BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645680|ref|NP_207857.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(200 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223078.1| (NC_000921) putative Outer membrane protei... 415 e-115
gb|AAD01681.1| (AF021090) conserved hypothetical protein [H... 326 1e-88
ref|NP_208315.1| (NC_000915) hypothetical protein [Helicoba... 174 4e-43
ref|NP_224132.1| (NC_000921) putative [Helicobacter pylori ... 169 2e-41
ref|NP_207948.1| (NC_000915) outer membrane protein (omp26)... 57 1e-07
ref|NP_223801.1| (NC_000921) putative Outer membrane protei... 56 3e-07
ref|NP_208292.1| (NC_000915) outer membrane protein (omp32)... 56 3e-07
ref|NP_224112.1| (NC_000921) putative Outer membrane protei... 55 4e-07
emb|CAB42878.1| (Y18996) HopW protein [Helicobacter pylori] 55 4e-07
ref|NP_207027.1| (NC_000915) outer membrane protein (omp6) ... 54 8e-07
emb|CAB42880.1| (Y18998) HopZ protein [Helicobacter pylori] 54 8e-07
ref|NP_222958.1| (NC_000921) putative Outer membrane protei... 54 8e-07
ref|NP_207050.1| (NC_000915) outer membrane protein (omp7) ... 54 8e-07
ref|NP_222935.1| (NC_000921) Outer membrane protein/porin [... 54 1e-06
ref|NP_207465.1| (NC_000915) outer membrane protein (omp14)... 52 5e-06
ref|NP_223332.1| (NC_000921) putative Outer membrane protei... 52 5e-06
ref|NP_223027.1| (NC_000921) putative Outer membrane protei... 50 1e-05
emb|CAB42877.1| (Y18995) HopV protein [Helicobacter pylori] 48 6e-05
ref|NP_207122.1| (NC_000915) outer membrane protein (omp10)... 47 2e-04
ref|NP_223142.1| (NC_000921) putative Outer membrane protei... 46 2e-04
ref|NP_207270.1| (NC_000915) outer membrane protein (omp11)... 46 2e-04
ref|NP_208260.1| (NC_000915) outer membrane protein (omp31)... 46 3e-04
ref|NP_206827.1| (NC_000915) outer membrane protein (omp2) ... 45 4e-04
emb|CAB42879.1| (Y18997) HopX protein [Helicobacter pylori] 45 4e-04
ref|NP_222959.1| (NC_000921) putative Outer membrane protei... 45 4e-04
ref|NP_207052.1| (NC_000915) outer membrane protein (omp8) ... 45 5e-04
ref|NP_223800.1| (NC_000921) putative Outer membrane protei... 45 6e-04
ref|NP_223377.1| (NC_000921) putative Outer membrane protei... 45 6e-04
ref|NP_223380.1| (NC_000921) putative Outer membrane protei... 45 6e-04
ref|NP_224080.1| (NC_000921) putative Outer membrane protei... 44 8e-04
ref|NP_207947.1| (NC_000915) outer membrane protein (omp25)... 44 8e-04
ref|NP_207705.1| (NC_000915) outer membrane protein (omp21)... 44 0.001
ref|NP_207516.1| (NC_000915) outer membrane protein [Helico... 43 0.002
ref|NP_207519.1| (NC_000915) outer membrane protein [Helico... 43 0.002
ref|NP_222743.1| (NC_000921) putative Outer membrane protei... 42 0.003
emb|CAB05387.1| (Z82988) unknown [Helicobacter pylori] 42 0.004
emb|CAB42974.1| (Y18985) hopZ [Helicobacter pylori] 42 0.004
ref|NP_207715.1| (NC_000915) outer membrane protein (omp22)... 42 0.004
ref|NP_207275.1| (NC_000915) outer membrane protein (omp12)... 42 0.004
ref|NP_222729.1| (NC_000921) putative Outer membrane protei... 42 0.005
emb|CAB42973.1| (Y18984) hopZ [Helicobacter pylori] 42 0.005
ref|NP_223567.1| (NC_000921) Outer membrane protein/porin [... 42 0.005
emb|CAB42979.1| (Y18991) hopZ [Helicobacter pylori] 41 0.007
emb|CAB43002.1| (Y18990) hopZ [Helicobacter pylori] 41 0.007
emb|CAB53535.1| (Y18992) hopZ [Helicobacter pylori] 41 0.009
ref|NP_206811.1| (NC_000915) outer membrane protein [Helico... 41 0.009
>ref|NP_223078.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
ref|NP_207857.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||B64653 probable outer membrane protein - Helicobacter pylori
gb|AAD08104.1| (AE000613) conserved hypothetical protein [Helicobacter pylori
26695]
gb|AAD05945.1| (AE001471) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 200
Score = 415 bits (1066), Expect = e-115
Identities = 200/200 (100%), Positives = 200/200 (100%)
Query: 1 MHYLRILILSMSFLNILNAENLSYMSSSYQIGTVFMRPLNTNKLLQGASILQGYEVNPKN 60
MHYLRILILSMSFLNILNAENLSYMSSSYQIGTVFMRPLNTNKLLQGASILQGYEVNPKN
Sbjct: 1 MHYLRILILSMSFLNILNAENLSYMSSSYQIGTVFMRPLNTNKLLQGASILQGYEVNPKN 60
Query: 61 DWAYSRYYFFIDYGNVLFNNDSTLQANMFTYGVGGDFMVAYAKNPINRWAFFFGLQLAAN 120
DWAYSRYYFFIDYGNVLFNNDSTLQANMFTYGVGGDFMVAYAKNPINRWAFFFGLQLAAN
Sbjct: 61 DWAYSRYYFFIDYGNVLFNNDSTLQANMFTYGVGGDFMVAYAKNPINRWAFFFGLQLAAN 120
Query: 121 TWILNNKVKDLVVNTWDSLKDFNFHNTYFRAIGKFGVQFRTIVLYHKVDVEIGMKIFLTP 180
TWILNNKVKDLVVNTWDSLKDFNFHNTYFRAIGKFGVQFRTIVLYHKVDVEIGMKIFLTP
Sbjct: 121 TWILNNKVKDLVVNTWDSLKDFNFHNTYFRAIGKFGVQFRTIVLYHKVDVEIGMKIFLTP 180
Query: 181 ERRSLFERSFLFFVSHSWHF 200
ERRSLFERSFLFFVSHSWHF
Sbjct: 181 ERRSLFERSFLFFVSHSWHF 200
>gb|AAD01681.1| (AF021090) conserved hypothetical protein [Helicobacter pylori]
Length = 160
Score = 326 bits (835), Expect = 1e-88
Identities = 157/160 (98%), Positives = 159/160 (99%)
Query: 1 MHYLRILILSMSFLNILNAENLSYMSSSYQIGTVFMRPLNTNKLLQGASILQGYEVNPKN 60
M+YLRILILS+SFLNILNAENLSYMSSSYQIGTVFMRPLNTNKLLQGASILQGYEVNPKN
Sbjct: 1 MYYLRILILSISFLNILNAENLSYMSSSYQIGTVFMRPLNTNKLLQGASILQGYEVNPKN 60
