BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645669|ref|NP_207846.1| hypothetical protein
[Helicobacter pylori 26695]
(314 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207846.1| (NC_000915) hypothetical protein [Helicoba... 630 e-180
ref|NP_223089.1| (NC_000921) putative [Helicobacter pylori ... 592 e-168
ref|NP_207847.1| (NC_000915) hypothetical protein [Helicoba... 84 2e-15
ref|NP_223088.1| (NC_000921) putative [Helicobacter pylori ... 82 8e-15
ref|NP_208258.1| (NC_000915) hypothetical protein [Helicoba... 74 3e-12
ref|NP_224078.1| (NC_000921) putative Outer membrane protei... 69 5e-11
ref|NP_207848.1| (NC_000915) hypothetical protein [Helicoba... 59 5e-08
ref|NP_223087.1| (NC_000921) putative [Helicobacter pylori ... 57 4e-07
ref|NP_223273.1| (NC_000921) putative [Helicobacter pylori ... 49 7e-05
ref|NP_207403.1| (NC_000915) hypothetical protein [Helicoba... 49 7e-05
ref|NP_207500.1| (NC_000915) outer membrane protein (omp15)... 42 0.007
>ref|NP_207846.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64651 hypothetical protein HP1055 - Helicobacter pylori (strain 26695)
gb|AAD08107.1| (AE000613) H. pylori predicted coding region HP1055 [Helicobacter
pylori 26695]
Length = 314
Score = 630 bits (1624), Expect = e-180
Identities = 314/314 (100%), Positives = 314/314 (100%)
Query: 1 MLKFKYGLIYIALILGLQATDYDNLEEENQQLDEKINHLKQQLTEKGVSPKEMDKDKFEE 60
MLKFKYGLIYIALILGLQATDYDNLEEENQQLDEKINHLKQQLTEKGVSPKEMDKDKFEE
Sbjct: 1 MLKFKYGLIYIALILGLQATDYDNLEEENQQLDEKINHLKQQLTEKGVSPKEMDKDKFEE 60
Query: 61 EYINRSYPKISSKKKEKLLKSFSIADDKSGVFLGGGYAYGELNLSYQGEMLDRYGANAPS 120
EYINRSYPKISSKKKEKLLKSFSIADDKSGVFLGGGYAYGELNLSYQGEMLDRYGANAPS
Sbjct: 61 EYINRSYPKISSKKKEKLLKSFSIADDKSGVFLGGGYAYGELNLSYQGEMLDRYGANAPS 120
Query: 121 AFKNNININAPVSMISAKFGYQKYFVSYFGTRFYGDLLLGGGALKEDAIKQPVGSFIYVL 180
AFKNNININAPVSMISAKFGYQKYFVSYFGTRFYGDLLLGGGALKEDAIKQPVGSFIYVL
Sbjct: 121 AFKNNININAPVSMISAKFGYQKYFVSYFGTRFYGDLLLGGGALKEDAIKQPVGSFIYVL 180
Query: 181 GAVNTDLLFDMPLDFKTKKHFLGVYAGFGIGLMLYQDRPNQNGRNLVVGGYSSPNFLWKS 240
GAVNTDLLFDMPLDFKTKKHFLGVYAGFGIGLMLYQDRPNQNGRNLVVGGYSSPNFLWKS
Sbjct: 181 GAVNTDLLFDMPLDFKTKKHFLGVYAGFGIGLMLYQDRPNQNGRNLVVGGYSSPNFLWKS 240
Query: 241 LIEVDYTFNVGVSLTLYRKHRLEIGTKLPISYLRMGVEEGAIYQNKEDDERLLVSANNQF 300
LIEVDYTFNVGVSLTLYRKHRLEIGTKLPISYLRMGVEEGAIYQNKEDDERLLVSANNQF
