BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645670|ref|NP_207847.1| hypothetical protein
[Helicobacter pylori 26695]
(284 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207847.1| (NC_000915) hypothetical protein [Helicoba... 567 e-161
ref|NP_223088.1| (NC_000921) putative [Helicobacter pylori ... 521 e-147
ref|NP_223089.1| (NC_000921) putative [Helicobacter pylori ... 89 7e-17
ref|NP_207846.1| (NC_000915) hypothetical protein [Helicoba... 84 2e-15
ref|NP_207403.1| (NC_000915) hypothetical protein [Helicoba... 59 8e-08
ref|NP_223273.1| (NC_000921) putative [Helicobacter pylori ... 57 2e-07
ref|NP_208258.1| (NC_000915) hypothetical protein [Helicoba... 56 4e-07
ref|NP_224078.1| (NC_000921) putative Outer membrane protei... 56 5e-07
ref|NP_207848.1| (NC_000915) hypothetical protein [Helicoba... 52 7e-06
ref|NP_223087.1| (NC_000921) putative [Helicobacter pylori ... 52 1e-05
ref|NP_223377.1| (NC_000921) putative Outer membrane protei... 48 1e-04
ref|NP_207027.1| (NC_000915) outer membrane protein (omp6) ... 47 2e-04
ref|NP_207516.1| (NC_000915) outer membrane protein [Helico... 46 4e-04
ref|NP_223380.1| (NC_000921) putative Outer membrane protei... 46 4e-04
ref|NP_207519.1| (NC_000915) outer membrane protein [Helico... 46 4e-04
gb|AAM03038.1|AF487344_12 (AF487344) unknown [Helicobacter ... 46 5e-04
ref|NP_208035.1| (NC_000915) outer membrane protein (omp28)... 44 0.002
ref|NP_207115.1| (NC_000915) outer membrane protein (omp9) ... 44 0.002
ref|NP_222935.1| (NC_000921) Outer membrane protein/porin [... 44 0.003
ref|NP_207520.1| (NC_000915) hypothetical protein [Helicoba... 42 0.010
>ref|NP_207847.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||H64651 hypothetical protein HP1056 - Helicobacter pylori (strain 26695)
gb|AAD08108.1| (AE000613) H. pylori predicted coding region HP1056 [Helicobacter
pylori 26695]
Length = 284
Score = 567 bits (1461), Expect = e-161
Identities = 284/284 (100%), Positives = 284/284 (100%)
Query: 1 MGINMCSKKIRNLILCFGFMLGLHAEENTTEGNMTEENISKDAPILLEEKRAQTLEFKEE 60
MGINMCSKKIRNLILCFGFMLGLHAEENTTEGNMTEENISKDAPILLEEKRAQTLEFKEE
Sbjct: 1 MGINMCSKKIRNLILCFGFMLGLHAEENTTEGNMTEENISKDAPILLEEKRAQTLEFKEE 60
Query: 61 KEAKKNIDEKSLLEEIHKKKRQLYMLKGELHEKNESLLFQRMAKNKSGFFIGVILGDIGV 120
KEAKKNIDEKSLLEEIHKKKRQLYMLKGELHEKNESLLFQRMAKNKSGFFIGVILGDIGV
Sbjct: 61 KEAKKNIDEKSLLEEIHKKKRQLYMLKGELHEKNESLLFQRMAKNKSGFFIGVILGDIGV 120
Query: 121 SAHSYEKFELLSNIQASPLLYGLRSGYQKYFANGISALRFYGEYLGGAMKGFKSDSLASY 180
SAHSYEKFELLSNIQASPLLYGLRSGYQKYFANGISALRFYGEYLGGAMKGFKSDSLASY
Sbjct: 121 SAHSYEKFELLSNIQASPLLYGLRSGYQKYFANGISALRFYGEYLGGAMKGFKSDSLASY 180
Query: 181 QTASLNIDLLMDKPIDKEKRFALGIFGGVGVGWNGMYQNLKEVKGYSQPNAFGLVLNLGV 240
QTASLNIDLLMDKPIDKEKRFALGIFGGVGVGWNGMYQNLKEVKGYSQPNAFGLVLNLGV
Sbjct: 181 QTASLNIDLLMDKPIDKEKRFALGIFGGVGVGWNGMYQNLKEVKGYSQPNAFGLVLNLGV 240
