BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645668|ref|NP_207845.1| hypothetical protein
[Helicobacter pylori 26695]
(422 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207845.1| (NC_000915) hypothetical protein [Helicoba... 842 0.0
ref|NP_223090.1| (NC_000921) putative [Helicobacter pylori ... 755 0.0
ref|NP_281342.1| (NC_002163) putative periplasmic protein [... 149 8e-35
ref|NP_214195.1| (NC_000918) hypothetical protein [Aquifex ... 70 4e-11
ref|NP_214447.1| (NC_000918) putative protein [Aquifex aeol... 45 0.002
ref|NP_623550.1| (NC_003869) Membrane proteins related to m... 43 0.008
>ref|NP_207845.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64651 hypothetical protein HP1054 - Helicobacter pylori (strain 26695)
gb|AAD08106.1| (AE000613) H. pylori predicted coding region HP1054 [Helicobacter
pylori 26695]
Length = 422
Score = 842 bits (2175), Expect = 0.0
Identities = 422/422 (100%), Positives = 422/422 (100%)
Query: 1 MIFNALITKPRALSFSLNSKEGALNDNDGTLFWDLKKPIKIKIVAPKGIKRYDLKVTTQD 60
MIFNALITKPRALSFSLNSKEGALNDNDGTLFWDLKKPIKIKIVAPKGIKRYDLKVTTQD
Sbjct: 1 MIFNALITKPRALSFSLNSKEGALNDNDGTLFWDLKKPIKIKIVAPKGIKRYDLKVTTQD 60
Query: 61 NLILYEKENLVLDKPKSLEVPLTRPEIMGLEDKCLLYEIKANDWSYANFFNGNKASFKQE 120
NLILYEKENLVLDKPKSLEVPLTRPEIMGLEDKCLLYEIKANDWSYANFFNGNKASFKQE
Sbjct: 61 NLILYEKENLVLDKPKSLEVPLTRPEIMGLEDKCLLYEIKANDWSYANFFNGNKASFKQE 120
Query: 121 VCVDTIKPSITILSRSPSIAYGGSAIVVFEALDKNLSQAFVRVKKKDFEAFRLLEFKQRN 180
VCVDTIKPSITILSRSPSIAYGGSAIVVFEALDKNLSQAFVRVKKKDFEAFRLLEFKQRN
Sbjct: 121 VCVDTIKPSITILSRSPSIAYGGSAIVVFEALDKNLSQAFVRVKKKDFEAFRLLEFKQRN 180
Query: 181 VFIALVPWSYKNKDFKAFIVAKDKAYNFNTAPLLFKRKIHRLREKDIDLSALKDKIAKQE 240
VFIALVPWSYKNKDFKAFIVAKDKAYNFNTAPLLFKRKIHRLREKDIDLSALKDKIAKQE
Sbjct: 181 VFIALVPWSYKNKDFKAFIVAKDKAYNFNTAPLLFKRKIHRLREKDIDLSALKDKIAKQE 240
Query: 241 KFQNDTEQALLERFSNARPKDLEKIQKIALEQGDFYKDFSHFQALKPLNGPFKMASNFLE 300
KFQNDTEQALLERFSNARPKDLEKIQKIALEQGDFYKDFSHFQALKPLNGPFKMASNFLE
Sbjct: 241 KFQNDTEQALLERFSNARPKDLEKIQKIALEQGDFYKDFSHFQALKPLNGPFKMASNFLE 300
Query: 301 NRRILKNNQVLFKFLHLGVDLIPGKDLSLAFDLSVKRVFKGEFDFYGNSLIHCYGLGLCV 360
NRRILKNNQVLFKFLHLGVDLIPGKDLSLAFDLSVKRVFKGEFDFYGNSLIHCYGLGLCV
Sbjct: 301 NRRILKNNQVLFKFLHLGVDLIPGKDLSLAFDLSVKRVFKGEFDFYGNSLIHCYGLGLCV 360
Query: 361 FLAHLKDDKSVGSSGLKLGSGLHLGMLLQGVFVRPNEWLNEQWIKTNITAPIEQAKRLLM 420
FLAHLKDDKSVGSSGLKLGSGLHLGMLLQGVFVRPNEWLNEQWIKTNITAPIEQAKRLLM
Sbjct: 361 FLAHLKDDKSVGSSGLKLGSGLHLGMLLQGVFVRPNEWLNEQWIKTNITAPIEQAKRLLM 420
Query: 421 KG 422
KG
Sbjct: 421 KG 422
>ref|NP_223090.1| (NC_000921) putative [Helicobacter pylori J99]
