BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645667|ref|NP_207844.1| hypothetical protein
[Helicobacter pylori 26695]
(217 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207844.1| (NC_000915) hypothetical protein [Helicoba... 437 e-122
sp|O25693|MINC_HELPY Probable septum site-determining prote... 391 e-108
ref|NP_223091.1| (NC_000921) putative [Helicobacter pylori ... 323 8e-88
ref|NP_228853.1| (NC_000853) septum site-determining protei... 45 7e-04
emb|CAC36355.1| (AJ293306) putative MinC [Burkholderia cepa... 44 0.001
ref|NP_456321.1| (NC_003198) septum site determining protei... 41 0.008
ref|NP_660661.1| (NC_004061) cell division inhibitor MinC [... 41 0.008
ref|NP_240149.1| (NC_002528) cell division inhibitor minC [... 41 0.008
>ref|NP_207844.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||E64651 hypothetical protein HP1053 - Helicobacter pylori (strain 26695)
gb|AAD08105.1| (AE000613) H. pylori predicted coding region HP1053 [Helicobacter
pylori 26695]
Length = 217
Score = 437 bits (1123), Expect = e-122
Identities = 217/217 (100%), Positives = 217/217 (100%)
Query: 1 MDKNQYHRPHRASQTAFNERIVMLKTNQKNVHAFEIEKQEPEAVIGFLEKNHALLQYFLI 60
MDKNQYHRPHRASQTAFNERIVMLKTNQKNVHAFEIEKQEPEAVIGFLEKNHALLQYFLI
Sbjct: 1 MDKNQYHRPHRASQTAFNERIVMLKTNQKNVHAFEIEKQEPEAVIGFLEKNHALLQYFLI 60
Query: 61 IFKYDIESEVKAVLRKHQLLFLETNRVLNGRHIKTMPLKDETDHPKPNHSKTEPKTTIYE 120
IFKYDIESEVKAVLRKHQLLFLETNRVLNGRHIKTMPLKDETDHPKPNHSKTEPKTTIYE
Sbjct: 61 IFKYDIESEVKAVLRKHQLLFLETNRVLNGRHIKTMPLKDETDHPKPNHSKTEPKTTIYE 120
Query: 121 RHIRSGEEIYSTNHLIFLGNIHNGAKIISEGCVSVYGVCEGAIVCFGECLILKEVKSAQI 180
RHIRSGEEIYSTNHLIFLGNIHNGAKIISEGCVSVYGVCEGAIVCFGECLILKEVKSAQI
Sbjct: 121 RHIRSGEEIYSTNHLIFLGNIHNGAKIISEGCVSVYGVCEGAIVCFGECLILKEVKSAQI 180
Query: 181 VFQNKILSLKEVEPLLVNKNIKIITKNDDILDIKEVL 217
VFQNKILSLKEVEPLLVNKNIKIITKNDDILDIKEVL
Sbjct: 181 VFQNKILSLKEVEPLLVNKNIKIITKNDDILDIKEVL 217
>sp|O25693|MINC_HELPY Probable septum site-determining protein minC
Length = 195
Score = 391 bits (1004), Expect = e-108
Identities = 195/195 (100%), Positives = 195/195 (100%)
Query: 23 MLKTNQKNVHAFEIEKQEPEAVIGFLEKNHALLQYFLIIFKYDIESEVKAVLRKHQLLFL 82
MLKTNQKNVHAFEIEKQEPEAVIGFLEKNHALLQYFLIIFKYDIESEVKAVLRKHQLLFL
Sbjct: 1 MLKTNQKNVHAFEIEKQEPEAVIGFLEKNHALLQYFLIIFKYDIESEVKAVLRKHQLLFL 60
Query: 83 ETNRVLNGRHIKTMPLKDETDHPKPNHSKTEPKTTIYERHIRSGEEIYSTNHLIFLGNIH 142
ETNRVLNGRHIKTMPLKDETDHPKPNHSKTEPKTTIYERHIRSGEEIYSTNHLIFLGNIH
Sbjct: 61 ETNRVLNGRHIKTMPLKDETDHPKPNHSKTEPKTTIYERHIRSGEEIYSTNHLIFLGNIH 120
Query: 143 NGAKIISEGCVSVYGVCEGAIVCFGECLILKEVKSAQIVFQNKILSLKEVEPLLVNKNIK 202
NGAKIISEGCVSVYGVCEGAIVCFGECLILKEVKSAQIVFQNKILSLKEVEPLLVNKNIK
Sbjct: 121 NGAKIISEGCVSVYGVCEGAIVCFGECLILKEVKSAQIVFQNKILSLKEVEPLLVNKNIK 180