Sbjct: 241 LIEVDYTFNVGVSLTLYRKHRLEIGTKLPISYLRMGVEEGAIYQNKEDDERLLVSANNQF 300
Query: 301 KRSSFLLVNYAFIF 314
KRSSFLLVNYAFIF
Sbjct: 301 KRSSFLLVNYAFIF 314
>ref|NP_223089.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71939 hypothetical protein jhp0370 - Helicobacter pylori (strain J99)
gb|AAD05955.1| (AE001472) putative [Helicobacter pylori J99]
Length = 313
Score = 592 bits (1527), Expect = e-168
Identities = 288/313 (92%), Positives = 305/313 (97%)
Query: 2 LKFKYGLIYIALILGLQATDYDNLEEENQQLDEKINHLKQQLTEKGVSPKEMDKDKFEEE 61
+K KY L+Y+A I+GLQATDYDNLEEENQQLDEKIN+LK+QLTEKGVSPKEMDKDKFEEE
Sbjct: 1 MKLKYWLVYLAFIIGLQATDYDNLEEENQQLDEKINNLKRQLTEKGVSPKEMDKDKFEEE 60
Query: 62 YINRSYPKISSKKKEKLLKSFSIADDKSGVFLGGGYAYGELNLSYQGEMLDRYGANAPSA 121
Y+ R+YPKISSKK++KLLKSFSIADDKSGVFLGGGYAYGELNLSYQGEMLDRYGANAPSA
Sbjct: 61 YLERTYPKISSKKRKKLLKSFSIADDKSGVFLGGGYAYGELNLSYQGEMLDRYGANAPSA 120
Query: 122 FKNNININAPVSMISAKFGYQKYFVSYFGTRFYGDLLLGGGALKEDAIKQPVGSFIYVLG 181
FKNNININAPVSMIS KFGYQKYFV YFGTRFYGDLLLGGGALKE+A+KQPVGSF YVLG
Sbjct: 121 FKNNININAPVSMISVKFGYQKYFVPYFGTRFYGDLLLGGGALKENALKQPVGSFFYVLG 180
Query: 182 AVNTDLLFDMPLDFKTKKHFLGVYAGFGIGLMLYQDRPNQNGRNLVVGGYSSPNFLWKSL 241
A+NTDLLFDMPLDFKTKKHFLGVYAGFGIGLMLYQD+PNQNGRNL+VGGYSSPNFLWKSL
Sbjct: 181 AMNTDLLFDMPLDFKTKKHFLGVYAGFGIGLMLYQDKPNQNGRNLIVGGYSSPNFLWKSL 240
Query: 242 IEVDYTFNVGVSLTLYRKHRLEIGTKLPISYLRMGVEEGAIYQNKEDDERLLVSANNQFK 301
IEVDYTFNVGVSLTLYRKHRLEIGTKLPISYLRMGVEEGAIY NKE+DERLL+SANNQFK
Sbjct: 241 IEVDYTFNVGVSLTLYRKHRLEIGTKLPISYLRMGVEEGAIYHNKENDERLLISANNQFK 300
Query: 302 RSSFLLVNYAFIF 314
RSSFLLVNYAFIF
Sbjct: 301 RSSFLLVNYAFIF 313
>ref|NP_207847.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||H64651 hypothetical protein HP1056 - Helicobacter pylori (strain 26695)
gb|AAD08108.1| (AE000613) H. pylori predicted coding region HP1056 [Helicobacter
pylori 26695]
Length = 284
Score = 84.0 bits (206), Expect = 2e-15
Identities = 87/285 (30%), Positives = 132/285 (45%), Gaps = 54/285 (18%)
Query: 3 KFKYGLIYIALILGLQA---TDYDNLEEENQQLD-----EKINHLKQQLTEKGVSPKEMD 54
K + ++ +LGL A T N+ EEN D E+ + E+ + K +D
Sbjct: 9 KIRNLILCFGFMLGLHAEENTTEGNMTEENISKDAPILLEEKRAQTLEFKEEKEAKKNID 68
Query: 55 KDKFEEEYINRSYPKISSKKKEKLLKSFSI-----ADDKSGVFLGGGYAYGELNLSYQGE 109
+ EE I++ ++ K E K+ S+ A +KSG F+G G++ +S
Sbjct: 69 EKSLLEE-IHKKKRQLYMLKGELHEKNESLLFQRMAKNKSGFFIG--VILGDIGVS---- 121
