BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645679|ref|NP_207856.1| hypothetical protein
[Helicobacter pylori 26695]
         (135 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207856.1|  (NC_000915) hypothetical protein [Helicoba...   278  7e-75
ref|NP_223079.1|  (NC_000921) putative [Helicobacter pylori ...   260  2e-69
ref|NP_282091.1|  (NC_002163) hypothetical protein Cj0939c [...    55  1e-07

>ref|NP_207856.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||A64653 hypothetical protein HP1065 - Helicobacter pylori (strain 26695)
 gb|AAD08112.1| (AE000613) H. pylori predicted coding region HP1065 [Helicobacter
           pylori 26695]
          Length = 135

 Score =  278 bits (711), Expect = 7e-75
 Identities = 135/135 (100%), Positives = 135/135 (100%)

Query: 1   MLILGHPLIPSARFVFIKNTDAIHSNTNNDIVCFEAHPKNLELAKYCCENSVHFSVIFLS 60
           MLILGHPLIPSARFVFIKNTDAIHSNTNNDIVCFEAHPKNLELAKYCCENSVHFSVIFLS
Sbjct: 1   MLILGHPLIPSARFVFIKNTDAIHSNTNNDIVCFEAHPKNLELAKYCCENSVHFSVIFLS 60

Query: 61  HKIETDTFFLFNAFKPLYCIFKDIKQAILAQQHATNYLLDSKILFFMDLNDTELWEICAK 120
           HKIETDTFFLFNAFKPLYCIFKDIKQAILAQQHATNYLLDSKILFFMDLNDTELWEICAK
Sbjct: 61  HKIETDTFFLFNAFKPLYCIFKDIKQAILAQQHATNYLLDSKILFFMDLNDTELWEICAK 120

Query: 121 SQIDGVISKDSLLLK 135
           SQIDGVISKDSLLLK
Sbjct: 121 SQIDGVISKDSLLLK 135



>ref|NP_223079.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||H71941 hypothetical protein jhp0360 - Helicobacter pylori (strain J99)
 gb|AAD05944.1| (AE001471) putative [Helicobacter pylori J99]
          Length = 135

 Score =  260 bits (665), Expect = 2e-69
 Identities = 126/135 (93%), Positives = 130/135 (95%)

Query: 1   MLILGHPLIPSARFVFIKNTDAIHSNTNNDIVCFEAHPKNLELAKYCCENSVHFSVIFLS 60
           MLILGHPLIPSARFVFIKNTDAIHS+ NNDIVCFEA+PKNLELA+YCCEN VHFSVIFLS
Sbjct: 1   MLILGHPLIPSARFVFIKNTDAIHSSANNDIVCFEANPKNLELAQYCCENGVHFSVIFLS 60

Query: 61  HKIETDTFFLFNAFKPLYCIFKDIKQAILAQQHATNYLLDSKILFFMDLNDTELWEICAK 120
           HKIETDTFFLFNAFKPLYCIFKDIKQAILAQQHATNYLLDSKILF MD NDTE WEICAK
Sbjct: 61  HKIETDTFFLFNAFKPLYCIFKDIKQAILAQQHATNYLLDSKILFSMDFNDTESWEICAK 120

Query: 121 SQIDGVISKDSLLLK 135
           +QIDGVISKDSLLLK
Sbjct: 121 NQIDGVISKDSLLLK 135



>ref|NP_282091.1| (NC_002163) hypothetical protein Cj0939c [Campylobacter jejuni]
 pir||B81368 hypothetical protein Cj0939c [imported] - Campylobacter jejuni
           (strain NCTC 11168)
 emb|CAB73196.1| (AL139076) hypothetical protein Cj0939c [Campylobacter jejuni]
          Length = 126

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 40/132 (30%), Positives = 66/132 (49%), Gaps = 12/132 (9%)

Query: 1   MLILGHPLIPSARFVFIKNTDAIHSNTNNDIVCFEAHPKNLELAKYCCENSVHFSVIFLS 60
           MLI+GH L+ +  F FI++ + +  N    IV  E      +L  Y  +N   F+++  +
Sbjct: 1   MLIIGHKLLKNLDFSFIESVEEVKDNKVYCIVYDE------KLISYLSQNDFEFAILVQN 54

Query: 61  HKIETDTFFLFNAFKPLYCIFKDIKQAILAQQHATNYLLDSKILFFMDLNDTELWEICAK 120
                D  FL NA    + +  D K A  A + A  Y+ DS++L  +D    E ++   K
Sbjct: 55  ----KDEIFLANALGAKFLLCNDKKLAKFASKVAEFYVFDSRVLMIVD--KLENFKKFYK 108

Query: 121 SQIDGVISKDSL 132
            +IDG+I KD++
Sbjct: 109 LKIDGIILKDNI 120



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.327    0.141    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,563,338
Number of Sequences: 1026957
Number of extensions: 3119436
Number of successful extensions: 9057
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9055
Number of HSP's gapped (non-prelim): 3
length of query: 135
length of database: 324,149,939
effective HSP length: 111
effective length of query: 24
effective length of database: 210,157,712
effective search space: 5043785088
effective search space used: 5043785088
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 89 (38.9 bits)