Query: 241 SMTLNLKHRFELALKMPPLKETSQTFLYYFKSTNIYYISYNYLL 284
SMTLNLKHRFELALKMPPLKETSQTFLYYFKSTNIYYISYNYLL
Sbjct: 241 SMTLNLKHRFELALKMPPLKETSQTFLYYFKSTNIYYISYNYLL 284
>ref|NP_223088.1| (NC_000921) putative [Helicobacter pylori J99]
pir||E71939 hypothetical protein jhp0369 - Helicobacter pylori (strain J99)
gb|AAD05956.1| (AE001472) putative [Helicobacter pylori J99]
Length = 289
Score = 521 bits (1343), Expect = e-147
Identities = 263/289 (91%), Positives = 272/289 (94%), Gaps = 5/289 (1%)
Query: 1 MGINMCSKKIRNLILCFGFMLGLHAEENTTEGNMTE-----ENISKDAPILLEEKRAQTL 55
MGINMCSKKIRNLILCFGF+L L AEEN T+ NMTE EN KDAPILLEEKRAQTL
Sbjct: 1 MGINMCSKKIRNLILCFGFILSLCAEENITKENMTETNTTEENTPKDAPILLEEKRAQTL 60
Query: 56 EFKEEKEAKKNIDEKSLLEEIHKKKRQLYMLKGELHEKNESLLFQRMAKNKSGFFIGVIL 115
E KEE E K IDEKSLLEEIHKKKRQLYMLKGELHEKNES+LFQ+MAKNKSGFFIGVIL
Sbjct: 61 ELKEENEVAKKIDEKSLLEEIHKKKRQLYMLKGELHEKNESILFQQMAKNKSGFFIGVIL 120
Query: 116 GDIGVSAHSYEKFELLSNIQASPLLYGLRSGYQKYFANGISALRFYGEYLGGAMKGFKSD 175
GDIG++A+ YEKFELLSNIQASPLLYGLRSGYQKYFANGISALRFYGEYLGGAMKGFKSD
Sbjct: 121 GDIGINANPYEKFELLSNIQASPLLYGLRSGYQKYFANGISALRFYGEYLGGAMKGFKSD 180
Query: 176 SLASYQTASLNIDLLMDKPIDKEKRFALGIFGGVGVGWNGMYQNLKEVKGYSQPNAFGLV 235
SLASYQTASLNIDLLMDKPIDKEKRFALGIFGGVGVGWNGMYQNLKE++GYSQPNAFGLV
Sbjct: 181 SLASYQTASLNIDLLMDKPIDKEKRFALGIFGGVGVGWNGMYQNLKEIRGYSQPNAFGLV 240
Query: 236 LNLGVSMTLNLKHRFELALKMPPLKETSQTFLYYFKSTNIYYISYNYLL 284
LNLGVSMTLNLKHRFELALKMPPLKETSQTFLYYFKSTNIYYISYNYLL
Sbjct: 241 LNLGVSMTLNLKHRFELALKMPPLKETSQTFLYYFKSTNIYYISYNYLL 289
>ref|NP_223089.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71939 hypothetical protein jhp0370 - Helicobacter pylori (strain J99)
gb|AAD05955.1| (AE001472) putative [Helicobacter pylori J99]
Length = 313
Score = 88.6 bits (218), Expect = 7e-17
Identities = 90/282 (31%), Positives = 131/282 (45%), Gaps = 48/282 (17%)
Query: 9 KIRNLILCFGFMLGLHAEENTTEGNMTEENISKDAPILLEEKRAQTLEFKEEKEAKKNID 68
K++ ++ F++GL A T N+ EEN D I KR T + KE K+
Sbjct: 2 KLKYWLVYLAFIIGLQA---TDYDNLEEENQQLDEKIN-NLKRQLTEKGVSPKEMDKDKF 57
Query: 69 EKSLLEEIHKKKRQLYMLKGELHEKNESLLFQ-RMAKNKSGFFIG--VILGDIGVS---- 121
E+ LE + K +K + LL +A +KSG F+G G++ +S
Sbjct: 58 EEEYLERTYPKISS---------KKRKKLLKSFSIADDKSGVFLGGGYAYGELNLSYQGE 108
Query: 122 ------AHSYEKFELLSNIQASPLLYGLRSGYQKYFANGISALRFYGEYL--GGAMK-GF 172
A++ F+ NI A + ++ GYQKYF RFYG+ L GGA+K
Sbjct: 109 MLDRYGANAPSAFKNNININAPVSMISVKFGYQKYFVPYFGT-RFYGDLLLGGGALKENA 167
Query: 173 KSDSLAS--YQTASLNIDLLMDKPID-KEKRFALGIFGGVGVGWNGMYQNLKE------- 222
+ S Y ++N DLL D P+D K K+ LG++ G G+G +YQ+
Sbjct: 168 LKQPVGSFFYVLGAMNTDLLFDMPLDFKTKKHFLGVYAGFGIGLM-LYQDKPNQNGRNLI 226
Query: 223 VKGYSQPNAFGLVL-------NLGVSMTLNLKHRFELALKMP 257
V GYS PN L N+GVS+TL KHR E+ K+P
Sbjct: 227 VGGYSSPNFLWKSLIEVDYTFNVGVSLTLYRKHRLEIGTKLP 268