Query: 110 MLDRYGANAPSAFKNNININAPVSMISAKFGYQKYFVSYFGT-RFYGDLLLGGGALK--- 165
A++ F+ NI A + + GYQKYF + RFYG+ L GGA+K
Sbjct: 122 ------AHSYEKFELLSNIQASPLLYGLRSGYQKYFANGISALRFYGEYL--GGAMKGFK 173
Query: 166 EDAIKQPVGSFIYVLGAVNTDLLFDMPLDFKTKKHFLGVYAGFGIGLM-LYQDRPNQNGR 224
D++ Y ++N DLL D P+D K K+ LG++ G G+G +YQ+
Sbjct: 174 SDSLAS------YQTASLNIDLLMDKPID-KEKRFALGIFGGVGVGWNGMYQNLKE---- 222
Query: 225 NLVVGGYSSPNFLWKSLIEVDYTFNVGVSLTLYRKHRLEIGTKLP 269
V GYS PN L N+GVS+TL KHR E+ K+P
Sbjct: 223 ---VKGYSQPNAFGLVL-------NLGVSMTLNLKHRFELALKMP 257
>ref|NP_223088.1| (NC_000921) putative [Helicobacter pylori J99]
pir||E71939 hypothetical protein jhp0369 - Helicobacter pylori (strain J99)
gb|AAD05956.1| (AE001472) putative [Helicobacter pylori J99]
Length = 289
Score = 82.0 bits (201), Expect = 8e-15
Identities = 82/261 (31%), Positives = 121/261 (45%), Gaps = 51/261 (19%)
Query: 24 NLEEENQQLD-----EKINHLKQQLTEKGVSPKEMDKDKFEEEYINRSYPKISSKKKEKL 78
N EEN D E+ +L E+ K++D+ EE I++ ++ K E
Sbjct: 38 NTTEENTPKDAPILLEEKRAQTLELKEENEVAKKIDEKSLLEE-IHKKKRQLYMLKGELH 96
Query: 79 LKSFSI-----ADDKSGVFLGGGYAYGELNLSYQGEMLDRYGANAPSAFKNNININAPVS 133
K+ SI A +KSG F+G G++ ++ AN F+ NI A
Sbjct: 97 EKNESILFQQMAKNKSGFFIG--VILGDIGIN----------ANPYEKFELLSNIQASPL 144
Query: 134 MISAKFGYQKYFVSYFGT-RFYGDLLLGGGALK---EDAIKQPVGSFIYVLGAVNTDLLF 189
+ + GYQKYF + RFYG+ L GGA+K D++ Y ++N DLL
Sbjct: 145 LYGLRSGYQKYFANGISALRFYGEYL--GGAMKGFKSDSLAS------YQTASLNIDLLM 196
Query: 190 DMPLDFKTKKHFLGVYAGFGIGLM-LYQDRPNQNGRNLVVGGYSSPNFLWKSLIEVDYTF 248
D P+D K K+ LG++ G G+G +YQ+ + GYS PN L
Sbjct: 197 DKPID-KEKRFALGIFGGVGVGWNGMYQNLKE-------IRGYSQPNAFGLVL------- 241
Query: 249 NVGVSLTLYRKHRLEIGTKLP 269
N+GVS+TL KHR E+ K+P
Sbjct: 242 NLGVSMTLNLKHRFELALKMP 262
>ref|NP_208258.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||C64703 hypothetical protein HP1467 - Helicobacter pylori (strain 26695)
gb|AAD08526.1| (AE000647) H. pylori predicted coding region HP1467 [Helicobacter
pylori 26695]
Length = 231
Score = 73.6 bits (179), Expect = 3e-12
Identities = 53/204 (25%), Positives = 88/204 (42%), Gaps = 33/204 (16%)
Query: 65 RSYPKISSKKKEKLLKSFSIADDKSGVFLGGGYAYGELNLSYQGEMLDRYGANAPSAFKN 124
++Y + K ++ + KSG + GG+ E YQG+ + +
Sbjct: 34 KNYQEAHEKLYRSIINRQKLTRKKSGWYFLGGFGAVEATKDYQGQEMKDW---------- 83
Query: 125 NININAPVSMISAKFGYQKYFVSYFGTRFYGDLLLGGGALKEDAIKQPVGSFIYVLGAVN 184
++ ++ K G Q +F Y G R LG G + + K P SF +L AV