Query: 61 DWAYSRYYFFIDYGNVLFNNDSTLQANMFTYGVGGDFMVAYAKNPINRWAFFFGLQLAAN 120
DWAYSRYYFFIDYGNVLFNNDSTLQANMFTYGVGGDFMVAYAKNPINRWAFFFGLQLAAN
Sbjct: 61 DWAYSRYYFFIDYGNVLFNNDSTLQANMFTYGVGGDFMVAYAKNPINRWAFFFGLQLAAN 120
Query: 121 TWILNNKVKDLVVNTWDSLKDFNFHNTYFRAIGKFGVQFR 160
TWILNNKVKDLVVNTWDSLKDFNFHNTYFRAIGKFGVQ R
Sbjct: 121 TWILNNKVKDLVVNTWDSLKDFNFHNTYFRAIGKFGVQGR 160
>ref|NP_208315.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||E64710 hypothetical protein HP1525 - Helicobacter pylori (strain 26695)
gb|AAD08567.1| (AE000650) H. pylori predicted coding region HP1525 [Helicobacter
pylori 26695]
Length = 211
Score = 174 bits (442), Expect = 4e-43
Identities = 82/196 (41%), Positives = 128/196 (64%), Gaps = 3/196 (1%)
Query: 7 LILSMSFLN--ILNAENLSYMSSSYQIGTVFMRPLNTNK-LLQGASILQGYEVNPKNDWA 63
L LS+ FLN I+ A++ Y++S YQ+G + M+ N K ++GAS G+E+NP N W
Sbjct: 15 LFLSVYFLNPTIMQAKSRFYVASQYQVGKMIMKKYNDLKRTIEGASFSLGWEINPTNYWF 74
Query: 64 YSRYYFFIDYGNVLFNNDSTLQANMFTYGVGGDFMVAYAKNPINRWAFFFGLQLAANTWI 123
YSRYYFF+DYGNV+ N + QANMFTYG GGD +V Y KNP+ ++ F+G+Q+A NTW
Sbjct: 75 YSRYYFFMDYGNVILNKRTGAQANMFTYGFGGDLIVEYNKNPLYVFSLFYGMQVAENTWT 134
Query: 124 LNNKVKDLVVNTWDSLKDFNFHNTYFRAIGKFGVQFRTIVLYHKVDVEIGMKIFLTPERR 183
++ + +++ W S++ F+ + FR +G G +F+T++ +H +E+G+K E
Sbjct: 135 ISKHSANFIIDDWRSIQGFSLKTSNFRMLGLVGFKFQTVLFHHDASIEVGIKWPFAFEYD 194
Query: 184 SLFERSFLFFVSHSWH 199
S F R F F+SH+++
Sbjct: 195 SAFVRLFSVFISHTFY 210
>ref|NP_224132.1| (NC_000921) putative [Helicobacter pylori J99]
pir||B71809 hypothetical protein jhp1414 - Helicobacter pylori (strain J99)
gb|AAD06993.1| (AE001564) putative [Helicobacter pylori J99]
Length = 211
Score = 169 bits (427), Expect = 2e-41
Identities = 79/196 (40%), Positives = 127/196 (64%), Gaps = 3/196 (1%)
Query: 7 LILSMSFLN--ILNAENLSYMSSSYQIGTVFMRPLNTNK-LLQGASILQGYEVNPKNDWA 63
L LS+ FL+ + A++ Y++S YQ+G + M+ N K ++GAS G+E+NP N W
Sbjct: 15 LFLSVYFLSPTLTQAKSRFYVASQYQVGKMIMKKYNDLKRTIEGASFSLGWEINPTNYWF 74
Query: 64 YSRYYFFIDYGNVLFNNDSTLQANMFTYGVGGDFMVAYAKNPINRWAFFFGLQLAANTWI 123
YSRYYFF+DYGNV+ N + QANMFTYG GGD ++ Y KNP+ ++ F+G+Q+A NTW
Sbjct: 75 YSRYYFFMDYGNVILNKRTGAQANMFTYGFGGDLIMEYNKNPLYVFSLFYGMQVAENTWT 134
Query: 124 LNNKVKDLVVNTWDSLKDFNFHNTYFRAIGKFGVQFRTIVLYHKVDVEIGMKIFLTPERR 183
++ + +++ W S++ F+ + FR +G G +F+T++ +H +E+G+K E
Sbjct: 135 ISKHSANFIIDDWRSIQGFSLKTSNFRMLGLVGFKFQTVLFHHDASIEVGIKWPFAFEYD 194
Query: 184 SLFERSFLFFVSHSWH 199
S F R F F+SH+++
Sbjct: 195 SPFVRLFSVFISHTFY 210
>ref|NP_207948.1| (NC_000915) outer membrane protein (omp26) [Helicobacter pylori
26695]
pir||E64664 outer membrane protein - Helicobacter pylori (strain 26695)
gb|AAD08205.1| (AE000621) outer membrane protein (omp26) [Helicobacter pylori 26695]
Length = 1230
Score = 57.0 bits (136), Expect = 1e-07
Identities = 34/98 (34%), Positives = 54/98 (54%), Gaps = 9/98 (9%)
Query: 66 RYYFFIDYG-NVLFNNDSTLQANMFTYGVGGDFMVAYAKNPINRWAFFFGL----QLAAN 120
R+YFF DYG + + + +++AN+F YGVG DF+ + N A FGL QL
Sbjct: 1076 RHYFFFDYGFSEIGLANQSVKANIFAYGVGTDFLWNLFRRTYNTKALNFGLFAGVQLGGA 1135
Query: 121 TWILNNKVKDLVVNTWDSLKDFNFHNTYFRAIGKFGVQ 158
TW+ + ++ +++ W S D H+T F+ FGV+
Sbjct: 1136 TWL--SSLRQQIIDNWGSAND--IHSTNFQVALNFGVR 1169
>ref|NP_223801.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori J99]
pir||D71850 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06666.1| (AE001536) putative Outer membrane protein [Helicobacter pylori J99]
Length = 1237
Score = 55.8 bits (133), Expect = 3e-07
Identities = 33/98 (33%), Positives = 54/98 (54%), Gaps = 9/98 (9%)
Query: 66 RYYFFIDYG-NVLFNNDSTLQANMFTYGVGGDFMVAYAKNPINRWAFFFGL----QLAAN 120
R+YFF DYG + + + +++AN+F YGVG DF+ + N A FGL QL
Sbjct: 1083 RHYFFFDYGFSEIGLANQSVKANIFAYGVGTDFLWNLFRRTYNTKALNFGLFAGVQLGGA 1142
Query: 121 TWILNNKVKDLVVNTWDSLKDFNFHNTYFRAIGKFGVQ 158
TW+ + ++ +++ W + D H+T F+ FGV+
Sbjct: 1143 TWL--SSLRQQIIDNWGNAND--IHSTNFQVALNFGVR 1176
>ref|NP_208292.1| (NC_000915) outer membrane protein (omp32) [Helicobacter pylori
26695]
pir||E64707 outer membrane protein - Helicobacter pylori (strain 26695)
gb|AAD08546.1| (AE000648) outer membrane protein (omp32) [Helicobacter pylori
26695]
Length = 388
Score = 55.8 bits (133), Expect = 3e-07
Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 13/99 (13%)
Query: 42 NKLLQGASILQGYE-VNPKNDWAYSRYYFFIDYGNVLFNND-----------STLQANMF 89
N+ + G ++ GY+ K W RYY F DYG+ F+N S +A+M+
Sbjct: 150 NQPMYGLGVMTGYKHFIGKKRWFGLRYYGFFDYGHTNFSNSRAANAISPFYLSDQKADMY 209
Query: 90 TYGVGGDFMVAYAKNPINRWAFFFGLQLAANTWILNNKV 128
TYG G D + P FF G+ A NTW NN+V
Sbjct: 210 TYGFGTDMLFNIIDKPKATAGFFLGVNFAGNTW-TNNRV 247
>ref|NP_224112.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||C71813 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06975.1| (AE001561) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 388
Score = 55.5 bits (132), Expect = 4e-07
Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 13/99 (13%)
Query: 42 NKLLQGASILQGYE-VNPKNDWAYSRYYFFIDYGNVLFNND-----------STLQANMF 89
N+ + G ++ GY+ K W RYY F DYG+ F+N S +A+M+