>ref|NP_207846.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64651 hypothetical protein HP1055 - Helicobacter pylori (strain 26695)
gb|AAD08107.1| (AE000613) H. pylori predicted coding region HP1055 [Helicobacter
pylori 26695]
Length = 314
Score = 84.0 bits (206), Expect = 2e-15
Identities = 87/285 (30%), Positives = 132/285 (45%), Gaps = 54/285 (18%)
Query: 9 KIRNLILCFGFMLGLHAEENTTEGNMTEENISKDAPILLEEKRAQTLEFKEEKEAKKNID 68
K + ++ +LGL A T N+ EEN D E+ + E+ + K +D
Sbjct: 3 KFKYGLIYIALILGLQA---TDYDNLEEENQQLD-----EKINHLKQQLTEKGVSPKEMD 54
Query: 69 EKSLLEE-IHKKKRQLYMLKGELHEKNESLLFQRMAKNKSGFFIG--VILGDIGVS---- 121
+ EE I++ ++ K E K+ S+ A +KSG F+G G++ +S
Sbjct: 55 KDKFEEEYINRSYPKISSKKKEKLLKSFSI-----ADDKSGVFLGGGYAYGELNLSYQGE 109
Query: 122 ------AHSYEKFELLSNIQASPLLYGLRSGYQKYFANGISALRFYGEYL--GGAMKGFK 173
A++ F+ NI A + + GYQKYF + RFYG+ L GGA+K
Sbjct: 110 MLDRYGANAPSAFKNNININAPVSMISAKFGYQKYFVSYFGT-RFYGDLLLGGGALK--- 165
Query: 174 SDSLAS------YQTASLNIDLLMDKPID-KEKRFALGIFGGVGVGWNGMYQNLKE---- 222
D++ Y ++N DLL D P+D K K+ LG++ G G+G +YQ+
Sbjct: 166 EDAIKQPVGSFIYVLGAVNTDLLFDMPLDFKTKKHFLGVYAGFGIGLM-LYQDRPNQNGR 224
Query: 223 ---VKGYSQPNAFGLVL-------NLGVSMTLNLKHRFELALKMP 257
V GYS PN L N+GVS+TL KHR E+ K+P
Sbjct: 225 NLVVGGYSSPNFLWKSLIEVDYTFNVGVSLTLYRKHRLEIGTKLP 269
>ref|NP_207403.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||H64595 hypothetical protein HP0608 - Helicobacter pylori (strain 26695)
gb|AAD07674.1| (AE000574) H. pylori predicted coding region HP0608 [Helicobacter
pylori 26695]
Length = 160
Score = 58.5 bits (140), Expect = 8e-08
Identities = 44/154 (28%), Positives = 76/154 (48%), Gaps = 11/154 (7%)
Query: 132 SNIQASPLLYGLRSGYQKYFANGISALRFYGEYLGGAMKGFKSDSLASYQTA--SLNIDL 189
S+ + L+G + GYQ F AL GE+ + K +L + T+ SLNID+
Sbjct: 15 SDSSYTAFLWGAKGGYQFAF---FKALALRGEF--SYLMAIKPTALHTINTSLLSLNIDV 69
Query: 190 LMDKPIDKEKRFALGIFGGVGVGWNGMYQNLKEVKGYSQPNAFGLVLNLGVSMTLNLKHR 249
L D K+++ G++GG+G+G+ YQ+ S + + N+G+ T++ HR
Sbjct: 70 LSD--FYTYKKYSFGVYGGLGIGY--FYQSNHLGMKNSSFMGYNGLFNVGLGSTIDRHHR 125
Query: 250 FELALKMPPLKETSQTFLYYFKSTNIYYISYNYL 283
EL K+P K + YF + + +Y+Y+
Sbjct: 126 IELGAKIPFSKTRNSFKNPYFLESVFIHATYSYM 159
>ref|NP_223273.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71919 hypothetical protein jhp0555 - Helicobacter pylori (strain J99)
gb|AAD06127.1| (AE001487) putative [Helicobacter pylori J99]
Length = 189
Score = 57.4 bits (137), Expect = 2e-07
Identities = 43/154 (27%), Positives = 76/154 (48%), Gaps = 11/154 (7%)
Query: 132 SNIQASPLLYGLRSGYQKYFANGISALRFYGEYLGGAMKGFKSDSLASYQTA--SLNIDL 189
S+ + L+G + GYQ F AL GE+ + K +L + T+ SLN+D+
Sbjct: 44 SDSSYTAFLWGAKGGYQFAF---FKALALRGEF--SYLMAIKPTALHTINTSLLSLNMDV 98
Query: 190 LMDKPIDKEKRFALGIFGGVGVGWNGMYQNLKEVKGYSQPNAFGLVLNLGVSMTLNLKHR 249
L D K+++ G++GG+G+G+ YQ+ S + + N+G+ T++ HR
Sbjct: 99 LSD--FYTYKKYSFGVYGGLGIGY--FYQSNHLGMKNSSFMGYNGLFNVGLGSTIDRHHR 154
