BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645688|ref|NP_207865.1| hypothetical protein
[Helicobacter pylori 26695]
(262 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207865.1| (NC_000915) hypothetical protein [Helicoba... 518 e-146
ref|NP_223070.1| (NC_000921) putative [Helicobacter pylori ... 496 e-139
ref|NP_039357.1| (NC_001319) ORF1068 [Marchantia polymorpha... 43 0.004
ref|NP_048227.1| (NC_001993) ORF MSV156 hypothetical protei... 42 0.005
ref|NP_326470.1| (NC_002771) MALTODEXTRIN ABC TRANSPORTER P... 42 0.005
gb|AAM00839.1|AF486549_1 (AF486549) RloC [Campylobacter jej... 42 0.009
>ref|NP_207865.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||B64654 hypothetical protein HP1074 - Helicobacter pylori (strain 26695)
gb|AAD08122.1| (AE000614) H. pylori predicted coding region HP1074 [Helicobacter
pylori 26695]
Length = 262
Score = 518 bits (1333), Expect = e-146
Identities = 262/262 (100%), Positives = 262/262 (100%)
Query: 1 MGIKEKEIELETLKREIAQAEASLEQDFIKYMVDKTNEKVEDLFFSNKPEFYRFVFTEQN 60
MGIKEKEIELETLKREIAQAEASLEQDFIKYMVDKTNEKVEDLFFSNKPEFYRFVFTEQN
Sbjct: 1 MGIKEKEIELETLKREIAQAEASLEQDFIKYMVDKTNEKVEDLFFSNKPEFYRFVFTEQN 60
Query: 61 NYLREKLTDKVGRAMDLSDEIQRDKTENESLENGTKFKKRFVFELQNDLIFLRTKRNTYS 120
NYLREKLTDKVGRAMDLSDEIQRDKTENESLENGTKFKKRFVFELQNDLIFLRTKRNTYS
Sbjct: 61 NYLREKLTDKVGRAMDLSDEIQRDKTENESLENGTKFKKRFVFELQNDLIFLRTKRNTYS 120
Query: 121 AKTEHENFQERLLAAKDTFRLIKANDFKTKIYPYQITLRLKTKHIIVFRWLKKEIIKRFV 180
AKTEHENFQERLLAAKDTFRLIKANDFKTKIYPYQITLRLKTKHIIVFRWLKKEIIKRFV
Sbjct: 121 AKTEHENFQERLLAAKDTFRLIKANDFKTKIYPYQITLRLKTKHIIVFRWLKKEIIKRFV 180
Query: 181 KKDLFTETLSIKITDKKGQKYALIANYNHASDIIELMLDDKTYTTTLYYQKPLFDLIKNS 240
KKDLFTETLSIKITDKKGQKYALIANYNHASDIIELMLDDKTYTTTLYYQKPLFDLIKNS
Sbjct: 181 KKDLFTETLSIKITDKKGQKYALIANYNHASDIIELMLDDKTYTTTLYYQKPLFDLIKNS 240
Query: 241 NFNLTIKDNTLEINQAKKRLFV 262
NFNLTIKDNTLEINQAKKRLFV
Sbjct: 241 NFNLTIKDNTLEINQAKKRLFV 262
>ref|NP_223070.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71944 hypothetical protein jhp0351 - Helicobacter pylori (strain J99)
gb|AAD05926.1| (AE001470) putative [Helicobacter pylori J99]
Length = 272
Score = 496 bits (1277), Expect = e-139
Identities = 250/257 (97%), Positives = 254/257 (98%)
Query: 1 MGIKEKEIELETLKREIAQAEASLEQDFIKYMVDKTNEKVEDLFFSNKPEFYRFVFTEQN 60
MGIKEKEIELETLKREIAQAEASLEQDFIK+MVDKTNEKVEDLFFSNKPEFYRFVFTEQN
Sbjct: 1 MGIKEKEIELETLKREIAQAEASLEQDFIKHMVDKTNEKVEDLFFSNKPEFYRFVFTEQN 60