Sbjct: 150 NQPMYGLGVMTGYKHFVGKKRWFGLRYYGFFDYGHTNFSNSRAANAISPFYLSDQKADMY 209
Query: 90 TYGVGGDFMVAYAKNPINRWAFFFGLQLAANTWILNNKV 128
TYG G D + P FF G+ A NTW NN+V
Sbjct: 210 TYGFGTDMLFNVIDKPKATAGFFVGVNFAGNTW-TNNRV 247
>emb|CAB42878.1| (Y18996) HopW protein [Helicobacter pylori]
Length = 387
Score = 55.5 bits (132), Expect = 4e-07
Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 13/99 (13%)
Query: 42 NKLLQGASILQGYE-VNPKNDWAYSRYYFFIDYGNVLFNND-----------STLQANMF 89
N+ + G ++ GY+ K W RYY F DYG+ F+N S +A+M+
Sbjct: 149 NQPMYGLGVMTGYKHFIGKKRWFGLRYYGFFDYGHTNFSNSRAANAISPFYLSDQKADMY 208
Query: 90 TYGVGGDFMVAYAKNPINRWAFFFGLQLAANTWILNNKV 128
TYG G D + P FF G+ A NTW NN+V
Sbjct: 209 TYGFGTDMLFNIIDKPKATAGFFVGVNFAGNTW-TNNRV 246
>ref|NP_207027.1| (NC_000915) outer membrane protein (omp6) [Helicobacter pylori
26695]
pir||E64548 outer membrane protein - Helicobacter pylori (strain 26695)
gb|AAD07298.1| (AE000543) outer membrane protein (omp6) [Helicobacter pylori
26695]
Length = 483
Score = 54.3 bits (129), Expect = 8e-07
Identities = 44/144 (30%), Positives = 71/144 (48%), Gaps = 14/144 (9%)
Query: 40 NTNKLLQGASILQGY-EVNPKNDWAYSRYYFFIDYGNVLF-NNDSTLQANMFTYGVGGDF 97
+ N + G + GY + KN + RYY F DY + +N +N+FTYG G D
Sbjct: 316 SNNGAMNGVGVQLGYKQFFGKNKFFGIRYYAFFDYNHAYIKSNFFNSASNVFTYGAGSDL 375
Query: 98 MVAYA-----KNPINRWAFFFGLQLAANTWILNNKVKDLVVNTWDSLKDFNFHNTYFRAI 152
++ + KN + F G+ LA TW LN++ +L T +S +NT F+ +
Sbjct: 376 LLNFINGGSDKNRKVSFGIFGGIALAGTTW-LNSQFMNL--KTTNSAYSAKINNTNFQFL 432
Query: 153 GKFGVQFRTIVLYHKVDVEIGMKI 176
G++ + I +H VE+G+KI
Sbjct: 433 FNTGLRLQGI--HH--GVELGVKI 452
>emb|CAB42880.1| (Y18998) HopZ protein [Helicobacter pylori]
Length = 485
Score = 54.3 bits (129), Expect = 8e-07
Identities = 60/208 (28%), Positives = 96/208 (45%), Gaps = 25/208 (12%)
Query: 14 LNILNAENLSYMSSSYQIGTVFMRP-LNTNKLLQGASILQ-GYEVNPKNDWAYS-----R 66
+NI+NA + SS+ + + P L + K Q AS+ G ++ K + + R
Sbjct: 282 INIINAVLGQFESSASSLYKISYIPNLFSLKDYQSASMNGFGAKMGYKQFFTHKKNIGLR 341
Query: 67 YYFFIDYGNVLFNNDST-LQANMFTYGVGGDFMVAYAKNPINR----WAFFFGLQLAANT 121
YY F+DYG F + + + AN+ TYGVG DF+ + R FFG Q+A T
Sbjct: 342 YYGFLDYGYANFGDTNLKVGANLVTYGVGTDFLYNVYERSRRRERTTIGLFFGAQIAGQT 401
Query: 122 WILNNKVKDLVVNTWDSLKDFNFHNTYFRAIGKFGVQFRTIVLYHKVD--VEIGMKI--- 176
W N V +L+ +K +F + +G +T H++D +E G+KI
Sbjct: 402 WSTN--VTNLLSGQRPDVKSSSFQ--FLFDLGVRTNFAKTNFNKHRLDQGIEFGVKIPVI 457
Query: 177 ----FLTPERRSLFERSFLFFVSHSWHF 200
F T + + R+F F+V +S F
Sbjct: 458 AHKYFATQGSSASYMRNFSFYVGYSVGF 485
>ref|NP_222958.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||G71957 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD05813.1| (AE001461) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 479
Score = 54.3 bits (129), Expect = 8e-07
Identities = 60/208 (28%), Positives = 96/208 (45%), Gaps = 25/208 (12%)
Query: 14 LNILNAENLSYMSSSYQIGTVFMRP-LNTNKLLQGASILQ-GYEVNPKNDWAYS-----R 66
+NI+NA + SS+ + + P L + K Q AS+ G ++ K + + R
Sbjct: 276 INIINAVLGQFESSASSLYKISYIPNLFSLKDYQSASMNGFGAKMGYKQFFTHKKNIGLR 335
Query: 67 YYFFIDYGNVLFNNDST-LQANMFTYGVGGDFMVAYAKNPINR----WAFFFGLQLAANT 121
YY F+DYG F + + + AN+ TYGVG DF+ + R FFG Q+A T
Sbjct: 336 YYGFLDYGYANFGDTNLKVGANLVTYGVGTDFLYNVYERSRRRERTTIGLFFGAQIAGQT 395
Query: 122 WILNNKVKDLVVNTWDSLKDFNFHNTYFRAIGKFGVQFRTIVLYHKVD--VEIGMKI--- 176
W N V +L+ +K +F + +G +T H++D +E G+KI
Sbjct: 396 WSTN--VTNLLSGQRPDVKSSSFQ--FLFDLGVRTNFAKTNFNKHRLDQGIEFGVKIPVI 451
Query: 177 ----FLTPERRSLFERSFLFFVSHSWHF 200
F T + + R+F F+V +S F
Sbjct: 452 AHKYFATQGSSASYMRNFSFYVGYSVGF 479
>ref|NP_207050.1| (NC_000915) outer membrane protein (omp7) [Helicobacter pylori
26695]
pir||D64551 outer membrane protein - Helicobacter pylori (strain 26695)
gb|AAD07319.1| (AE000544) outer membrane protein (omp7) [Helicobacter pylori
26695]
Length = 487
Score = 54.3 bits (129), Expect = 8e-07
Identities = 60/218 (27%), Positives = 97/218 (43%), Gaps = 26/218 (11%)
Query: 3 YLRILILSMSFLNILNAENLSYMSSSYQIGTV---FMRPLNTNKLLQGASILQGYE---V 56
Y + L +++ +N + + S SS Y+I + F + + G GY+
Sbjct: 276 YKKGLDRTINIINTVLGQFESSASSLYKISYIPNLFSLKDYQSASMNGFGAKMGYKQFFT 335
Query: 57 NPKNDWAYSRYYFFIDYGNVLFNNDST-LQANMFTYGVGGDFMVAYAKNPINR----WAF 111
+ KN RYY F+DYG F + + + AN+ TYGVG DF+ + R
Sbjct: 336 HKKN--VGLRYYGFLDYGYANFGDTNLKVGANLVTYGVGTDFLYNVYERSRRRERTTIGL 393
Query: 112 FFGLQLAANTWILNNKVKDLVVNTWDSLKDFNFHNTYFRAIGKFGVQFRTIVLYHKVD-- 169
FFG Q+A TW N V +L+ +K +F + +G +T H++D
Sbjct: 394 FFGAQIAGQTWSTN--VTNLLSGQRPDVKSSSFQ--FLFDLGVRTNFAKTNFNKHRLDQG 449
Query: 170 VEIGMKI-------FLTPERRSLFERSFLFFVSHSWHF 200
+E G+KI F T + + R+F F+V +S F
Sbjct: 450 IEFGVKIPVIAHKYFATQGSSASYMRNFSFYVGYSVGF 487
>ref|NP_222935.1| (NC_000921) Outer membrane protein/porin [Helicobacter pylori J99]
pir||A71958 outer membrane protein/porin - Helicobacter pylori (strain J99)
gb|AAD05801.1| (AE001460) Outer membrane protein/porin [Helicobacter pylori J99]
Length = 483
Score = 53.9 bits (128), Expect = 1e-06
Identities = 41/144 (28%), Positives = 68/144 (46%), Gaps = 14/144 (9%)
Query: 40 NTNKLLQGASILQGY-EVNPKNDWAYSRYYFFIDYGNVLF-NNDSTLQANMFTYGVGGDF 97
+ N + G + GY + KN + RYY F DY +N +N+FTYG G D