Query: 250 FELALKMPPLKETSQTFLYYFKSTNIYYISYNYL 283
EL K+P K + YF + + +Y+Y+
Sbjct: 155 VELGAKIPFSKTRNSFKNSYFLESVFIHAAYSYM 188
>ref|NP_208258.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||C64703 hypothetical protein HP1467 - Helicobacter pylori (strain 26695)
gb|AAD08526.1| (AE000647) H. pylori predicted coding region HP1467 [Helicobacter
pylori 26695]
Length = 231
Score = 56.2 bits (134), Expect = 4e-07
Identities = 57/202 (28%), Positives = 99/202 (48%), Gaps = 18/202 (8%)
Query: 89 ELHEKNESLLF--QRMAKNKSGFFIGVILGDIGV--SAHSYEKFELLSNIQASPLLYGLR 144
E HEK + Q++ + KSG++ LG G + Y+ E+ I L G++
Sbjct: 38 EAHEKLYRSIINRQKLTRKKSGWYF---LGGFGAVEATKDYQGQEMKDWIATLNLKTGVQ 94
Query: 145 SGYQKYFANGISALRFYGEYLGGAMKGFKS--DSLASYQTA-SLNIDLLMDKPIDKEKRF 201
S ++KY GI + + LG ++S D S+ T ++ +D++M+ P+ K +
Sbjct: 95 SFFKKYI--GIRGV--FAWDLGSGKVNYQSHKDPTNSFFTMLAVGLDVIMEFPLGSYKHY 150
Query: 202 ALGIFGGVGVGWNGMYQNLKEVKGYSQPNAFG-LVLNLGVSMTLNLKHRFELALKMPPLK 260
LG FGG G +Y + + K + G L +N GV +TL L+HR EL K+ P
Sbjct: 151 -LGAFGGAR-GALVVYTDKQNFKFFKHSVVSGGLAINGGVMLTLFLRHRIELGFKILPTA 208
Query: 261 ETSQTFLYYFKSTNIYYISYNY 282
+ F+++ ++Y +Y+Y
Sbjct: 209 RLLSS-SKRFETSPLFYAAYSY 229
>ref|NP_224078.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||C71816 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06941.1| (AE001559) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 231
Score = 55.8 bits (133), Expect = 5e-07
Identities = 55/205 (26%), Positives = 103/205 (49%), Gaps = 24/205 (11%)
Query: 89 ELHEKNESLLF--QRMAKNKSGFFIGVILGDIGV--SAHSYEKFELLSNIQASPLLYGLR 144
E HEK + Q++ + KSG++ LG +G + Y+ E+ I L G++
Sbjct: 38 EAHEKLYRSIINRQKLTRKKSGWYF---LGGVGAVEAIKDYQGKEMKDWIATLNLKTGVQ 94
Query: 145 SGYQKYFANGISALRFYGEYLGGAM--KGFKSDSLASYQTASLNIDLLMDKPIDKEKRFA 202
S ++KY GI + F + G + + +K + + + ++ +D++M+ P+ K +
Sbjct: 95 SFFKKYI--GIRGV-FAWDLGSGKVNYQSYKDPTNSFFTMLAVGLDVIMEFPLGSYKHY- 150
Query: 203 LGIFGGVGVGWNGMYQNLKEVKGYSQPNAFG-LVLNLGVSMTLNLKHRFELALKMPP--- 258
LG FGG G +Y + + K + G L ++ GV +TL L+HR EL K+ P
Sbjct: 151 LGAFGGAR-GALVVYTDKQNFKFFKHSVVSGGLAISGGVMLTLFLRHRIELGFKILPTAR 209
Query: 259 -LKETSQTFLYYFKSTNIYYISYNY 282
L +S+ F+++ ++Y +Y+Y
Sbjct: 210 LLSSSSR-----FETSPLFYAAYSY 229
>ref|NP_207848.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64652 hypothetical protein HP1057 - Helicobacter pylori (strain 26695)
gb|AAD08109.1| (AE000613) H. pylori predicted coding region HP1057 [Helicobacter
pylori 26695]
Length = 240
Score = 52.0 bits (123), Expect = 7e-06
Identities = 58/206 (28%), Positives = 89/206 (43%), Gaps = 34/206 (16%)
Query: 92 EKNESLLFQRMAKNKSGFFIGVILG-----DIGVSAHSYEKFELLSNIQASPLLYGLRSG 146
E E + + A KSG +G+ G +I V +S + NI YGLR G
Sbjct: 45 EVEELIRDLKRANAKSGLILGINTGFFYNHEIMVRTNSSS---ITGNILNYLFAYGLRFG 101
Query: 147 YQ----KYFAN----GISALRFYGEYLGGAMK--GFKSDSLASYQTASLNIDLLMDKPID 196