Sbjct: 84 -------IATLNLKTGVQSFFKKYIGIRGVFAWDLGSGKVNYQSHKDPTNSFFTML-AVG 135
Query: 185 TDLLFDMPLDFKTKKHFLGVYAGFGIGLMLYQDRPNQNGRNLVVGGYSSPNFLWKSLIEV 244
D++ + PL + KH+LG + G L++Y D+ N F S++
Sbjct: 136 LDVIMEFPLG--SYKHYLGAFGGARGALVVYTDKQNFK-------------FFKHSVVSG 180
Query: 245 DYTFNVGVSLTLYRKHRLEIGTKL 268
N GV LTL+ +HR+E+G K+
Sbjct: 181 GLAINGGVMLTLFLRHRIELGFKI 204
>ref|NP_224078.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||C71816 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06941.1| (AE001559) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 231
Score = 69.3 bits (168), Expect = 5e-11
Identities = 52/204 (25%), Positives = 87/204 (42%), Gaps = 33/204 (16%)
Query: 65 RSYPKISSKKKEKLLKSFSIADDKSGVFLGGGYAYGELNLSYQGEMLDRYGANAPSAFKN 124
++Y + K ++ + KSG + GG E YQG+ + +
Sbjct: 34 KNYQEAHEKLYRSIINRQKLTRKKSGWYFLGGVGAVEAIKDYQGKEMKDW---------- 83
Query: 125 NININAPVSMISAKFGYQKYFVSYFGTRFYGDLLLGGGALKEDAIKQPVGSFIYVLGAVN 184
++ ++ K G Q +F Y G R LG G + + K P SF +L AV
Sbjct: 84 -------IATLNLKTGVQSFFKKYIGIRGVFAWDLGSGKVNYQSYKDPTNSFFTML-AVG 135
Query: 185 TDLLFDMPLDFKTKKHFLGVYAGFGIGLMLYQDRPNQNGRNLVVGGYSSPNFLWKSLIEV 244
D++ + PL + KH+LG + G L++Y D+ N F S++
Sbjct: 136 LDVIMEFPLG--SYKHYLGAFGGARGALVVYTDKQNF-------------KFFKHSVVSG 180
Query: 245 DYTFNVGVSLTLYRKHRLEIGTKL 268
+ GV LTL+ +HR+E+G K+
Sbjct: 181 GLAISGGVMLTLFLRHRIELGFKI 204
>ref|NP_207848.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64652 hypothetical protein HP1057 - Helicobacter pylori (strain 26695)
gb|AAD08109.1| (AE000613) H. pylori predicted coding region HP1057 [Helicobacter
pylori 26695]
Length = 240
Score = 59.3 bits (142), Expect = 5e-08
Identities = 61/227 (26%), Positives = 96/227 (41%), Gaps = 48/227 (21%)
Query: 53 MDKDKFEEEYIN--RSYPKISSKKKEKLLKSFSIADDKSGVFLGGGYAYGELNLSYQGEM 110
+D D + +Y + Y K+ E+L++ A+ KSG+ LG + Y E+
Sbjct: 22 LDYDTIDPKYYKYIKYYKAYEDKEVEELIRDLKRANAKSGLILGINTGF-----FYNHEI 76
Query: 111 LDRYGANAPSAFKNNININAPVSMISAKFGYQKYFVSYF---------GTRFYGDLLLGG 161
+ R N+ S N +N + +FGYQ + S+F G R Y + G
Sbjct: 77 MVR--TNSSSITGNILNY---LFAYGLRFGYQTFRPSFFARLVKPNIIGRRIY--IQYYG 129
Query: 162 GALKEDAIKQPVGSFIYVLGAVNTDLLFDMPLDFKTKKHFLGVYAGFGIGLMLYQDRPNQ 221
GA K K G + +N D L D PL F K ++G Y G G+G++ +
Sbjct: 130 GAPK----KAGFGDVGFQSVMLNGDFLLDFPLPFVGKYLYMGGYMGLGLGVVAH------ 179
