BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645671|ref|NP_207848.1| hypothetical protein
[Helicobacter pylori 26695]
(240 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207848.1| (NC_000915) hypothetical protein [Helicoba... 497 e-140
ref|NP_223087.1| (NC_000921) putative [Helicobacter pylori ... 478 e-134
ref|NP_207846.1| (NC_000915) hypothetical protein [Helicoba... 59 3e-08
ref|NP_223089.1| (NC_000921) putative [Helicobacter pylori ... 58 1e-07
ref|NP_223088.1| (NC_000921) putative [Helicobacter pylori ... 53 3e-06
ref|NP_207847.1| (NC_000915) hypothetical protein [Helicoba... 52 6e-06
>ref|NP_207848.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64652 hypothetical protein HP1057 - Helicobacter pylori (strain 26695)
gb|AAD08109.1| (AE000613) H. pylori predicted coding region HP1057 [Helicobacter
pylori 26695]
Length = 240
Score = 497 bits (1280), Expect = e-140
Identities = 240/240 (100%), Positives = 240/240 (100%)
Query: 1 MGLKKYAILWSLMGFYAGLNALDYDTIDPKYYKYIKYYKAYEDKEVEELIRDLKRANAKS 60
MGLKKYAILWSLMGFYAGLNALDYDTIDPKYYKYIKYYKAYEDKEVEELIRDLKRANAKS
Sbjct: 1 MGLKKYAILWSLMGFYAGLNALDYDTIDPKYYKYIKYYKAYEDKEVEELIRDLKRANAKS 60
Query: 61 GLILGINTGFFYNHEIMVRTNSSSITGNILNYLFAYGLRFGYQTFRPSFFARLVKPNIIG 120
GLILGINTGFFYNHEIMVRTNSSSITGNILNYLFAYGLRFGYQTFRPSFFARLVKPNIIG
Sbjct: 61 GLILGINTGFFYNHEIMVRTNSSSITGNILNYLFAYGLRFGYQTFRPSFFARLVKPNIIG 120
Query: 121 RRIYIQYYGGAPKKAGFGDVGFQSVMLNGDFLLDFPLPFVGKYLYMGGYMGLGLGVVAHG 180
RRIYIQYYGGAPKKAGFGDVGFQSVMLNGDFLLDFPLPFVGKYLYMGGYMGLGLGVVAHG
Sbjct: 121 RRIYIQYYGGAPKKAGFGDVGFQSVMLNGDFLLDFPLPFVGKYLYMGGYMGLGLGVVAHG 180
Query: 181 VNYTAEWGMSFNAGLALTVLEKNRIEFGFKILNNFPFLQSNSSKETWWGAMANIGYQYVF 240
VNYTAEWGMSFNAGLALTVLEKNRIEFGFKILNNFPFLQSNSSKETWWGAMANIGYQYVF
Sbjct: 181 VNYTAEWGMSFNAGLALTVLEKNRIEFGFKILNNFPFLQSNSSKETWWGAMANIGYQYVF 240
>ref|NP_223087.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71939 hypothetical protein jhp0368 - Helicobacter pylori (strain J99)
gb|AAD05957.1| (AE001472) putative [Helicobacter pylori J99]
Length = 240
Score = 478 bits (1229), Expect = e-134
Identities = 231/240 (96%), Positives = 236/240 (98%)
Query: 1 MGLKKYAILWSLMGFYAGLNALDYDTIDPKYYKYIKYYKAYEDKEVEELIRDLKRANAKS 60
MGLKK AILWSLMGF AGL+ALDYDT+DPKYYKYIKYYKAYEDKEVEELIRDLKRANAKS
Sbjct: 1 MGLKKRAILWSLMGFCAGLSALDYDTLDPKYYKYIKYYKAYEDKEVEELIRDLKRANAKS 60
Query: 61 GLILGINTGFFYNHEIMVRTNSSSITGNILNYLFAYGLRFGYQTFRPSFFARLVKPNIIG 120
GLILGINTGFFYNHEIMV+TNSSSITGNILNYLFAYGLRFGYQTFRPSFFARLVKPNIIG
Sbjct: 61 GLILGINTGFFYNHEIMVKTNSSSITGNILNYLFAYGLRFGYQTFRPSFFARLVKPNIIG 120
Query: 121 RRIYIQYYGGAPKKAGFGDVGFQSVMLNGDFLLDFPLPFVGKYLYMGGYMGLGLGVVAHG 180