YQ +FA I R Y +Y GGA K GF +Q+ LN D L+D P+
Sbjct: 102 YQTFRPSFFARLVKPNIIGRRIYIQYYGGAPKKAGFGD---VGFQSVMLNGDFLLDFPLP 158
Query: 197 KEKRFA-LGIFGGVGVGWNGMYQNLKEVKGYSQPNAFGLVLNLGVSMTLNLKHRFELALK 255
++ +G + G+G+G G + +G+ N G+++T+ K+R E K
Sbjct: 159 FVGKYLYMGGYMGLGLG--------VVAHGVNYTAEWGMSFNAGLALTVLEKNRIEFGFK 210
Query: 256 M----PPLKETSQTFLYYFKSTNIYY 277
+ P L+ S ++ NI Y
Sbjct: 211 ILNNFPFLQSNSSKETWWGAMANIGY 236
>ref|NP_223087.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71939 hypothetical protein jhp0368 - Helicobacter pylori (strain J99)
gb|AAD05957.1| (AE001472) putative [Helicobacter pylori J99]
Length = 240
Score = 51.6 bits (122), Expect = 1e-05
Identities = 53/181 (29%), Positives = 81/181 (44%), Gaps = 30/181 (16%)
Query: 92 EKNESLLFQRMAKNKSGFFIGVILG-----DIGVSAHSYEKFELLSNIQASPLLYGLRSG 146
E E + + A KSG +G+ G +I V +S + NI YGLR G
Sbjct: 45 EVEELIRDLKRANAKSGLILGINTGFFYNHEIMVKTNSSS---ITGNILNYLFAYGLRFG 101
Query: 147 YQ----KYFAN----GISALRFYGEYLGGAMK--GFKSDSLASYQTASLNIDLLMDKPID 196
YQ +FA I R Y +Y GGA K GF S +Q+ LN D L+D P+
Sbjct: 102 YQTFRPSFFARLVKPNIIGRRIYIQYYGGAPKKAGFGS---VGFQSVMLNGDFLLDFPLP 158
Query: 197 KEKRFA-LGIFGGVGVGWNGMYQNLKEVKGYSQPNAFGLVLNLGVSMTLNLKHRFELALK 255
++ +G + G+G+G G + +G+ N G+++T+ K+R E K
Sbjct: 159 FVGKYLYMGGYMGLGLG--------VVAHGVNYTAEWGMSFNAGLALTVLEKNRIEFEFK 210
Query: 256 M 256
+
Sbjct: 211 I 211
>ref|NP_223377.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||B71904 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06237.1| (AE001498) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 638
Score = 48.1 bits (113), Expect = 1e-04
Identities = 67/291 (23%), Positives = 119/291 (40%), Gaps = 31/291 (10%)
Query: 21 LGLHAEENTTEGNMTEENISKDAPILLEEKRAQTLEFKEEKEAKKNIDEKSLLEEIHKKK 80
+ L+ E N + N+ D+ + + K L+ + + D K+L EEI K
Sbjct: 348 VNLNKEINAVQDNVANYGNRLDSALSVA-KDVYNLKSNQTEIVTTYNDAKNLSEEISKLP 406
Query: 81 RQLYMLKGELHEKNESLLFQRMAKNKSGFFIGVILGDIGVSAHSYEKFELLSNIQASPLL 140
+ + +S Q + + L +S + ++K ++S+ + L
Sbjct: 407 YNQVNVTNIVMSPKDSTAGQYQINPEQQSNLNQALA--AMSNNPFKKVGMISSQNNNGAL 464
Query: 141 YGL--RSGYQKYFANGIS-ALRFYG--EYLGGAMKGFKSDSLASYQTASLNIDLLM---- 191
GL + GY+++F LR+YG +Y G +K +S + T DLL+
Sbjct: 465 NGLGVQVGYKQFFGESKRWGLRYYGFFDYNHGYIKSSFFNSSSDIWTYGGGSDLLVNFIN 524
Query: 192 DKPIDKEKRFALGIFGGV---GVGW-NGMYQNLKEVKG-YS---QPNAFGLVLNLGVSMT 243
D K + ++G+FGG+ G W N Y NL YS + F + NLG+
Sbjct: 525 DSITRKNNKLSVGLFGGIQLAGTTWLNSQYMNLTAFNNPYSAKVNASNFQFLFNLGLRTN 584
Query: 244 L----------NLKHRFELALKMPPLKETSQTFL-YYFKSTNIYYISYNYL 283
L + +H EL +K+P + +FL + +Y + NY+
Sbjct: 585 LATAKKKDSERSAQHGVELGIKIPTINTNYYSFLGTKLEYRRLYSVYLNYV 635
>ref|NP_207027.1| (NC_000915) outer membrane protein (omp6) [Helicobacter pylori
26695]
pir||E64548 outer membrane protein - Helicobacter pylori (strain 26695)
gb|AAD07298.1| (AE000543) outer membrane protein (omp6) [Helicobacter pylori