Sbjct: 316 SNNGAMNGVGVQLGYKQFFGKNKFFGIRYYGFFDYNYAYIKSNFFNSASNVFTYGAGSDL 375
Query: 98 MVAYAKNPINR-----WAFFFGLQLAANTWILNNKVKDLVVNTWDSLKDFNFHNTYFRAI 152
++ + +R + F G+ LA TW+ N + N+ S K +NT F+ +
Sbjct: 376 LLNFINGGSDRNRKVSFGIFGGIALAGTTWLNNQSANLKITNSAYSAK---INNTNFQFL 432
Query: 153 GKFGVQFRTIVLYHKVDVEIGMKI 176
G++ + I +H +E+G+KI
Sbjct: 433 FNTGLRLQGI--HH--GIELGVKI 452
>ref|NP_207465.1| (NC_000915) outer membrane protein (omp14) [Helicobacter pylori
26695]
pir||G64603 outer membrane protein - Helicobacter pylori (strain 26695)
gb|AAD07732.1| (AE000580) outer membrane protein (omp14) [Helicobacter pylori
26695]
Length = 270
Score = 51.6 bits (122), Expect = 5e-06
Identities = 38/144 (26%), Positives = 56/144 (38%), Gaps = 41/144 (28%)
Query: 20 ENLSYMSSSYQIGTVFMRPLNTNK------------------LLQGASILQGY-EVNPKN 60
+N Y+ SYQ+G N K ++QG + GY + +
Sbjct: 46 KNAWYLGISYQVGQASQSVKNPPKSSEFNYPKFPVGKTDYLAVMQGLGLTVGYKQFFGEK 105
Query: 61 DWAYSRYYFFIDYGNVLFNNDSTLQAN----------------------MFTYGVGGDFM 98
W +RYY F+DYG+ +F ++ N MFTYGVG D +
Sbjct: 106 RWFGARYYGFMDYGHAVFGANALTSDNGGVCELHQPCATKVGTMGNLSDMFTYGVGIDTL 165
Query: 99 VAYAKNPINRWAFFFGLQLAANTW 122
+ FFFG Q+A N+W
Sbjct: 166 YNVINKEDASFGFFFGAQIAGNSW 189
>ref|NP_223332.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||G71909 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06195.1| (AE001493) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 270
Score = 51.6 bits (122), Expect = 5e-06
Identities = 38/144 (26%), Positives = 56/144 (38%), Gaps = 41/144 (28%)
Query: 20 ENLSYMSSSYQIGTVFMRPLNTNK------------------LLQGASILQGY-EVNPKN 60
+N Y+ SYQ+G N K ++QG + GY + +
Sbjct: 46 KNAWYLGISYQVGQASQSVKNPPKSSEFNYPKFPVGKTDYLAVMQGLGLTVGYKQFFGEK 105
Query: 61 DWAYSRYYFFIDYGNVLFNNDSTLQAN----------------------MFTYGVGGDFM 98
W +RYY F+DYG+ +F ++ N MFTYGVG D +
Sbjct: 106 RWFGARYYGFMDYGHAVFGANALTSDNGGVCKLNEPCATKVGTMGNLSDMFTYGVGIDTL 165
Query: 99 VAYAKNPINRWAFFFGLQLAANTW 122
+ FFFG Q+A N+W
Sbjct: 166 YNVINKEDASFGFFFGAQIAGNSW 189
>ref|NP_223027.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||E71948 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD05881.1| (AE001467) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 245
Score = 50.1 bits (118), Expect = 1e-05
Identities = 54/196 (27%), Positives = 85/196 (42%), Gaps = 29/196 (14%)
Query: 27 SSYQIG-TVFMRPLNTNKLL-----QGASILQGYEVNPKNDWAYS-RYYFFIDYGNVLFN 79
+SYQ G T M +N+ K L G ++ GY D RY+ F+D+
Sbjct: 57 TSYQTGYTNVMTSINSVKKLTNMGSNGIGLVMGYNHFFHPDKVLGLRYFAFLDWQGYGMR 116
Query: 80 NDSTLQA--NMFTYGVGGD-----FMVAYAKNPIN-RWAFFFGLQLAANTWILNNKVKDL 131
NM TYGVG D F ++ ++ I F G+ +A N+W + NK ++L
Sbjct: 117 YPKGYYGGNNMITYGVGVDAIWNFFQGSFYQDDIGVDIGVFGGIAIAGNSWYIGNKGQEL 176
Query: 132 VVNTWDSLKDFNFHNTYFRAIGKFGVQFRTIVLYHKVDVEIGMKI-------FLTPERRS 184
+ T S D NT F+ + FG + + + + EIG K + T +
Sbjct: 177 LGITNSSAVD----NTSFQFLFNFGFK---ALFVDEHEFEIGFKFPTLNNKYYTTDALKV 229
Query: 185 LFERSFLFFVSHSWHF 200
R F F+V +++HF
Sbjct: 230 QMRRVFAFYVGYNYHF 245
>emb|CAB42877.1| (Y18995) HopV protein [Helicobacter pylori]
Length = 248
Score = 48.1 bits (113), Expect = 6e-05
Identities = 50/214 (23%), Positives = 83/214 (38%), Gaps = 47/214 (21%)
Query: 5 RILILSMSFLNILNAENLSYMSSSYQIGTV-----------FMRPLNTNKLLQGASILQG 53
RI++L + E+ +++ +YQ+ + +PL GA G
Sbjct: 4 RIILLGALGVLANAEESAAFVGVNYQVSMIQNQTKMVNDNGLQKPLIKFPPYAGAGFEVG 63
Query: 54 Y-EVNPKNDWAYSRYYFFIDY---------------------------GNVLFNNDS--- 82
Y + K W +RYY F DY GN L DS
Sbjct: 64 YKQFFGKKKWFGARYYGFFDYAHNRFGVMKKGIPVGESGFIYNSFSFGGNTLMERDSYQG 123
Query: 83 TLQANMFTYGVGGDFMVAYAKNPINRWAFFFGLQLAANTWILNNKVKDLVVNTWDSLKDF 142
N+FTYGVG D + + + F G+QLA ++W + + + +
Sbjct: 124 QYYVNLFTYGVGLDTLWNFVNKENMVFGFVVGIQLAGDSWA--TSISKEIASYAKHHSNS 181
Query: 143 NFHNTYFRAIGKFGVQFRTIVLYHKVDVEIGMKI 176
++ F+ + KFGV RT + H +E+G+K+
Sbjct: 182 SYSPANFQFLWKFGV--RTHIAKHN-SLELGIKV 212
>ref|NP_207122.1| (NC_000915) outer membrane protein (omp10) [Helicobacter pylori
26695]
pir||D64560 outer membrane protein - Helicobacter pylori (strain 26695)
gb|AAD07398.1| (AE000550) outer membrane protein (omp10) [Helicobacter pylori
26695]
Length = 254
Score = 46.6 bits (109), Expect = 2e-04
Identities = 46/174 (26%), Positives = 77/174 (43%), Gaps = 19/174 (10%)
Query: 41 TNKLLQGASILQGYEVNPKNDWAYS-RYYFFIDYGNVLFNNDSTLQA--NMFTYGVGGD- 96
TN G ++ GY D RY+ F+D+ NM TYGVG D
Sbjct: 86 TNMGSNGIGLVMGYNHFFHPDKILGLRYFAFLDWQGYGMRYPKGYYGGNNMITYGVGVDA 145
Query: 97 ----FMVAYAKNPIN-RWAFFFGLQLAANTWILNNKVKDLVVNTWDSLKDFNFHNTYFRA 151
F ++ ++ I+ F G+ +A N+W + +K ++L+ T S D NT F+
Sbjct: 146 VWNFFQGSFYQDDISVDIGVFGGIAIAGNSWYIGSKGQELLGITNSSAVD----NTSFQF 201
Query: 152 IGKFGVQFRTIVLYHKVDV-----EIGMKIFLTPERRSLFERSFLFFVSHSWHF 200
+ FG++ V H+ ++ I K + T + R F F+V +++HF
Sbjct: 202 LFNFGLK-ALFVDEHEFEIGFKFPTINNKYYTTDALKVQMRRVFAFYVGYNYHF 254
>ref|NP_223142.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||D71934 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06005.1| (AE001476) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 186
Score = 46.2 bits (108), Expect = 2e-04
