BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645684|ref|NP_207861.1| hypothetical protein
[Helicobacter pylori 26695]
         (84 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207861.1|  (NC_000915) hypothetical protein [Helicoba...   175  8e-44
gb|AAB66378.1|  (U97567) unknown protein [Helicobacter pylori]    157  2e-38
ref|NP_223074.1|  (NC_000921) putative [Helicobacter pylori ...   147  2e-35

>ref|NP_207861.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 sp|O07680|YA70_HELPY Hypothetical protein HP1070 (ORFX)
 pir||F64653 hypothetical protein HP1070 - Helicobacter pylori (strain 26695)
 gb|AAD08121.1| (AE000614) H. pylori predicted coding region HP1070 [Helicobacter
          pylori 26695]
          Length = 84

 Score =  175 bits (444), Expect = 8e-44
 Identities = 84/84 (100%), Positives = 84/84 (100%)

Query: 1  MLAYKQIFDKGLKPYYKHSVCLKLFFRFCFLKTHAYQQRYQAFALTLFSCKFFNACKIFL 60
          MLAYKQIFDKGLKPYYKHSVCLKLFFRFCFLKTHAYQQRYQAFALTLFSCKFFNACKIFL
Sbjct: 1  MLAYKQIFDKGLKPYYKHSVCLKLFFRFCFLKTHAYQQRYQAFALTLFSCKFFNACKIFL 60

Query: 61 LAIGFKIVFIPILEAKLKRVSNAY 84
          LAIGFKIVFIPILEAKLKRVSNAY
Sbjct: 61 LAIGFKIVFIPILEAKLKRVSNAY 84



>gb|AAB66378.1| (U97567) unknown protein [Helicobacter pylori]
          Length = 84

 Score =  157 bits (398), Expect = 2e-38
 Identities = 74/84 (88%), Positives = 79/84 (93%)

Query: 1  MLAYKQIFDKGLKPYYKHSVCLKLFFRFCFLKTHAYQQRYQAFALTLFSCKFFNACKIFL 60
          M AYKQIFDKGLKPYYKHSVCLK FFRFCFLKTHAYQQRY+AFALTLF C+FFNACKIF+
Sbjct: 1  MRAYKQIFDKGLKPYYKHSVCLKFFFRFCFLKTHAYQQRYKAFALTLFFCEFFNACKIFI 60

Query: 61 LAIGFKIVFIPILEAKLKRVSNAY 84
           AIGFK+VFIPIL+AKLKRV NAY
Sbjct: 61 PAIGFKMVFIPILKAKLKRVFNAY 84



>ref|NP_223074.1| (NC_000921) putative [Helicobacter pylori J99]
 sp|Q9ZM67|YA70_HELPJ Hypothetical protein JHP0355
 pir||C71941 hypothetical protein jhp0355 - Helicobacter pylori (strain J99)
 gb|AAD05933.1| (AE001471) putative [Helicobacter pylori J99]
          Length = 86

 Score =  147 bits (372), Expect = 2e-35
 Identities = 73/86 (84%), Positives = 77/86 (88%), Gaps = 2/86 (2%)

Query: 1  MLAYKQIFDKGLKPYYKHSVCLKLFFRFCFLKTHAYQQRYQAFALTLFSCKFFNACKIFL 60
          M + KQIFDKGLKPYYKHSVCLK FFRFCFLK HAYQQRY+AFALTLFSCKFFNACKIF+
Sbjct: 1  MRSCKQIFDKGLKPYYKHSVCLKPFFRFCFLKIHAYQQRYRAFALTLFSCKFFNACKIFI 60

Query: 61 LAIGFKIVFIPIL--EAKLKRVSNAY 84
            I FKIVFIPIL  +AKLKRVSNAY
Sbjct: 61 PIIDFKIVFIPILKHQAKLKRVSNAY 86



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.339    0.149    0.471 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,193,605
Number of Sequences: 1026957
Number of extensions: 1538060
Number of successful extensions: 4824
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4820
Number of HSP's gapped (non-prelim): 3
length of query: 84
length of database: 324,149,939
effective HSP length: 60
effective length of query: 24
effective length of database: 262,532,519
effective search space: 6300780456
effective search space used: 6300780456
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 90 (39.3 bits)