RRIYIQYYGGAPKKAGFG VGFQSVMLNGDFLLDFPLPFVGKYLYMGGYMGLGLGVVAHG
Sbjct: 121 RRIYIQYYGGAPKKAGFGSVGFQSVMLNGDFLLDFPLPFVGKYLYMGGYMGLGLGVVAHG 180
Query: 181 VNYTAEWGMSFNAGLALTVLEKNRIEFGFKILNNFPFLQSNSSKETWWGAMANIGYQYVF 240
VNYTAEWGMSFNAGLALTVLEKNRIEF FKILNNFPFLQSNSSKETWWGA+A+IGYQYVF
Sbjct: 181 VNYTAEWGMSFNAGLALTVLEKNRIEFEFKILNNFPFLQSNSSKETWWGAIASIGYQYVF 240
>ref|NP_207846.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64651 hypothetical protein HP1055 - Helicobacter pylori (strain 26695)
gb|AAD08107.1| (AE000613) H. pylori predicted coding region HP1055 [Helicobacter
pylori 26695]
Length = 314
Score = 59.3 bits (142), Expect = 3e-08
Identities = 61/227 (26%), Positives = 96/227 (41%), Gaps = 48/227 (21%)
Query: 22 LDYDTIDPKYYKYIKYYKAYEDKEVEELIRDLKRANAKSGLILGINTGF-----FYNHEI 76
+D D + +Y + Y K+ E+L++ A+ KSG+ LG + Y E+
Sbjct: 53 MDKDKFEEEYIN--RSYPKISSKKKEKLLKSFSIADDKSGVFLGGGYAYGELNLSYQGEM 110
Query: 77 MVR--TNSSSITGNILNY---LFAYGLRFGYQTFRPSFFARLVKPNIIGRRIY--IQYYG 129
+ R N+ S N +N + +FGYQ + S+F G R Y + G
Sbjct: 111 LDRYGANAPSAFKNNININAPVSMISAKFGYQKYFVSYF---------GTRFYGDLLLGG 161
Query: 130 GAPK----KAGFGDVGFQSVMLNGDFLLDFPLPFVGKYLYMGGYMGLGLGVVAH------ 179
GA K K G + +N D L D PL F K ++G Y G G+G++ +
Sbjct: 162 GALKEDAIKQPVGSFIYVLGAVNTDLLFDMPLDFKTKKHFLGVYAGFGIGLMLYQDRPNQ 221
Query: 180 -GVNYTA--------------EWGMSFNAGLALTVLEKNRIEFGFKI 211
G N E +FN G++LT+ K+R+E G K+
Sbjct: 222 NGRNLVVGGYSSPNFLWKSLIEVDYTFNVGVSLTLYRKHRLEIGTKL 268
>ref|NP_223089.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71939 hypothetical protein jhp0370 - Helicobacter pylori (strain J99)
gb|AAD05955.1| (AE001472) putative [Helicobacter pylori J99]
Length = 313
Score = 57.8 bits (138), Expect = 1e-07
Identities = 60/226 (26%), Positives = 97/226 (42%), Gaps = 46/226 (20%)
Query: 22 LDYDTIDPKYYKYIKYYKAYEDKEVEELIRDLKRANAKSGLILGINTGF-----FYNHEI 76
+D D + +Y + + Y K+ ++L++ A+ KSG+ LG + Y E+
Sbjct: 52 MDKDKFEEEYLE--RTYPKISSKKRKKLLKSFSIADDKSGVFLGGGYAYGELNLSYQGEM 109
Query: 77 MVR--TNSSSITGNILNY---LFAYGLRFGYQT-FRPSFFARLVKPNIIGRRIYIQYYGG 130
+ R N+ S N +N + ++FGYQ F P F R ++G GG
Sbjct: 110 LDRYGANAPSAFKNNININAPVSMISVKFGYQKYFVPYFGTRFYGDLLLG--------GG 161
Query: 131 APK----KAGFGDVGFQSVMLNGDFLLDFPLPFVGKYLYMGGYMGLGLGVVAH------- 179
A K K G + +N D L D PL F K ++G Y G G+G++ +
Sbjct: 162 ALKENALKQPVGSFFYVLGAMNTDLLFDMPLDFKTKKHFLGVYAGFGIGLMLYQDKPNQN 221
Query: 180 GVNYTA--------------EWGMSFNAGLALTVLEKNRIEFGFKI 211
G N E +FN G++LT+ K+R+E G K+
Sbjct: 222 GRNLIVGGYSSPNFLWKSLIEVDYTFNVGVSLTLYRKHRLEIGTKL 267
>ref|NP_223088.1| (NC_000921) putative [Helicobacter pylori J99]
pir||E71939 hypothetical protein jhp0369 - Helicobacter pylori (strain J99)