Query: 203 IITKNDDILDIKEVL 217
IITKNDDILDIKEVL
Sbjct: 181 IITKNDDILDIKEVL 195
>ref|NP_223091.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZM51|MINC_HELPJ Probable septum site-determining protein minC
pir||H71939 hypothetical protein jhp0372 - Helicobacter pylori (strain J99)
gb|AAD05953.1| (AE001472) putative [Helicobacter pylori J99]
Length = 194
Score = 323 bits (828), Expect = 8e-88
Identities = 171/195 (87%), Positives = 177/195 (90%), Gaps = 1/195 (0%)
Query: 23 MLKTNQKNVHAFEIEKQEPEAVIGFLEKNHALLQYFLIIFKYDIESEVKAVLRKHQLLFL 82
MLKTNQKNVHAFEIEKQEPEAV+ FLEKNHALLQYFLIIFKYDIESEVKAVL KHQLLFL
Sbjct: 1 MLKTNQKNVHAFEIEKQEPEAVMEFLEKNHALLQYFLIIFKYDIESEVKAVLHKHQLLFL 60
Query: 83 ETNRVLNGRHIKTMPLKDETDHPKPNHSKTEPKTTIYERHIRSGEEIYSTNHLIFLGNIH 142
ETNR LNGR+IKT KD + + + EPKTTIYER+IRSGEEIYSTNHLIFLGNIH
Sbjct: 61 ETNRALNGRYIKTTE-KDANLLKQNSPNAIEPKTTIYERNIRSGEEIYSTNHLIFLGNIH 119
Query: 143 NGAKIISEGCVSVYGVCEGAIVCFGECLILKEVKSAQIVFQNKILSLKEVEPLLVNKNIK 202
NGAKIISEG VSVYGVCEGAIVCFGE LILKEVKSAQIVFQNKILSLKEVE LLVNKNIK
Sbjct: 120 NGAKIISEGSVSVYGVCEGAIVCFGEYLILKEVKSAQIVFQNKILSLKEVERLLVNKNIK 179
Query: 203 IITKNDDILDIKEVL 217
IITKNDDILDIKEVL
Sbjct: 180 IITKNDDILDIKEVL 194
>ref|NP_228853.1| (NC_000853) septum site-determining protein MinC, putative
[Thermotoga maritima]
sp|Q9X0D7|MINC_THEMA Probable septum site-determining protein minC
pir||A72301 hypothetical protein TM1047 - Thermotoga maritima (strain MSB8)
pdb|1HF2|B Chain B, Crystal Structure Of The Bacterial Cell-Division Inhibitor
Minc From T. Maritima
pdb|1HF2|C Chain C, Crystal Structure Of The Bacterial Cell-Division Inhibitor
Minc From T. Maritima
pdb|1HF2|A Chain A, Crystal Structure Of The Bacterial Cell-Division Inhibitor
Minc From T. Maritima
pdb|1HF2|D Chain D, Crystal Structure Of The Bacterial Cell-Division Inhibitor
Minc From T. Maritima
gb|AAD36124.1|AE001765_3 (AE001765) septum site-determining protein MinC, putative
[Thermotoga maritima]
Length = 210
Score = 44.7 bits (104), Expect = 7e-04
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 80 LFLETNRVLNGRHIKTMPLKDETDHPKPNHSKTEPKTTIYERHIRSGEEIYSTNHLIFLG 139
L LE +++L G ++ E D + + E + +R+IRSG+ + + +I G
Sbjct: 69 LGLEVSQILVGSTVEGK----ENDLKVQSRTTVESTGKVIKRNIRSGQTVVHSGDVIVFG 124
Query: 140 NIHNGAKIISEGCVSVYGVCEGAI 163
N++ GA+I++ G V V+G +G I
Sbjct: 125 NVNKGAEILAGGSVVVFGKAQGNI 148
>emb|CAC36355.1| (AJ293306) putative MinC [Burkholderia cepacia]
Length = 186
Score = 44.3 bits (103), Expect = 0.001
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 97 PLKDETDHPKPNHSKTEPKTTIYERHIRSGEEIYSTNHLIFLGNIHNGAKIISEGCVSVY 156
P + T P +T + +R +RSG++IY+ L+ L + +GA+II+EG + +Y
Sbjct: 59 PAAEPTPEPGAASQPAGVQTLVIDRPLRSGQQIYAKGDLVVLAPVSHGAEIIAEGNIHIY 118
Query: 157 GVCEG 161
G