26695]
Length = 483
Score = 47.4 bits (111), Expect = 2e-04
Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 16/158 (10%)
Query: 142 GLRSGYQKYFA-NGISALRFYG--EYLGGAMKGFKSDSLASYQTASLNIDLLMD---KPI 195
G++ GY+++F N +R+Y +Y +K +S ++ T DLL++
Sbjct: 325 GVQLGYKQFFGKNKFFGIRYYAFFDYNHAYIKSNFFNSASNVFTYGAGSDLLLNFINGGS 384
Query: 196 DKEKRFALGIFGGV---GVGW-NGMYQNLKEV-KGYS---QPNAFGLVLNLGVSMTLNLK 247
DK ++ + GIFGG+ G W N + NLK YS F + N G+ + +
Sbjct: 385 DKNRKVSFGIFGGIALAGTTWLNSQFMNLKTTNSAYSAKINNTNFQFLFNTGLRLQ-GIH 443
Query: 248 HRFELALKMPPLKETSQTFL-YYFKSTNIYYISYNYLL 284
H EL +K+P + +F+ +Y + +NY+L
Sbjct: 444 HGVELGVKIPTINTNYYSFMGAKLAYRRLYSVYFNYVL 481
>ref|NP_207516.1| (NC_000915) outer membrane protein [Helicobacter pylori 26695]
pir||B64610 outer membrane protein - Helicobacter pylori (strain 26695)
Length = 608
Score = 46.2 bits (108), Expect = 4e-04
Identities = 50/192 (26%), Positives = 90/192 (46%), Gaps = 28/192 (14%)
Query: 120 VSAHSYEKFELLSNIQASPLLYGL--RSGYQKYFANGIS-ALRFYG--EYLGGAMKGFKS 174
+S + ++K ++S+ + L GL + GY+++F LR+YG +Y G +K
Sbjct: 414 MSNNPFKKVGMISSQNNNGALNGLGVQVGYKQFFGESKRWGLRYYGFFDYNHGYIKSSFF 473
Query: 175 DSLASYQT----ASLNIDLLMDKPIDKEKRFALGIFGGV---GVGW-NGMYQNLKEVKG- 225
+S + T + L ++++ D K + ++G+FGG+ G W N Y NL
Sbjct: 474 NSSSDIWTYGGGSDLLVNIINDSITRKNNKLSVGLFGGIQLAGTTWLNSQYVNLTAFNNP 533
Query: 226 YS-QPNA--FGLVLNLGVSMTL----------NLKHRFELALKMPPLKETSQTFL-YYFK 271
YS + NA F + NLG+ L + +H EL +K+P + +FL +
Sbjct: 534 YSAKVNATNFQFLFNLGLRTNLATARKKDSEHSAQHGIELGIKIPTITTNYYSFLGTQLQ 593
Query: 272 STNIYYISYNYL 283
+Y + NY+
Sbjct: 594 YRRLYSVYLNYV 605
>ref|NP_223380.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||E71904 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06240.1| (AE001498) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 651
Score = 46.2 bits (108), Expect = 4e-04
Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 28/192 (14%)
Query: 120 VSAHSYEKFELLSNIQASPLLYGL--RSGYQKYFANGIS-ALRFYG--EYLGGAMKGFKS 174
+S + ++K ++S+ + L GL + GY+++F LR+YG +Y G +K
Sbjct: 457 MSNNPFKKVGMISSQNNNGALNGLGVQVGYKQFFGESKRWGLRYYGFFDYNHGYIKSSFF 516
Query: 175 DSLASYQTASLNIDLLM----DKPIDKEKRFALGIFGGV---GVGW-NGMYQNLKEVKG- 225
+S + T DLL+ D K + ++G+FGG+ G W N Y NL
Sbjct: 517 NSSSDIWTYGGGSDLLVNFINDSITRKNNKLSVGLFGGIQLAGTTWLNSQYMNLTAFNNP 576
Query: 226 YS---QPNAFGLVLNLGVSMTL----------NLKHRFELALKMPPLKETSQTFL-YYFK 271
YS + F + NLG+ L + +H EL +K+P + +FL +
Sbjct: 577 YSAKVNASNFQFLFNLGLRTNLATAKKKDSERSAQHGVELGIKIPTINTNYYSFLGTKLE 636
Query: 272 STNIYYISYNYL 283
+Y + NY+
Sbjct: 637 YRRLYSVYLNYV 648
>ref|NP_207519.1| (NC_000915) outer membrane protein [Helicobacter pylori 26695]
pir||E64610 outer membrane protein - Helicobacter pylori (strain 26695)
Length = 629
Score = 46.2 bits (108), Expect = 4e-04
Identities = 50/192 (26%), Positives = 90/192 (46%), Gaps = 28/192 (14%)