Identities = 44/128 (34%), Positives = 62/128 (48%), Gaps = 21/128 (16%)
Query: 8 ILSMSFLNILNAE-NLSYMSSSYQIGTVFMRPLNTNKL-------LQGASILQGYEVNPK 59
ILS+S L E N +M + YQ G P N+N L G + G+ V
Sbjct: 8 ILSLSASLALAGEVNGFFMGAGYQQGRY--GPYNSNYSDWRHGNDLYGLNFKLGF-VGFA 64
Query: 60 NDWAYSRYYFFIDYGNVLFNNDST--LQANMFTYGVGGDFMVAYAKNPINRWA--FFFGL 115
N W +R Y F+D+ FN T + N+ TYG GGD +V P++++A G+
Sbjct: 65 NKWFGARVYGFLDW----FNTSGTEHTKTNLLTYGGGGDLIVNLI--PLDKFALGLIGGV 118
Query: 116 QLAANTWI 123
QLA NTW+
Sbjct: 119 QLAGNTWM 126
>ref|NP_207270.1| (NC_000915) outer membrane protein (omp11) [Helicobacter pylori
26695]
pir||H64578 outer membrane protein - Helicobacter pylori (strain 26695)
gb|AAD07540.1| (AE000562) outer membrane protein (omp11) [Helicobacter pylori
26695]
Length = 186
Score = 46.2 bits (108), Expect = 2e-04
Identities = 44/128 (34%), Positives = 62/128 (48%), Gaps = 21/128 (16%)
Query: 8 ILSMSFLNILNAE-NLSYMSSSYQIGTVFMRPLNTNKL-------LQGASILQGYEVNPK 59
ILS+S L E N +M + YQ G P N+N L G + G+ V
Sbjct: 8 ILSLSTSLALAGEVNGFFMGAGYQQGRY--GPYNSNYSDWRHGNDLYGLNFKLGF-VGFA 64
Query: 60 NDWAYSRYYFFIDYGNVLFNNDST--LQANMFTYGVGGDFMVAYAKNPINRWA--FFFGL 115
N W +R Y F+D+ FN T + N+ TYG GGD +V P++++A G+
Sbjct: 65 NKWFGARVYGFLDW----FNTSGTEHTKTNLLTYGGGGDLIVNLI--PLDKFALGLIGGV 118
Query: 116 QLAANTWI 123
QLA NTW+
Sbjct: 119 QLAGNTWM 126
>ref|NP_208260.1| (NC_000915) outer membrane protein (omp31) [Helicobacter pylori
26695]
pir||E64703 outer membrane protein - Helicobacter pylori (strain 26695)
gb|AAD08527.1| (AE000647) outer membrane protein (omp31) [Helicobacter pylori
26695]
Length = 248
Score = 45.8 bits (107), Expect = 3e-04
Identities = 47/199 (23%), Positives = 76/199 (37%), Gaps = 47/199 (23%)
Query: 20 ENLSYMSSSYQIGTV-----------FMRPLNTNKLLQGASILQGY-EVNPKNDWAYSRY 67
E+ +++ +YQ+ + +PL GA GY + K W RY
Sbjct: 19 ESAAFVGVNYQVSMIQNQTKMVNDNGLQKPLIKFPPYAGAGFEVGYKQFFGKKKWFGMRY 78
Query: 68 YFFIDY---------------------------GNVLFNNDS---TLQANMFTYGVGGDF 97
Y F DY GN L DS N+FTYGVG D
Sbjct: 79 YGFFDYAHNRFGVMKKGIPVGDSGFIYNSFSFGGNTLTERDSYQGQYYVNLFTYGVGLDT 138
Query: 98 MVAYAKNPINRWAFFFGLQLAANTWILNNKVKDLVVNTWDSLKDFNFHNTYFRAIGKFGV 157
+ + + F G+QLA ++W + + + + ++ F+ + KFGV
Sbjct: 139 LWNFVNKENMVFGFVVGIQLAGDSWA--TSISKEIAHYAKHHSNSSYSPANFQFLWKFGV 196
Query: 158 QFRTIVLYHKVDVEIGMKI 176
RT + H +E+G+K+
Sbjct: 197 --RTHIAKHN-SLELGIKV 212
>ref|NP_206827.1| (NC_000915) outer membrane protein (omp2) [Helicobacter pylori
26695]
pir||A64523 outer membrane protein - Helicobacter pylori (strain 26695)
gb|AAD07106.1| (AE000525) outer membrane protein (omp2) [Helicobacter pylori
26695]
Length = 711
Score = 45.4 bits (106), Expect = 4e-04
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 42 NKLLQGASILQGY-EVNPKNDWAYSRYYFFIDYGNV-----LFNNDSTLQANMFTYGVGG 95
N + G GY + KN +RYY F+DY + FN+DS +++TYGVG
Sbjct: 535 NGAMNGIGFQVGYKQFFGKNKRWGARYYGFVDYNHTYNKSQFFNSDS----DVWTYGVGS 590
Query: 96 DFMVAYAKNPINR-----WAFFFGLQLAANTWILNNKVKDLVVNTWDSLK 140
D +V + + + + F G+QLA +W+ + V VN + K
Sbjct: 591 DLLVNFINDKATKHNKISFGAFGGIQLAGTSWLNSQYVNLANVNNYYKAK 640
>emb|CAB42879.1| (Y18997) HopX protein [Helicobacter pylori]
Length = 472
Score = 45.4 bits (106), Expect = 4e-04
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 7/63 (11%)
Query: 66 RYYFFIDYG-NVLFNNDSTLQANMFTYGVGGDFM-----VAYAKNPINRWAFFFGLQLAA 119
RYY F DYG L + +S ++AN+FTYG G DF+ ++ +N F G+Q+A
Sbjct: 322 RYYAFFDYGFTQLGSLNSAVKANIFTYGAGTDFLWNIFRRVFSDQSLN-VGVFGGIQIAG 380
Query: 120 NTW 122
NTW
Sbjct: 381 NTW 383
>ref|NP_222959.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||H71957 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD05814.1| (AE001461) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 471
Score = 45.4 bits (106), Expect = 4e-04
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 7/63 (11%)
Query: 66 RYYFFIDYG-NVLFNNDSTLQANMFTYGVGGDFM-----VAYAKNPINRWAFFFGLQLAA 119
RYY F DYG L + +S ++AN+FTYG G DF+ ++ +N F G+Q+A
Sbjct: 321 RYYAFFDYGFTQLGSLNSAVKANIFTYGAGTDFLWNIFRRVFSDQSLN-VGVFGGIQIAG 379
Query: 120 NTW 122
NTW
Sbjct: 380 NTW 382
>ref|NP_207052.1| (NC_000915) outer membrane protein (omp8) [Helicobacter pylori
26695]
pir||F64551 outer membrane protein - Helicobacter pylori (strain 26695)
gb|AAD07320.1| (AE000544) outer membrane protein (omp8) [Helicobacter pylori
26695]
Length = 431
Score = 45.1 bits (105), Expect = 5e-04
Identities = 26/63 (41%), Positives = 36/63 (56%), Gaps = 7/63 (11%)
Query: 66 RYYFFIDYG-NVLFNNDSTLQANMFTYGVGGDFM-----VAYAKNPINRWAFFFGLQLAA 119
RYY F DYG L + S ++AN+FTYG G DF+ ++ +N F G+Q+A
Sbjct: 281 RYYAFFDYGFTQLGSLSSAVKANIFTYGAGTDFLWNIFRRVFSDQSLN-VGVFGGIQIAG 339
Query: 120 NTW 122
NTW
Sbjct: 340 NTW 342
>ref|NP_223800.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||C71850 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06665.1| (AE001536) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 697
Score = 44.7 bits (104), Expect = 6e-04
Identities = 50/193 (25%), Positives = 80/193 (40%), Gaps = 28/193 (14%)
Query: 29 YQIGTV--FMRPLNTNKLLQGASILQGY-EVNPKNDWAYSRYYFFIDYGNVLFNNDSTL- 84