pir||G71939 hypothetical protein jhp0371 - Helicobacter pylori (strain J99)
gb|AAD05954.1| (AE001472) putative [Helicobacter pylori J99]
Length = 440
Score = 755 bits (1949), Expect = 0.0
Identities = 377/422 (89%), Positives = 397/422 (93%)
Query: 1 MIFNALITKPRALSFSLNSKEGALNDNDGTLFWDLKKPIKIKIVAPKGIKRYDLKVTTQD 60
+IFNA ITKPRALSFSL S+E ALNDN+ LFWDLKKPIK+KIVAPKGIKRY++KVTT+D
Sbjct: 19 LIFNAFITKPRALSFSLKSEENALNDNNEALFWDLKKPIKVKIVAPKGIKRYEIKVTTKD 78
Query: 61 NLILYEKENLVLDKPKSLEVPLTRPEIMGLEDKCLLYEIKANDWSYANFFNGNKASFKQE 120
NLILYEKE+LVLDKPKSLEVPL RPEIMGLE KCL YE +A+DWSYANFFNGNKASFKQE
Sbjct: 79 NLILYEKESLVLDKPKSLEVPLIRPEIMGLEGKCLDYEFQASDWSYANFFNGNKASFKQE 138
Query: 121 VCVDTIKPSITILSRSPSIAYGGSAIVVFEALDKNLSQAFVRVKKKDFEAFRLLEFKQRN 180
VC+DTIKPSI ILSRSPSIAYGGSAIV+FEALDKNLSQAFVRVKKKDF+AFRLLEFKQRN
Sbjct: 139 VCIDTIKPSIVILSRSPSIAYGGSAIVIFEALDKNLSQAFVRVKKKDFKAFRLLEFKQRN 198
Query: 181 VFIALVPWSYKNKDFKAFIVAKDKAYNFNTAPLLFKRKIHRLREKDIDLSALKDKIAKQE 240
VFIALVPWSY+NKDFKAFIVAKDKAYN NT PLLFKRK HRLRE+DI+LSALKDKIAKQE
Sbjct: 199 VFIALVPWSYENKDFKAFIVAKDKAYNSNTTPLLFKRKTHRLRERDINLSALKDKIAKQE 258
Query: 241 KFQNDTEQALLERFSNARPKDLEKIQKIALEQGDFYKDFSHFQALKPLNGPFKMASNFLE 300
KFQN TEQ LLE FSNAR KDLEKIQKIALEQGDF KDFSHFQALKPLNGPFKM SNFLE
Sbjct: 259 KFQNHTEQTLLEMFSNARLKDLEKIQKIALEQGDFDKDFSHFQALKPLNGPFKMTSNFLE 318
Query: 301 NRRILKNNQVLFKFLHLGVDLIPGKDLSLAFDLSVKRVFKGEFDFYGNSLIHCYGLGLCV 360
NRR LK+NQVLFKFLHLGVDL+P KDLSLAFD SVKRVFKGE DFYGNSLI+CYGLGLCV
Sbjct: 319 NRRFLKDNQVLFKFLHLGVDLMPSKDLSLAFDPSVKRVFKGELDFYGNSLINCYGLGLCV 378
Query: 361 FLAHLKDDKSVGSSGLKLGSGLHLGMLLQGVFVRPNEWLNEQWIKTNITAPIEQAKRLLM 420
FLAHLKDD+SVGSSGLKLG GLHLGMLLQGVFVRPNEWLNEQWIKTNI APIEQAKRLLM
Sbjct: 379 FLAHLKDDESVGSSGLKLGIGLHLGMLLQGVFVRPNEWLNEQWIKTNIIAPIEQAKRLLM 438
Query: 421 KG 422
KG
Sbjct: 439 KG 440
>ref|NP_281342.1| (NC_002163) putative periplasmic protein [Campylobacter jejuni]
pir||C81430 probable periplasmic protein Cj0131 [imported] - Campylobacter
jejuni (strain NCTC 11168)
emb|CAB72615.1| (AL139074) putative periplasmic protein [Campylobacter jejuni]
Length = 457
Score = 149 bits (375), Expect = 8e-35
Identities = 116/418 (27%), Positives = 200/418 (47%), Gaps = 35/418 (8%)
Query: 31 LFWDLKKPIKIKIVAPKG-IKRYDLKVTTQDNLILYEKENLVLDKPKSLEVPLTRPEIMG 89
++ DLKKPI + I + IK + + DN + + K + + + P+
Sbjct: 44 VYTDLKKPILVHIKDDESSIKNVQIILHKDDNTSAMVIADEKISNLKDITLQVALPKFGY 103
Query: 90 LED-KCLLYEIKANDWSYANFFNGNKASFKQEVCVDTIKPSITILSRSPSIAYGGSAIVV 148
E+ K + E+ A D S+ NFF+GN+A + V VD P I I+S S I GG+ VV
Sbjct: 104 KENVKSFVLEVIAKDSSFWNFFSGNEARKQIAVLVDNTAPKINIISNSYQIEQGGAGAVV 163