Query: 61 NYLREKLTDKVGRAMDLSDEIQRDKTENESLENGTKFKKRFVFELQNDLIFLRTKRNTYS 120
NYLREKLTDKVGRAMDL DEIQRDKTENESLENG KFKKRFVFELQNDLIFLRTKRNTYS
Sbjct: 61 NYLREKLTDKVGRAMDLIDEIQRDKTENESLENGAKFKKRFVFELQNDLIFLRTKRNTYS 120
Query: 121 AKTEHENFQERLLAAKDTFRLIKANDFKTKIYPYQITLRLKTKHIIVFRWLKKEIIKRFV 180
AKTEHENFQE+LLAAKDTFRLIKANDFKTKIYPYQI LRLKTKHIIVF+WLKKEIIKRFV
Sbjct: 121 AKTEHENFQEKLLAAKDTFRLIKANDFKTKIYPYQIILRLKTKHIIVFKWLKKEIIKRFV 180
Query: 181 KKDLFTETLSIKITDKKGQKYALIANYNHASDIIELMLDDKTYTTTLYYQKPLFDLIKNS 240
KKDLFTETLSIKITDKKG+KYALIANYNHASDIIELMLDDKTYTTTLYYQKPLFDLIKNS
Sbjct: 181 KKDLFTETLSIKITDKKGRKYALIANYNHASDIIELMLDDKTYTTTLYYQKPLFDLIKNS 240
Query: 241 NFNLTIKDNTLEINQAK 257
NFNLTIKDNTLEINQAK
Sbjct: 241 NFNLTIKDNTLEINQAK 257
>ref|NP_039357.1| (NC_001319) ORF1068 [Marchantia polymorpha]
sp|P12221|YCF0_MARPO Hypothetical 127 kDa protein ycf1 (ORF 1068)
pir||S01519 hypothetical protein 1068 - liverwort (Marchantia polymorpha)
chloroplast
emb|CAA28143.1| (X04465) ORF1068 [Marchantia polymorpha]
Length = 1068
Score = 42.7 bits (99), Expect = 0.004
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 89 ESLENGTKFKKRFVFELQNDLIFLRTKRNTYSAKTEHENFQERLLAAKDTFRLIKANDFK 148
E+L+N KK ++ N+L F K+N K ++N + D F + ++K
Sbjct: 924 ENLKNFNSKKKEYINPNLNNLDF--KKKNVVITKLNNQNTLLKQNTDNDIFSI--NFEYK 979
Query: 149 TKIYPYQITLRLKTKHIIVFRWLKKEIIKRFVKKDLFTETLSIKITDKKGQ 199
T IY + LK KHI + ++LKK+ KK + + +IKI K Q
Sbjct: 980 TSIYINNLENLLKKKHISIEKYLKKQKTLNLKKKLIMIKQKTIKILKKNVQ 1030
>ref|NP_048227.1| (NC_001993) ORF MSV156 hypothetical protein [Melanoplus sanguinipes
entomopoxvirus]
pir||T28317 ORF MSV156 hypothetical protein - Melanoplus sanguinipes
entomopoxvirus
gb|AAC97677.1| (AF063866) ORF MSV156 hypothetical protein [Melanoplus sanguinipes
entomopoxvirus]
Length = 1127
Score = 42.4 bits (98), Expect = 0.005
Identities = 36/165 (21%), Positives = 78/165 (46%), Gaps = 19/165 (11%)
Query: 3 IKEKEIELETLKREIAQAEASLEQDF------IKYMVDKTNEKVEDLFFSNKP---EFYR 53
IK + +++ L +I + + F K +D +K++D+ +N E Y+
Sbjct: 366 IKLFDNDIQKLNNDITEQNNKITDFFNNSTRIFKEKLDTEYKKIDDIKNNNLQKLEESYK 425
Query: 54 FVFTEQNNYLREKLTDKVGRAMDL-SDEIQRDKTENESLENGTKFKKRFVFELQNDLIFL 112
+ EQ Y + K+ + ++L ++ +Q+ + EN+ ++ T++ K + + ND+I L
Sbjct: 426 KI-DEQTEYYKNKINKEYNDIIELKNNNLQKLEEENKKIDEQTEYYKNKINKEYNDIIEL 484
Query: 113 RTKRNTYSAKTEHENFQERLLAAK-------DTFRLIKANDFKTK 150
+ N + E++N ++L K + F + +DFK K
Sbjct: 485 K-NNNLQKLEEENKNINDKLTKLKNDIESNTELFNKLNISDFKDK 528
>ref|NP_326470.1| (NC_002771) MALTODEXTRIN ABC TRANSPORTER PERMEASE PROTEIN MALC