YQ+G F+ + + + G + GY + K RYY F D+G F +S+L
Sbjct: 512 YQMGFARNFLEHNSNSNNMNGFGVKMGYKQFFGKKRMFGLRYYGFYDFGYAQFGTESSLV 571
Query: 85 QANMFTYGVGGDFMVAYAKNPINRWA----FFFGLQLAANTWILNNKVKDLVVNTWDSLK 140
+A + +YG G DF+ A FF G+QLA TW N D V K
Sbjct: 572 KATLSSYGAGTDFLYNVFTRKRGTEAIDIGFFAGIQLAGQTWKTN--FLDQVDGNHLKPK 629
Query: 141 DFNFHNTYFRAIGKFGVQFRTIVLYHK------VDVEIGMKI-------FLTPERRSLFE 187
D T F+ + G++ + H+ +E G+KI + + + +
Sbjct: 630 D-----TSFQFLFDLGIRTNFSKIAHQKRSRFSQGIEFGLKIPVLYHTYYQSEGVTAKYR 684
Query: 188 RSFLFFVSHSWHF 200
R F F+V ++ F
Sbjct: 685 RDFSFYVGYNIGF 697
>ref|NP_223377.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||B71904 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06237.1| (AE001498) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 638
Score = 44.7 bits (104), Expect = 6e-04
Identities = 39/133 (29%), Positives = 55/133 (41%), Gaps = 29/133 (21%)
Query: 40 NTNKLLQGASILQGYE--VNPKNDWAYSRYYFFIDYGN-----VLFNNDSTLQANMFTYG 92
N N L G + GY+ W RYY F DY + FN+ S +++TYG
Sbjct: 459 NNNGALNGLGVQVGYKQFFGESKRWGL-RYYGFFDYNHGYIKSSFFNSSS----DIWTYG 513
Query: 93 VGGDFMVAYAKNPINR------WAFFFGLQLAANTWILNNKVKDLVVNTWDSLKDFNFHN 146
G D +V + + I R F G+QLA TW LN++ +L F+N
Sbjct: 514 GGSDLLVNFINDSITRKNNKLSVGLFGGIQLAGTTW-LNSQYMNLTA----------FNN 562
Query: 147 TYFRAIGKFGVQF 159
Y + QF
Sbjct: 563 PYSAKVNASNFQF 575
>ref|NP_223380.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||E71904 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06240.1| (AE001498) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 651
Score = 44.7 bits (104), Expect = 6e-04
Identities = 39/133 (29%), Positives = 55/133 (41%), Gaps = 29/133 (21%)
Query: 40 NTNKLLQGASILQGYE--VNPKNDWAYSRYYFFIDYGN-----VLFNNDSTLQANMFTYG 92
N N L G + GY+ W RYY F DY + FN+ S +++TYG
Sbjct: 472 NNNGALNGLGVQVGYKQFFGESKRWGL-RYYGFFDYNHGYIKSSFFNSSS----DIWTYG 526
Query: 93 VGGDFMVAYAKNPINR------WAFFFGLQLAANTWILNNKVKDLVVNTWDSLKDFNFHN 146
G D +V + + I R F G+QLA TW LN++ +L F+N
Sbjct: 527 GGSDLLVNFINDSITRKNNKLSVGLFGGIQLAGTTW-LNSQYMNLTA----------FNN 575
Query: 147 TYFRAIGKFGVQF 159
Y + QF
Sbjct: 576 PYSAKVNASNFQF 588
>ref|NP_224080.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||E71816 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06943.1| (AE001559) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 248
Score = 44.3 bits (103), Expect = 8e-04
Identities = 51/216 (23%), Positives = 85/216 (38%), Gaps = 51/216 (23%)
Query: 5 RILILSMSFLNILNAENLSYMSSSYQIGTV-----------FMRPLNTNKLLQGASILQG 53
RI++L + E+ +++ +YQ+ + +PL G G
Sbjct: 4 RIVLLGALGVLANAEESAAFVGVNYQVSMIQNQTKMVNDNGLQKPLIKFPPYAGPGFEVG 63
Query: 54 Y-EVNPKNDWAYSRYYFFIDY---------------------------GNVLFNNDS--- 82
Y + K W RYY F DY GN L DS
Sbjct: 64 YKQFFGKKKWFGMRYYGFFDYAHNRFGVMKKGIPVGESGFIYNSFSFGGNTLTERDSYQG 123
Query: 83 TLQANMFTYGVGGDFMVAYAKNPINRWAFFFGLQLAANTWI--LNNKVKDLVVNTWDSLK 140
N+FTYGVG D + + + F G+QLA ++W ++ ++ V + +S
Sbjct: 124 QYYINLFTYGVGLDTLWNFVNKENMVFGFVVGIQLAGDSWATSISKEIGSYVKHHSNS-- 181
Query: 141 DFNFHNTYFRAIGKFGVQFRTIVLYHKVDVEIGMKI 176
++ F+ + KFGV RT + H +E+G+K+
Sbjct: 182 --SYSPANFQFLWKFGV--RTHIAIHN-SLELGIKV 212
>ref|NP_207947.1| (NC_000915) outer membrane protein (omp25) [Helicobacter pylori
26695]
pir||D64664 outer membrane protein - Helicobacter pylori (strain 26695)
gb|AAD08204.1| (AE000621) outer membrane protein (omp25) [Helicobacter pylori
26695]
Length = 696
Score = 44.3 bits (103), Expect = 8e-04
Identities = 50/193 (25%), Positives = 81/193 (41%), Gaps = 28/193 (14%)
Query: 29 YQIGTV--FMRPLNTNKLLQGASILQGY-EVNPKNDWAYSRYYFFIDYGNVLFNNDSTL- 84
YQ+G F+ + + + G + GY + K RYY F D+G F +S+L
Sbjct: 511 YQMGFARNFLEHNSNSNNMNGFGVKMGYKQFFGKKRMFGLRYYGFYDFGYAQFGAESSLV 570
Query: 85 QANMFTYGVGGDFMVAYAKNPINRWA----FFFGLQLAANTWILNNKVKDLVVNTWDSLK 140
+A + +YG G DF+ A FF G+QLA TW N D V K
Sbjct: 571 KATLSSYGAGTDFLYNVFTRKRGTEAIDIGFFAGIQLAGQTWKTN--FLDQVDGNHLKPK 628
Query: 141 DFNFHNTYFRAIGKFGVQFRTIVLYHK------VDVEIGMKI-------FLTPERRSLFE 187
D T F+ + G++ + H+ +E G+KI + + + +
Sbjct: 629 D-----TSFQFLFDLGIRTNFSKIAHQKRSRFSQGIEFGLKIPVLYHTYYQSEGVTAKYR 683
Query: 188 RSFLFFVSHSWHF 200
R+F F+V ++ F
Sbjct: 684 RAFSFYVGYNIGF 696
>ref|NP_207705.1| (NC_000915) outer membrane protein (omp21) [Helicobacter pylori
26695]
pir||A64634 outer membrane protein (omp21) - Helicobacter pylori (strain 26695)
gb|AAD07957.1| (AE000600) outer membrane protein (omp21) [Helicobacter pylori
26695]
Length = 529
Score = 43.5 bits (101), Expect = 0.001
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 66 RYYFFIDYGNVLFNNDSTL-QANMFTYGVGGD-----FMVAYAKNPINRWAFFFGLQLAA 119
RYY F Y N T Q N+ TYGVG D F ++ +N FF G+QLA
Sbjct: 385 RYYGFFSYNGAGVGNGPTYNQVNLLTYGVGTDVLYNVFSRSFGSRSLNA-GFFGGIQLAG 443
Query: 120 NTWILNNKVKDLVVNTWDSLKDFNFHNTYFRAIGKFGVQFRTIVLYHKVDVEIGMKI 176
+T+I + + N + K + R FG+ + + +++ +EIG++I
Sbjct: 444 DTYISTLRNSPQLANRPTATKFQFLFDVGLRM--NFGILKKDLKSHNQHSIEIGVQI 498
>ref|NP_207516.1| (NC_000915) outer membrane protein [Helicobacter pylori 26695]
pir||B64610 outer membrane protein - Helicobacter pylori (strain 26695)