Query: 222 NGRNLVVGGYSSPNFLWKSLIEVDYTFNVGVSLTLYRKHRLEIGTKL 268
G N E +FN G++LT+ K+R+E G K+
Sbjct: 180 -GVNYTA--------------EWGMSFNAGLALTVLEKNRIEFGFKI 211
>ref|NP_223087.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71939 hypothetical protein jhp0368 - Helicobacter pylori (strain J99)
gb|AAD05957.1| (AE001472) putative [Helicobacter pylori J99]
Length = 240
Score = 56.6 bits (135), Expect = 4e-07
Identities = 60/227 (26%), Positives = 96/227 (41%), Gaps = 48/227 (21%)
Query: 53 MDKDKFEEEYIN--RSYPKISSKKKEKLLKSFSIADDKSGVFLGGGYAYGELNLSYQGEM 110
+D D + +Y + Y K+ E+L++ A+ KSG+ LG + Y E+
Sbjct: 22 LDYDTLDPKYYKYIKYYKAYEDKEVEELIRDLKRANAKSGLILGINTGF-----FYNHEI 76
Query: 111 LDRYGANAPSAFKNNININAPVSMISAKFGYQKYFVSYF---------GTRFYGDLLLGG 161
+ + N+ S N +N + +FGYQ + S+F G R Y + G
Sbjct: 77 MVK--TNSSSITGNILNY---LFAYGLRFGYQTFRPSFFARLVKPNIIGRRIY--IQYYG 129
Query: 162 GALKEDAIKQPVGSFIYVLGAVNTDLLFDMPLDFKTKKHFLGVYAGFGIGLMLYQDRPNQ 221
GA K K GS + +N D L D PL F K ++G Y G G+G++ +
Sbjct: 130 GAPK----KAGFGSVGFQSVMLNGDFLLDFPLPFVGKYLYMGGYMGLGLGVVAH------ 179
Query: 222 NGRNLVVGGYSSPNFLWKSLIEVDYTFNVGVSLTLYRKHRLEIGTKL 268
G N E +FN G++LT+ K+R+E K+
Sbjct: 180 -GVNYTA--------------EWGMSFNAGLALTVLEKNRIEFEFKI 211
>ref|NP_223273.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71919 hypothetical protein jhp0555 - Helicobacter pylori (strain J99)
gb|AAD06127.1| (AE001487) putative [Helicobacter pylori J99]
Length = 189
Score = 48.9 bits (115), Expect = 7e-05
Identities = 44/140 (31%), Positives = 61/140 (43%), Gaps = 39/140 (27%)
Query: 180 LGAVNTDLL---FDMPLDFKT-KKHFLGVYAGFGIGLMLYQDRPNQNG-RNLVVGGYSSP 234
L +NT LL D+ DF T KK+ GVY G GIG Y + N G +N GY+
Sbjct: 84 LHTINTSLLSLNMDVLSDFYTYKKYSFGVYGGLGIG---YFYQSNHLGMKNSSFMGYNG- 139
Query: 235 NFLWKSLIEVDYTFNVGVSLTLYRKHRLEIGTKLPISYLRMGVEEGAIYQNKEDDERLLV 294
FNVG+ T+ R HR+E+G K+P S R +
Sbjct: 140 ------------LFNVGLGSTIDRHHRVELGAKIPFSKTRNSFK---------------- 171
Query: 295 SANNQFKRSSFLLVNYAFIF 314
N+ F S F+ Y+++F
Sbjct: 172 --NSYFLESVFIHAAYSYMF 189
>ref|NP_207403.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||H64595 hypothetical protein HP0608 - Helicobacter pylori (strain 26695)
gb|AAD07674.1| (AE000574) H. pylori predicted coding region HP0608 [Helicobacter
pylori 26695]
Length = 160
Score = 48.9 bits (115), Expect = 7e-05
Identities = 44/140 (31%), Positives = 60/140 (42%), Gaps = 39/140 (27%)
