+ E I V+ESLGY Y + +VKE+ + LRV + NG +SLD C++VS IS L
Sbjct: 1 MIDKLIEIIRPVVESLGYEFYHIEIVKEDGERYLRVYIDKENG-ISLDDCEKVSRAISDL 59
Query: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLTN----KESFQAVLKDAN 116
LD D I +Y LEVSS G+ RTL T +H K +G V++KL + ++ L D N
Sbjct: 60 LDEKDPIPYSYYLEVSSPGIYRTLFTEEHLKKYIGNTVDIKLKSSLEKSTNYSGKLIDVN 119
Query: 117 DLSADFELEDHAIKSVEYKDLKKV 140
+ + D+ + K +KK+
Sbjct: 120 EEDIVIVVSDNREFKIPRKKIKKI 143
>ref|NP_562606.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB81396.1| (AP003191) conserved hypothetical protein [Clostridium perfringens]
Length = 154
Score = 85.9 bits (211), Expect = 7e-17
Identities = 47/130 (36%), Positives = 76/130 (58%), Gaps = 4/130 (3%)
Query: 5 IEEKIGGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPLLDVC 64
+E +++ GY LY + VKEN ++ LR+ ++ P +SL C+ VS +S +LD+
Sbjct: 10 LEALCAPIVKEKGYDLYHIEYVKENNEYYLRLYIEKPEERISLRDCEIVSRALSDMLDIE 69
Query: 65 DFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEV----KLTNKESFQAVLKDANDLSA 120
D I+DAY LEVSS GL R L + +HF +G++V V L+ +++ + +LKD +
Sbjct: 70 DPIKDAYFLEVSSPGLNRRLHSDEHFNRFIGKEVFVGFKSSLSGRKNVKGILKDVQENEI 129
Query: 121 DFELEDHAIK 130
E E + IK
Sbjct: 130 IVECEGNEIK 139
>ref|NP_623015.1| (NC_003869) conserved hypothetical protein [Thermoanaerobacter
tengcongensis]
gb|AAM24619.1| (AE013099) conserved hypothetical protein [Thermoanaerobacter
tengcongensis]
Length = 151
Score = 78.6 bits (192), Expect = 1e-14
Identities = 45/97 (46%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Query: 6 EEKIGGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPLLDVCD 65
+E + ++E + L DV KE + LRV + + G ++LD CQ VSE +S LD D
Sbjct: 9 KELVMPILEENNFELVDVEYKKEGKHWYLRVYI-DKEGGITLDDCQLVSEYLSDRLDEVD 67
Query: 66 FIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKL 102
I +YILEVSS GL+R LKTP+ FK +LG++VEV L
Sbjct: 68 PIDHSYILEVSSPGLDRPLKTPRDFKRNLGKEVEVSL 104
>ref|NP_253434.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa]
pir||A83053 conserved hypothetical protein PA4746 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG08132.1|AE004888_7 (AE004888) conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 152
Score = 74.7 bits (182), Expect = 2e-13
Identities = 44/134 (32%), Positives = 75/134 (55%), Gaps = 8/134 (5%)
Query: 1 MTKKIEEK---IGGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEII 57
M+ K+E+ + V+E+LGY + V + + VLRV + P G + +D C+ VS +
Sbjct: 1 MSSKLEQLQALLAPVVEALGYECWGVEFISQGRHSVLRVYIDRPEG-ILIDDCEAVSRQV 59
Query: 58 SPLLDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLTN----KESFQAVLK 113
S +LDV D I Y LEVSS G++R L T + F GE+V+++L + + ++Q +L+
Sbjct: 60 SGILDVEDPISGEYTLEVSSPGMDRPLFTLEQFAKHAGEQVKIRLRSPYEGRRNYQGILR 119
Query: 114 DANDLSADFELEDH 127
+ ++DH
Sbjct: 120 GVEEQDVVVLVDDH 133
>gb|AAC45133.1| (U85643) 15 kDa protein [Pseudomonas syringae pv. syringae]
Length = 158
Score = 72.0 bits (175), Expect = 1e-12
Identities = 43/129 (33%), Positives = 73/129 (56%), Gaps = 5/129 (3%)
Query: 3 KKIEEKIGGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPLLD 62
+++++ + V+ +LGY + + + + VLR+ + + G V +D C VS IS +LD
Sbjct: 12 EQLQDLLAPVVVALGYQCWGIDFSSQGKHSVLRIYI-DKEGGVLVDDCAIVSRQISGVLD 70
Query: 63 VCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLTN----KESFQAVLKDANDL 118
V D I Y LEVSS G+ER L T + F GE+V++KL + + +FQ +L+ +
Sbjct: 71 VEDPISTEYTLEVSSPGMERPLFTIEQFASYAGEQVKIKLRSPFEGRRNFQGLLRGVEEQ 130
Query: 119 SADFELEDH 127
++EDH
Sbjct: 131 DVVVQVEDH 139
>ref|NP_602814.1| (NC_003454) Hypothetical cytosolic protein [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gb|AAL94113.1| (AE010504) Hypothetical cytosolic protein [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
Length = 156
Score = 71.6 bits (174), Expect = 1e-12
Identities = 41/150 (27%), Positives = 85/150 (56%), Gaps = 7/150 (4%)
Query: 1 MTKKIEEKIGGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60
+ +KI + IE + L DV V++ +R+ ++N NG ++++ C ++S I
Sbjct: 7 IVEKITRIVNPFIEEMNLSLVDVEYVQDGGYWYVRIFIENLNGDLNIEDCSKLSSKIEDK 66
Query: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEV----KLTNKESFQAVLKDAN 116
++ + I+ + LEVSS GLER LK + + +GEK+ + KL +K+ F+ ++K+ N
Sbjct: 67 VE--ELIEHKFFLEVSSPGLERPLKKLEDYTRFIGEKITLHLKHKLDDKKQFKTIIKEVN 124