Length = 608
Score = 42.7 bits (99), Expect = 0.002
Identities = 39/133 (29%), Positives = 54/133 (40%), Gaps = 29/133 (21%)
Query: 40 NTNKLLQGASILQGYE--VNPKNDWAYSRYYFFIDYGN-----VLFNNDSTLQANMFTYG 92
N N L G + GY+ W RYY F DY + FN+ S +++TYG
Sbjct: 429 NNNGALNGLGVQVGYKQFFGESKRWGL-RYYGFFDYNHGYIKSSFFNSSS----DIWTYG 483
Query: 93 VGGDFMVAYAKNPINRW------AFFFGLQLAANTWILNNKVKDLVVNTWDSLKDFNFHN 146
G D +V + I R F G+QLA TW LN++ +L F+N
Sbjct: 484 GGSDLLVNIINDSITRKNNKLSVGLFGGIQLAGTTW-LNSQYVNLTA----------FNN 532
Query: 147 TYFRAIGKFGVQF 159
Y + QF
Sbjct: 533 PYSAKVNATNFQF 545
>ref|NP_207519.1| (NC_000915) outer membrane protein [Helicobacter pylori 26695]
pir||E64610 outer membrane protein - Helicobacter pylori (strain 26695)
Length = 629
Score = 42.7 bits (99), Expect = 0.002
Identities = 39/133 (29%), Positives = 54/133 (40%), Gaps = 29/133 (21%)
Query: 40 NTNKLLQGASILQGYE--VNPKNDWAYSRYYFFIDYGN-----VLFNNDSTLQANMFTYG 92
N N L G + GY+ W RYY F DY + FN+ S +++TYG
Sbjct: 450 NNNGALNGLGVQVGYKQFFGESKRWGL-RYYGFFDYNHGYIKSSFFNSSS----DIWTYG 504
Query: 93 VGGDFMVAYAKNPINRW------AFFFGLQLAANTWILNNKVKDLVVNTWDSLKDFNFHN 146
G D +V + I R F G+QLA TW LN++ +L F+N
Sbjct: 505 GGSDLLVNIINDSITRKNNKLSVGLFGGIQLAGTTW-LNSQYVNLTA----------FNN 553
Query: 147 TYFRAIGKFGVQF 159
Y + QF
Sbjct: 554 PYSAKVNATNFQF 566
>ref|NP_222743.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||C71982 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD05605.1| (AE001442) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 690
Score = 42.4 bits (98), Expect = 0.003
Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 19/150 (12%)
Query: 42 NKLLQGASILQGY-EVNPKNDWAYSRYYFFIDYGNVLFNNDSTLQAN--MFTYGVGGDFM 98
N + G GY + KN +RYY F+DY N +N A+ ++TYGVG D +
Sbjct: 514 NGAMNGIGFQVGYKQFFGKNKRWGARYYGFVDY-NHTYNKSQFFNASSDVWTYGVGSDLL 572
Query: 99 VAYAKNPINR-----WAFFFGLQLAANTWILNNKVKDLVVNTWDSLKDFNFHNTYFRAIG 153
V + + + + F G+ LA +W+ + V VN + K + F+ +
Sbjct: 573 VNFINDKATKHNKISFGAFGGIALAGTSWLNSQYVNLANVNNYYKAK---INTANFQFLF 629
Query: 154 KFGVQFRTIVLYHKV-------DVEIGMKI 176
G++ H+ +E+G KI
Sbjct: 630 NLGLRMNLARKKHRATDNAAQHGIELGTKI 659
>emb|CAB05387.1| (Z82988) unknown [Helicobacter pylori]
Length = 518
Score = 42.0 bits (97), Expect = 0.004
Identities = 33/117 (28%), Positives = 54/117 (45%), Gaps = 9/117 (7%)
Query: 66 RYYFFIDYGNVLFNNDSTL-QANMFTYGVGGD-----FMVAYAKNPINRWAFFFGLQLAA 119
RYY F Y N T Q N+ TYGVG D F ++ +N FF G+QLA
Sbjct: 374 RYYGFFSYNGAGVGNGPTYNQVNLLTYGVGTDVLYNVFSRSFGSRSLNA-GFFGGIQLAG 432
Query: 120 NTWILNNKVKDLVVNTWDSLKDFNFHNTYFRAIGKFGVQFRTIVLYHKVDVEIGMKI 176
+T+I + + + + K + R FG+ + + +++ +EIG++I
Sbjct: 433 DTYISTLRNSSQLASRPTATKFQFLFDVGLRM--NFGILKKDLKSHNQHSIEIGVQI 487
>emb|CAB42974.1| (Y18985) hopZ [Helicobacter pylori]
Length = 699
Score = 42.0 bits (97), Expect = 0.004
Identities = 31/107 (28%), Positives = 47/107 (42%), Gaps = 9/107 (8%)
Query: 42 NKLLQGASILQGYE--VNPKNDWAYSRYYFFIDYGNVLFNNDSTLQAN-MFTYGVGGDFM 98
N + G + GY+ K W +RYY F DY + + A+ +FTYGVG D +
Sbjct: 523 NGAMNGIGVQIGYKQFFGEKRKWG-ARYYGFFDYNHAYIKSSFFNSASDVFTYGVGTDVL 581
Query: 99 VAY-----AKNPINRWAFFFGLQLAANTWILNNKVKDLVVNTWDSLK 140
+ KN + F G+ LA +W+ + V N + S K
Sbjct: 582 YNFINDKATKNNKISFGVFGGIALAGTSWLNSQYVNLATFNNFYSAK 628
>ref|NP_207715.1| (NC_000915) outer membrane protein (omp22) [Helicobacter pylori
26695]
pir||C64635 outer membrane protein - Helicobacter pylori (strain 26695)
gb|AAD07978.1| (AE000602) outer membrane protein (omp22) [Helicobacter pylori
26695]
Length = 369
Score = 42.0 bits (97), Expect = 0.004
Identities = 50/187 (26%), Positives = 76/187 (39%), Gaps = 42/187 (22%)
Query: 45 LQGASILQGYE---VNPKNDWAYSRYYFFIDYGNVLF-----NNDSTLQANMFTYGVGGD 96
+ G S+ GY+ KN RYY F DYG F D + N YG+G D
Sbjct: 194 MYGVSLSVGYKHFFTKKKNQGL--RYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLGID 251
Query: 97 FMVAYAKNPINRWA--FFFGLQLAANTWILNNKVKDLVVNTWDSLKDF----------NF 144
++ + N + F+ G LA ++W+ + ++ W S DF
Sbjct: 252 YLYNFIDNAKKHSSVGFYLGFALAGSSWVGSG------LSMWVSQTDFINNYLTGYQAKM 305
Query: 145 HNTYFRAIGKFGVQFRTIVLYHKVDVEIGMKI------FLTPERRSL-----FERSFLFF 193
H ++F+ FGV R V H E+G+KI F + L F+R +F
Sbjct: 306 HTSFFQIPLNFGV--RVNVNRHN-GFEMGLKIPLAMNSFYETHGKGLNTSLFFKRLVMFN 362
Query: 194 VSHSWHF 200
VS+ + F
Sbjct: 363 VSYVYSF 369
>ref|NP_207275.1| (NC_000915) outer membrane protein (omp12) [Helicobacter pylori
26695]
pir||E64579 outer membrane protein - Helicobacter pylori (strain 26695)
gb|AAD07548.1| (AE000562) outer membrane protein (omp12) [Helicobacter pylori
26695]
Length = 367
Score = 42.0 bits (97), Expect = 0.004
Identities = 50/187 (26%), Positives = 76/187 (39%), Gaps = 42/187 (22%)
Query: 45 LQGASILQGYE---VNPKNDWAYSRYYFFIDYGNVLF-----NNDSTLQANMFTYGVGGD 96
+ G S+ GY+ KN RYY F DYG F D + N YG+G D
Sbjct: 192 MYGVSLSVGYKHFFTKKKNQGL--RYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLGID 249
Query: 97 FMVAYAKNPINRWA--FFFGLQLAANTWILNNKVKDLVVNTWDSLKDF----------NF 144
++ + N + F+ G LA ++W+ + ++ W S DF
Sbjct: 250 YLYNFIDNAKKHSSVGFYLGFALAGSSWVGSG------LSMWVSQTDFINNYLTGYQAKM 303