Query: 120 VSAHSYEKFELLSNIQASPLLYGL--RSGYQKYFANGIS-ALRFYG--EYLGGAMKGFKS 174
+S + ++K ++S+ + L GL + GY+++F LR+YG +Y G +K
Sbjct: 435 MSNNPFKKVGMISSQNNNGALNGLGVQVGYKQFFGESKRWGLRYYGFFDYNHGYIKSSFF 494
Query: 175 DSLASYQT----ASLNIDLLMDKPIDKEKRFALGIFGGV---GVGW-NGMYQNLKEVKG- 225
+S + T + L ++++ D K + ++G+FGG+ G W N Y NL
Sbjct: 495 NSSSDIWTYGGGSDLLVNIINDSITRKNNKLSVGLFGGIQLAGTTWLNSQYVNLTAFNNP 554
Query: 226 YS-QPNA--FGLVLNLGVSMTL----------NLKHRFELALKMPPLKETSQTFL-YYFK 271
YS + NA F + NLG+ L + +H EL +K+P + +FL +
Sbjct: 555 YSAKVNATNFQFLFNLGLRTNLATARKKDSEHSAQHGIELGIKIPTITTNYYSFLGTQLQ 614
Query: 272 STNIYYISYNYL 283
+Y + NY+
Sbjct: 615 YRRLYSVYLNYV 626
>gb|AAM03038.1|AF487344_12 (AF487344) unknown [Helicobacter pylori]
Length = 320
Score = 45.8 bits (107), Expect = 5e-04
Identities = 56/207 (27%), Positives = 85/207 (41%), Gaps = 33/207 (15%)
Query: 34 MTEENISKDAPILLEEKRAQTLEFK-EEKEAKKNIDEKSLLEEIHKKKRQLYMLKGELHE 92
M +EN +D + Q LE K E+K A +N +K + + +K E+ E
Sbjct: 27 MPDENKQEDI------SQEQKLEHKMEQKIAPQNTLKKQQSAPLQSAELLQSQVKREVKE 80
Query: 93 KNESLLFQRMAKNKSGFFIGVILGDIGVSAHSYEKFELLSNIQASPLLY----------- 141
+ +S + K+GFF+G + G S + +SN L Y
Sbjct: 81 QKKSQKHLVAMQTKNGFFLGSEIAITGTSLK--QSLSFISNTTDDLLTYSKTSKNANFNM 138
Query: 142 GLRSGYQKYF-ANGISALRFYGEYLGGA-------MKGFKSDSLASYQTASLNIDL--LM 191
GL GYQ YF A+ ++ GG +K +KS A+Y + ID+ L
Sbjct: 139 GLLIGYQHYFGASKRHGIKISSHLYGGTPSDVSTDIKIYKSKVSANYTPLNFGIDVKYLF 198
Query: 192 D-KPIDKEKRFALGIFGGVGVGWNGMY 217
D + K+ R LG+ VG GW Y
Sbjct: 199 DFLNVIKKNRHTLGL--SVGFGWRMQY 223
>ref|NP_208035.1| (NC_000915) outer membrane protein (omp28) [Helicobacter pylori
26695]
pir||C64675 outer membrane protein - Helicobacter pylori (strain 26695)
gb|AAD08288.1| (AE000629) outer membrane protein (omp28) [Helicobacter pylori
26695]
Length = 733
Score = 43.9 bits (102), Expect = 0.002
Identities = 45/171 (26%), Positives = 69/171 (40%), Gaps = 29/171 (16%)
Query: 142 GLRSGYQKYFANGIS-ALRFYG--EYLGGAMKGFKSDSLASYQTASLNIDLLMDKPIDKE 198
G++ GY+++F R+YG +Y +K +S + T D L + DK
Sbjct: 560 GIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFINDKA 619
Query: 199 KRF-------ALGIFGGV---GVGW-NGMYQNLKEVKGYSQPNA----FGLVLNLGVSMT 243
F +LG+FGG+ G W N Y NL V F + N+GV M
Sbjct: 620 TNFLGKNNKLSLGLFGGIALAGTSWLNSEYVNLATVNNVYNAKMNVANFQFLFNMGVRMN 679
Query: 244 L----------NLKHRFELALKMPPLKETSQTFL-YYFKSTNIYYISYNYL 283
L +H EL LK+P + +F+ K +Y + NY+
Sbjct: 680 LARSKKKGSDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVYLNYV 730
>ref|NP_207115.1| (NC_000915) outer membrane protein (omp9) [Helicobacter pylori
26695]
pir||E64559 outer membrane protein - Helicobacter pylori (strain 26695)
gb|AAD07380.1| (AE000549) outer membrane protein (omp9) [Helicobacter pylori
26695]
Length = 745
Score = 43.9 bits (102), Expect = 0.002
Identities = 45/171 (26%), Positives = 69/171 (40%), Gaps = 29/171 (16%)