Query: 117 DLSADFELEDHAIKSVEYKDLKKVKTLFEW 146
+ F ++ ++ +++ +++K LFE+
Sbjct: 125 GDNIIFLMDKKEVE-IKFNEIRKANILFEF 153
>ref|NP_406957.1| (NC_003143) conserved hypothetical protein [Yersinia pestis]
emb|CAC92727.1| (AJ414157) conserved hypothetical protein [Yersinia pestis]
Length = 152
Score = 69.3 bits (168), Expect = 6e-12
Identities = 41/117 (35%), Positives = 69/117 (58%), Gaps = 6/117 (5%)
Query: 1 MTKKIEEKIGGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60
+ +K+ E I +E+LGY L + ++ Q LR+ + + +G +++D C VS +S +
Sbjct: 6 LEQKLTEIISAPVEALGYELVGIEFIR-GRQSTLRIYIDSDDG-ITVDACADVSHQVSAV 63
Query: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKV----EVKLTNKESFQAVLK 113
LDV D I AY LEVSS GL+R + T +H+ LGE+V + + N+ +Q ++K
Sbjct: 64 LDVEDPITVAYNLEVSSPGLDRPMFTAEHYTRYLGEEVTLVLRMAMQNRRKWQGIIK 120
>ref|NP_389541.1| (NC_000964) alternate gene name: ymxA~similar to hypothetical
proteins [Bacillus subtilis]
sp|P32726|YLXS_BACSU Hypothetical protein ylxS (P15A)
pir||B36905 conserved hypothetical protein ylxS - Bacillus subtilis
emb|CAA79230.1| (Z18631) ORF1 [Bacillus subtilis]
emb|CAB13532.1| (Z99112) alternate gene name: ymxA~similar to hypothetical proteins
[Bacillus subtilis]
Length = 156
Score = 68.6 bits (166), Expect = 1e-11
Identities = 40/101 (39%), Positives = 58/101 (56%), Gaps = 1/101 (0%)
Query: 1 MTKKIEEKIGGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60
+T ++E +++SL L D+ VKE + LRV + + +G V ++ C +VSE +S
Sbjct: 5 VTDTVQEMAQPIVDSLQLELVDIEFVKEGQSWFLRVFIDSDDG-VDIEECAKVSEALSEK 63
Query: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVK 101
LD D I Y LEVSS G ER LK F+ SLG+ V +K
Sbjct: 64 LDEADPISQNYFLEVSSPGAERPLKKKADFEKSLGKNVYIK 104
>ref|NP_243283.1| (NC_002570) BH2417~unknown conserved protein [Bacillus halodurans]
dbj|BAB06136.1| (AP001515) BH2417~unknown conserved protein [Bacillus halodurans]
Length = 156
Score = 67.0 bits (162), Expect = 3e-11
Identities = 42/96 (43%), Positives = 54/96 (55%), Gaps = 1/96 (1%)
Query: 7 EKIGGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPLLDVCDF 66
E + ++E L LYDV KE + LRV + + G V L+ C +VSE +S LD D
Sbjct: 11 ELVKPILEQLDLELYDVEFKKEGKDWFLRVFIDSETG-VDLEDCGKVSERLSEKLDETDP 69
Query: 67 IQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKL 102
I+ AY LEVSS G ER LK K S+G+ V V L
Sbjct: 70 IEQAYFLEVSSPGAERPLKREKDLLRSIGKNVHVTL 105
>ref|NP_213179.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
sp|O66619|Y260_AQUAE Hypothetical protein AQ_260
pir||G70323 conserved hypothetical protein aq_260 - Aquifex aeolicus
gb|AAC06588.1| (AE000681) hypothetical protein [Aquifex aeolicus]
Length = 158
Score = 65.9 bits (159), Expect = 7e-11
Identities = 35/100 (35%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Query: 3 KKIEEKIGGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPLLD 62
KK++E + VI +G+ L+DV E VLR+ + + G +++ C+++S +S LLD
Sbjct: 10 KKVKEIVEPVIRGMGFKLFDVEFKPEGRGWVLRI-IADKEGGITIKDCEEISRKVSALLD 68
Query: 63 VCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKL 102
V D I +Y+LE++S GL R L +H+ G V++ L
Sbjct: 69 VEDIIPFSYLLEITSPGLTRPLTKVEHYDFFKGRLVKLIL 108
>ref|NP_645965.1| (NC_003923) conserved hypotehtical protein [Staphylococcus aureus
subsp. aureus MW2]
dbj|BAB95013.1| (AP004826) conserved hypotehtical protein [Staphylococcus aureus
subsp. aureus MW2]
Length = 155
Score = 65.1 bits (157), Expect = 1e-10
Identities = 39/121 (32%), Positives = 68/121 (55%), Gaps = 5/121 (4%)
Query: 1 MTKKIEEKIGGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60
+T+++E + ++E L + L DV VKE H LR+S+ + G V L+ C SE IS
Sbjct: 4 ITEQVEVIVKPIMEDLNFELVDVEYVKEGRDHFLRISI-DKEGGVDLNDCTLASEKISEA 62
Query: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKL----TNKESFQAVLKDAN 116
+D D I + Y L+V+S G ER +K + F+ ++ + V V L ++ + +L++ N
Sbjct: 63 MDANDPIPEMYYLDVASPGAERPIKKEQDFQNAITKPVFVSLYVPIEGEKEWLGILQEVN 122
Query: 117 D 117
+
Sbjct: 123 N 123
>ref|NP_371789.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_374381.1| (NC_002745) conserved hypotehtical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB42360.1| (AP003133) conserved hypotehtical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB57427.1| (AP003361) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