Sbjct: 119 APLRG 123
>ref|NP_456321.1| (NC_003198) septum site determining protein [Salmonella enterica
subsp. enterica serovar Typhi]
ref|NP_460770.1| (NC_003197) cell division inhibitor; activated MinC inhibits FtsZ
ring formation [Salmonella typhimurium LT2]
gb|AAL20729.1| (AE008780) cell division inhibitor; activated MinC inhibits FtsZ
ring formation [Salmonella typhimurium LT2]
emb|CAD05497.1| (AL627272) septum site determining protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 235
Score = 41.2 bits (95), Expect = 0.008
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 93 IKTMPLKDETDHPKPNHSKTEPKTTIYERHIRSGEEIYSTN-HLIFLGNIHNGAKIISEG 151
++ P++ T P ++ KT + + +RSG+ IY+ LI ++ GA++I++G
Sbjct: 106 VRPAPVEPATPSEPPQNANPITKTRLIDVPVRSGQRIYAPQCDLIVTSHVSAGAELIADG 165
Query: 152 CVSVYGVCEG 161
+ VYG+ G
Sbjct: 166 NIHVYGMMRG 175
>ref|NP_660661.1| (NC_004061) cell division inhibitor MinC [Buchnera aphidicola str.
Sg (Schizaphis graminum)]
gb|AAM67872.1| (AE014108) cell division inhibitor MinC [Buchnera aphidicola str.
Sg (Schizaphis graminum)]
Length = 242
Score = 41.2 bits (95), Expect = 0.008
Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 6/99 (6%)
Query: 71 KAVLRKHQLLFLETNRVLNGRHIK----TMPLKDETDHPKPNHSKTEPKTTIYERHIRSG 126
K ++ + LE+N + ++ T LK + + K E KT I +RSG
Sbjct: 88 KIIVESGLPVLLESNTTNTNKDLRSFYHTSTLKKTKNEQRLRVKKIE-KTHIINTPVRSG 146
Query: 127 EEIYST-NHLIFLGNIHNGAKIISEGCVSVYGVCEGAIV 164
++IY+ + L+ + N+ GA+++++G + VYG G ++
Sbjct: 147 QKIYAKYSDLVVINNVSAGAELVADGNIHVYGSVRGRVL 185
>ref|NP_240149.1| (NC_002528) cell division inhibitor minC [Buchnera sp. APS]
sp|P57412|MINC_BUCAI Probable septum site-determining protein minC
dbj|BAB13035.1| (AP001119) cell division inhibitor minC [Buchnera sp. APS]
Length = 237
Score = 41.2 bits (95), Expect = 0.008
Identities = 18/51 (35%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 115 KTTIYERHIRSGEEIYSTN-HLIFLGNIHNGAKIISEGCVSVYGVCEGAIV 164
KT I + +RSG++IY+ + LI + N+ GA+++++G + VYG+ G ++
Sbjct: 130 KTHIIDIPVRSGQKIYAKHADLIVINNVSAGAELVADGNIHVYGIVRGRVL 180
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.320 0.138 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,165,934
Number of Sequences: 1026957
Number of extensions: 5340150
Number of successful extensions: 12442
Number of sequences better than 1.0e-02: 8
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 12431
Number of HSP's gapped (non-prelim): 10
length of query: 217
length of database: 324,149,939
effective HSP length: 116
effective length of query: 101
effective length of database: 205,022,927
effective search space: 20707315627
effective search space used: 20707315627
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 95 (41.2 bits)