Query: 149 FEALDKNLSQAFVRVKKKDFEAFRLLEFKQRNVFIALVPWSYKNKDFKAFIVAKDKAYNF 208
F+A D NL + ++ K + F+ + + + AL+ W ++++F+AF++A DKA N
Sbjct: 164 FKADDANLDKVYIETNKG--KIFKATPYVKEGYYAALIAWDARDEEFRAFVIATDKAGNI 221
Query: 209 NTAPLLFKRKIHRLREKDIDLS---------ALKDKIAKQEKFQNDTE--QALLERFSNA 257
+ + + + R +I+L+ L ++ A ++ N E + + E N+
Sbjct: 222 SKERIRYYFVNRKYRVSNINLTDKFLDGKIENLANQYAPKDNNLNRYEKFKFVNETLRNS 281
Query: 258 RPKDLEKI-QKIALEQGDFYKDFSHFQALKPLNGPFKMASNFLENRRILKNNQVLFKFLH 316
K + +I K+ E+ D + D + F LK NG ++F ++R N Q + H
Sbjct: 282 NEKLIHEITSKVPEEKIDNF-DLNLFLPLK--NG--MKVADFADHRYYSYNGQFVSDSYH 336
Query: 317 LGVDLIPGKDLSLAFDLSVKRVFKGEFDFYGNSLIHCYGLGLCVFLAHLKDDK------- 369
+G+DL + + + K VF E YG +LI +G G+ H
Sbjct: 337 MGLDLASVAQAPIISNNAGKVVFAAENGIYGLNLIVYHGFGVYSLYGHCSSKNVDLDEMI 396
Query: 370 -------SVGSSGLKLGSGLHLGMLLQGVFVRPNEWLNEQWIKTNITAPIEQAKRLLM 420
G+SGL LG LH G+L+QGV RP +W +++WI+ NI + K++++
Sbjct: 397 NKQSIIGKTGTSGLALGDHLHFGVLVQGVETRPEQWQDKKWIENNIYNVLNDGKKIIL 454
>ref|NP_214195.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
pir||C70450 conserved hypothetical protein aq_1743 - Aquifex aeolicus
gb|AAC07601.1| (AE000754) hypothetical protein [Aquifex aeolicus]
Length = 425
Score = 70.5 bits (171), Expect = 4e-11
Identities = 81/319 (25%), Positives = 138/319 (42%), Gaps = 40/319 (12%)
Query: 123 VDTIKPSITILSRSPSIAYGGSAIV---VFEALDKNLSQAFVRVKKKDFEAFRLLEFKQR 179
+D P + ++ ++ GGS V V E D LS VK F +++
Sbjct: 118 IDYTPPLVNVVFSPYAVMNGGSGAVRVSVSEESDLKLS-----VKDLIFPFYKIAG---- 168
Query: 180 NVFIAL--VPWSYKNKDFKAFIVAKDKAYNFNTA--PLLFKRKIH-----RLREKDIDLS 230
N + +L VP + D I+AKDK N + P+ ++K + L+ ++ L
Sbjct: 169 NTYFSLFGVPIDFSPSD-SIKIIAKDKVGNESVVLVPVRIRQKHYPVYKIELKGREKVLI 227
Query: 231 ALKDKIAKQEKFQNDTEQALLERFSNARPKDLEKIQKIALEQGDFYKDFSHFQALKPLNG 290
+ +E +++ QA + + R ++ EKI +I + + F LK
Sbjct: 228 PKLSSLLGEEINKSNFIQAFKKVNEDLRRENEEKISEIGKKSEERIYWSGKFLQLKNS-- 285
Query: 291 PFKMASNFLENRRILKNNQVLFKFLHLGVDLIPGKDLSLAFDLSVKRVFKGEFDFYGNSL 350
K+ S + E R + + H G DL K+ + S + VF G YGN++
Sbjct: 286 --KVVSLYGEKRIYTYGGKQISTSYHWGYDLASVKNSPVEASNSGRVVFTGFLGIYGNTV 343
Query: 351 IHCYGLGLCVFLAHL-----------KDDKSVG---SSGLKLGSGLHLGMLLQGVFVRPN 396
I +G GL +HL K + +G ++GL G LH G+++ G+ V P
Sbjct: 344 IIDHGYGLMSIYSHLAEFRVKEGDIVKKGQIIGVTDTTGLAFGDHLHFGIMINGLPVNPI 403
Query: 397 EWLNEQWIKTNITAPIEQA 415
EW +++WIK NI I+ +
Sbjct: 404 EWWDKKWIKNNILPAIQSS 422
>ref|NP_214447.1| (NC_000918) putative protein [Aquifex aeolicus]
pir||B70481 hypothetical protein aq_2113 - Aquifex aeolicus