Length = 155
Score = 65.1 bits (157), Expect = 1e-10
Identities = 39/121 (32%), Positives = 68/121 (55%), Gaps = 5/121 (4%)
Query: 1 MTKKIEEKIGGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60
+T+++E + ++E L + L DV VKE H LR+S+ + G V L+ C SE IS
Sbjct: 4 ITEQVEVIVQPIMEDLNFELVDVEYVKEGRDHFLRISI-DKEGGVDLNDCTLASEKISEA 62
Query: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKL----TNKESFQAVLKDAN 116
+D D I + Y L+V+S G ER +K + F+ ++ + V V L ++ + +L++ N
Sbjct: 63 MDANDPIPEMYYLDVASPGAERPIKKEQDFQNAITKPVFVSLYVPIEGEKEWLGILQEVN 122
Query: 117 D 117
+
Sbjct: 123 N 123
>ref|NP_289746.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
ref|NP_312078.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
ref|NP_417639.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
pir||WMECN5 nus operon 15K protein - Escherichia coli
gb|AAA57973.1| (U18997) gtg start; differences from database entry [Escherichia
coli]
gb|AAC76204.1| (AE000397) orf, hypothetical protein [Escherichia coli K12]
gb|AAG58306.1|AE005545_8 (AE005545) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
dbj|BAB37474.1| (AP002564) hypothetical protein [Escherichia coli O157:H7]
Length = 152
Score = 64.7 bits (156), Expect = 2e-10
Identities = 41/117 (35%), Positives = 68/117 (58%), Gaps = 6/117 (5%)
Query: 1 MTKKIEEKIGGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60
+ +K+ E I +E+LG+ L + ++ LR+ + + +G +++D C VS +S +
Sbjct: 6 LEQKLTEMITAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDG-INVDDCADVSHQVSAV 63
Query: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKL----TNKESFQAVLK 113
LDV D I AY LEVSS GL+R L T +H+ +GE+V + L N+ +Q V+K
Sbjct: 64 LDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 120
>ref|NP_657785.1| (NC_003995) DUF150, Uncharacterized BCR, YhbC family COG0779
[Bacillus anthracis A2012] [Bacillus anthracis str.
A2012]
Length = 156
Score = 63.5 bits (153), Expect = 4e-10
Identities = 41/105 (39%), Positives = 58/105 (55%), Gaps = 5/105 (4%)
Query: 1 MTKKIEEKIGG----VIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEI 56
M KK+ E + ++E L L DV VKE + LRV + + G V ++ C VSE
Sbjct: 1 MDKKVTEVVEAFAQPIVEELNLELVDVEYVKEGQDWFLRVFIDSEKG-VDIEECGAVSER 59
Query: 57 ISPLLDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVK 101
+S LD D I Y L+VSS G ER LK K F+ ++G++V +K
Sbjct: 60 LSEALDKEDPIPHLYFLDVSSPGAERPLKKEKDFQQAVGKQVAIK 104
>ref|NP_229575.1| (NC_000853) conserved hypothetical protein [Thermotoga maritima]
pir||A72214 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
gb|AAD36841.1|AE001815_15 (AE001815) conserved hypothetical protein [Thermotoga maritima]
Length = 150
Score = 62.8 bits (151), Expect = 6e-10
Identities = 34/106 (32%), Positives = 60/106 (56%)
Query: 3 KKIEEKIGGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPLLD 62
+K+ ++ + E G ++DV +E+ VLR+ + NP G VS+ C+ S + LD
Sbjct: 8 EKVRKEAERIAEEQGLEIFDVQYRRESRGWVLRIIIDNPVGYVSVRDCELFSREMERFLD 67
Query: 63 VCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLTNKESF 108
DFI+ +Y LEVSS GL+R L+ P+ + G+ ++ + ++F
Sbjct: 68 REDFIEHSYTLEVSSPGLDRPLRGPRDYVRFTGKLAKIVTKDGKTF 113
>ref|NP_220926.1| (NC_000963) unknown [Rickettsia prowazekii]
sp|Q9ZCZ6|Y554_RICPR Hypothetical protein RP554
pir||A71660 hypothetical protein RP554 - Rickettsia prowazekii
emb|CAA15003.1| (AJ235272) unknown [Rickettsia prowazekii]
Length = 117
Score = 61.2 bits (147), Expect = 2e-09
Identities = 41/102 (40%), Positives = 64/102 (62%), Gaps = 4/102 (3%)
Query: 5 IEEKIGGVIE-SLGYLLYDVSLVKEN--EQHVLRVSLKNPNG-AVSLDICQQVSEIISPL 60
I ++I +IE SL + +++ LVK V+ V + + NG +S++ C VS IS +
Sbjct: 4 IAQQITNIIEESLTDMGFELVLVKFKGVSPKVVEVLIDSLNGNKISIEDCTNVSRTISAI 63
Query: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKL 102
LDV D I++AY LEVSS G+ERTL +++ LG +V++KL
Sbjct: 64 LDVEDLIEEAYSLEVSSSGIERTLVKFENYNRFLGREVKIKL 105
>ref|NP_230290.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||G82297 conserved hypothetical protein VC0641 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF93807.1| (AE004150) conserved hypothetical protein [Vibrio cholerae]
Length = 151
Score = 60.5 bits (145), Expect = 3e-09
Identities = 39/145 (26%), Positives = 76/145 (51%), Gaps = 9/145 (6%)
