BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645678|ref|NP_207855.1| hypothetical protein
[Helicobacter pylori 26695]
         (93 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207855.1|  (NC_000915) hypothetical protein [Helicoba...   193  3e-49
ref|NP_223080.1|  (NC_000921) putative [Helicobacter pylori ...   178  1e-44

>ref|NP_207855.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||H64652 hypothetical protein HP1064 - Helicobacter pylori (strain 26695)
 gb|AAD08111.1| (AE000613) H. pylori predicted coding region HP1064 [Helicobacter
          pylori 26695]
          Length = 93

 Score =  193 bits (491), Expect = 3e-49
 Identities = 93/93 (100%), Positives = 93/93 (100%)

Query: 1  MLYASKTSLFLQIKGKFMLRILIPLLIIVWVLWRLFLRQKPPKDNHSYTQQTPKELEDHM 60
          MLYASKTSLFLQIKGKFMLRILIPLLIIVWVLWRLFLRQKPPKDNHSYTQQTPKELEDHM
Sbjct: 1  MLYASKTSLFLQIKGKFMLRILIPLLIIVWVLWRLFLRQKPPKDNHSYTQQTPKELEDHM 60

Query: 61 IVCSKCQTYVSSKDAIYSGAVAYCSETCLKDKR 93
          IVCSKCQTYVSSKDAIYSGAVAYCSETCLKDKR
Sbjct: 61 IVCSKCQTYVSSKDAIYSGAVAYCSETCLKDKR 93



>ref|NP_223080.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||A71942 hypothetical protein jhp0361 - Helicobacter pylori (strain J99)
 gb|AAD05943.1| (AE001471) putative [Helicobacter pylori J99]
          Length = 97

 Score =  178 bits (452), Expect = 1e-44
 Identities = 89/96 (92%), Positives = 89/96 (92%), Gaps = 4/96 (4%)

Query: 1  MLYASKTSLFLQIKGKFMLRILIPLLIIVWVLWRLFLRQKPPKD----NHSYTQQTPKEL 56
          MLYASK  LFLQIKGKFMLRILIPLLIIVWVLWRLFLRQKP KD    NHSYTQQTPKEL
Sbjct: 1  MLYASKARLFLQIKGKFMLRILIPLLIIVWVLWRLFLRQKPHKDDHRDNHSYTQQTPKEL 60

Query: 57 EDHMIVCSKCQTYVSSKDAIYSGAVAYCSETCLKDK 92
          EDHMIVCSKCQTYVSSKDAIYSGAVAYCSETCLKDK
Sbjct: 61 EDHMIVCSKCQTYVSSKDAIYSGAVAYCSETCLKDK 96



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.325    0.137    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,404,141
Number of Sequences: 1026957
Number of extensions: 2217252
Number of successful extensions: 6794
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6791
Number of HSP's gapped (non-prelim): 2
length of query: 93
length of database: 324,149,939
effective HSP length: 69
effective length of query: 24
effective length of database: 253,289,906
effective search space: 6078957744
effective search space used: 6078957744
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 90 (39.3 bits)