[Mycoplasma pulmonis]
emb|CAC13812.1| (AL445565) MALTODEXTRIN ABC TRANSPORTER PERMEASE PROTEIN MALC
[Mycoplasma pulmonis]
Length = 1034
Score = 42.4 bits (98), Expect = 0.005
Identities = 51/198 (25%), Positives = 89/198 (44%), Gaps = 24/198 (12%)
Query: 5 EKEIELETLKREI-AQAEASLEQDFIKYMVDKTNEKVEDLFFSNKPEF-YRFVFTEQNNY 62
+K EL+ K +I AQ + S ++ KY+ DK N K++ NK E+ Y + EQN
Sbjct: 213 QKLKELQNKKTQIVAQVKISKKEINKKYLEDKNNLKIKYKDRINKAEYSYNKDYFEQNQK 272
Query: 63 LREKL---TDKVGRAMDLSDEIQRDKTEN---ESLENGTKFKKRFVFELQNDLIFLRTKR 116
++E L +K+ + D +E+ ++K E +LE K ++ E + +LI +
Sbjct: 273 IKESLKHANEKIAQNKDKINELNKNKLEKIKALALEEKRALKANYL-EYKKNLIL---AK 328
Query: 117 NTYSAKTEHE------NFQERLLAAKDTFRLIKANDFKTKIYPYQIT---LRLKTKHIIV 167
Y H+ N+ E+ D N+F K+ Q+ L K I V
Sbjct: 329 KYYKLYINHQKVLLICNYYEKDKTQIDQLWKKYKNNFLNKVDDQQVKNDYFELYKKIINV 388
Query: 168 F---RWLKKEIIKRFVKK 182
+ KK+++K+ + K
Sbjct: 389 YENDNSYKKQVVKKIINK 406
>gb|AAM00839.1|AF486549_1 (AF486549) RloC [Campylobacter jejuni]
Length = 776
Score = 41.6 bits (96), Expect = 0.009
Identities = 48/197 (24%), Positives = 86/197 (43%), Gaps = 41/197 (20%)
Query: 1 MGIKEKEIELETLKREIAQAEASLEQDFIKYMVDKTNEKVEDLFFSNKPEFYRFVFTEQN 60
+G+++K+I+ KR K ++ NEK++D+ +N+ + T+Q
Sbjct: 114 IGVEQKDIKESIEKR--------------KEILKTRNEKLKDIQ-ANRENISK---TQQA 155
Query: 61 NY--LREKLTDKVGRAMDLSDEIQRDKTENESLENGTKFKKRFVFELQNDLIFLRTKRNT 118
L EKL DK K+E ++ G+ + KR L+NDLI ++ N
Sbjct: 156 KIKTLNEKLIDKAKLV----------KSEPNLIKQGSNYDKR---NLENDLIEIKDNINA 202
Query: 119 YSAKTEHENFQERLLAAKDTFRLIKANDFKTKIYP--YQITLRLKTKHIIVFRWLKKEII 176
Y E +N ++L K+ +I N F + + +L++ K +I+ L E+
Sbjct: 203 YILNNEEQNQLIKILEDKEKQNIIFKNTFNKDNFQGIFTYSLKILEKEVIIKENLTSELR 262
Query: 177 K------RFVKKDLFTE 187
K F K+ FT+
Sbjct: 263 KWLEEGLEFHKEHSFTQ 279
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.319 0.136 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149,053,252
Number of Sequences: 1026957
Number of extensions: 6021383
Number of successful extensions: 21371
Number of sequences better than 1.0e-02: 6
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 21369
Number of HSP's gapped (non-prelim): 6
length of query: 262
length of database: 324,149,939
effective HSP length: 119
effective length of query: 143
effective length of database: 201,942,056
effective search space: 28877714008
effective search space used: 28877714008
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 96 (41.6 bits)