Query: 1 MTKKIEEKIGGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60
+ +++ E + + + GY L + V+ + LR+ + + NG ++++ C +VS +S +
Sbjct: 4 LERQLTEMLEAPVVAAGYELVGLEFVRAGQHSTLRIFIDHENG-ITVEDCAEVSRQVSAV 62
Query: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLT----NKESFQAVLKDAN 116
LDV D I Y LEVSS GLER L H++ +G +V + L N+ ++ V++ +
Sbjct: 63 LDVEDPISVVYNLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVGNRRKWKGVIQSID 122
Query: 117 D----LSADFELEDHAIKSVEYKDL 137
+ D + E A+ ++ +L
Sbjct: 123 GETVAVMVDGQEEHFALSNISKANL 147
>sp|P03843|YHBC_ECOLI Hypothetical protein yhbC
emb|CAA25199.1| (X00513) 15 kd protein [Escherichia coli]
Length = 140
Score = 60.1 bits (144), Expect = 4e-09
Identities = 38/105 (36%), Positives = 62/105 (58%), Gaps = 6/105 (5%)
Query: 13 IESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPLLDVCDFIQDAYI 72
+E+LG+ L + ++ LR+ + + +G +++D C VS +S +LDV D I AY
Sbjct: 6 VEALGFELVGIEFIR-GRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVEDPITVAYN 63
Query: 73 LEVSSMGLERTLKTPKHFKLSLGEKVEVKL----TNKESFQAVLK 113
LEVSS GL+R L T +H+ +GE+V + L N+ +Q V+K
Sbjct: 64 LEVSSPGLDRPLFTAEHYARFVGEEVTLVLRMAVQNRRKWQGVIK 108
>ref|NP_353125.1| (NC_003062) AGR_C_138p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_530799.1| (NC_003304) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAK85910.1| (AE007950) AGR_C_138p [Agrobacterium tumefaciens str. C58 (Cereon)]
gb|AAL41115.1| (AE008983) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 198
Score = 60.1 bits (144), Expect = 4e-09
Identities = 41/127 (32%), Positives = 71/127 (55%), Gaps = 7/127 (5%)
Query: 3 KKIEEKIGGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPLLD 62
++I E I V+ +GYLL V L +N L+V + +G +++ C+ +S ISP+LD
Sbjct: 18 QRIAEIIEPVLTGMGYLLVRVRLSNQNGM-TLQVMAEREDGTMNVQDCEAISMAISPVLD 76
Query: 63 VCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVK----LTNKESFQAVLKDANDL 118
V D ++ AY LEVSS G++R + F G V+V+ + N++ F+ + + +
Sbjct: 77 VEDPVEKAYHLEVSSPGIDRPMVRKTDFTRWQGHLVKVETSILVENRKRFRGKIVEVD-- 134
Query: 119 SADFELE 125
+ F+LE
Sbjct: 135 ADSFKLE 141
>ref|NP_457670.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
ref|NP_462201.1| (NC_003197) putative cytoplasmic protein [Salmonella typhimurium
LT2]
gb|AAL22160.1| (AE008851) putative cytoplasmic protein [Salmonella typhimurium
LT2]
emb|CAD07808.1| (AL627278) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 140
Score = 58.9 bits (141), Expect = 9e-09
Identities = 37/105 (35%), Positives = 60/105 (56%), Gaps = 6/105 (5%)
Query: 13 IESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPLLDVCDFIQDAYI 72
+E+LGY L + ++ LR+ + + +G +++D C VS +S +LDV D I AY
Sbjct: 6 VEALGYELVGIEFIR-GRTSTLRIYIDSEDG-INVDDCADVSHQVSAVLDVEDPISVAYN 63
Query: 73 LEVSSMGLERTLKTPKHFKLSLGEKVEVKL----TNKESFQAVLK 113
LEVSS GL+R + T H+ GE+V + L N+ +Q ++K
Sbjct: 64 LEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRKWQGIIK 108
>ref|NP_540885.1| (NC_003317) protein associated with nus operon [Brucella
melitensis]
gb|AAL53149.1| (AE009630) protein associated with nus operon [Brucella melitensis]
Length = 219
Score = 57.8 bits (138), Expect = 2e-08
Identities = 37/107 (34%), Positives = 60/107 (55%), Gaps = 7/107 (6%)
Query: 5 IEEKIGGVIE----SLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60
I+ K+ G++E +LG+ L V L N Q L++ + P+G +++D C+ VS ++P+
Sbjct: 27 IDAKVAGIVEPVINTLGFRLVRVRLSGLNGQ-TLQIMAERPDGTMTVDDCELVSRTVAPV 85
Query: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGE--KVEVKLTNK 105
LDV D I Y LE+SS G++R L F G KVE + ++
Sbjct: 86 LDVEDPISGKYHLEISSPGIDRPLVRKSDFSDWAGHIAKVETSIVHE 132
>ref|NP_487868.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB75527.1| (AP003594) ORF_ID:alr3828~hypothetical protein [Nostoc sp. PCC
7120]
Length = 153
Score = 57.8 bits (138), Expect = 2e-08
Identities = 29/79 (36%), Positives = 42/79 (52%)
Query: 12 VIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPLLDVCDFIQDAY 71
V E LG + + VLR+ ++NP LD C+++S + LD + I DAY
Sbjct: 16 VAEQLGLEVVGIVFHTNQRPPVLRIDIRNPQQDTGLDDCERMSRALEAALDATEIIPDAY 75
Query: 72 ILEVSSMGLERTLKTPKHF 90
+LEVSS G+ R L T + F
Sbjct: 76 VLEVSSPGISRQLVTDREF 94