gb|AAC07844.1| (AE000773) putative protein [Aquifex aeolicus]
Length = 258
Score = 44.7 bits (104), Expect = 0.002
Identities = 60/204 (29%), Positives = 83/204 (40%), Gaps = 27/204 (13%)
Query: 207 NFNTAPLLFKRKIHRLREKDIDLSALKDKIAKQEKFQNDTEQALLERFSNARPKDLEKIQ 266
N A L KR + +K I +S + K+ + L+ R R K L K+
Sbjct: 60 NGKNALLEVKRGSKIIFKKRIKISRKRFKVYTLRIRKRKLTPKLIRRIKKEREKIL-KVL 118
Query: 267 KIALEQGDFYKDFSHFQALKPLNGPFKMASNFLENRRILKNNQVLFKFLHLGVDLIPGKD 326
K G S + KPLN + S F E R I K +H GVD K+
Sbjct: 119 KTPTIPG-----ISRLELSKPLN-KLVVTSEFGEIRLINGKR----KSVHRGVDF-RAKE 167
Query: 327 LSLAFDLSVKRV-FKGEFDFYGNSLIHCYGLGLCVFLAHL-----KDDKSV--------- 371
L + + +V G F F GN++I +G GL AHL K+ + V
Sbjct: 168 GELVYAIMPGKVRLTGNFFFTGNTVIVEHGQGLYSLYAHLSEILVKEGQLVKAGELIGRA 227
Query: 372 GSSGLKLGSGLHLGMLLQGVFVRP 395
GS+G G LHLG+ L G+ P
Sbjct: 228 GSTGRSTGPHLHLGLYLNGIPFNP 251
>ref|NP_623550.1| (NC_003869) Membrane proteins related to metalloendopeptidases
[Thermoanaerobacter tengcongensis]
gb|AAM25154.1| (AE013149) Membrane proteins related to metalloendopeptidases
[Thermoanaerobacter tengcongensis]
Length = 389
Score = 42.7 bits (99), Expect = 0.008
Identities = 49/197 (24%), Positives = 87/197 (43%), Gaps = 30/197 (15%)
Query: 221 RLREKDIDLSA---LKDKIAKQEKFQNDTEQALLERFSNARPKDLEKIQKIALEQGDFYK 277
R RE + +++ L + +Q+K+ + E LL K LEK+ + L++ K
Sbjct: 204 RQRELQVAMASREGLMRDLERQQKYYEEQEDQLLRE-----SKQLEKVIQ-ELQRKSKLK 257
Query: 278 DFSHFQALKPLNGPFKMASNF-LENRRILKNNQVLFKFLHLGVDLIPGKDLSLAFDLSVK 336
+S + L P+ + S F + IL ++ +H G+D+ + + +
Sbjct: 258 -YSGGKLLWPVPSSGVITSPFGMRLHPILGTSR-----MHTGIDIAAEMGADIVAAANGQ 311
Query: 337 RVFKGEFDFYGNSLIHCYGLGLCVFLAH-----LKDDKSV---------GSSGLKLGSGL 382
+F G + YG ++I +G G+ AH +K+ +V GS+GL G L
Sbjct: 312 VIFSGYYGGYGYAVIIDHGDGISTLYAHCSALLVKEGDTVKRGQVIAKIGSTGLSTGPHL 371
Query: 383 HLGMLLQGVFVRPNEWL 399
H + GV V P +WL
Sbjct: 372 HFEVRKNGVPVNPMDWL 388
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.321 0.140 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 266,888,567
Number of Sequences: 1026957
Number of extensions: 11660507
Number of successful extensions: 37597
Number of sequences better than 1.0e-02: 6
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 37587
Number of HSP's gapped (non-prelim): 6
length of query: 422
length of database: 324,149,939
effective HSP length: 124
effective length of query: 298
effective length of database: 196,807,271
effective search space: 58648566758
effective search space used: 58648566758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 99 (42.7 bits)