Query: 145 HNTYFRAIGKFGVQFRTIVLYHKVDVEIGMKI------FLTPERRSL-----FERSFLFF 193
H ++F+ FGV R V H E+G+KI F + L F+R +F
Sbjct: 304 HTSFFQIPLNFGV--RVNVNRHN-GFEMGLKIPLAMNSFYETHGKGLNTSLFFKRLVMFN 360
Query: 194 VSHSWHF 200
VS+ + F
Sbjct: 361 VSYVYSF 367
>ref|NP_222729.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||A71986 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD05591.1| (AE001440) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 668
Score = 41.6 bits (96), Expect = 0.005
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 9/107 (8%)
Query: 42 NKLLQGASILQGYE--VNPKNDWAYSRYYFFIDYGNVLFNNDSTLQAN-MFTYGVGGDFM 98
N + G + GY+ K W RYY F DY + + A+ +FTYGVG D +
Sbjct: 492 NGAMNGIGVQVGYKQFFGEKRRWGL-RYYGFFDYNHAYIKSSFFNSASDVFTYGVGTDVL 550
Query: 99 VAY-----AKNPINRWAFFFGLQLAANTWILNNKVKDLVVNTWDSLK 140
+ KN + F G+ LA +W+ + V N + S K
Sbjct: 551 YNFINDKTTKNSKISFGVFGGIALAGTSWLNSQYVNLATFNNFYSAK 597
>emb|CAB42973.1| (Y18984) hopZ [Helicobacter pylori]
Length = 668
Score = 41.6 bits (96), Expect = 0.005
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 9/107 (8%)
Query: 42 NKLLQGASILQGYE--VNPKNDWAYSRYYFFIDYGNVLFNNDSTLQAN-MFTYGVGGDFM 98
N + G + GY+ K W RYY F DY + + A+ +FTYGVG D +
Sbjct: 492 NGAMNGIGVQVGYKQFFGEKRKWGL-RYYGFFDYNHAYIKSSFFNSASDVFTYGVGTDVL 550
Query: 99 VAY-----AKNPINRWAFFFGLQLAANTWILNNKVKDLVVNTWDSLK 140
+ KN + F G+ LA +W+ + V N + S K
Sbjct: 551 YNFINDKATKNNKISFGVFGGIALAGTSWLNSQYVNLATFNNFYSAK 597
>ref|NP_223567.1| (NC_000921) Outer membrane protein/porin [Helicobacter pylori J99]
pir||D71880 outer membrane protein/porin - Helicobacter pylori (strain J99)
gb|AAD06427.1| (AE001514) Outer membrane protein/porin [Helicobacter pylori J99]
Length = 527
Score = 41.6 bits (96), Expect = 0.005
Identities = 33/117 (28%), Positives = 54/117 (45%), Gaps = 9/117 (7%)
Query: 66 RYYFFIDYGNVLFNNDSTL-QANMFTYGVGGD-----FMVAYAKNPINRWAFFFGLQLAA 119
RYY F Y N T Q N+ TYGVG D F ++ +N FF G+QLA
Sbjct: 383 RYYGFFSYNGAGVGNGPTYNQVNLLTYGVGTDVLYNVFSRSFGSRSLNA-GFFGGIQLAG 441
Query: 120 NTWILNNKVKDLVVNTWDSLKDFNFHNTYFRAIGKFGVQFRTIVLYHKVDVEIGMKI 176
+T+I + + + + K + R FG+ + + +++ +EIG++I
Sbjct: 442 DTYISTLRNSPQLASRPTATKFQFLFDVGLRM--NFGILKKDLKSHNQHSIEIGVQI 496
>emb|CAB42979.1| (Y18991) hopZ [Helicobacter pylori]
Length = 667
Score = 41.2 bits (95), Expect = 0.007
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 9/107 (8%)
Query: 42 NKLLQGASILQGYE--VNPKNDWAYSRYYFFIDYGNVLFNNDSTLQAN-MFTYGVGGDFM 98
N + G + GY+ K W RYY F DY + + A+ +FTYGVG D +
Sbjct: 491 NGAMNGIGVQVGYKQFFGEKRRWGL-RYYGFFDYNHAYIKSSFFNSASDVFTYGVGTDVL 549
Query: 99 VAY-----AKNPINRWAFFFGLQLAANTWILNNKVKDLVVNTWDSLK 140
+ KN + F G+ LA +W+ + V N + S K
Sbjct: 550 YNFINDKATKNNKISFGVFGGIALAGTSWLNSQYVNLATFNNFYSAK 596
>emb|CAB43002.1| (Y18990) hopZ [Helicobacter pylori]
Length = 669
Score = 41.2 bits (95), Expect = 0.007
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 9/107 (8%)
Query: 42 NKLLQGASILQGYE--VNPKNDWAYSRYYFFIDYGNVLFNNDSTLQAN-MFTYGVGGDFM 98
N + G + GY+ K W RYY F DY + + A+ +FTYGVG D +
Sbjct: 493 NGAMNGIGVQVGYKQFFGEKRRWGL-RYYGFFDYNHAYIKSSFFNSASDVFTYGVGTDVL 551
Query: 99 VAY-----AKNPINRWAFFFGLQLAANTWILNNKVKDLVVNTWDSLK 140
+ KN + F G+ LA +W+ + V N + S K
Sbjct: 552 YNFINDKATKNNKISFGVFGGIALAGTSWLNSQYVNLATFNNFYSAK 598
>emb|CAB53535.1| (Y18992) hopZ [Helicobacter pylori]
Length = 666
Score = 40.8 bits (94), Expect = 0.009
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 9/107 (8%)
Query: 42 NKLLQGASILQGYE--VNPKNDWAYSRYYFFIDYGNVLFNNDSTLQAN-MFTYGVGGDFM 98
N + G + GY+ K W RYY F DY + + A+ +FTYGVG D +
Sbjct: 490 NGAMNGIGVQIGYKQFFGEKRRWGL-RYYGFFDYNHAYIKSSFFNSASDVFTYGVGTDVL 548
Query: 99 VAY-----AKNPINRWAFFFGLQLAANTWILNNKVKDLVVNTWDSLK 140
+ KN + F G+ LA +W+ + V N + S K
Sbjct: 549 YNFINDKATKNNKISFGVFGGIALAGTSWLNSQYVNLATFNNFYSAK 595
>ref|NP_206811.1| (NC_000915) outer membrane protein [Helicobacter pylori 26695]
pir||A64521 outer membrane protein - Helicobacter pylori (strain 26695)
Length = 634
Score = 40.8 bits (94), Expect = 0.009
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 9/107 (8%)
Query: 42 NKLLQGASILQGYE--VNPKNDWAYSRYYFFIDYGNVLFNNDSTLQAN-MFTYGVGGDFM 98
N + G + GY+ K W RYY F DY + + A+ +FTYGVG D +
Sbjct: 458 NGAMNGIGVQIGYKQFFGEKRRWGL-RYYGFFDYNHAYIKSSFFNSASDVFTYGVGTDVL 516
Query: 99 VAY-----AKNPINRWAFFFGLQLAANTWILNNKVKDLVVNTWDSLK 140
+ KN + F G+ LA +W+ + V N + S K
Sbjct: 517 YNFINDKATKNNKISFGVFGGIALAGTSWLNSQYVNLATFNNFYSAK 563
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.328 0.141 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,158,036
Number of Sequences: 1026957
Number of extensions: 5188274
Number of successful extensions: 12672
Number of sequences better than 1.0e-02: 46
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 12598
Number of HSP's gapped (non-prelim): 62
length of query: 200
length of database: 324,149,939
effective HSP length: 115
effective length of query: 85
effective length of database: 206,049,884
effective search space: 17514240140
effective search space used: 17514240140
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 94 (40.8 bits)