>ref|NP_470694.1| (NC_003212) conserved hypothetical protein, similar to B. subtilis
YlxS protein [Listeria innocua]
emb|CAC96589.1| (AL596168) conserved hypothetical protein, similar to B. subtilis
YlxS protein [Listeria innocua]
Length = 155
Score = 57.4 bits (137), Expect = 3e-08
Identities = 34/98 (34%), Positives = 54/98 (54%), Gaps = 1/98 (1%)
Query: 3 KKIEEKIGGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPLLD 62
+++E + + + L L D++ KE LR+ + + +G V +D C VSE +S +D
Sbjct: 6 EQVEAIVAPITDELQLELVDIAFEKEGPNWFLRIFI-DKDGGVDIDECAAVSEKVSEKMD 64
Query: 63 VCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEV 100
D I Y LEVSS G ER LK + F+ ++G+ V V
Sbjct: 65 ESDPITQNYFLEVSSPGAERPLKKEQDFENAVGKYVHV 102
>ref|NP_245698.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK02845.1| (AE006113) unknown [Pasteurella multocida]
Length = 177
Score = 56.6 bits (135), Expect = 4e-08
Identities = 33/102 (32%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 1 MTKKIEEKIGGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60
+ +K++E + +E LG L+ + + +R+ + + G V+++ C VS +S +
Sbjct: 30 LEQKLQELLQSSVEDLGCELWGIECQRAGRYLTVRLYI-DKEGGVTVEDCADVSRQVSAI 88
Query: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKL 102
LDV D I D Y LEVSS GL+R L T ++ +G+++ V L
Sbjct: 89 LDVEDPIADKYNLEVSSPGLDRALFTLDQYQRYIGQEIVVHL 130
>ref|NP_106195.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB51981.1| (AP003006) hypothetical protein [Mesorhizobium loti]
Length = 215
Score = 54.7 bits (130), Expect = 2e-07
Identities = 33/110 (30%), Positives = 62/110 (56%), Gaps = 5/110 (4%)
Query: 12 VIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPLLDVCDFIQDAY 71
V+ +G+ L V L +N L++ + +G ++++ C++VS +SP LDV D I+ AY
Sbjct: 29 VLRGIGFRLVRVHLSGQNGL-TLQIMAEREDGTMTVEDCEEVSRAVSPALDVDDPIEKAY 87
Query: 72 ILEVSSMGLERTLKTPKHFKLSLGEKVEVK----LTNKESFQAVLKDAND 117
LEVSS G++R L F G V+++ + +++ F+ + +A +
Sbjct: 88 HLEVSSPGIDRPLVRKSDFVTWTGHLVKMETSVIVADRKRFKGKIAEAGE 137
>ref|NP_464846.1| (NC_003210) conserved hypothetical protein, similar to B. subtilis
YlxS protein [Listeria monocytogenes EGD-e]
emb|CAC99399.1| (AL591978) conserved hypothetical protein, similar to B. subtilis
YlxS protein [Listeria monocytogenes]
Length = 155
Score = 54.3 bits (129), Expect = 2e-07
Identities = 33/98 (33%), Positives = 53/98 (53%), Gaps = 1/98 (1%)
Query: 3 KKIEEKIGGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPLLD 62
+++E + + + L L D++ KE LR+ + + +G V +D C VSE +S +D
Sbjct: 6 EQVEAIVAPITDELQLELVDIAFEKEGPNWFLRIFI-DKDGGVDIDECAAVSEKVSEKMD 64
Query: 63 VCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEV 100
D I Y LEVSS G ER LK + F+ ++ + V V
Sbjct: 65 ENDPITQNYFLEVSSPGAERPLKKEQDFENAVSKYVHV 102
>ref|NP_266919.1| (NC_002662) conserved hypothetical protein [Lactococcus lactis
subsp. lactis]
gb|AAK04861.1|AE006310_3 (AE006310) conserved hypothetical protein [Lactococcus lactis
subsp. lactis]
Length = 157
Score = 53.9 bits (128), Expect = 3e-07
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 38 LKNPNGAVSLDICQQVSEIISPLLDVCD---FIQDAYILEVSSMGLERTLKTPKHFKLSL 94
L + G + +D ++SEIISPLLD F + Y+LEV+S G ER L+ +HF ++
Sbjct: 39 LVDKEGGIEIDETAELSEIISPLLDTISPDPFPTEGYLLEVASPGAERPLRKAEHFAGAV 98
Query: 95 GEKVEVKLTNK 105
GE + VKL K
Sbjct: 99 GEYIFVKLYQK 109
>ref|NP_637863.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM41787.1| (AE012362) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 196
Score = 53.9 bits (128), Expect = 3e-07
Identities = 43/154 (27%), Positives = 74/154 (47%), Gaps = 12/154 (7%)
Query: 4 KIEEKIGGVIESLGYLLYDVSLVKENEQHVLRVSL-----KNPNGAVSLDICQQVSEIIS 58
+I +G +ESLG L V + LR+ + + P+ +++D C++VS +S
Sbjct: 7 EIANLLGPTVESLGLELLGVEYLPAPGGATLRLYIDVPLAEQPDRIINVDDCERVSREVS 66
Query: 59 PLLDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKL----TNKESFQA--VL 112
LDV D I Y LEVSS G++R L T F +GE ++ L + FQ V
Sbjct: 67 AQLDVEDPISGNYTLEVSSPGVDRPLFTLDQFARHVGESAKIVLKLAQDGRRRFQGQIVR 126
Query: 113 KDANDLSADFELEDHAIKSVEYKDLKKVKTLFEW 146
D + F ++ ++ + + ++ K + L +W
Sbjct: 127 IDTEAAAVVFSVDGKDVQ-IGFDNIDKARILPDW 159
>ref|NP_439434.1| (NC_000907) conserved hypothetical protein [Haemophilus influenzae
Rd]
sp|P45138|YHBC_HAEIN Hypothetical protein HI1282