Query: 180 LGAVNTDLL---FDMPLDFKT-KKHFLGVYAGFGIGLMLYQDRPNQNG-RNLVVGGYSSP 234
L +NT LL D+ DF T KK+ GVY G GIG Y + N G +N GY+
Sbjct: 55 LHTINTSLLSLNIDVLSDFYTYKKYSFGVYGGLGIG---YFYQSNHLGMKNSSFMGYNG- 110
Query: 235 NFLWKSLIEVDYTFNVGVSLTLYRKHRLEIGTKLPISYLRMGVEEGAIYQNKEDDERLLV 294
FNVG+ T+ R HR+E+G K+P S R +
Sbjct: 111 ------------LFNVGLGSTIDRHHRIELGAKIPFSKTRNSFK---------------- 142
Query: 295 SANNQFKRSSFLLVNYAFIF 314
N F S F+ Y+++F
Sbjct: 143 --NPYFLESVFIHATYSYMF 160
>ref|NP_207500.1| (NC_000915) outer membrane protein (omp15) [Helicobacter pylori
26695]
pir||B64608 outer membrane protein - Helicobacter pylori (strain 26695)
gb|AAD07756.1| (AE000583) outer membrane protein (omp15) [Helicobacter pylori
26695]
Length = 273
Score = 42.4 bits (98), Expect = 0.007
Identities = 55/259 (21%), Positives = 92/259 (35%), Gaps = 42/259 (16%)
Query: 81 SFSIADDKSGVFLGGGYAYGELNLSYQ----GEMLDRYGANAPSAFKN-------NIN-- 127
S S+ + GV++G Y G+ L+ G+ P N NIN
Sbjct: 18 SSSLLAEGDGVYIGTNYQLGQARLNSNIYNTGDCTGSVVGCPPGLTANKHNPGGTNINWH 77
Query: 128 ---INAPVSMISAKFGYQKYFV--------SYFGTRFYGDLLLGGGALKEDAIKQPVGSF 176
N ++ + GY+K+F +FG R YG G L +
Sbjct: 78 AKYANGALNGLGLNVGYKKFFQFKSFDMTSKWFGFRVYGLFDYGHATLGKQVYAPNKIQL 137
Query: 177 IYVLGAVNTDLLFDMPLDFKTKKHFLGVYAGFGIGLMLYQDRP---------NQNGRNLV 227
V V +DLL D+ G++ G IG ++ G ++
Sbjct: 138 DMVSWGVGSDLLADI---IDNDNASFGIFGGVAIGGNTWKSSAANYWKEQIIEAKGPDVC 194
Query: 228 VGGYSSPNFLWK---SLIEVDYTFNVGVSLTLYRKHRLEIGTKLPI---SYLRMGVEEGA 281
Y +PN + S + N GV +Y+ + +E G ++P+ +L G
Sbjct: 195 TPTYCNPNAPYSTKTSTVAFQVWLNFGVRANIYKHNGVEFGVRVPLLINKFLSAGPNATN 254
Query: 282 IYQNKEDDERLLVSANNQF 300
+Y + + D L + N F
Sbjct: 255 LYYHLKRDYSLYLGYNYTF 273
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.319 0.140 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 211,006,724
Number of Sequences: 1026957
Number of extensions: 9813272
Number of successful extensions: 32633
Number of sequences better than 1.0e-02: 11
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 32615
Number of HSP's gapped (non-prelim): 11
length of query: 314
length of database: 324,149,939
effective HSP length: 121
effective length of query: 193
effective length of database: 199,888,142
effective search space: 38578411406
effective search space used: 38578411406
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 97 (42.0 bits)