Query: 142 GLRSGYQKYFANGIS-ALRFYG--EYLGGAMKGFKSDSLASYQTASLNIDLLMDKPIDKE 198
G++ GY+++F R+YG +Y +K +S + T D L + DK
Sbjct: 572 GIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFINDKA 631
Query: 199 KRF-------ALGIFGGV---GVGW-NGMYQNLKEVKGYSQPNA----FGLVLNLGVSMT 243
F +LG+FGG+ G W N Y NL V F + N+GV M
Sbjct: 632 TNFLGKNNKLSLGLFGGIALAGTSWLNSEYVNLATVNNVYNAKMNVANFQFLFNMGVRMN 691
Query: 244 L----------NLKHRFELALKMPPLKETSQTFL-YYFKSTNIYYISYNYL 283
L +H EL LK+P + +F+ K +Y + NY+
Sbjct: 692 LARSKKKGSDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVYLNYV 742
>ref|NP_222935.1| (NC_000921) Outer membrane protein/porin [Helicobacter pylori J99]
pir||A71958 outer membrane protein/porin - Helicobacter pylori (strain J99)
gb|AAD05801.1| (AE001460) Outer membrane protein/porin [Helicobacter pylori J99]
Length = 483
Score = 43.5 bits (101), Expect = 0.003
Identities = 42/158 (26%), Positives = 73/158 (45%), Gaps = 16/158 (10%)
Query: 142 GLRSGYQKYFA-NGISALRFYG--EYLGGAMKGFKSDSLASYQTASLNIDLLMD---KPI 195
G++ GY+++F N +R+YG +Y +K +S ++ T DLL++
Sbjct: 325 GVQLGYKQFFGKNKFFGIRYYGFFDYNYAYIKSNFFNSASNVFTYGAGSDLLLNFINGGS 384
Query: 196 DKEKRFALGIFGGV---GVGW-NGMYQNLKEV-KGYS---QPNAFGLVLNLGVSMTLNLK 247
D+ ++ + GIFGG+ G W N NLK YS F + N G+ + +
Sbjct: 385 DRNRKVSFGIFGGIALAGTTWLNNQSANLKITNSAYSAKINNTNFQFLFNTGLRLQ-GIH 443
Query: 248 HRFELALKMPPLKETSQTFL-YYFKSTNIYYISYNYLL 284
H EL +K+P + +F+ +Y + NY+L
Sbjct: 444 HGIELGVKIPTINTNYYSFMGAKLAYRRLYSLYLNYVL 481
>ref|NP_207520.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64610 hypothetical protein HP0726 - Helicobacter pylori (strain 26695)
gb|AAD07776.1| (AE000585) H. pylori predicted coding region HP0726 [Helicobacter
pylori 26695]
Length = 305
Score = 41.6 bits (96), Expect = 0.010
Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 184 SLNIDLLMDKPIDKEKR--FALGIFGGVGVG----WNGMYQNLKEVKGYSQPNAFG-LVL 236
+L ID L+ + EK F +G+FGG GV W+ YQN +G A G +
Sbjct: 182 NLPIDTLLKLALKTEKMLFFKIGVFGGGGVEYAILWSPNYQNQNTKQGDKFFAAGGGFFV 241
Query: 237 NLGVSMTLNLKHRFELALKMPPLKETSQTFLYYFKSTNIY 276
N G S+ + ++RF + LK+P ++Q++ F S+N++
Sbjct: 242 NFGGSLYIGKRNRFNVGLKIPYYSLSAQSW-KNFGSSNVW 280
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.318 0.138 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 175,201,481
Number of Sequences: 1026957
Number of extensions: 7355070
Number of successful extensions: 31673
Number of sequences better than 1.0e-02: 20
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 31657
Number of HSP's gapped (non-prelim): 21
length of query: 284
length of database: 324,149,939
effective HSP length: 120
effective length of query: 164
effective length of database: 200,915,099
effective search space: 32950076236
effective search space used: 32950076236
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 96 (41.6 bits)