pir||I64169 hypothetical protein HI1282 - Haemophilus influenzae (strain Rd
KW20)
gb|AAC22931.1| (U32808) conserved hypothetical protein [Haemophilus influenzae Rd]
Length = 141
Score = 53.5 bits (127), Expect = 4e-07
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 13 IESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPLLDVCDFIQDAYI 72
+E LG L+ + + +R+ + + +G V++D C VS +S +LDV D I D Y
Sbjct: 6 VEDLGCELWGIECQRVGRFMTVRLFI-DKDGGVTVDDCADVSRQVSAILDVEDPIADKYN 64
Query: 73 LEVSSMGLERTLKTPKHFKLSLGEKVEVKL 102
LEVSS GL+R L T F+ +G+ + V L
Sbjct: 65 LEVSSPGLDRPLFTLPQFERYIGQDIAVHL 94
>ref|NP_360455.1| (NC_003103) unknown [Rickettsia conorii]
gb|AAL03356.1| (AE008637) unknown [Rickettsia conorii]
Length = 161
Score = 53.1 bits (126), Expect = 5e-07
Identities = 38/102 (37%), Positives = 61/102 (59%), Gaps = 4/102 (3%)
Query: 5 IEEKIGGVIE-SLGYLLYDVSLVKEN--EQHVLRVSLKNPNGA-VSLDICQQVSEIISPL 60
IE++I VIE SL + +++ LVK V+ + + + N +S++ C + S IS +
Sbjct: 4 IEQQIANVIEESLTDMGFELVLVKFKGVNPKVVEILIDSLNSEKISVEDCTKASRTISAI 63
Query: 61 LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKL 102
LDV D I+ AY LEV+S GLER L +++ L +V++KL
Sbjct: 64 LDVEDLIEAAYSLEVASSGLERPLVKFENYNRFLEREVKIKL 105
>ref|NP_643000.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM37536.1| (AE011908) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 196
Score = 52.8 bits (125), Expect = 6e-07
Identities = 42/154 (27%), Positives = 73/154 (47%), Gaps = 12/154 (7%)
Query: 4 KIEEKIGGVIESLGYLLYDVSLVKENEQHVLRVSL-----KNPNGAVSLDICQQVSEIIS 58
+I + +ESLG L V + LR+ + + P +++D C++VS +S
Sbjct: 7 EIANLLSPTVESLGLELLGVEYLPAPGGATLRLYIDVPLAEQPERVINVDDCERVSREVS 66
Query: 59 PLLDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKL----TNKESFQAVLK- 113
LDV D I Y LEVSS G++R L T + F GE ++ L + FQ +
Sbjct: 67 AQLDVEDPISGNYTLEVSSPGVDRPLFTLEQFARHTGESAKIVLKLAQDGRRRFQGQILR 126
Query: 114 -DANDLSADFELEDHAIKSVEYKDLKKVKTLFEW 146
DA + F ++ ++ + Y ++ K + + +W
Sbjct: 127 IDAEAAAVVFAVDGKDVQ-IGYDNIDKARIVPDW 159
>ref|NP_384342.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
emb|CAC41673.1| (AL591783) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
Length = 205
Score = 52.0 bits (123), Expect = 1e-06
Identities = 29/84 (34%), Positives = 53/84 (62%), Gaps = 1/84 (1%)
Query: 1 MTKKIEEKIGGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60
+ +++ + I V+ +G+ L V + +N L+V + +G ++++ C++VS+ ISP+
Sbjct: 21 LDRRVADIIEPVLVDMGFRLVRVRMSGQNGL-TLQVMTERNDGTMTVEDCEEVSKAISPV 79
Query: 61 LDVCDFIQDAYILEVSSMGLERTL 84
LDV D I AY LEVSS G++R +
Sbjct: 80 LDVEDPIDKAYHLEVSSPGIDRPM 103
>ref|NP_269749.1| (NC_002737) conserved hypothetical protein [Streptococcus pyogenes]
[Streptococcus pyogenes M1 GAS]
ref|NP_607763.1| (NC_003485) conserved hypothetical protein [Streptococcus pyogenes
MGAS8232]
gb|AAK34470.1| (AE006601) conserved hypothetical protein [Streptococcus pyogenes
M1 GAS]
gb|AAL98262.1| (AE010083) conserved hypothetical protein [Streptococcus pyogenes
MGAS8232]
Length = 127
Score = 51.2 bits (121), Expect = 2e-06
Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 19/118 (16%)
Query: 38 LKNPNGAVSLDICQQVSEIISPLLDVCDF--IQDAYILEVSSMGLERTLKTPKHFKLSLG 95
L + G ++++ ++ IISPLLD D + Y+LEVSS GLER LKT K ++G
Sbjct: 10 LVDKEGGITVEDTSDLTNIISPLLDTIDPDPFPNQYMLEVSSPGLERPLKTADSLKAAVG 69
Query: 96 EKVEVKLTNKESFQAVLK-----------DANDLSADF-ELEDHAIKSVEYKDLKKVK 141
+ V L +QA+ K D L+ D+ + H I ++ Y+ + KV+
Sbjct: 70 SYINVSL-----YQAIDKVKVFQGDLLAFDGETLTIDYLDKTRHKIVNIPYQAVAKVR 122
>ref|NP_358071.1| (NC_003098) Conserved hypothetical protein [Streptococcus
pneumoniae R6]
gb|AAK99281.1| (AE008427) Conserved hypothetical protein [Streptococcus pneumoniae
R6]
Length = 159
Score = 50.1 bits (118), Expect = 4e-06
Identities = 42/141 (29%), Positives = 71/141 (49%), Gaps = 10/141 (7%)
Query: 5 IEEKIGGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPLLDVC 64
+ E + VIE+ + L D+ K +L + + P G ++L+ ++EIISP+LD
Sbjct: 11 VREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEIISPVLDTI 68
Query: 65 --DFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLTNKESFQAVLKDANDLSADF 122
D + Y LE++S GLER LKT ++G+ + V L +QA+ K
Sbjct: 69 KPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGL-----YQAIDKQKVFEGTLL 123
