BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645665|ref|NP_207842.1| hypothetical protein
[Helicobacter pylori 26695]
         (140 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207842.1|  (NC_000915) hypothetical protein [Helicoba...   287  1e-77
ref|NP_223093.1|  (NC_000921) putative [Helicobacter pylori ...   259  3e-69
ref|NP_281344.1|  (NC_002163) hypothetical protein Cj0133 [C...    78  1e-14
ref|NP_325950.1|  (NC_002771) conserved hypothetical protein...    40  0.006

>ref|NP_207842.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||C64651 hypothetical protein HP1051 - Helicobacter pylori (strain 26695)
 gb|AAD08097.1| (AE000612) H. pylori predicted coding region HP1051 [Helicobacter
           pylori 26695]
          Length = 140

 Score =  287 bits (735), Expect = 1e-77
 Identities = 140/140 (100%), Positives = 140/140 (100%)

Query: 1   MYQNNFLCASYTSKSKTSEALVEVFSQLFKDFKNPTLPAIKGVYYAKGPGSFTSLKLTHV 60
           MYQNNFLCASYTSKSKTSEALVEVFSQLFKDFKNPTLPAIKGVYYAKGPGSFTSLKLTHV
Sbjct: 1   MYQNNFLCASYTSKSKTSEALVEVFSQLFKDFKNPTLPAIKGVYYAKGPGSFTSLKLTHV 60

Query: 61  FLHTLALIHDFELYSTIGFDFNDNTPILAYANKYFVSKEMESLSDFKDLKIAPKDFMLPP 120
           FLHTLALIHDFELYSTIGFDFNDNTPILAYANKYFVSKEMESLSDFKDLKIAPKDFMLPP
Sbjct: 61  FLHTLALIHDFELYSTIGFDFNDNTPILAYANKYFVSKEMESLSDFKDLKIAPKDFMLPP 120

Query: 121 FLEKDKFTQLNTPFYILPPI 140
           FLEKDKFTQLNTPFYILPPI
Sbjct: 121 FLEKDKFTQLNTPFYILPPI 140



>ref|NP_223093.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||B71940 hypothetical protein jhp0374 - Helicobacter pylori (strain J99)
 gb|AAD05951.1| (AE001472) putative [Helicobacter pylori J99]
          Length = 165

 Score =  259 bits (663), Expect = 3e-69
 Identities = 130/148 (87%), Positives = 134/148 (89%), Gaps = 8/148 (5%)

Query: 1   MYQNNFLCASYTSKSKTSEALVEVFSQLFKDFKNPT--------LPAIKGVYYAKGPGSF 52
           +YQN+FLC SYTSKSKTSEALV VFSQLF+DFKNPT        LPAIKGVYYAKGPGSF
Sbjct: 18  VYQNDFLCNSYTSKSKTSEALVGVFSQLFEDFKNPTIYPTIYPDLPAIKGVYYAKGPGSF 77

Query: 53  TSLKLTHVFLHTLALIHDFELYSTIGFDFNDNTPILAYANKYFVSKEMESLSDFKDLKIA 112
           TSLKLTHVFLHTLALIHDFELYST GFDFNDNTPILAYANKYFVSKE ESL+DFKDLKI 
Sbjct: 78  TSLKLTHVFLHTLALIHDFELYSTTGFDFNDNTPILAYANKYFVSKERESLTDFKDLKIL 137

Query: 113 PKDFMLPPFLEKDKFTQLNTPFYILPPI 140
           PKDFMLP FLEKDKFTQLNTPFYILPPI
Sbjct: 138 PKDFMLPSFLEKDKFTQLNTPFYILPPI 165



>ref|NP_281344.1| (NC_002163) hypothetical protein Cj0133 [Campylobacter jejuni]
 pir||E81430 hypothetical protein Cj0133 [imported] - Campylobacter jejuni
           (strain NCTC 11168)
 emb|CAB72617.1| (AL139074) hypothetical protein Cj0133 [Campylobacter jejuni]
          Length = 133

 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 47/140 (33%), Positives = 75/140 (53%), Gaps = 10/140 (7%)

Query: 1   MYQNNFLCASYTSKSKTSEALVEVFSQLFKDFKNPTLPAIKGVYYAKGPGSFTSLKLTHV 60
           +YQ++ L  +Y S+ K SE L ++  +L K++   +L       YA GPGS+  +K+++V
Sbjct: 4   IYQDDKLIKTYKSEEKASEFLPKILDELLKEYDFTSL------IYANGPGSYMGIKISYV 57

Query: 61  FLHTLALIHDFELYSTIGFDFNDNTPILAYANKYFVSKEMESLSDFKDLKIAPKDFMLPP 120
            L TL+++ +  L++   F+ N   PI A  N  FV KE E   +    +  P +F LP 
Sbjct: 58  SLSTLSIVKNIPLFAVSAFELNGYKPISANKNFCFVYKEGEICLE----QNIPAEFFLPK 113

Query: 121 FLEKDKFTQLNTPFYILPPI 140
            L++ K    N PFY L  I
Sbjct: 114 NLQELKLNNDNLPFYFLDAI 133



>ref|NP_325950.1| (NC_002771) conserved hypothetical protein [Mycoplasma pulmonis]
 emb|CAC13292.1| (AL445563) conserved hypothetical protein [Mycoplasma pulmonis]
          Length = 180

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 23/81 (28%), Positives = 39/81 (47%), Gaps = 2/81 (2%)

Query: 1  MYQNNFLCASYTSKSKTSEA--LVEVFSQLFKDFKNPTLPAIKGVYYAKGPGSFTSLKLT 58
          +Y  NF   S+    K  +   L+ V        +N ++  IK  Y   GPG FT ++ +
Sbjct: 18 LYDENFKIISFKHIKKVQKKTELIPVEIDAILASQNKSVFDIKAFYITLGPGFFTGIRTS 77

Query: 59 HVFLHTLALIHDFELYSTIGF 79
            ++ TLAL  +F+++S   F
Sbjct: 78 LTYIKTLALFLNFQIFSISSF 98



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.322    0.139    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,892,099
Number of Sequences: 1026957
Number of extensions: 3543808
Number of successful extensions: 7474
Number of sequences better than 1.0e-02: 4
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7469
Number of HSP's gapped (non-prelim): 4
length of query: 140
length of database: 324,149,939
effective HSP length: 116
effective length of query: 24
effective length of database: 205,022,927
effective search space: 4920550248
effective search space used: 4920550248
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 89 (38.9 bits)