gb|AAD05956.1| (AE001472) putative [Helicobacter pylori J99]
Length = 289
Score = 52.8 bits (125), Expect = 3e-06
Identities = 58/206 (28%), Positives = 88/206 (42%), Gaps = 34/206 (16%)
Query: 45 EVEELIRDLKRANAKSGLILGINTGFFYNHEIMVRTN---SSSITGNILNYLFAYGLRFG 101
E E I + A KSG +G+ G +I + N + NI YGLR G
Sbjct: 97 EKNESILFQQMAKNKSGFFIGVILG-----DIGINANPYEKFELLSNIQASPLLYGLRSG 151
Query: 102 YQTFRPSFFARLVKPNIIGRRIYIQYYGGAPKKAGFGD---VGFQSVMLNGDFLLDFPLP 158
YQ +FA I R Y +Y GGA K GF +Q+ LN D L+D P+
Sbjct: 152 YQ----KYFAN----GISALRFYGEYLGGAMK--GFKSDSLASYQTASLNIDLLMDKPID 201
Query: 159 FVGKYLYMGGYMGLGLG--------VVAHGVNYTAEWGMSFNAGLALTVLEKNRIEFGFK 210
++ +G + G+G+G G + +G+ N G+++T+ K+R E K
Sbjct: 202 KEKRFA-LGIFGGVGVGWNGMYQNLKEIRGYSQPNAFGLVLNLGVSMTLNLKHRFELALK 260
Query: 211 ILNNFPFLQSNSSKETWWGAMANIGY 236
+ P L+ S ++ NI Y
Sbjct: 261 M----PPLKETSQTFLYYFKSTNIYY 282
>ref|NP_207847.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||H64651 hypothetical protein HP1056 - Helicobacter pylori (strain 26695)
gb|AAD08108.1| (AE000613) H. pylori predicted coding region HP1056 [Helicobacter
pylori 26695]
Length = 284
Score = 52.0 bits (123), Expect = 6e-06
Identities = 58/206 (28%), Positives = 89/206 (43%), Gaps = 34/206 (16%)
Query: 45 EVEELIRDLKRANAKSGLILGINTGFFYNHEIMVRTNSSS---ITGNILNYLFAYGLRFG 101
E E + + A KSG +G+ G +I V +S + NI YGLR G
Sbjct: 92 EKNESLLFQRMAKNKSGFFIGVILG-----DIGVSAHSYEKFELLSNIQASPLLYGLRSG 146
Query: 102 YQTFRPSFFARLVKPNIIGRRIYIQYYGGAPKKAGFGD---VGFQSVMLNGDFLLDFPLP 158
YQ +FA I R Y +Y GGA K GF +Q+ LN D L+D P+
Sbjct: 147 YQ----KYFAN----GISALRFYGEYLGGAMK--GFKSDSLASYQTASLNIDLLMDKPID 196
Query: 159 FVGKYLYMGGYMGLGLG--------VVAHGVNYTAEWGMSFNAGLALTVLEKNRIEFGFK 210
++ +G + G+G+G G + +G+ N G+++T+ K+R E K
Sbjct: 197 KEKRFA-LGIFGGVGVGWNGMYQNLKEVKGYSQPNAFGLVLNLGVSMTLNLKHRFELALK 255
Query: 211 ILNNFPFLQSNSSKETWWGAMANIGY 236
+ P L+ S ++ NI Y
Sbjct: 256 M----PPLKETSQTFLYYFKSTNIYY 277
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.325 0.145 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 165,352,739
Number of Sequences: 1026957
Number of extensions: 7499444
Number of successful extensions: 15081
Number of sequences better than 1.0e-02: 6
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 15075
Number of HSP's gapped (non-prelim): 6
length of query: 240
length of database: 324,149,939
effective HSP length: 118
effective length of query: 122
effective length of database: 202,969,013
effective search space: 24762219586
effective search space used: 24762219586
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 95 (41.2 bits)