Query: 123 ELEDHAIKSVEYKDLKKVKTL 143
E+ + ++EY D + KT+
Sbjct: 124 AFEEDEL-TMEYMDKTRKKTV 143
>ref|NP_345068.1| (NC_003028) conserved hypothetical protein [Streptococcus
pneumoniae TIGR4]
gb|AAK74708.1| (AE007365) conserved hypothetical protein [Streptococcus pneumoniae
TIGR4]
Length = 159
Score = 50.1 bits (118), Expect = 4e-06
Identities = 42/141 (29%), Positives = 71/141 (49%), Gaps = 10/141 (7%)
Query: 5 IEEKIGGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPLLDVC 64
+ E + VIE+ + L D+ K +L + + P G ++L+ ++EIISP+LD
Sbjct: 11 VREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEIISPVLDTI 68
Query: 65 --DFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLTNKESFQAVLKDANDLSADF 122
D + Y LE++S GLER LKT ++G+ + V L +QA+ K
Sbjct: 69 KPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGL-----YQAIDKQKVFEGTLL 123
Query: 123 ELEDHAIKSVEYKDLKKVKTL 143
E+ + ++EY D + KT+
Sbjct: 124 AFEEDEL-TMEYMDKTRKKTV 143
>pdb|1IB8|A Chain A, Solution Structure And Function Of A Conserved Protein
Sp14.3 Encoded By An Essential Streptococcus Pneumoniae
Gene
Length = 164
Score = 48.9 bits (115), Expect = 9e-06
Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 10/141 (7%)
Query: 5 IEEKIGGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPLLDVC 64
+ E + VIE+ + L D+ K +L + + P G ++L+ ++E+ISP+LD
Sbjct: 14 VREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEMISPVLDTI 71
Query: 65 --DFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLTNKESFQAVLKDANDLSADF 122
D + Y LE++S GLER LKT ++G+ + V L +QA+ K
Sbjct: 72 KPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGL-----YQAIDKQKVFEGTLL 126
Query: 123 ELEDHAIKSVEYKDLKKVKTL 143
E+ + ++EY D + KT+
Sbjct: 127 AFEEDEL-TMEYMDKTRKKTV 146
>emb|CAB36567.1| (AL035472) hypothetical protein MLCB596.11 [Mycobacterium leprae]
Length = 122
Score = 48.9 bits (115), Expect = 9e-06
Identities = 26/63 (41%), Positives = 38/63 (60%)
Query: 38 LKNPNGAVSLDICQQVSEIISPLLDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEK 97
L + + ++ DI +S +S LLD D I D Y LEVSS+G+ R + KHF+ + G K
Sbjct: 15 LADGDTVLARDIIATLSHSVSALLDGLDNIVDRYFLEVSSLGMGRPFTSEKHFRRARGRK 74
Query: 98 VEV 100
VE+
Sbjct: 75 VEL 77
>ref|NP_297526.1| (NC_002488) conserved hypothetical protein [Xylella fastidiosa
9a5c]
pir||H82830 conserved hypothetical protein XF0233 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF83046.1|AE003877_1 (AE003877) conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 215
Score = 48.1 bits (113), Expect = 2e-05
Identities = 41/139 (29%), Positives = 63/139 (44%), Gaps = 24/139 (17%)
Query: 13 IESLGYLLYDVSLVKENEQHVLRVSLKNPNGA-----VSLDICQQVSEIISPLLDVCDFI 67
+E+LG+ L + +LR+ + P VS+D C++VS +S LDV + I
Sbjct: 32 VETLGFELLGAEYLLVPSGAILRLYIDTPFAMQPECMVSIDDCERVSREVSAYLDVEEPI 91
Query: 68 QDAYILEVSSMGLERT------------------LKTPKHFKLSLGEKVEVKLTNKESFQ 109
Y LEVSS GL+R LK P+H L K+ V++ + F
Sbjct: 92 SGNYTLEVSSPGLDRRLFTLEQFARHYNQFVKVGLKLPQHGSRRLQGKI-VRVEQVDGFV 150
Query: 110 AVLKDANDLSADFELEDHA 128
+L + +L+ DF D A
Sbjct: 151 VLLVNGVELAVDFNNIDKA 169
>ref|NP_217358.1| (NC_000962) hypothetical protein Rv2842c [Mycobacterium
tuberculosis H37Rv]
ref|NP_337420.1| (NC_002755) conserved hypothetical protein [Mycobacterium
tuberculosis CDC1551]
sp|O05817|YS42_MYCTU Hypothetical protein Rv2842c
pir||E70588 hypothetical protein Rv2842c - Mycobacterium tuberculosis (strain
H37RV)
emb|CAB08448.1| (Z95207) hypothetical protein Rv2842c [Mycobacterium tuberculosis
H37Rv]
gb|AAK47234.1| (AE007115) conserved hypothetical protein [Mycobacterium
tuberculosis CDC1551]
Length = 183
Score = 47.8 bits (112), Expect = 2e-05
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Query: 3 KKIEEKIGGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPLLD 62
+++ E +G GY + DV + + V + + + + LD +S S LLD
Sbjct: 9 RQVIELLGADFACAGYEIEDVVIDARARPPRIAV-IADGDAPLDLDTIAALSRRASALLD 67
Query: 63 VCDF---IQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLTN 104
D I+ Y+LEVSS G+ER L + KHF+ + G KVE+ L++
Sbjct: 68 GLDGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSD 112
>ref|NP_440014.1| (NC_000911) hypothetical protein [Synechocystis sp. PCC 6803]
sp|P72687|Y742_SYNY3 Hypothetical protein slr0742
