BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644738|ref|NP_206908.1| hypothetical protein
[Helicobacter pylori 26695]
         (186 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_206908.1|  (NC_000915) hypothetical protein [Helicoba...   403  e-112
ref|NP_222821.1|  (NC_000921) putative [Helicobacter pylori ...   249  1e-65

>ref|NP_206908.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||D64533 hypothetical protein HP0108 - Helicobacter pylori (strain 26695)
 gb|AAD07181.1| (AE000532) H. pylori predicted coding region HP0108 [Helicobacter
           pylori 26695]
          Length = 186

 Score =  403 bits (1035), Expect = e-112
 Identities = 186/186 (100%), Positives = 186/186 (100%)

Query: 1   MPKLVKWNKFRIKCWFIKIDQGAFMKTIEWNEEQRKAFQDLLREFTALIDAKAQEEKQTG 60
           MPKLVKWNKFRIKCWFIKIDQGAFMKTIEWNEEQRKAFQDLLREFTALIDAKAQEEKQTG
Sbjct: 1   MPKLVKWNKFRIKCWFIKIDQGAFMKTIEWNEEQRKAFQDLLREFTALIDAKAQEEKQTG 60

Query: 61  RTPKIPKYGSCQNGLNKFLAPWGYACKISPGSHGRLSYKPSIAFCRQDILGEGFVNGEIP 120
           RTPKIPKYGSCQNGLNKFLAPWGYACKISPGSHGRLSYKPSIAFCRQDILGEGFVNGEIP
Sbjct: 61  RTPKIPKYGSCQNGLNKFLAPWGYACKISPGSHGRLSYKPSIAFCRQDILGEGFVNGEIP 120

Query: 121 TPTKGFYIWLAYYWHNDAKKFHLCIGRSIEENGEKECQKCLAYDKIIDPDGDAYYQESYD 180
           TPTKGFYIWLAYYWHNDAKKFHLCIGRSIEENGEKECQKCLAYDKIIDPDGDAYYQESYD
Sbjct: 121 TPTKGFYIWLAYYWHNDAKKFHLCIGRSIEENGEKECQKCLAYDKIIDPDGDAYYQESYD 180

Query: 181 DLKSPS 186
           DLKSPS
Sbjct: 181 DLKSPS 186



>ref|NP_222821.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||F71973 hypothetical protein jhp0100 - Helicobacter pylori (strain J99)
 gb|AAD05679.1| (AE001449) putative [Helicobacter pylori J99]
          Length = 152

 Score =  249 bits (636), Expect = 1e-65
 Identities = 119/153 (77%), Positives = 133/153 (86%), Gaps = 2/153 (1%)

Query: 25  MKTIEWNEEQRKAFQDLLREFTALIDAKAQEEKQTGRTPKIPKYGSCQNGLNKFLAPWGY 84
           M+TIEWNEEQRKAFQDLLREF ALIDAK QE+KQ G+ PKIPKY SCQNGLNKFLAPWGY
Sbjct: 1   METIEWNEEQRKAFQDLLREFVALIDAKVQEKKQMGKKPKIPKYASCQNGLNKFLAPWGY 60

Query: 85  ACKISPGSHGRLSYKPSIAFCRQDILGEGFVNGEIPTPTKGFYIWLAYYWHNDAKKFHLC 144
           ACKIS G+ G LS++PSIAFCRQDILGEGFVNGE PTPTKGFY+W AYYW ND +K  LC
Sbjct: 61  ACKISLGT-GLLSHEPSIAFCRQDILGEGFVNGEKPTPTKGFYLWFAYYWRNDLEKIDLC 119

Query: 145 IGRSIEENGEKECQKCLAYDKIIDPDGDAYYQE 177
           IGRS EE+ ++ECQKCLAYDKII P+ +  Y+E
Sbjct: 120 IGRSDEEDKKEECQKCLAYDKII-PNRNECYRE 151



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.320    0.139    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,085,471
Number of Sequences: 1026957
Number of extensions: 6276402
Number of successful extensions: 14274
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14271
Number of HSP's gapped (non-prelim): 2
length of query: 186
length of database: 324,149,939
effective HSP length: 114
effective length of query: 72
effective length of database: 207,076,841
effective search space: 14909532552
effective search space used: 14909532552
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 94 (40.8 bits)