pir||S74542 hypothetical protein slr0742 - Synechocystis sp. (strain PCC 6803)
dbj|BAA16694.1| (D90899) ORF_ID:slr0742~hypothetical protein [Synechocystis sp. PCC
6803]
Length = 176
Score = 45.4 bits (106), Expect = 1e-04
Identities = 30/99 (30%), Positives = 43/99 (43%)
Query: 12 VIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPLLDVCDFIQDAY 71
+ E LG + D VLR+ ++N SL+ C+ S L+ I AY
Sbjct: 41 IAEDLGLEVTDAVFQTNKRPPVLRIDIRNLQQDTSLNDCEAFSRSFEAQLEESSLIASAY 100
Query: 72 ILEVSSMGLERTLKTPKHFKLSLGEKVEVKLTNKESFQA 110
+LEVSS G+ L T + F G +V V N Q+
Sbjct: 101 VLEVSSPGISPYLATERDFIAFKGFEVVVTSDNPHQGQS 139
>ref|NP_212933.1| (NC_001318) conserved hypothetical protein [Borrelia burgdorferi]
pir||F70199 conserved hypothetical protein BB0799 - Lyme disease spirochete
gb|AAC67155.1| (AE001179) conserved hypothetical protein [Borrelia burgdorferi]
Length = 162
Score = 43.1 bits (100), Expect = 5e-04
Identities = 25/122 (20%), Positives = 68/122 (55%), Gaps = 4/122 (3%)
Query: 20 LYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPLLDVCDFIQDAYILEVSSMG 79
+ ++++ + +++ L + N ++ +D + ++I +L+ ++ + LE+S+ G
Sbjct: 43 ILEINIFRNKNNGKIQIVLYSKNFSLDIDFLTDLHKMILLILEAN--LKYGFTLELSTPG 100
Query: 80 LERTLKTPKHFKLSLGEKVEVKLTNKESFQAVLKDANDLSADFELEDHAIKSVEYKDLKK 139
++R +K+ + FK+ G+K+++ L N E + + ++ S F+ + + +V Y D+KK
Sbjct: 101 IDRKIKSDREFKIFEGKKIKLMLDN-EFEEGFILESKPKSFIFKTDSKEV-NVFYSDVKK 158
Query: 140 VK 141
+
Sbjct: 159 AR 160
>ref|NP_418865.1| (NC_002696) conserved hypothetical protein [Caulobacter crescentus
CB15]
gb|AAK22033.1| (AE005679) conserved hypothetical protein [Caulobacter crescentus
CB15]
Length = 160
Score = 42.0 bits (97), Expect = 0.001
Identities = 29/106 (27%), Positives = 50/106 (46%), Gaps = 10/106 (9%)
Query: 30 EQHVLRVSLKNP------NGAVSLDICQQVSEIISPLLDVCDFIQDAYILEVSSMGLERT 83
EQ L++ ++P G ++++ C ++S +S +LD D I Y LEVSS G++R
Sbjct: 5 EQRRLQIMAEHPLLEDGSGGDMNVEDCAKLSRAVSEVLDAADPIAGEYTLEVSSPGIDRP 64
Query: 84 LKTPKHFKLSLGEKVEVKL----TNKESFQAVLKDANDLSADFELE 125
L K F G + ++L ++ F+ L D +E
Sbjct: 65 LTRLKDFDDYAGLEARIELDRVAEGRKRFKGELAGVEDDQVGLNIE 110
>ref|NP_219328.1| (NC_000919) conserved hypothetical protein [Treponema pallidum]
pir||B71266 conserved hypothetical protein TP0893 - syphilis spirochete
gb|AAC65850.1| (AE001259) conserved hypothetical protein [Treponema pallidum]
Length = 156
Score = 40.0 bits (92), Expect = 0.004
Identities = 34/101 (33%), Positives = 48/101 (46%), Gaps = 10/101 (9%)
Query: 7 EKIGGVIESLGYLLYD----VSLVKENEQHV---LRVSLKNPNGAVSLDICQQVSEIISP 59
E V+ SLG L D VS V Q R + + G V+LD+C +V I+ P
Sbjct: 12 ESCAEVVRSLGCALVDLQWSVSAVSRRVQQAQGRARAVIYSAGG-VTLDVCARVHRILVP 70
Query: 60 LLDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEV 100
L ++ + LEV S G ER ++ F + LGE V+V
Sbjct: 71 RLQALGGVRTVF-LEVGSPG-ERVIRNAAEFSIFLGETVKV 109
>ref|NP_629831.1| (NC_003888) hypothetical protein SC5H4.27 [Streptomyces coelicolor
A3(2)]
emb|CAB91139.1| (AL355913) hypothetical protein SC5H4.27 [Streptomyces coelicolor
A3(2)]
Length = 177
Score = 39.3 bits (90), Expect = 0.007
Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Query: 2 TKKIEEKIGGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPLL 61
++++ E + ++ S G L ++++ + VL V + + GA LD VS +S L
Sbjct: 6 SERLRELLEPLVASQGLDLEEIAVDSVGRRRVLSVVVDSDTGA-DLDRIADVSRALSAKL 64
Query: 62 DVCDFIQDA-YILEVSSMGLERTLKTPKHFKLSLGEKVEVKLTNKESFQAVLKDANDLSA 120
D D + + Y LEV + G ER+L +H+ + V +L A + ++
Sbjct: 65 DETDAMGEGEYTLEVGTPGAERSLTQHRHYVRATDRLVRFQLREGGELVARILAVDEDGL 124
Query: 121 DFEL 124
D E+
Sbjct: 125 DLEV 128
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.315 0.135 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,058,144
Number of Sequences: 1026957
Number of extensions: 2932938
Number of successful extensions: 6781
Number of sequences better than 1.0e-02: 47
Number of HSP's better than 0.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 6733
Number of HSP's gapped (non-prelim): 47
length of query: 146
length of database: 324,149,939
effective HSP length: 122
effective length of query: 24
effective length of database: 198,861,185
effective search space: 4772668440
effective search space used: 4772668440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 89 (38.9 bits)